Query psy13446
Match_columns 121
No_of_seqs 62 out of 64
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 19:37:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06364 PBP1_CaSR Ligand-bindi 99.9 4E-23 8.7E-28 175.8 11.1 100 14-120 389-489 (510)
2 cd06365 PBP1_Pheromone_recepto 99.9 1.1E-21 2.3E-26 164.9 10.1 96 15-120 353-448 (469)
3 cd06375 PBP1_mGluR_groupII Lig 99.8 4.9E-21 1.1E-25 160.7 10.2 94 17-120 350-450 (458)
4 cd06367 PBP1_iGluR_NMDA N-term 99.8 2.8E-20 6.1E-25 149.1 11.0 109 3-121 240-348 (362)
5 cd06376 PBP1_mGluR_groupIII Li 99.8 2E-19 4.3E-24 150.0 9.8 93 18-120 356-448 (463)
6 cd06379 PBP1_iGluR_NMDA_NR1 N- 99.8 5.1E-19 1.1E-23 143.0 10.9 104 4-120 256-359 (377)
7 cd06378 PBP1_iGluR_NMDA_NR2 N- 99.8 6.1E-19 1.3E-23 144.8 10.2 106 4-120 241-346 (362)
8 KOG4440|consensus 99.8 2.5E-19 5.5E-24 157.1 6.6 97 4-108 267-364 (993)
9 cd06374 PBP1_mGluR_groupI Liga 99.8 1.3E-18 2.8E-23 145.6 9.6 89 22-120 372-460 (472)
10 cd06377 PBP1_iGluR_NMDA_NR3 N- 99.7 1.7E-17 3.8E-22 138.6 10.9 111 3-120 251-366 (382)
11 cd06362 PBP1_mGluR Ligand bind 99.7 1E-17 2.2E-22 138.3 9.5 92 18-120 351-442 (452)
12 cd06361 PBP1_GPC6A_like Ligand 99.7 3.9E-16 8.4E-21 129.3 11.0 96 7-120 285-389 (403)
13 cd06390 PBP1_iGluR_AMPA_GluR1 99.6 3.3E-14 7.1E-19 116.8 10.7 84 22-108 265-348 (364)
14 KOG1056|consensus 99.5 1E-14 2.2E-19 131.7 7.9 91 18-120 377-467 (878)
15 cd06392 PBP1_iGluR_delta_1 N-t 99.5 2.3E-13 4.9E-18 114.1 9.1 83 22-109 297-379 (400)
16 cd06387 PBP1_iGluR_AMPA_GluR3 99.4 7.6E-13 1.6E-17 109.6 9.3 85 22-109 273-357 (372)
17 cd06389 PBP1_iGluR_AMPA_GluR2 99.4 1.6E-12 3.5E-17 106.4 9.2 84 22-108 270-353 (370)
18 cd06391 PBP1_iGluR_delta_2 N-t 99.4 1.3E-12 2.7E-17 108.9 8.7 81 22-107 297-377 (400)
19 PF01094 ANF_receptor: Recepto 99.3 4.6E-12 9.9E-17 98.5 8.7 76 19-107 272-348 (348)
20 cd06388 PBP1_iGluR_AMPA_GluR4 99.3 1.6E-11 3.5E-16 100.9 9.1 84 22-108 271-354 (371)
21 cd06380 PBP1_iGluR_AMPA N-term 99.3 3.4E-11 7.5E-16 97.2 9.3 86 21-108 276-366 (382)
22 cd06363 PBP1_Taste_receptor Li 99.2 1E-10 2.2E-15 96.1 10.1 82 23-120 310-391 (410)
23 cd06372 PBP1_GC_G_like Ligand- 99.2 7.3E-11 1.6E-15 95.8 8.6 79 20-120 300-381 (391)
24 cd06393 PBP1_iGluR_Kainate_Glu 99.1 3.5E-10 7.6E-15 92.2 8.2 76 22-108 290-366 (384)
25 KOG1053|consensus 98.9 5.2E-09 1.1E-13 95.4 8.5 109 2-121 276-384 (1258)
26 cd06370 PBP1_Speract_GC_like L 98.9 4.9E-09 1.1E-13 86.0 7.2 68 22-109 317-384 (404)
27 cd06386 PBP1_NPR_C_like Ligand 98.8 3E-08 6.5E-13 81.2 8.7 78 20-120 297-374 (387)
28 cd06373 PBP1_NPR_like Ligand b 98.7 9.3E-08 2E-12 77.8 8.2 77 21-120 308-384 (396)
29 cd06352 PBP1_NPR_GC_like Ligan 98.7 8.6E-08 1.9E-12 77.2 7.7 69 20-109 301-369 (389)
30 cd06385 PBP1_NPR_A Ligand-bind 98.6 1.9E-07 4.2E-12 76.2 8.3 77 21-120 310-386 (405)
31 cd06384 PBP1_NPR_B Ligand-bind 98.6 2.4E-07 5.1E-12 75.9 8.0 65 22-107 312-376 (399)
32 cd06383 PBP1_iGluR_AMPA_Like N 98.4 1.9E-07 4.1E-12 77.0 4.1 86 22-111 276-363 (368)
33 cd06371 PBP1_sensory_GC_DEF_li 98.3 2.1E-06 4.5E-11 70.4 6.5 64 23-108 297-360 (382)
34 KOG1054|consensus 98.0 1.8E-05 4E-10 70.5 7.8 93 22-117 300-393 (897)
35 cd06369 PBP1_GC_C_enterotoxin_ 97.9 7E-05 1.5E-09 63.3 8.4 66 20-107 285-350 (380)
36 cd06342 PBP1_ABC_LIVBP_like Ty 97.6 0.00017 3.6E-09 56.4 6.6 61 21-106 274-334 (334)
37 cd06381 PBP1_iGluR_delta_like 97.6 0.00012 2.6E-09 60.3 6.0 40 68-109 304-343 (363)
38 cd06348 PBP1_ABC_ligand_bindin 96.8 0.0028 6E-08 50.3 5.1 65 22-101 277-341 (344)
39 PRK15404 leucine ABC transport 96.7 0.0052 1.1E-07 50.2 6.3 62 23-109 301-362 (369)
40 cd06345 PBP1_ABC_ligand_bindin 96.2 0.0082 1.8E-07 47.7 4.9 50 24-99 289-338 (344)
41 KOG1055|consensus 96.1 0.0028 6.1E-08 58.0 2.0 73 24-107 344-417 (865)
42 cd06351 PBP1_iGluR_N_LIVBP_lik 95.8 0.027 5.8E-07 43.5 5.8 84 4-120 235-318 (328)
43 cd06382 PBP1_iGluR_Kainate N-t 95.8 0.0075 1.6E-07 47.5 2.8 25 81-107 286-310 (327)
44 COG0683 LivK ABC-type branched 95.3 0.086 1.9E-06 43.0 7.4 74 21-118 290-364 (366)
45 cd06338 PBP1_ABC_ligand_bindin 95.0 0.066 1.4E-06 42.2 5.8 53 24-101 289-341 (345)
46 cd06332 PBP1_aromatic_compound 94.9 0.084 1.8E-06 41.0 5.9 57 22-101 273-329 (333)
47 cd06360 PBP1_alkylbenzenes_lik 94.8 0.099 2.1E-06 40.9 6.2 59 20-101 274-332 (336)
48 cd06366 PBP1_GABAb_receptor Li 94.2 0.052 1.1E-06 43.1 3.5 38 76-120 301-338 (350)
49 KOG1052|consensus 93.9 0.28 6.1E-06 43.1 7.7 80 22-110 101-181 (656)
50 cd06347 PBP1_ABC_ligand_bindin 92.8 0.24 5.2E-06 38.5 5.0 53 24-101 278-331 (334)
51 cd06350 PBP1_GPCR_family_C_lik 92.4 0.16 3.6E-06 39.9 3.7 32 88-121 305-336 (348)
52 cd06359 PBP1_Nba_like Type I p 91.9 0.45 9.8E-06 37.6 5.6 57 22-101 273-329 (333)
53 cd06344 PBP1_ABC_ligand_bindin 91.7 0.26 5.6E-06 38.9 4.0 54 22-100 274-328 (332)
54 cd06368 PBP1_iGluR_non_NMDA_li 91.5 0.18 3.9E-06 39.4 2.9 23 83-107 285-307 (324)
55 TIGR03669 urea_ABC_arch urea A 91.3 1.1 2.4E-05 36.9 7.5 61 23-108 277-338 (374)
56 cd06331 PBP1_AmiC_like Type I 90.7 0.78 1.7E-05 36.2 5.8 50 22-96 276-325 (333)
57 cd06355 PBP1_FmdD_like Peripla 89.7 1.8 3.8E-05 34.7 7.2 48 24-96 279-327 (348)
58 cd06358 PBP1_NHase Type I peri 88.6 1.3 2.9E-05 34.9 5.8 34 65-101 296-329 (333)
59 cd06357 PBP1_AmiC Periplasmic 87.3 4 8.6E-05 32.9 7.9 49 22-95 278-326 (360)
60 TIGR03407 urea_ABC_UrtA urea A 85.9 3.3 7.2E-05 33.3 6.7 40 65-107 298-338 (359)
61 PF13458 Peripla_BP_6: Peripla 84.9 3.1 6.6E-05 32.4 5.9 62 21-107 278-339 (343)
62 cd06394 PBP1_iGluR_Kainate_KA1 84.2 2.1 4.5E-05 35.1 4.8 26 81-108 291-316 (333)
63 cd06328 PBP1_SBP_like_2 Peripl 81.7 5.1 0.00011 31.8 6.1 55 22-101 276-331 (333)
64 cd06340 PBP1_ABC_ligand_bindin 81.5 3.7 7.9E-05 32.7 5.2 55 21-100 284-343 (347)
65 cd06329 PBP1_SBP_like_3 Peripl 81.3 3.9 8.5E-05 32.4 5.3 46 22-92 285-330 (342)
66 cd06330 PBP1_Arsenic_SBP_like 79.7 5.6 0.00012 31.3 5.6 23 68-92 310-332 (346)
67 cd06346 PBP1_ABC_ligand_bindin 79.4 2.3 4.9E-05 33.3 3.3 21 79-102 289-309 (312)
68 TIGR03863 PQQ_ABC_bind ABC tra 78.9 6 0.00013 32.4 5.7 56 22-101 253-311 (347)
69 cd06327 PBP1_SBP_like_1 Peripl 77.1 5.4 0.00012 31.4 4.9 55 22-101 276-332 (334)
70 cd06336 PBP1_ABC_ligand_bindin 72.4 6 0.00013 31.5 4.0 21 77-99 322-342 (347)
71 cd06356 PBP1_Amide_Urea_BP_lik 65.8 19 0.00041 28.5 5.6 47 22-93 276-323 (334)
72 cd06337 PBP1_ABC_ligand_bindin 62.0 15 0.00032 29.5 4.4 26 66-93 317-342 (357)
73 PF13433 Peripla_BP_5: Peripla 60.8 22 0.00048 30.2 5.4 47 21-92 277-323 (363)
74 cd06339 PBP1_YraM_LppC_lipopro 56.4 12 0.00027 29.8 3.0 20 76-97 311-330 (336)
75 cd06343 PBP1_ABC_ligand_bindin 54.5 52 0.0011 26.0 6.3 64 22-108 293-359 (362)
76 PF05412 Peptidase_C33: Equine 43.4 1E+02 0.0022 22.1 5.6 63 29-104 12-74 (108)
77 PF04715 Anth_synt_I_N: Anthra 41.1 40 0.00088 23.1 3.4 37 64-108 2-38 (140)
78 KOG0608|consensus 38.4 23 0.0005 33.2 2.1 66 27-109 822-889 (1034)
79 cd06349 PBP1_ABC_ligand_bindin 34.9 1.5E+02 0.0033 23.1 6.1 30 75-107 306-336 (340)
80 TIGR02652 conserved hypothetic 33.9 40 0.00086 25.5 2.5 23 84-108 124-146 (163)
81 PF10102 DUF2341: Domain of un 32.2 70 0.0015 21.6 3.3 35 83-120 2-37 (89)
82 PF09654 DUF2396: Protein of u 32.0 43 0.00094 25.3 2.4 23 84-108 122-144 (161)
83 PRK10280 dipeptidyl carboxypep 31.1 1E+02 0.0022 28.1 5.1 59 22-86 462-527 (681)
84 COG5294 Uncharacterized protei 27.2 73 0.0016 23.0 2.8 30 88-119 70-99 (113)
85 cd05879 Ig_P0 Immunoglobulin ( 26.1 52 0.0011 22.9 1.9 44 69-114 48-95 (116)
86 cd05853 Ig6_Contactin-4 Sixth 26.0 24 0.00052 23.3 0.1 15 100-114 48-62 (85)
87 TIGR03349 IV_VI_DotU type IV / 25.1 1.4E+02 0.003 22.5 4.2 21 22-42 39-59 (183)
88 PF15000 TUSC2: Tumour suppres 22.6 35 0.00075 24.5 0.4 16 87-102 52-67 (111)
89 KOG2090|consensus 22.5 1.3E+02 0.0027 27.9 4.0 45 23-73 478-522 (704)
90 PF12401 DUF3662: Protein of u 22.3 71 0.0015 22.4 2.0 36 68-104 80-115 (116)
91 cd06326 PBP1_STKc_like Type I 22.1 2.1E+02 0.0047 22.0 4.9 30 65-96 300-329 (336)
No 1
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=99.89 E-value=4e-23 Score=175.80 Aligned_cols=100 Identities=18% Similarity=0.296 Sum_probs=85.4
Q ss_pred ecCcchhHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCC
Q psy13446 14 FDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTAD 93 (121)
Q Consensus 14 ~d~s~~~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~ 93 (121)
+|.+..+.+++|++||||+|||||+|+.|..+.++ + +...|..... .+|++|++|||||+|+|.+|++ |.||++
T Consensus 389 ~~~~~~~~~~~v~~AVyAvAhaLh~~~~c~~~~~~-~-~~~~c~~~~~---~~~~~l~~~L~~v~F~~~~g~~-v~Fd~~ 462 (510)
T cd06364 389 LDYTHLRISYNVYLAVYSIAHALQDIYTCTPGKGL-F-TNGSCADIKK---VEAWQVLKHLRHLNFTDNMGEQ-VRFDEG 462 (510)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCCC-c-cCCCCCCCCC---CCHHHHHHHHHhcEEecCCCCE-EEEecC
Confidence 35556778899999999999999999999765543 2 3345988643 8999999999999999999987 999999
Q ss_pred CCcccceeEEEEeeecC-CCCceEEecc
Q psy13446 94 GVLKAAELKIMNLRPNL-GSQLKWEEST 120 (121)
Q Consensus 94 Gd~~~a~YdIvN~q~~~-~g~~~w~~VG 120 (121)
||+ .+.|||+|||+.. +|.+.+++||
T Consensus 463 Gd~-~~~YdI~n~q~~~~~~~~~~v~VG 489 (510)
T cd06364 463 GDL-VGNYSIINWHLSPEDGSVVFKEVG 489 (510)
T ss_pred CCC-ccceeEEEeeecCCCCcEEEEEEE
Confidence 999 8999999999865 6788999998
No 2
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=99.86 E-value=1.1e-21 Score=164.91 Aligned_cols=96 Identities=11% Similarity=0.079 Sum_probs=80.0
Q ss_pred cCcchhHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCC
Q psy13446 15 DTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADG 94 (121)
Q Consensus 15 d~s~~~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~G 94 (121)
+.+.++++.+|+|||||+|||||+|++|..... +...|.. . -..|++|.+|||||+|+|.+|++ |.||+||
T Consensus 353 ~~~~~~~~~~v~dAVya~AhALh~~l~c~~~~~----~~~~~~~-~---~~~~~~l~~~l~~v~F~~~~g~~-v~Fd~nG 423 (469)
T cd06365 353 DMAMSEESYNVYNAVYAVAHALHEMLLQQVETQ----SENNGKR-L---IFLPWQLHSFLKNIQFKNPAGDE-VNLNQKR 423 (469)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC----CcCCCCC-C---CccHHHHHHHHHhccccCCCCCE-EEecCCC
Confidence 444567789999999999999999999854322 3344543 2 27899999999999999999987 9999999
Q ss_pred CcccceeEEEEeeecCCCCceEEecc
Q psy13446 95 VLKAAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 95 d~~~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
|+ .+.|||+|||...++...+++||
T Consensus 424 d~-~~~YdI~n~q~~~~~~~~~~~VG 448 (469)
T cd06365 424 KL-DTEYDILNYWNFPQGLGLKVKVG 448 (469)
T ss_pred Cc-CceeeEEEEEECCCCCEEEEEEE
Confidence 99 89999999997666788899998
No 3
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=99.85 E-value=4.9e-21 Score=160.69 Aligned_cols=94 Identities=21% Similarity=0.285 Sum_probs=78.1
Q ss_pred cchhHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHH-HHHhcceee-----ccCCCcceEE
Q psy13446 17 SSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFY-RYLRNVSVE-----GDTGKPNVEF 90 (121)
Q Consensus 17 s~~~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~-~yLrnv~f~-----g~~G~~~V~F 90 (121)
+..+.+.+|++||||+|||||+|+.|.-+. .+..|..+.. .+|++|+ +|||||+|+ |.+|++ |.|
T Consensus 350 ~~~~~~~~v~~AVyA~AhaLh~~l~~~c~~-----~~~~c~~~~~---~~~~~l~~~~L~~v~F~~~~~~~~~g~~-v~F 420 (458)
T cd06375 350 EQESKIMFVVNAVYAMAHALHNMQRDLCPN-----TTKLCDAMKP---LDGKKLYKEYLLNVSFTAPFRPDLADSE-VKF 420 (458)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCCCCCCCC---CCHHHHHHHHHHhccccccccCCCCCCe-eEE
Confidence 456779999999999999999999542211 1134988643 8999999 599999999 899987 999
Q ss_pred CCCCCcccceeEEEEeeecCCC-CceEEecc
Q psy13446 91 TADGVLKAAELKIMNLRPNLGS-QLKWEEST 120 (121)
Q Consensus 91 d~~Gd~~~a~YdIvN~q~~~~g-~~~w~~VG 120 (121)
|+|||+ .+.|||+|||....+ .+.+++||
T Consensus 421 d~nGd~-~~~YdI~n~q~~~~~~~~~~~~VG 450 (458)
T cd06375 421 DSQGDG-LGRYNIFNYQRTGNSYGYRYVGVG 450 (458)
T ss_pred CCCCCC-CcceEEEEEEEcCCCCcEEEEEEE
Confidence 999999 899999999986655 78899998
No 4
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=99.83 E-value=2.8e-20 Score=149.12 Aligned_cols=109 Identities=30% Similarity=0.472 Sum_probs=90.9
Q ss_pred ccccceeeeEEecCcchhHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeecc
Q psy13446 3 VEVREKKKGVHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGD 82 (121)
Q Consensus 3 ~~~p~g~lgv~~d~s~~~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~ 82 (121)
.++|.|++|+++..+. ....+++||||++||||+++++|..... .+..+|......+|.+|..|++||+|++|+|.
T Consensus 240 ~~~~~G~~g~~~~~~~-~~~~~~~Dav~~~a~Al~~~~~~~~~~~---~~~~~C~~~~~~~~~~g~~l~~~l~~~~f~G~ 315 (362)
T cd06367 240 EGLPVGLLGVGLDTWY-SLEARVRDAVAIVARAAESLLRDKGALP---EPPVNCYDTANKRESSGQYLARFLMNVTFDGE 315 (362)
T ss_pred cCCCCeeEEEEecccc-cHHHHHHHHHHHHHHHHHHHHHhcCCCC---CCCCCcCCCCCCCCCchHHHHHHHhcccccCC
Confidence 3688999999999864 4488999999999999999987733222 24567998642349999999999999999999
Q ss_pred CCCcceEECCCCCcccceeEEEEeeecCCCCceEEeccC
Q psy13446 83 TGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEESTL 121 (121)
Q Consensus 83 ~G~~~V~Fd~~Gd~~~a~YdIvN~q~~~~g~~~w~~VG~ 121 (121)
+|+ |.||+|||+..+.|||+|+|+ ...|++||.
T Consensus 316 tg~--v~F~~~G~~~~~~~~I~~l~~----~~~~~~VG~ 348 (362)
T cd06367 316 TGD--VSFNEDGYLSNPKLVIINLRR----NRKWERVGS 348 (362)
T ss_pred CCc--eeECCCcccccceEEEEEecC----CCcceEEEE
Confidence 995 999999999889999999996 467888873
No 5
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=99.80 E-value=2e-19 Score=150.03 Aligned_cols=93 Identities=19% Similarity=0.288 Sum_probs=77.9
Q ss_pred chhHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcc
Q psy13446 18 SASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLK 97 (121)
Q Consensus 18 ~~~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~ 97 (121)
..+.++.|+|||||+|||||+|+.|.- .+ +...|... . |.+|++|++|||+|+|+|.+|++ |.||++||+
T Consensus 356 ~~~~~~~v~dAVyaiA~ALh~l~~~~c-~~----~~~~C~~~--~-~~~~~~l~~~L~~v~F~g~tg~~-v~Fd~~G~~- 425 (463)
T cd06376 356 QEGKVQFVIDAVYAMAHALHSMHKDLC-PG----YTGVCPEM--E-PADGKKLLKYIRAVNFNGSAGTP-VMFNENGDA- 425 (463)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhC-CC----CCCCCccC--C-CCCHHHHHHHHHhCCccCCCCCe-EEeCCCCCC-
Confidence 345688999999999999999984421 12 22349774 2 89999999999999999999987 999999999
Q ss_pred cceeEEEEeeecCCCCceEEecc
Q psy13446 98 AAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 98 ~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
.++|||+|||....+...+++||
T Consensus 426 ~~~Ydi~n~q~~~~~~~~~~~VG 448 (463)
T cd06376 426 PGRYDIFQYQITNTSSPGYRLIG 448 (463)
T ss_pred CCceEEEEEEecCCCceeEEEEE
Confidence 77999999998766788899998
No 6
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=99.79 E-value=5.1e-19 Score=143.03 Aligned_cols=104 Identities=26% Similarity=0.402 Sum_probs=86.3
Q ss_pred cccceeeeEEecCcchhHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccC
Q psy13446 4 EVREKKKGVHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDT 83 (121)
Q Consensus 4 ~~p~g~lgv~~d~s~~~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~ 83 (121)
.+|.|++|+++...... ..+++||||++||||++|++|.. .+ .++.+|.... ..|..|++|++||++++|+|.+
T Consensus 256 ~~~~g~~g~~~~~~~~~-~~~~yDAV~~~A~Al~~~~~~~~-~~---~~~~~c~~~~-~~~~~g~~l~~~l~~v~f~G~t 329 (377)
T cd06379 256 NAPDGVLGLQLINGKNE-SSHIRDAVAVLASAIQELFEKEN-IT---EPPRECVGNT-VIWETGPLFKRALMSSKYPGET 329 (377)
T ss_pred cCCCceEEEEECCCCCH-HHHHHHHHHHHHHHHHHHHcCCC-CC---CCCccccCCC-CCCcchHHHHHHHHhCCcCCcc
Confidence 46789999999887655 78999999999999999986522 22 2345698753 3599999999999999999999
Q ss_pred CCcceEECCCCCcccceeEEEEeeecCCCCceEEecc
Q psy13446 84 GKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 84 G~~~V~Fd~~Gd~~~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
|+ |.||++||++.+.|||+|||. ..|++||
T Consensus 330 g~--i~Fd~~Gd~~~~~~~I~~~~~-----~~~~~VG 359 (377)
T cd06379 330 GR--VEFNDDGDRKFANYDIMNIQN-----RKLVQVG 359 (377)
T ss_pred Cc--eEECCCCCccCccEEEEEecC-----CCceEee
Confidence 95 999999999889999999995 2477776
No 7
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=99.79 E-value=6.1e-19 Score=144.83 Aligned_cols=106 Identities=26% Similarity=0.387 Sum_probs=88.9
Q ss_pred cccceeeeEEecCcchhHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccC
Q psy13446 4 EVREKKKGVHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDT 83 (121)
Q Consensus 4 ~~p~g~lgv~~d~s~~~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~ 83 (121)
+.|.|++|++++.++.++.+.++|||+++|+|+++|++...+.. .++.+|.+.....|..|..|++||++++|+|
T Consensus 241 ~~~~G~i~v~~~~w~~~~~a~~~DaV~vva~Al~~l~~~~~~~~---~~~~~C~~~~~~~~~~G~~l~~~l~~v~~~G-- 315 (362)
T cd06378 241 EFPVGLISVSYDGWRYSLRARVRDGVAIIATGASAMLRQHGFIP---EAKGSCYGQAEKRDLPPNTLHRYMMNVTWEG-- 315 (362)
T ss_pred cCCcceEeeccccccccHHHHHHHHHHHHHHHHHHHHhccCCCC---CCCCCcCCCCCCCCCchHHHHHHhhcceECC--
Confidence 57899999999999878899999999999999999985433332 3566798764345999999999999999988
Q ss_pred CCcceEECCCCCcccceeEEEEeeecCCCCceEEecc
Q psy13446 84 GKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 84 G~~~V~Fd~~Gd~~~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
.+ |+||++|+++++.|||||++. ...|++||
T Consensus 316 -~~-i~F~~~G~r~~~~ldIinl~~----~~g~~kVG 346 (362)
T cd06378 316 -RD-LSFTEDGYLVNPKLVVISLNK----ERVWEEVG 346 (362)
T ss_pred -Cc-eeECCCCeEccceEEEEEecC----CCCceEEE
Confidence 33 999999999999999999984 34677777
No 8
>KOG4440|consensus
Probab=99.78 E-value=2.5e-19 Score=157.09 Aligned_cols=97 Identities=26% Similarity=0.384 Sum_probs=87.2
Q ss_pred cccceeeeEEecCcchhHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhccee-ecc
Q psy13446 4 EVREKKKGVHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSV-EGD 82 (121)
Q Consensus 4 ~~p~g~lgv~~d~s~~~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f-~g~ 82 (121)
.+|.|.||++|.+..++ ..||+|+|+++|+|+|+|+ ..++++. +|..|-+.. .+|.+|..|++||+...+ +|+
T Consensus 267 n~PdG~LGlqL~~~~~~-~~hirDsv~vlasAv~e~~-~~e~I~~---~P~~c~d~~-~~w~~g~~l~~~l~s~~~~~g~ 340 (993)
T KOG4440|consen 267 NLPDGILGLQLINGKNE-SAHIRDSVGVLASAVHELL-EKENITD---PPRGCVDNT-NIWKTGPLLKRVLMSSKYADGV 340 (993)
T ss_pred CCCCceeeeEeecCccc-cceehhhHHHHHHHHHHHH-hhccCCC---CCCcccCcc-chhcccHHHHHHHhhhcccCCc
Confidence 47999999999999999 9999999999999999998 4577875 555587775 789999999999998777 899
Q ss_pred CCCcceEECCCCCcccceeEEEEeee
Q psy13446 83 TGKPNVEFTADGVLKAAELKIMNLRP 108 (121)
Q Consensus 83 ~G~~~V~Fd~~Gd~~~a~YdIvN~q~ 108 (121)
||+ |+||+|||++.|+|||||+++
T Consensus 341 Tgr--V~Fnd~gdRi~a~YdiiN~hq 364 (993)
T KOG4440|consen 341 TGR--VEFNDDGDRIFANYDIINLHQ 364 (993)
T ss_pred cee--EEEcCCCceeeccceeEehhh
Confidence 998 999999999999999999954
No 9
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=99.77 E-value=1.3e-18 Score=145.61 Aligned_cols=89 Identities=22% Similarity=0.304 Sum_probs=75.1
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
...++|||||+|||||+|+.|.- .+ +...|.... +.+|++|++||++++|+|.+|++ |.||++||+ .+.|
T Consensus 372 ~~~vyDAVyaiA~ALh~~~~~~~-~~----~~~~c~~~~---~~~~~~l~~~l~~v~F~g~tG~~-v~Fd~~G~~-~~~y 441 (472)
T cd06374 372 MGFVINAIYAMAHGLHNMHQDLC-PG----HVGLCDAMK---PIDGRKLLEYLLKTSFSGVSGEE-VYFDENGDS-PGRY 441 (472)
T ss_pred eHHHHHHHHHHHHHHHHHHHhhC-CC----CCCCCcCCC---CCCHHHHHHHHHhCcccCCCCCe-EEEcCCCCC-CCce
Confidence 55899999999999999985532 11 223488752 58999999999999999999977 999999999 6799
Q ss_pred EEEEeeecCCCCceEEecc
Q psy13446 102 KIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 102 dIvN~q~~~~g~~~w~~VG 120 (121)
||+|||...++...+++||
T Consensus 442 dI~n~~~~~~~~~~~~~VG 460 (472)
T cd06374 442 DIMNLQYTEDLRFDYINVG 460 (472)
T ss_pred EEEEEEECCCCCEEEEEEE
Confidence 9999998667788999998
No 10
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=99.74 E-value=1.7e-17 Score=138.64 Aligned_cols=111 Identities=19% Similarity=0.237 Sum_probs=89.6
Q ss_pred ccccceeeeEEecCcchhHHHhHHHHHHHHHHHHHHHh-cCc-ccCCCCCCCCCCCCCCCCC-ccCchhHHHHHHhccee
Q psy13446 3 VEVREKKKGVHFDTSSASLVQGISTAIKVYAYGVEDYM-SDS-SNANLSLNTQLSCDGVGES-RWKTGDRFYRYLRNVSV 79 (121)
Q Consensus 3 ~~~p~g~lgv~~d~s~~~~~~~I~~AVyv~A~al~~~~-~~~-~~~~~~~~~~~~C~~~~~~-~w~~g~~l~~yLrnv~f 79 (121)
..+|+|+|+++ ......+.+.|+|||+++|.|++++. ..+ .... .++.+|.+.++. .|.+|..|++||+|++|
T Consensus 251 ~g~nigLl~~~-~~~~~~l~ali~DAV~lvA~a~~~l~~~~~~~~l~---~~~~~C~~~~~~~~W~~G~~l~~~Lknv~~ 326 (382)
T cd06377 251 EGLPPGLLAHG-ETTQPPLEAYVQDALELVARAVGSATLVQPELALI---PATVNCMDLPTKGNESSGQYLARFLANTSF 326 (382)
T ss_pred CCCCceEEEEe-ecccccHHHHHHHHHHHHHHHHHHhhhcccccccC---CCCCCcccCCCCCCCCchHHHHHHHHhCcc
Confidence 47899999986 44444669999999999999999762 222 2333 245789875434 79999999999999999
Q ss_pred eccCCCcceEECCCCCc--ccceeEEEEeeecCCCCceEEecc
Q psy13446 80 EGDTGKPNVEFTADGVL--KAAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 80 ~g~~G~~~V~Fd~~Gd~--~~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
+|.||+ |+|+. |-+ ++..+||++++++..|.-.|++||
T Consensus 327 eGlTG~--I~F~~-g~R~~~~~~l~I~~L~~~~~G~~~W~kVG 366 (382)
T cd06377 327 DGRTGP--VWVTG-SSQVHSSRHFKVWSLRRDPVGQPTWTTVG 366 (382)
T ss_pred ccccee--EEEcc-CeeecccceEEEEEeccccCCCccceEEE
Confidence 999996 99965 666 689999999998777766999998
No 11
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=99.74 E-value=1e-17 Score=138.28 Aligned_cols=92 Identities=27% Similarity=0.373 Sum_probs=75.4
Q ss_pred chhHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcc
Q psy13446 18 SASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLK 97 (121)
Q Consensus 18 ~~~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~ 97 (121)
..+....++||||++|||||+|++|..+. ....|... .|.+|++|.+||+|++|+|.+|++ |.||++||+
T Consensus 351 ~~~~~~~vyDAV~a~A~AL~~~l~~~~~~-----~~~~c~~~---~~~~~~~l~~~l~~v~f~g~tg~~-v~Fd~~G~~- 420 (452)
T cd06362 351 QESKVQFVIDAVYAMAHALHNMHRDLCPG-----TTGLCDAM---KPIDGRKLLFYLRNVSFSGLAGGP-VRFDANGDG- 420 (452)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhCCC-----CCCCCcCc---cCCCHHHHHHHHHhCCcCCCCCce-EEECCCCCC-
Confidence 34467899999999999999998653221 12348763 278999999999999999999976 999999999
Q ss_pred cceeEEEEeeecCCCCceEEecc
Q psy13446 98 AAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 98 ~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
.+.|||+|||.. .+...+++||
T Consensus 421 ~~~y~I~~~~~~-~~~~~~~~VG 442 (452)
T cd06362 421 PGRYDIFNYQRT-NGKYDYVKVG 442 (452)
T ss_pred CCceEEEEEEEc-CCceEEEEEE
Confidence 779999999973 3678889998
No 12
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=99.67 E-value=3.9e-16 Score=129.27 Aligned_cols=96 Identities=19% Similarity=0.251 Sum_probs=78.9
Q ss_pred ceeeeEEecCcchh---------HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcc
Q psy13446 7 EKKKGVHFDTSSAS---------LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNV 77 (121)
Q Consensus 7 ~g~lgv~~d~s~~~---------~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv 77 (121)
.|+||+.+...... ....+++|||++|||||++++| ..|..... .+|++|.++|+++
T Consensus 285 ~g~ig~~~~~~~~~~F~~~~~~~~~~~v~~AVyaiA~Al~~~~~~-----------~~c~~~~~---~~~~~l~~~L~~~ 350 (403)
T cd06361 285 GKVVGFTFKSGNISSFHQFLKNLLIHSIQLAVFALAHAIRDLCQE-----------RQCQNPNA---FQPWELLGQLKNV 350 (403)
T ss_pred ceEEEEEecCCccchHHHHHHHhhHHHHHHHHHHHHHHHHHhccC-----------CCCCCCCC---cCHHHHHHHHhee
Confidence 48999999775322 1347899999999999987644 13877532 7899999999999
Q ss_pred eeeccCCCcceEECCCCCcccceeEEEEeeecCCCCceEEecc
Q psy13446 78 SVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 78 ~f~g~~G~~~V~Fd~~Gd~~~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
+|+|.+| + |.||++||+ .+.|||+|||. .+|...|++||
T Consensus 351 ~f~g~~~-~-v~Fd~~gd~-~~~y~I~~~~~-~~~~~~~~~vg 389 (403)
T cd06361 351 TFEDGGN-M-YHFDANGDL-NLGYDVVLWKE-DNGHMTVTIMA 389 (403)
T ss_pred EEecCCc-e-EEECCCCCC-CcceEEEEeEe-cCCcEEEEEEE
Confidence 9999844 4 999999999 88999999998 55788899998
No 13
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.55 E-value=3.3e-14 Score=116.82 Aligned_cols=84 Identities=19% Similarity=0.285 Sum_probs=68.3
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
....||||+++|+|++.|.+...+... ..++.+|.......|..|..|++||++++|+|.||+ |.||++|++....|
T Consensus 265 ~~l~yDaV~~~A~A~~~l~~~~~~~~~-~~~~~~C~~~~~~~w~~G~~l~~~i~~~~f~GlTG~--i~F~~~G~r~~~~~ 341 (364)
T cd06390 265 SALTYDGVRVMAEAFQNLRKQRIDISR-RGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGN--VQFNEKGRRTNYTL 341 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccc-CCCCCCCCCCCCCCCccHHHHHHHHHhhcccccccc--eeeCCCCCcccceE
Confidence 468999999999999998754222221 223346977533569999999999999999999997 99999999999999
Q ss_pred EEEEeee
Q psy13446 102 KIMNLRP 108 (121)
Q Consensus 102 dIvN~q~ 108 (121)
+|+|+++
T Consensus 342 ~I~~~~~ 348 (364)
T cd06390 342 HVIEMKH 348 (364)
T ss_pred EEEEecC
Confidence 9999984
No 14
>KOG1056|consensus
Probab=99.55 E-value=1e-14 Score=131.71 Aligned_cols=91 Identities=25% Similarity=0.386 Sum_probs=74.6
Q ss_pred chhHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcc
Q psy13446 18 SASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLK 97 (121)
Q Consensus 18 ~~~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~ 97 (121)
+....+.|.+|||++|||||+|++|--.. .++. |..+.. .+|++|++||+||+|.+..|. |.||++||.
T Consensus 377 q~~k~~~Vi~aVya~A~aLh~m~~~lc~~----~~~~-C~~m~~---~dg~~L~~~l~~vnF~~~~~~--v~Fd~~gD~- 445 (878)
T KOG1056|consen 377 QDSKVQFVIDAVYAMAHALHNMHQDLCPG----TSGL-CSAMKA---IDGSLLLKYLLNVNFTGPAGS--VRFDENGDG- 445 (878)
T ss_pred hhcccccHHHHHHHHHHHHHHHHHhhcCC----cccc-CcCccc---cCHHHHHhhhheeEEecCCCc--eeecCCCCC-
Confidence 44468899999999999999998773321 2334 999864 899999999999999998886 999999999
Q ss_pred cceeEEEEeeecCCCCceEEecc
Q psy13446 98 AAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 98 ~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
.+.|||+|||..... +.+.+||
T Consensus 446 ~~~y~I~~~~~~~~~-~~y~~vg 467 (878)
T KOG1056|consen 446 PGRYDILNYQLTNGS-YTYKEVG 467 (878)
T ss_pred ccceeEEEeeccCCC-ccceeee
Confidence 999999999976533 5555555
No 15
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=99.46 E-value=2.3e-13 Score=114.10 Aligned_cols=83 Identities=17% Similarity=0.312 Sum_probs=70.1
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
.+..||||+++|+|++.|++.+...+. ...+|.......|..|..|++||++++|+|-||+ |.||++|.+.+..|
T Consensus 297 aalayDaV~~~A~Al~~ll~~~~~~~~---~~l~C~~~~~~~w~~G~~ll~~ik~v~f~GLTG~--I~F~~~G~r~~~~l 371 (400)
T cd06392 297 NLYLYDSVLMLANAFHRKLEDRKWHSM---ASLNCIRKSTKPWNGGRSMLETIKKGHITGLTGV--MEFKEDGANPHVQF 371 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCC---CCCccCCCCCCCCCChHHHHHHHHhCCCccCccc--eeECCCCCCcCCce
Confidence 467899999999999998865555543 4467954323569999999999999999999997 99999999999999
Q ss_pred EEEEeeec
Q psy13446 102 KIMNLRPN 109 (121)
Q Consensus 102 dIvN~q~~ 109 (121)
||+|++..
T Consensus 372 dIi~l~~~ 379 (400)
T cd06392 372 EILGTSYS 379 (400)
T ss_pred EEEecccc
Confidence 99999854
No 16
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.42 E-value=7.6e-13 Score=109.59 Aligned_cols=85 Identities=20% Similarity=0.277 Sum_probs=68.9
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
....+|||+++|+|++.+.+....... ..++.+|.......|..|..|.+||++++|+|.||+ |.||++|.|.+..|
T Consensus 273 ~al~yDaV~~~A~A~~~l~~~~~~~~~-~~~~~~C~~~~~~~W~~G~~l~~~ik~v~~~GLTG~--i~F~~~G~R~~~~l 349 (372)
T cd06387 273 SALTHDAILVIAEAFRYLRRQRVDVSR-RGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGN--IQFDTYGRRTNYTI 349 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccc-CCCCCCcCCCCCCCccchHHHHHHHHhcccCCCccc--eeeCCCCCcccceE
Confidence 468999999999999988643222221 223457976533569999999999999999999997 99999999999999
Q ss_pred EEEEeeec
Q psy13446 102 KIMNLRPN 109 (121)
Q Consensus 102 dIvN~q~~ 109 (121)
||||+.+.
T Consensus 350 dIinl~~~ 357 (372)
T cd06387 350 DVYEMKPS 357 (372)
T ss_pred EEEEecCC
Confidence 99999853
No 17
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.39 E-value=1.6e-12 Score=106.38 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=67.9
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
.+-.+|||+++|.|++.+.+......+ ..++.+|.......|.+|..|.+||++++|+|.||+ |.||++|+|....+
T Consensus 270 aAl~yDAV~v~a~A~~~l~~~~~~~~~-~~~~~~C~~~~~~~w~~G~~i~~~l~~~~~~GlTG~--i~Fd~~G~r~~~~~ 346 (370)
T cd06389 270 SALTYDAVQVMTEAFRNLRKQRIEISR-RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLTGN--IKFDQNGKRINYTI 346 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccc-CCCCCCcCCCCCCCCCCcHHHHHHHHhcccCccccc--eEeCCCCccccceE
Confidence 566899999999999988543222211 234557976533569999999999999999999997 99999999988899
Q ss_pred EEEEeee
Q psy13446 102 KIMNLRP 108 (121)
Q Consensus 102 dIvN~q~ 108 (121)
+|++++.
T Consensus 347 ~ii~l~~ 353 (370)
T cd06389 347 NVMELKS 353 (370)
T ss_pred EEEEecC
Confidence 9999984
No 18
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=99.39 E-value=1.3e-12 Score=108.88 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=68.6
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
....||||.++|+|++.+.+.....++ +..+|.......|..|..|++||++++|+|.||+ |.||++|.|.+..|
T Consensus 297 ~alayDaV~~~A~A~~~l~~~~~~~~~---~~~~c~~~~~~~w~~G~~ll~~i~~~~f~GlTG~--i~f~~~g~r~~~~~ 371 (400)
T cd06391 297 NLYIYDTVLLLANAFHKKLEDRKWHSM---ASLSCIRKNSKPWQGGRSMLETIKKGGVSGLTGE--LEFNENGGNPNVHF 371 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccccCC---CCcccccCCCCCCCChHHHHHHHHhcCcccceec--eEECCCCCccCCce
Confidence 567899999999999988644333432 5567987533579999999999999999999997 99999999999999
Q ss_pred EEEEee
Q psy13446 102 KIMNLR 107 (121)
Q Consensus 102 dIvN~q 107 (121)
||||+.
T Consensus 372 dIin~~ 377 (400)
T cd06391 372 EILGTN 377 (400)
T ss_pred EEEEee
Confidence 999996
No 19
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=99.34 E-value=4.6e-12 Score=98.49 Aligned_cols=76 Identities=29% Similarity=0.540 Sum_probs=62.4
Q ss_pred hhHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECC-CCCcc
Q psy13446 19 ASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTA-DGVLK 97 (121)
Q Consensus 19 ~~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~-~Gd~~ 97 (121)
......++|||+++|+||+.++.+..... ... ..|..|.+|.++|++++|+|.+|+ |.||+ +|++.
T Consensus 272 ~~~~~~~yDAv~~~a~al~~~~~~~~~~~---------~~~--~~~~~g~~l~~~l~~~~f~G~tG~--v~f~~~~G~~~ 338 (348)
T PF01094_consen 272 SPYAAYAYDAVYLLAHALNRALQDGGPVT---------NGR--NPWQNGSQLLKYLRNVSFEGLTGR--VSFDSNDGDRT 338 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSTTT---------SSS--GTSTTHHHHHHHHHTEEEEETTEE--EEEETTTSBEE
T ss_pred ceeeeeehhhhHHHHHHHHHHHHhccCCC---------CCc--cccccHHHHHHHHhheeeeCCCCC--EEEeCCCCCcC
Confidence 34577899999999999999975422221 111 238999999999999999999996 99999 99999
Q ss_pred cceeEEEEee
Q psy13446 98 AAELKIMNLR 107 (121)
Q Consensus 98 ~a~YdIvN~q 107 (121)
+..|+|+|||
T Consensus 339 ~~~~~i~~~~ 348 (348)
T PF01094_consen 339 NYDYDILNMQ 348 (348)
T ss_dssp SEEEEEEEE-
T ss_pred CCEEEEEECC
Confidence 9999999997
No 20
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=99.28 E-value=1.6e-11 Score=100.91 Aligned_cols=84 Identities=17% Similarity=0.261 Sum_probs=66.5
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
.+-.|||||++|.|++.+.+...... ...++.+|.......|..|..|.+||++++|+|.||+ |.||++|+|+...+
T Consensus 271 aAl~YDaV~l~a~A~~~l~~~~~~~~-~~~~~~~C~~~~~~~w~~G~~i~~~lk~~~~~GlTG~--i~Fd~~G~r~~~~l 347 (371)
T cd06388 271 SALTYDGVLVMAEAFRNLRRQKIDIS-RRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGN--IQFDHYGRRVNYTM 347 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcc-cCCCCCCcCCCCCCCCcccHHHHHHHHhcCcCCCccc--eeECCCCCcccceE
Confidence 67899999999999998753211111 1123446966433569999999999999999999997 99999999988899
Q ss_pred EEEEeee
Q psy13446 102 KIMNLRP 108 (121)
Q Consensus 102 dIvN~q~ 108 (121)
+||+++.
T Consensus 348 ~Ii~l~~ 354 (371)
T cd06388 348 DVFELKS 354 (371)
T ss_pred EEEEccC
Confidence 9999974
No 21
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=99.25 E-value=3.4e-11 Score=97.24 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=68.4
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCccc----CCC-CCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCC
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSN----ANL-SLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGV 95 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~----~~~-~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd 95 (121)
.....||||+++|+|++.+.+...+ ... ...+..+|.......|.+|..|.++|++++|+|.+|+ |.||++|+
T Consensus 276 ~aa~aYDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~g~~i~~~l~~~~~~G~tG~--i~Fd~~G~ 353 (382)
T cd06380 276 TAALAHDAVLVMAEAFRSLRRQRGSGRHRIDISRRGNGGDCLANPAVPWEHGIDIERALKKVQFEGLTGN--VQFDEFGQ 353 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCcCCCCCCCCccchHHHHHHHHhcccCCcccc--eEECCCCC
Confidence 3568999999999999988633210 111 1345667987643569999999999999999999997 99999999
Q ss_pred cccceeEEEEeee
Q psy13446 96 LKAAELKIMNLRP 108 (121)
Q Consensus 96 ~~~a~YdIvN~q~ 108 (121)
+....|+|++++.
T Consensus 354 ~~~~~~~i~~~~~ 366 (382)
T cd06380 354 RTNYTLDVVELKT 366 (382)
T ss_pred cccccEEEEEecC
Confidence 9888999999984
No 22
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=99.21 E-value=1e-10 Score=96.10 Aligned_cols=82 Identities=16% Similarity=0.041 Sum_probs=67.2
Q ss_pred HhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccceeE
Q psy13446 23 QGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELK 102 (121)
Q Consensus 23 ~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Yd 102 (121)
..+|||||++|+||+.+++|.. ..|...+ +.+++.|.++|++++|+|.+|+ |.||++||+ ...|+
T Consensus 310 ~~~YDaV~~~a~Al~~a~~~~~---------~~~~~~~---~~~~~~l~~~L~~~~~~g~~g~--i~fd~~G~~-~~~~~ 374 (410)
T cd06363 310 FSVYAAVYAVAHALHNVLQCGS---------GGCPKRV---PVYPWQLLEELKKVNFTLLGQT--VRFDENGDP-NFGYD 374 (410)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC---------CCCCCCC---CCCHHHHHHHHhccEEecCCcE--EEeCCCCCC-ccceE
Confidence 5689999999999999986521 1276433 3789999999999999999995 999999997 66899
Q ss_pred EEEeeecCCCCceEEecc
Q psy13446 103 IMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 103 IvN~q~~~~g~~~w~~VG 120 (121)
|++++... +...+++||
T Consensus 375 i~~~~~~~-~~~~~~~vG 391 (410)
T cd06363 375 IVVWWWDN-SSGTFEEVG 391 (410)
T ss_pred EEEEEEcC-CceeEEEEE
Confidence 99998732 567888888
No 23
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=99.20 E-value=7.3e-11 Score=95.78 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=64.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHh---cceeeccCCCcceEECCCCCc
Q psy13446 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLR---NVSVEGDTGKPNVEFTADGVL 96 (121)
Q Consensus 20 ~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLr---nv~f~g~~G~~~V~Fd~~Gd~ 96 (121)
.....++||||++|+||+.++++. ..|.+|.+|.++|+ +++|+|.+|+ |.||++||+
T Consensus 300 ~~a~~~yDav~~~A~Al~~~~~~g------------------~~~~~g~~l~~~l~~~~~~~f~G~tG~--v~fd~~G~r 359 (391)
T cd06372 300 PYSAYLHDAVLLYALAVKEMLKAG------------------KDFRNGRQLVSTLRGANQVELQGITGL--VLLDEQGKR 359 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC------------------CCCCCHHHHHHHHhhccCceEecccee--EEECCCCCc
Confidence 356789999999999999887431 11678899999999 6999999995 999999999
Q ss_pred ccceeEEEEeeecCCCCceEEecc
Q psy13446 97 KAAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 97 ~~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
.+.|+|.|+|.... ....+.||
T Consensus 360 -~~~y~i~~~~~~~~-~~~~~~vg 381 (391)
T cd06372 360 -QMDYSVYALQKSGN-SSLFLPFL 381 (391)
T ss_pred -ceeEEEEeccccCC-ccceeeEE
Confidence 89999999995332 23466665
No 24
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=99.09 E-value=3.5e-10 Score=92.22 Aligned_cols=76 Identities=21% Similarity=0.448 Sum_probs=63.5
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECC-CCCcccce
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTA-DGVLKAAE 100 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~-~Gd~~~a~ 100 (121)
.+..|||||++|+|++... ..+ .++.+|+.. ..|..|..|.++|++++|+|.||+ |.||+ +|.|.+..
T Consensus 290 aal~yDav~~~a~A~~~~~----~~~---~~~~~c~~~--~~w~~G~~i~~~l~~~~~~GltG~--i~Fd~~~g~r~~~~ 358 (384)
T cd06393 290 AALLYDAVHMVSVCYQRAP----QMT---VNSLQCHRH--KAWRFGGRFMNFIKEAQWEGLTGR--IVFNKTSGLRTDFD 358 (384)
T ss_pred hHHhhhhHHHHHHHHhhhh----hcC---CCCCCCCCC--CCCcccHHHHHHHhheeecccccc--eEecCCCCeeeeeE
Confidence 6788999999999998442 112 245569886 459999999999999999999997 99996 67888999
Q ss_pred eEEEEeee
Q psy13446 101 LKIMNLRP 108 (121)
Q Consensus 101 YdIvN~q~ 108 (121)
|||||+..
T Consensus 359 ~~i~~~~~ 366 (384)
T cd06393 359 LDIISLKE 366 (384)
T ss_pred EEEEEecC
Confidence 99999984
No 25
>KOG1053|consensus
Probab=98.90 E-value=5.2e-09 Score=95.41 Aligned_cols=109 Identities=22% Similarity=0.398 Sum_probs=91.5
Q ss_pred cccccceeeeEEecCcchhHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeec
Q psy13446 2 KVEVREKKKGVHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEG 81 (121)
Q Consensus 2 ~~~~p~g~lgv~~d~s~~~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g 81 (121)
.++.|.|++.|..++++..+.+.|+|+|.++|-|..+|+.. .++-.++..+|......+=-++..|.+||+|++|+|
T Consensus 276 pa~~P~GLisv~~~~w~~~l~~rVrdgvaiva~aa~s~~~~---~~~lp~~~~~C~~~~~~~~~~~~~l~r~l~NvT~~g 352 (1258)
T KOG1053|consen 276 PAEFPLGLISVSYDTWRYSLEARVRDGVAIVARAASSMLRI---HGFLPEPKMDCREQEETRLTSGETLHRFLANVTWDG 352 (1258)
T ss_pred CccCccceeeeeccchhhhHHHHHhhhHHHHHHHHHHHHhh---cccCCCcccccccccCccccchhhhhhhhheeeecc
Confidence 36889999999999999999999999999999999999866 555456778899875333347999999999999997
Q ss_pred cCCCcceEECCCCCcccceeEEEEeeecCCCCceEEeccC
Q psy13446 82 DTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEESTL 121 (121)
Q Consensus 82 ~~G~~~V~Fd~~Gd~~~a~YdIvN~q~~~~g~~~w~~VG~ 121 (121)
+ |++|+.+|.+..+..-+|.+. +.-.|++||.
T Consensus 353 ---~-~lsf~~~g~~v~p~lvvI~l~----~~r~We~VG~ 384 (1258)
T KOG1053|consen 353 ---R-DLSFNEDGYLVHPNLVVIDLN----RDRTWERVGS 384 (1258)
T ss_pred ---c-ceeecCCceeeccceEEEecC----CCcchheece
Confidence 4 499999999989988877553 3668888884
No 26
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=98.88 E-value=4.9e-09 Score=86.02 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=57.0
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
....+||||++|+||++++++. + . . .+|.+|.++|++++|+|.+|.+ |.||++||+ .+.|
T Consensus 317 aa~~yDAv~~~a~Al~~~~~~~------------~---~-~--~~g~~i~~~l~~~~f~GvtG~~-v~fd~~G~~-~~~y 376 (404)
T cd06370 317 AAYLYDAVMLYAKALDETLLEG------------G---D-I--YNGTAIVSHILNRTYRSITGFD-MYIDENGDA-EGNY 376 (404)
T ss_pred eehhHHHHHHHHHHHHHHHHhc------------C---C-C--CCHHHHHHHHhCcccccccCce-EEEcCCCCc-ccce
Confidence 4578999999999999886431 0 0 1 5678999999999999999954 999999999 7999
Q ss_pred EEEEeeec
Q psy13446 102 KIMNLRPN 109 (121)
Q Consensus 102 dIvN~q~~ 109 (121)
.|+++|.+
T Consensus 377 ~v~~~~~~ 384 (404)
T cd06370 377 SVLALQPI 384 (404)
T ss_pred EEEEeccc
Confidence 99999864
No 27
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=98.78 E-value=3e-08 Score=81.21 Aligned_cols=78 Identities=21% Similarity=0.355 Sum_probs=62.9
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccc
Q psy13446 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAA 99 (121)
Q Consensus 20 ~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a 99 (121)
.+....+|||+++|+||+..++. + ..|.+|..|.++|++++|+|.+|+ |.||++||+ ..
T Consensus 297 ~~aa~~yDav~l~A~Al~~~~~~----g--------------~~~~~g~~l~~~l~~~~f~G~tG~--v~~d~~g~r-~~ 355 (387)
T cd06386 297 MFVEGFHDAILLYALALHEVLKN----G--------------YSKKDGTKITQRMWNRTFEGIAGQ--VSIDANGDR-YG 355 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC----C--------------CCCCCHHHHHHHHhCCceeecccc--EEECCCCCc-cc
Confidence 44679999999999999877521 1 115789999999999999999996 999999999 66
Q ss_pred eeEEEEeeecCCCCceEEecc
Q psy13446 100 ELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 100 ~YdIvN~q~~~~g~~~w~~VG 120 (121)
.|.|+.|+.. +...|+.||
T Consensus 356 ~~~v~~~~~~--~~~~~~~~~ 374 (387)
T cd06386 356 DFSVIAMTDV--EAGTYEVVG 374 (387)
T ss_pred cEEEEEccCC--CCccEEEEe
Confidence 9999999732 355666665
No 28
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=98.67 E-value=9.3e-08 Score=77.76 Aligned_cols=77 Identities=18% Similarity=0.359 Sum_probs=59.7
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
.....|||||++|+||+.+..+ .. .|.+|+.|.++|++++|+|.+|+ |.||++||+ ...
T Consensus 308 ~a~~~YDav~~~a~Al~~~~~~--------------~~----~~~~~~~i~~~l~~~~f~G~tG~--v~fd~~G~~-~~~ 366 (396)
T cd06373 308 FAGAFYDAVLLYALALNETLAE--------------GG----DPRDGTNITRRMWNRTFEGITGN--VSIDENGDR-ESD 366 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--------------cC----CCCChHHHHHHhcCCceecccCc--eEeecCCcc-cce
Confidence 3457899999999999987532 11 14678999999999999999997 999999999 788
Q ss_pred eEEEEeeecCCCCceEEecc
Q psy13446 101 LKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 101 YdIvN~q~~~~g~~~w~~VG 120 (121)
|.|+.|++..+| .++.||
T Consensus 367 ~~v~~~~~~~~g--~~~~~~ 384 (396)
T cd06373 367 FSLWDMTDTETG--TFEVVA 384 (396)
T ss_pred eeeeeccCCCCc--eEEEEe
Confidence 988877654433 344443
No 29
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=98.66 E-value=8.6e-08 Score=77.23 Aligned_cols=69 Identities=19% Similarity=0.355 Sum_probs=58.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccc
Q psy13446 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAA 99 (121)
Q Consensus 20 ~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a 99 (121)
......|||||++|+||+.+..+ .. . |.+++.+.++|++++|.|.+|. |.||++|++ .+
T Consensus 301 ~~a~~~YDav~~~a~Al~~~~~~--------------~~---~-~~~~~~v~~~l~~~~f~g~~G~--v~fd~~G~~-~~ 359 (389)
T cd06352 301 PYAGYLYDAVLLYAHALNETLAE--------------GG---D-YNGGLIITRRMWNRTFSGITGP--VTIDENGDR-EG 359 (389)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHh--------------CC---C-CCchHHHHHHhcCcEEEeeeee--EEEcCCCCe-ee
Confidence 35678999999999999987633 11 1 5778899999999999999996 999999999 68
Q ss_pred eeEEEEeeec
Q psy13446 100 ELKIMNLRPN 109 (121)
Q Consensus 100 ~YdIvN~q~~ 109 (121)
.|+|++||..
T Consensus 360 ~~~v~~~~~~ 369 (389)
T cd06352 360 DYSLLDLDST 369 (389)
T ss_pred eEEEEEecCC
Confidence 9999999975
No 30
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=98.60 E-value=1.9e-07 Score=76.24 Aligned_cols=77 Identities=14% Similarity=0.291 Sum_probs=58.3
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
.....||||+++|.||+..++. . ..|.+|..|.++|++++|+|.+|+ |.||++|++ .+.
T Consensus 310 ~aa~~YDav~l~a~Al~~~~~~----~--------------~~~~~g~~i~~~l~~~~f~G~tG~--v~fd~~G~r-~~~ 368 (405)
T cd06385 310 IAGGFYDGVMLYAHALNETMAK----G--------------GTRPPGTAITQRMWNRTFYGVTGF--VKIDDNGDR-ETD 368 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----C--------------CCCCCHHHHHHHhhCceEeeceeE--EEEcCCCCE-ece
Confidence 4456799999999999866521 0 114578999999999999999996 999999999 688
Q ss_pred eEEEEeeecCCCCceEEecc
Q psy13446 101 LKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 101 YdIvN~q~~~~g~~~w~~VG 120 (121)
|.|+.++...+| .|+.||
T Consensus 369 ~~~~~~~~~~~g--~~~~v~ 386 (405)
T cd06385 369 FALWDMTDTESG--DFQVVS 386 (405)
T ss_pred eEEEEccCCCCC--cEEEEE
Confidence 888766543333 344443
No 31
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=98.58 E-value=2.4e-07 Score=75.87 Aligned_cols=65 Identities=14% Similarity=0.244 Sum_probs=53.6
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
....||||+++|.||+..+++ + ..|.+|..+.++|++++|+|.+|+ |.||++|++ ...|
T Consensus 312 aa~~YDav~l~a~Al~~~~~~----~--------------~~~~~g~~i~~~l~~~~f~GvtG~--v~fd~~G~r-~~~~ 370 (399)
T cd06384 312 AGCFYDGVMLYAMALNETLAE----G--------------GSQKDGLNITRKMQDRRFWGVTGL--VSIDKNNDR-DIDF 370 (399)
T ss_pred hhhhHHHHHHHHHHHHHHHhc----C--------------CCCCCcHhHHHHHhCceeecceeE--EEECCCCCc-ccce
Confidence 567999999999999876522 0 126788899999999999999996 999999999 7778
Q ss_pred EEEEee
Q psy13446 102 KIMNLR 107 (121)
Q Consensus 102 dIvN~q 107 (121)
.+.-++
T Consensus 371 ~~~~~~ 376 (399)
T cd06384 371 DLWAMT 376 (399)
T ss_pred EEEEee
Confidence 775553
No 32
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=98.44 E-value=1.9e-07 Score=77.00 Aligned_cols=86 Identities=13% Similarity=0.054 Sum_probs=61.1
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCC-CCcc-CchhHHHHHHhcceeeccCCCcceEECCCCCcccc
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVG-ESRW-KTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAA 99 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~-~~~w-~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a 99 (121)
.+-.+|||+++|.|+.+|...+...+...+....|.+.. ...| ..|..+.+|||.++|+|-||+ |.||++|-| .
T Consensus 276 ~aL~~Dav~~~~~a~~~l~~~~~~~~~~~~~~~~~~g~~~~~~w~~~g~~~~~~~k~~~~~gltG~--i~f~~~g~R--~ 351 (368)
T cd06383 276 LFLAYDAVLAVGEWPRRMRKKRVEDGSTGTSVLPGFGISPESPLMTLQSSPFNGSSEIKFEMLAGR--VAIDEGSSV--S 351 (368)
T ss_pred HHHHHHHHHHhccccchhheeeccCCCcCccccCCCCCCcccchhhcccccccCccceeEeeecCe--EEEecCcee--e
Confidence 556799999999999987422222221111223466542 1246 566799999999999999997 999999977 7
Q ss_pred eeEEEEeeecCC
Q psy13446 100 ELKIMNLRPNLG 111 (121)
Q Consensus 100 ~YdIvN~q~~~~ 111 (121)
.|+|--|+-+-+
T Consensus 352 ~~~l~~~~~~~~ 363 (368)
T cd06383 352 TKTIGSWSASLG 363 (368)
T ss_pred eeeeeeEecCCC
Confidence 888888876443
No 33
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=98.27 E-value=2.1e-06 Score=70.40 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=53.6
Q ss_pred HhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccceeE
Q psy13446 23 QGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELK 102 (121)
Q Consensus 23 ~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Yd 102 (121)
...||||+++|+||+..++. + + . .+|.+|.+.|++.+|+|.+|+ |.||++||+ .+.|.
T Consensus 297 ~~~YDav~~~a~Al~~a~~~----g------------~-~--~d~~~l~~~l~~~~f~GvtG~--v~fd~~g~~-~~~~~ 354 (382)
T cd06371 297 GTIYNSIYLLAHAVENARAA----G------------G-G--VSGANLAQHTRNLEFQGFNQR--LRTDSGGGG-QAPYV 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHh----C------------C-C--ccHHHHHHHHhCccccccceE--EEecCCCCc-ccceE
Confidence 35799999999999977521 1 0 1 467899999999999999997 999999999 79999
Q ss_pred EEEeee
Q psy13446 103 IMNLRP 108 (121)
Q Consensus 103 IvN~q~ 108 (121)
|.+++-
T Consensus 355 v~~~~~ 360 (382)
T cd06371 355 VLDTDG 360 (382)
T ss_pred EEecCC
Confidence 988774
No 34
>KOG1054|consensus
Probab=98.03 E-value=1.8e-05 Score=70.48 Aligned_cols=93 Identities=24% Similarity=0.298 Sum_probs=72.6
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
++--+|||.|.|+|+..++++.-.+..+..++ +|-......|..|..+-+.||+|.++|-||. |+||..|.|++=..
T Consensus 300 sAlthDailV~~eaf~~~~~q~~~~~rRG~~G-D~~an~~~p~~qG~~I~ralk~v~~eGLTGn--iqFd~~G~R~Nyt~ 376 (897)
T KOG1054|consen 300 SALTHDAILVMAEAFRSLRRQRIDISRRGNAG-DCLANPAVPWEQGIDIERALKQVQVEGLTGN--IQFDKYGRRTNYTI 376 (897)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhchhccCCCc-cccCCCCCchhcchhHHHHHHheeecccccc--eeecccCccccceE
Confidence 44568999999999999887764444333444 6877544679999999999999999999996 99999999988788
Q ss_pred EEEEeeecCC-CCceEE
Q psy13446 102 KIMNLRPNLG-SQLKWE 117 (121)
Q Consensus 102 dIvN~q~~~~-g~~~w~ 117 (121)
+|+.+.++.. ..+.|.
T Consensus 377 ~i~elk~~~~rk~~~W~ 393 (897)
T KOG1054|consen 377 DIVELKSNGSRKVGYWN 393 (897)
T ss_pred EEEEeccCCcceeeeec
Confidence 8998876543 245554
No 35
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=97.88 E-value=7e-05 Score=63.29 Aligned_cols=66 Identities=14% Similarity=0.263 Sum_probs=53.9
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccc
Q psy13446 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAA 99 (121)
Q Consensus 20 ~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a 99 (121)
-+....+|||..+||||++.+...+ . ..+..+-+.|+|.+|+|.+|. |.+|+|||+ ..
T Consensus 285 ~~aa~fyDaVLLYa~AL~EtL~~G~-----------------~--~~~~~I~~~m~NrTF~GitG~--V~IDeNGDR-d~ 342 (380)
T cd06369 285 DYVAAYHDGVLLFGHVLKKFLESQE-----------------G--VQTFSFINEFRNISFEGAGGP--YTLDEYGDR-DV 342 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-----------------C--CCcHHHHHHHhCcceecCCCc--eEeCCCCCc-cC
Confidence 5678899999999999988873311 1 122577788999999999997 999999999 99
Q ss_pred eeEEEEee
Q psy13446 100 ELKIMNLR 107 (121)
Q Consensus 100 ~YdIvN~q 107 (121)
.|.++-..
T Consensus 343 dfsLl~ms 350 (380)
T cd06369 343 NFTLLYTS 350 (380)
T ss_pred ceEEEEee
Confidence 99888774
No 36
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=97.64 E-value=0.00017 Score=56.38 Aligned_cols=61 Identities=28% Similarity=0.372 Sum_probs=51.6
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
....-|+|++++++||+.. + +.++..|.++|+++.|+|.+|. |.||++|++....
T Consensus 274 ~~~~~yda~~~~~~al~~~--------------------~---~~~~~~v~~~l~~~~~~g~~g~--i~f~~~g~~~~~~ 328 (334)
T cd06342 274 YAPYAYDAANVLAEAIKKA--------------------G---STDPAKVADALRKVDFDGVTGK--ISFDAKGDLKGAA 328 (334)
T ss_pred hHHHHHHHHHHHHHHHHHh--------------------C---CCCHHHHHHHHHhCCCCCccee--eEECCCCCcccCc
Confidence 4557789999999998833 1 2567899999999999999994 9999999999999
Q ss_pred eEEEEe
Q psy13446 101 LKIMNL 106 (121)
Q Consensus 101 YdIvN~ 106 (121)
|+|..|
T Consensus 329 ~~~~~~ 334 (334)
T cd06342 329 VTVYQV 334 (334)
T ss_pred EEEEeC
Confidence 999776
No 37
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=97.63 E-value=0.00012 Score=60.28 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=35.8
Q ss_pred hHHHHHHhcceeeccCCCcceEECCCCCcccceeEEEEeeec
Q psy13446 68 DRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPN 109 (121)
Q Consensus 68 ~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~YdIvN~q~~ 109 (121)
+.|.+|||++.|+|-||+ |.||++|.+++-.+||+.+...
T Consensus 304 ~~~~~~~~~~~~~GLTG~--i~F~~~g~r~~~~l~i~~~~~~ 343 (363)
T cd06381 304 LLLLETIKKGPITGLTGK--LEFNEGGDNSNVQFEILGTGYS 343 (363)
T ss_pred HHHHHHHHhcCccCccee--EEeCCCCCccccEEEEEEeccC
Confidence 345689999999999997 9999999999999999999853
No 38
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=96.76 E-value=0.0028 Score=50.26 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=46.7
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
...-|+|+++++.|++....+.. ..+|.. -..+..|-++|++++|.|.+|+ |.||++|++....|
T Consensus 277 ~~~~yda~~~~~~A~~~a~~~~~--------~~~~~~-----~~~~~~l~~~l~~~~~~g~~G~--v~f~~~g~~~~~~~ 341 (344)
T cd06348 277 SAQAFDAVQVVAEALKRLNQKQK--------LAELPL-----PELRTALNAALLSGQYDTPLGE--ISFTPDGEVLQKAF 341 (344)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc--------cccchh-----hhHHHHHHHHHhccCCccceee--eEECCCCCcccCce
Confidence 34569999999999986653211 111211 0335688899999999999995 99999999975554
No 39
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=96.67 E-value=0.0052 Score=50.18 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=49.4
Q ss_pred HhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccceeE
Q psy13446 23 QGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELK 102 (121)
Q Consensus 23 ~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Yd 102 (121)
..-|+++++++.||+. . +. .++..|-+.|++..|+|..|+ +.||.+|+++...|.
T Consensus 301 ~~~Y~~~~~l~~Al~~-------a-------------G~---~~~~~l~~al~~~~~~~~~G~--~~~~~~g~~~~~~~~ 355 (369)
T PRK15404 301 WTTYAAVQSLAAGINR-------A-------------GS---DDPAKVAKYLKANTFDTVIGP--LSWDEKGDLKGFEFG 355 (369)
T ss_pred HHHHHHHHHHHHHHHh-------h-------------CC---CCHHHHHHHHHhCCCCcceEe--eEECCCCCcccCCEE
Confidence 3567777777777761 1 11 456789999999999999996 999999999989999
Q ss_pred EEEeeec
Q psy13446 103 IMNLRPN 109 (121)
Q Consensus 103 IvN~q~~ 109 (121)
|+-|+.+
T Consensus 356 i~~~~~~ 362 (369)
T PRK15404 356 VFEWHAD 362 (369)
T ss_pred EEEEEcC
Confidence 9988863
No 40
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=96.24 E-value=0.0082 Score=47.66 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccc
Q psy13446 24 GISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAA 99 (121)
Q Consensus 24 ~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a 99 (121)
.=|+|++++++|++.- + +.++..+-+.|+++.|+|.+|. |.||++||+ .+
T Consensus 289 ~~yda~~~l~~A~~~a--------------------g---~~~~~~i~~al~~~~~~g~~G~--i~f~~~g~~-~~ 338 (344)
T cd06345 289 STYDSIYILAEAIERA--------------------G---STDGDALVEALEKTDFVGTAGR--IQFYGDDSA-FA 338 (344)
T ss_pred HHHHHHHHHHHHHHHh--------------------c---CCCHHHHHHHHHhCCCcCCcee--EEECCCCCc-Cc
Confidence 4578888888888721 1 2456789999999999999995 999999999 44
No 41
>KOG1055|consensus
Probab=96.15 E-value=0.0028 Score=57.98 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHH-HHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccceeE
Q psy13446 24 GISTAIKVYAYGV-EDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELK 102 (121)
Q Consensus 24 ~I~~AVyv~A~al-~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Yd 102 (121)
--||||-|+|+|+ +.|.+-. . .+.+=.+-......-..++|+.|++.+|+|.+|+ |.|.+ |++ .|-=+
T Consensus 344 ~ayd~Iwa~ala~n~t~e~l~--~-----~~~~l~~f~y~~k~i~d~i~eamn~tsF~GvsG~--V~F~~-geR-~a~t~ 412 (865)
T KOG1055|consen 344 LAYDAIWALALALNKTMEGLG--R-----SHVRLEDFNYNNKTIADQIYEAMNSTSFEGVSGH--VVFSN-GER-MALTL 412 (865)
T ss_pred hHHHHHHHHHHHHHHHHhcCC--c-----cceeccccchhhhHHHHHHHHHhhcccccccccc--eEecc-hhh-HHHHH
Confidence 4589999999999 4443210 1 1111111110112457899999999999999997 99999 999 55444
Q ss_pred EEEee
Q psy13446 103 IMNLR 107 (121)
Q Consensus 103 IvN~q 107 (121)
|--||
T Consensus 413 ieQ~q 417 (865)
T KOG1055|consen 413 IEQFQ 417 (865)
T ss_pred HHHHh
Confidence 54454
No 42
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=95.80 E-value=0.027 Score=43.51 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=50.8
Q ss_pred cccceeeeEEecCcchhHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccC
Q psy13446 4 EVREKKKGVHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDT 83 (121)
Q Consensus 4 ~~p~g~lgv~~d~s~~~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~ 83 (121)
..|.|++|+++....+.....+...- +.. .+. .+. +.- -.+...+|+.+.-. |
T Consensus 235 ~~~~~i~g~~~~~~~~~~~~~~~~~~-------~~~--~~~-~~~-------~~~-----~~~~~~~~d~~~~~-----t 287 (328)
T cd06351 235 YGPANITGFRLVDPDSPDVSQFLQRW-------LEE--SPG-VNL-------RAP-----IYDAALLYDAVLLL-----T 287 (328)
T ss_pred cCCcceEEEEEeCCCchHHHHHHHhh-------hhc--cCC-CCc-------Ccc-----chhhHhhhcEEEEE-----E
Confidence 46899999999998777444443322 111 111 110 100 02344445544333 7
Q ss_pred CCcceEECCCCCcccceeEEEEeeecCCCCceEEecc
Q psy13446 84 GKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 84 G~~~V~Fd~~Gd~~~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
|. |+||++|.+.+..++|++++. ...|++||
T Consensus 288 g~--i~f~~~g~r~~~~l~i~~l~~----~~~~~~vg 318 (328)
T cd06351 288 GT--VSFDEDGVRSNFTLDIIELNR----SRGWRKVG 318 (328)
T ss_pred ee--EEECCCCcccceEEEEEEecC----CCCceEEE
Confidence 76 999999999999999999974 33455554
No 43
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=95.79 E-value=0.0075 Score=47.54 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=23.8
Q ss_pred ccCCCcceEECCCCCcccceeEEEEee
Q psy13446 81 GDTGKPNVEFTADGVLKAAELKIMNLR 107 (121)
Q Consensus 81 g~~G~~~V~Fd~~Gd~~~a~YdIvN~q 107 (121)
|.||+ |+||++|+|.+..|+|||.+
T Consensus 286 g~tG~--v~f~~~g~r~~~~~~~~~~~ 310 (327)
T cd06382 286 GLTGR--IEFDSSGQRSNFTLDVIELT 310 (327)
T ss_pred ecccc--eeeCCCCCEeeeEEEEEecc
Confidence 99997 99999999999999999987
No 44
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=95.29 E-value=0.086 Score=43.03 Aligned_cols=74 Identities=12% Similarity=0.176 Sum_probs=57.7
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhccee-eccCCCcceEECCCCCcccc
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSV-EGDTGKPNVEFTADGVLKAA 99 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f-~g~~G~~~V~Fd~~Gd~~~a 99 (121)
....=|+|+++++.|++.... + .+...+-+.|+...+ .+.+|. |.||++||+...
T Consensus 290 ~~~~~y~a~~~~~~ai~~a~~-----~-----------------~d~~~v~~al~~~~~~~~~~G~--v~~~~~~~~~~~ 345 (366)
T COG0683 290 FAAAAYDAVKLLAKAIEKAGK-----S-----------------SDREAVAEALKGGKFFDTAGGP--VTFDEKGDRGSK 345 (366)
T ss_pred chHHHHHHHHHHHHHHHHHhc-----C-----------------CCHHHHHHHHhhCCCCccCCcc--eeECCCCCcCCC
Confidence 456678899999999984420 1 125678899999985 777886 999999999999
Q ss_pred eeEEEEeeecCCCCceEEe
Q psy13446 100 ELKIMNLRPNLGSQLKWEE 118 (121)
Q Consensus 100 ~YdIvN~q~~~~g~~~w~~ 118 (121)
.|.|+-|+...++...|..
T Consensus 346 ~~~i~~~~~~~~~~~~~~~ 364 (366)
T COG0683 346 PVYVGQVQKGGDGKFVYAK 364 (366)
T ss_pred ceEEEEEEecCCCeEEecC
Confidence 9999999976666666653
No 45
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=95.04 E-value=0.066 Score=42.20 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 24 GISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 24 ~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
.=|+|+.++++|++.. + . .++..|.+.|++++|+|.+|. |.||.+|++....|
T Consensus 289 ~~y~a~~~~~~a~~~a-------g-------------~---~~~~~v~~al~~~~~~~~~G~--~~f~~~~~~~~~~~ 341 (345)
T cd06338 289 GAYAAGQVLQEAVERA-------G-------------S---LDPAAVRDALASNDFDTFYGP--IKFDETGQNNHPMT 341 (345)
T ss_pred HHHHHHHHHHHHHHHh-------C-------------C---CCHHHHHHHHHhCCCcccccC--eeECCCCCcCCCce
Confidence 4577788888887621 1 1 356789999999999999995 99999999965544
No 46
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=94.86 E-value=0.084 Score=41.03 Aligned_cols=57 Identities=11% Similarity=0.032 Sum_probs=42.8
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
...-++|+++++.|++.. +. + ..++..|-+.|++.+|+|..|. |.||++|+.....|
T Consensus 273 ~~~~yda~~~~~~a~~~a-------g~-------~-------~~~~~~v~~al~~~~~~~~~g~--i~f~~~~~~~~~~~ 329 (333)
T cd06332 273 AAQGYDAAQLLDAALRAV-------GG-------D-------LSDKDALRAALRAADFDSPRGP--FKFNPNHNPIQDFY 329 (333)
T ss_pred HHHHHHHHHHHHHHHHHh-------cC-------C-------CCCHHHHHHHHhcCceecCccc--eeECCCCCccccee
Confidence 345688888888888732 10 0 1345678899999999999995 99999999866655
No 47
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=94.79 E-value=0.099 Score=40.87 Aligned_cols=59 Identities=7% Similarity=0.008 Sum_probs=45.1
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccc
Q psy13446 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAA 99 (121)
Q Consensus 20 ~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a 99 (121)
.....-++|+++++.|++.-- + . . .++..|.+.|+++.|.|..|+ |.||++|++..+
T Consensus 274 ~~~~~~yda~~~~~~A~~~a~------~------------~-~--~~~~~v~~al~~~~~~~~~g~--~~f~~~~~~~~~ 330 (336)
T cd06360 274 VYAVQGYDAGQALILALEAVG------G------------D-L--SDGQALIAAMAAAKIDSPRGP--FTLDKAHNPIQD 330 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhC------C------------C-C--CCHHHHHHHHhcCCccCCCcc--eEECCCCCcccc
Confidence 345678899999999998321 0 0 0 245689999999999999986 999999998666
Q ss_pred ee
Q psy13446 100 EL 101 (121)
Q Consensus 100 ~Y 101 (121)
.|
T Consensus 331 ~~ 332 (336)
T cd06360 331 NY 332 (336)
T ss_pred eE
Confidence 55
No 48
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=94.24 E-value=0.052 Score=43.06 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=31.3
Q ss_pred cceeeccCCCcceEECCCCCcccceeEEEEeeecCCCCceEEecc
Q psy13446 76 NVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 76 nv~f~g~~G~~~V~Fd~~Gd~~~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
+++|.|.+|+ |.||++|++....|+++++. .-.|+.||
T Consensus 301 ~~~~~G~~G~--v~fd~~~~~~~~~~~~~~~~-----~~~~~~vg 338 (350)
T cd06366 301 STNFNGLSGP--VQFDGGRRLASPAFEIINII-----GKGYRKIG 338 (350)
T ss_pred eceEEeeeee--EEEcCCCccCCcceEEEEec-----CCceEEEE
Confidence 7899999996 99999999988899888884 33566665
No 49
>KOG1052|consensus
Probab=93.92 E-value=0.28 Score=43.09 Aligned_cols=80 Identities=21% Similarity=0.291 Sum_probs=60.6
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccC-CCcceEECCCCCcccce
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDT-GKPNVEFTADGVLKAAE 100 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~-G~~~V~Fd~~Gd~~~a~ 100 (121)
....+||++++|.|++.+.+ .+ ....+|... ..|..+..+++++++....+.. +.-++.|+.+|.+..-.
T Consensus 101 ~~~~~D~~~~~a~~~~~~~~----~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (656)
T KOG1052|consen 101 ALWAYDAIQALARAVESLLN----IG---NLSLSCGRN--NSWLDALGVFNFGKKLLVVNLSGVTGQFQFFRGGLLEYFK 171 (656)
T ss_pred hhHHHHHHHHHHHHHHHhhc----CC---CCceecCCC--CcccchhHHHHHHHhhhhhccccceeEEEecCCCccccce
Confidence 56789999999999998874 12 345558874 4599999999999998876553 22227888878898889
Q ss_pred eEEEEeeecC
Q psy13446 101 LKIMNLRPNL 110 (121)
Q Consensus 101 YdIvN~q~~~ 110 (121)
|+|+|.....
T Consensus 172 ~~i~n~~~~~ 181 (656)
T KOG1052|consen 172 YEILNLNGSG 181 (656)
T ss_pred EEEEEecCcC
Confidence 9999976543
No 50
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=92.83 E-value=0.24 Score=38.48 Aligned_cols=53 Identities=17% Similarity=0.178 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcc-eeeccCCCcceEECCCCCccccee
Q psy13446 24 GISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNV-SVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 24 ~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv-~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
.=++|+.+++.|++. |.. .++..+.+.|++. .|+|.+|. |.||.+|+.....|
T Consensus 278 ~~yda~~~~~~Al~~-----------------ag~------~~~~~v~~~l~~~~~~~g~~G~--v~f~~~g~~~~~~~ 331 (334)
T cd06347 278 LGYDAYYLLADAIER-----------------AGS------TDPEAIRDALAKTKDFDGVTGK--ITIDENGNPVKSAV 331 (334)
T ss_pred HHHHHHHHHHHHHHH-----------------hCC------CCHHHHHHHHHhCCCcccceee--eEECCCCCcCCCce
Confidence 447888888888762 211 2567888888765 79999996 99999999866655
No 51
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=92.42 E-value=0.16 Score=39.91 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=27.5
Q ss_pred eEECCCCCcccceeEEEEeeecCCCCceEEeccC
Q psy13446 88 VEFTADGVLKAAELKIMNLRPNLGSQLKWEESTL 121 (121)
Q Consensus 88 V~Fd~~Gd~~~a~YdIvN~q~~~~g~~~w~~VG~ 121 (121)
|.||++||+ .+.|+|++||... +...+++||.
T Consensus 305 v~f~~~gd~-~~~~~i~~~~~~~-~~~~~~~vg~ 336 (348)
T cd06350 305 VKFDENGDR-LASYDIINWQIFP-GGGGFVKVGF 336 (348)
T ss_pred EEecCCCCc-ccceeEEEEEEcC-CcEEEEEEEE
Confidence 999999999 8889999999755 6778888873
No 52
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=91.91 E-value=0.45 Score=37.59 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=42.7
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
...=|+|+++++.|++.. +. + . .++..|-+.|++.+|.|.+|. |.|+.+|+...+.|
T Consensus 273 ~~~~yda~~~~~~A~~~a-------g~-------~-----~--~~~~~v~~al~~~~~~~~~G~--~~~~~~~~~~~~~~ 329 (333)
T cd06359 273 AAQAYDAAQLLDSAVRKV-------GG-------N-----L--SDKDALRAALRAADFKSVRGA--FRFGTNHFPIQDFY 329 (333)
T ss_pred HHHHHHHHHHHHHHHHHh-------cC-------C-----C--CCHHHHHHHHhcCccccCccc--eEECCCCCcceeEE
Confidence 345688888999998732 10 0 0 356789999999999999995 99999999855555
No 53
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=91.70 E-value=0.26 Score=38.95 Aligned_cols=54 Identities=26% Similarity=0.293 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHH-HHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFY-RYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~-~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
...=|+|+++++.|++.- +. .++..+- ..++...|+|..|. |.||++||+..+-
T Consensus 274 a~~~Yda~~~l~~A~~~a-------g~----------------~~~~~~~~~~~~~~~~~g~~g~--i~f~~~g~~~~~~ 328 (332)
T cd06344 274 TATAYDATKALIAALSQG-------PT----------------REGVQQVELSLRNFSVQGATGK--IKFLPSGDRNGQA 328 (332)
T ss_pred HHhHHHHHHHHHHHHHhC-------CC----------------hhhhhhhhhhcccccccCCCce--eEeCCCCcccCcC
Confidence 456788999999999721 10 1112233 56777889998885 9999999996543
No 54
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=91.53 E-value=0.18 Score=39.40 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=21.7
Q ss_pred CCCcceEECCCCCcccceeEEEEee
Q psy13446 83 TGKPNVEFTADGVLKAAELKIMNLR 107 (121)
Q Consensus 83 ~G~~~V~Fd~~Gd~~~a~YdIvN~q 107 (121)
+|+ ++||++|+|++..++|+|+.
T Consensus 285 tg~--~~f~~~g~~~~~~~~i~~~~ 307 (324)
T cd06368 285 TGR--IQFDENGQRSNFTLDILELK 307 (324)
T ss_pred eee--eEeCCCCcCcceEEEEEEEc
Confidence 776 99999999999999999998
No 55
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=91.32 E-value=1.1 Score=36.89 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=43.1
Q ss_pred HhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhc-ceeeccCCCcceEECCCCCccccee
Q psy13446 23 QGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRN-VSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 23 ~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrn-v~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
..-|+|++++++|++.. + + .++..|-+.|++ .+|.+..|+ |.||+++.-....+
T Consensus 277 ~~~Yda~~~l~~Ai~~A--------------------G-s--~d~~av~~aL~~~~~~~~~~G~--i~fd~~~~~~~~~~ 331 (374)
T TIGR03669 277 ENNYFSVYMYKQAVEEA--------------------G-T--TDQDAVRDVLESGVEMDAPEGK--VCIDGATHHMSHTM 331 (374)
T ss_pred HHHHHHHHHHHHHHHHh--------------------C-C--CCHHHHHHHHHcCCeEECCCcc--EEEcCCCCeeeeee
Confidence 34688999999998721 1 1 467789999997 678888995 99998765433344
Q ss_pred EEEEeee
Q psy13446 102 KIMNLRP 108 (121)
Q Consensus 102 dIvN~q~ 108 (121)
-|.-|++
T Consensus 332 ~v~~~~~ 338 (374)
T TIGR03669 332 RLARADA 338 (374)
T ss_pred EEEEEcC
Confidence 4555654
No 56
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=90.67 E-value=0.78 Score=36.16 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=37.9
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCc
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVL 96 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~ 96 (121)
...-|+|+.+++.|++. |.+ .++..|.+.|++++|+|.+|. +.|++++.+
T Consensus 276 ~~~~yda~~~~~~A~~~-----------------ag~------~~~~~l~~al~~~~~~~~~G~--i~f~~~~~~ 325 (333)
T cd06331 276 AEAAYEAVYLWAAAVEK-----------------AGS------TDPEAVRAALEGVSFDAPQGP--VRIDPDNHH 325 (333)
T ss_pred hHHHHHHHHHHHHHHHH-----------------cCC------CCHHHHHHHhhcCcccCCCCc--eEecCCCCc
Confidence 44566777777777761 311 467799999999999999996 999997776
No 57
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=89.67 E-value=1.8 Score=34.70 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCC-CCc
Q psy13446 24 GISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTAD-GVL 96 (121)
Q Consensus 24 ~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~-Gd~ 96 (121)
.-|+|+++++.||+.. + + .++..|-+.|++.+|++..|. +.|+++ +..
T Consensus 279 ~~Y~a~~~~~~Al~~a-------g--------------~--~~~~~i~~aL~~~~~~~~~g~--~~f~~~~~~~ 327 (348)
T cd06355 279 AAYIGVYLWKQAVEKA-------G--------------S--FDVDKVRAALPGQSFDAPEGP--VTVDPANHHL 327 (348)
T ss_pred HHHHHHHHHHHHHHHh-------C--------------C--CCHHHHHHHhccCcccCCCcc--eEeecCCCee
Confidence 4577888888888711 1 1 356789999999999988885 999984 444
No 58
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=88.63 E-value=1.3 Score=34.89 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=28.1
Q ss_pred CchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 65 KTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 65 ~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
.++..|.+.|++++|+|..|. |.|++++.. .+.|
T Consensus 296 ~~~~~v~~al~~~~~~~~~G~--~~~~~~~~~-~~~~ 329 (333)
T cd06358 296 LDPEALIAALEDVSYDGPRGT--VTMRGRHAR-QPVY 329 (333)
T ss_pred CCHHHHHHHhccCeeeCCCcc--eEEcccccc-ccce
Confidence 466789999999999999996 999998776 4455
No 59
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=87.34 E-value=4 Score=32.89 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=36.6
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCC
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGV 95 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd 95 (121)
...-|+|++++++||+.. + . .++..|-+.|++++|.+..|. +.||.+++
T Consensus 278 ~~~~yda~~~l~~Al~~a-------g-------------~---~~~~~v~~aL~~~~~~~~~g~--~~f~~~~~ 326 (360)
T cd06357 278 AEAAYFQVHLFARALQRA-------G-------------S---DDPEDVLAALLGFSFDAPQGP--VRIDPDNN 326 (360)
T ss_pred HHHHHHHHHHHHHHHHHc-------C-------------C---CCHHHHHHHhccCcccCCCcc--eEEeCCCC
Confidence 345588888888888721 1 0 235578999999999998885 99998665
No 60
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=85.94 E-value=3.3 Score=33.32 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=28.6
Q ss_pred CchhHHHHHHhcceeeccCCCcceEECC-CCCcccceeEEEEee
Q psy13446 65 KTGDRFYRYLRNVSVEGDTGKPNVEFTA-DGVLKAAELKIMNLR 107 (121)
Q Consensus 65 ~~g~~l~~yLrnv~f~g~~G~~~V~Fd~-~Gd~~~a~YdIvN~q 107 (121)
.++..|-+.|++.+|++..|. |+|++ +++. ...+.|.-|+
T Consensus 298 ~~~~~i~~al~~~~~~~~~G~--i~f~~~~~~~-~~~~~~~~~~ 338 (359)
T TIGR03407 298 FDVDAVRDAAIGIEFDAPEGK--VKVDGKNHHL-TKTVRIGEIR 338 (359)
T ss_pred CCHHHHHHHhcCCcccCCCcc--EEEeCCCCee-eeeeEEEEEc
Confidence 356789999999999999994 99998 5555 3333344444
No 61
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=84.86 E-value=3.1 Score=32.37 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=44.9
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
....=++|+.+++.||+.. + . .++..+.+.|++++|+|..|. +.|++.+......
T Consensus 278 ~~~~~yda~~~~~~al~~~--------------------g-~--~~~~~v~~al~~~~~~g~~g~--~~~~~~~~~~~~~ 332 (343)
T PF13458_consen 278 YAAQGYDAARLLAQALERA--------------------G-S--LDREAVREALESLKYDGLFGP--ISFDPPDHQANKP 332 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------------T-S--HHHHHHHHHHHTSEEEETTEE--EEEETTTSBEEEE
T ss_pred hHHHHHHHHHHHHHHHHHh--------------------C-C--CCHHHHHHHHHhCCCcccccc--eEEeCCCCccccC
Confidence 3456677888888888632 1 1 678899999999999998886 8886544443556
Q ss_pred eEEEEee
Q psy13446 101 LKIMNLR 107 (121)
Q Consensus 101 YdIvN~q 107 (121)
+-|+-++
T Consensus 333 ~~i~~v~ 339 (343)
T PF13458_consen 333 VYIVQVK 339 (343)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 6677776
No 62
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=84.19 E-value=2.1 Score=35.13 Aligned_cols=26 Identities=35% Similarity=0.541 Sum_probs=24.1
Q ss_pred ccCCCcceEECCCCCcccceeEEEEeee
Q psy13446 81 GDTGKPNVEFTADGVLKAAELKIMNLRP 108 (121)
Q Consensus 81 g~~G~~~V~Fd~~Gd~~~a~YdIvN~q~ 108 (121)
|-||+ |.||++|-|++=.+|||.+++
T Consensus 291 glTg~--i~f~~~g~R~~~~l~v~~l~~ 316 (333)
T cd06394 291 GLTGR--IEFNSKGQRSNYTLKILQKTR 316 (333)
T ss_pred eeecc--eecCCCCcCcccEEEEEEecC
Confidence 99997 999999999999999999984
No 63
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=81.67 E-value=5.1 Score=31.75 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=39.2
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECC-CCCcccce
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTA-DGVLKAAE 100 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~-~Gd~~~a~ 100 (121)
...-|+|+++++.|++.. + . .++..|-+.|++..|.+..|. ++|++ ++++..+.
T Consensus 276 ~~~~y~a~~~l~~Ai~~a----------------g----~---~~~~~v~~aL~~~~~~~~~g~--~~f~~~~~~~~~~~ 330 (333)
T cd06328 276 TAGGMSAAIAVVEALEET----------------G----D---TDTEALIAAMEGMSFETPKGT--MTFRKEDHQALQPM 330 (333)
T ss_pred hHHHHHHHHHHHHHHHHh----------------C----C---CCHHHHHHHHhCCeeecCCCc--eEECcccchhhhcc
Confidence 445677777777777621 0 1 456689999999999999995 99995 56665555
Q ss_pred e
Q psy13446 101 L 101 (121)
Q Consensus 101 Y 101 (121)
|
T Consensus 331 ~ 331 (333)
T cd06328 331 Y 331 (333)
T ss_pred c
Confidence 5
No 64
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=81.50 E-value=3.7 Score=32.73 Aligned_cols=55 Identities=25% Similarity=0.170 Sum_probs=37.5
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHH--HHHhcceee---ccCCCcceEECCCCC
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFY--RYLRNVSVE---GDTGKPNVEFTADGV 95 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~--~yLrnv~f~---g~~G~~~V~Fd~~Gd 95 (121)
....=|+|+.++++|++..- + .++..+- ..|++..+. +..|. ++||++||
T Consensus 284 ~~~~~Y~a~~~l~~A~~~ag---------------------~--~~~~~v~~~~~~~~~~~~~~~~~~g~--~~f~~~g~ 338 (347)
T cd06340 284 NSARAYTAVLVIADALERAG---------------------S--ADPEKIRDLAALASTSGEDLIMPYGP--IKFDAKGQ 338 (347)
T ss_pred HHHHHHHHHHHHHHHHHHhc---------------------C--CCHHHHHHHHHhccCCccccccCCCC--eeECCCCC
Confidence 34567899999999998321 0 2344555 367777764 34664 99999999
Q ss_pred cccce
Q psy13446 96 LKAAE 100 (121)
Q Consensus 96 ~~~a~ 100 (121)
..++.
T Consensus 339 ~~~~~ 343 (347)
T cd06340 339 NTNAR 343 (347)
T ss_pred ccccc
Confidence 97764
No 65
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=81.26 E-value=3.9 Score=32.42 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=34.9
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECC
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTA 92 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~ 92 (121)
...-|+|+.+++.|++. | +. .++..|-+.|++++|++..|. +.|+.
T Consensus 285 ~~~~y~~~~~~~~a~~~-----------------a---g~---~~~~~v~~al~~~~~~~~~g~--~~~~~ 330 (342)
T cd06329 285 EGQAYNGIQMLADAIEK-----------------A---GS---TDPEAVAKALEGMEVDTPVGP--VTMRA 330 (342)
T ss_pred HHHHHHHHHHHHHHHHH-----------------h---CC---CCHHHHHHHHhCCccccCCCC--eEEcc
Confidence 34557788888888872 1 11 456789999999999999995 99985
No 66
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=79.67 E-value=5.6 Score=31.29 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.9
Q ss_pred hHHHHHHhcceeeccCCCcceEECC
Q psy13446 68 DRFYRYLRNVSVEGDTGKPNVEFTA 92 (121)
Q Consensus 68 ~~l~~yLrnv~f~g~~G~~~V~Fd~ 92 (121)
+.|.+.|++++++|..|. |.|++
T Consensus 310 ~~v~~al~~~~~~~~~G~--~~f~~ 332 (346)
T cd06330 310 EQIAAALEGLSFETPGGP--ITMRA 332 (346)
T ss_pred HHHHHHHcCCCccCCCCc--eeeec
Confidence 579999999999999995 99988
No 67
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=79.44 E-value=2.3 Score=33.34 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=17.4
Q ss_pred eeccCCCcceEECCCCCcccceeE
Q psy13446 79 VEGDTGKPNVEFTADGVLKAAELK 102 (121)
Q Consensus 79 f~g~~G~~~V~Fd~~Gd~~~a~Yd 102 (121)
|.|.+|+ |.||.+|++.. -|+
T Consensus 289 ~~g~~g~--~~f~~~g~~~~-~~~ 309 (312)
T cd06346 289 YQGASGV--VDFDENGDVAG-SYD 309 (312)
T ss_pred hCCCccc--eeeCCCCCccc-cee
Confidence 9999997 99999999833 553
No 68
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=78.88 E-value=6 Score=32.43 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=43.5
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceee--ccCCCcceEECC-CCCccc
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVE--GDTGKPNVEFTA-DGVLKA 98 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~--g~~G~~~V~Fd~-~Gd~~~ 98 (121)
....|+||+++|.|++.- + + .+|..+-++|++..+. +..|++ ++|.+ |+-...
T Consensus 253 ~a~aY~av~~~a~Ai~~A--------------------G-s--~d~~aV~~aL~~~~~~~~~~~g~~-~~~R~~Dhq~~~ 308 (347)
T TIGR03863 253 DYAAWLAVRAVGEAVTRT--------------------R-S--ADPATLRDYLLSDEFELAGFKGRP-LSFRPWDGQLRQ 308 (347)
T ss_pred HHHHHHHHHHHHHHHHHh--------------------c-C--CCHHHHHHHHcCCCceecccCCCc-ceeeCCCccccc
Confidence 346889999999999822 1 1 6788999999998884 567765 99985 888877
Q ss_pred cee
Q psy13446 99 AEL 101 (121)
Q Consensus 99 a~Y 101 (121)
+.|
T Consensus 309 ~~~ 311 (347)
T TIGR03863 309 PVL 311 (347)
T ss_pred ceE
Confidence 777
No 69
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=77.13 E-value=5.4 Score=31.35 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=38.6
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhccee-eccCCCcceEECC-CCCcccc
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSV-EGDTGKPNVEFTA-DGVLKAA 99 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f-~g~~G~~~V~Fd~-~Gd~~~a 99 (121)
...-|+|+.+++.|++.. + . .++..+-+.|+++.. ++..|. +.|++ +++...+
T Consensus 276 ~~~~Y~~~~~~~~A~~~a-------g-------------~---~~~~~v~~al~~~~~~~~~~g~--~~~~~~~~~~~~~ 330 (334)
T cd06327 276 QAGAYSAVLHYLKAVEAA-------G-------------T---DDADKVVAKMKETPIYDLFAGN--GYIRACDHQMVHD 330 (334)
T ss_pred HHHHHHHHHHHHHHHHHH-------C-------------C---CChHHHHHhccccceeccCCCC--ceeeccccchhcc
Confidence 346778888888888722 1 1 345568899999866 666674 99987 7877555
Q ss_pred ee
Q psy13446 100 EL 101 (121)
Q Consensus 100 ~Y 101 (121)
.|
T Consensus 331 ~~ 332 (334)
T cd06327 331 MY 332 (334)
T ss_pred cc
Confidence 55
No 70
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=72.36 E-value=6 Score=31.51 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=16.9
Q ss_pred ceeeccCCCcceEECCCCCcccc
Q psy13446 77 VSVEGDTGKPNVEFTADGVLKAA 99 (121)
Q Consensus 77 v~f~g~~G~~~V~Fd~~Gd~~~a 99 (121)
..|++..|. |.||++||..-|
T Consensus 322 ~~~~~~~g~--~~~~~~~~~~~~ 342 (347)
T cd06336 322 FGYARWWGK--ELFGVNGALVGP 342 (347)
T ss_pred ccccccccc--ccccCCCccccC
Confidence 667777886 999999998544
No 71
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=65.76 E-value=19 Score=28.53 Aligned_cols=47 Identities=26% Similarity=0.373 Sum_probs=33.0
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhc-ceeeccCCCcceEECCC
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRN-VSVEGDTGKPNVEFTAD 93 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrn-v~f~g~~G~~~V~Fd~~ 93 (121)
...-++|+++++.|++. | + + .++..|-+.|++ ..+++..|. +.|+.+
T Consensus 276 ~~~~y~a~~~~~~A~~~-----------------a---g-~--~~~~~v~~aL~~~~~~~~~~g~--~~~~~~ 323 (334)
T cd06356 276 AENNYEAIYLYKEAVEK-----------------A---G-T--TDRDAVIEALESGLVCDGPEGK--VCIDGK 323 (334)
T ss_pred hHHHHHHHHHHHHHHHH-----------------H---C-C--CCHHHHHHHHHhCCceeCCCce--EEEecC
Confidence 34566777777777762 1 1 1 456789999996 678888885 999973
No 72
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=62.01 E-value=15 Score=29.49 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=22.3
Q ss_pred chhHHHHHHhcceeeccCCCcceEECCC
Q psy13446 66 TGDRFYRYLRNVSVEGDTGKPNVEFTAD 93 (121)
Q Consensus 66 ~g~~l~~yLrnv~f~g~~G~~~V~Fd~~ 93 (121)
++..|-+.|+++++++..|. |.||.+
T Consensus 317 d~~~v~~aL~~~~~~~~~G~--~~f~~~ 342 (357)
T cd06337 317 DPAAVADAIATLKLDTVVGP--VDFGNS 342 (357)
T ss_pred CHHHHHHHHHcCCcccceee--eecCCC
Confidence 56689999999999988885 999875
No 73
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=60.78 E-value=22 Score=30.16 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=34.8
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECC
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTA 92 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~ 92 (121)
.....|.+|+++|.|++. | +. .++..|.++|..++|.+..|. |.+|.
T Consensus 277 ~~eaaY~~v~l~a~Av~~-----------------a---gs---~d~~~vr~al~g~~~~aP~G~--v~id~ 323 (363)
T PF13433_consen 277 PMEAAYFQVHLWAQAVEK-----------------A---GS---DDPEAVREALAGQSFDAPQGR--VRIDP 323 (363)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------------H---TS-----HHHHHHHHTT--EEETTEE--EEE-T
T ss_pred HHHHHHHHHHHHHHHHHH-----------------h---CC---CCHHHHHHHhcCCeecCCCcc--eEEcC
Confidence 345688999999999982 2 21 678899999999999999997 99999
No 74
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=56.36 E-value=12 Score=29.81 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=16.4
Q ss_pred cceeeccCCCcceEECCCCCcc
Q psy13446 76 NVSVEGDTGKPNVEFTADGVLK 97 (121)
Q Consensus 76 nv~f~g~~G~~~V~Fd~~Gd~~ 97 (121)
...|+|.+|. +.||++|+..
T Consensus 311 ~~~~~g~~G~--~~f~~~g~~~ 330 (336)
T cd06339 311 GAGFSGVTGV--LRLDPDGVIE 330 (336)
T ss_pred CCccccCcce--EEECCCCeEE
Confidence 3467899996 9999999983
No 75
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=54.49 E-value=52 Score=26.04 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=38.7
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhccee---eccCCCcceEECCCCCccc
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSV---EGDTGKPNVEFTADGVLKA 98 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f---~g~~G~~~V~Fd~~Gd~~~ 98 (121)
...-|+|+.+++.||+.. + . . .+++.|-+.|+++++ .+..|.+ +.|+.+.-...
T Consensus 293 ~~~~y~a~~~~~~a~~~a-------g----------~---~--~~~~~v~~aL~~~~~~~~~~~~~~~-~~~~~~~~~~~ 349 (362)
T cd06343 293 AVYGYAAAETLVKVLKQA-------G----------D---D--LTRENIMKQAESLKDVLPDLLPGIR-INTSPDDHLPI 349 (362)
T ss_pred hhHHHHHHHHHHHHHHHh-------C----------C---C--CCHHHHHHHHHhCCCCCccccCccc-eecCccccccc
Confidence 345577777777777621 1 0 1 466789999999997 3333334 99987543323
Q ss_pred ceeEEEEeee
Q psy13446 99 AELKIMNLRP 108 (121)
Q Consensus 99 a~YdIvN~q~ 108 (121)
..+-|+-|+.
T Consensus 350 ~~~~i~~~~~ 359 (362)
T cd06343 350 EQMQLMRFEG 359 (362)
T ss_pred eeEEEEEEec
Confidence 3454666653
No 76
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=43.39 E-value=1e+02 Score=22.08 Aligned_cols=63 Identities=11% Similarity=0.194 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccceeEEE
Q psy13446 29 IKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIM 104 (121)
Q Consensus 29 Vyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~YdIv 104 (121)
+.+||.-+..|++..= ++ .-+..+|.. .-|.+-..|++.+.-..|. +.++.||.=-+|.|.|.
T Consensus 12 ~H~i~aI~n~m~~~~~--t~-~l~~~~r~~---d~W~~dedl~~~iq~l~lP-------at~~~~~~Cp~ArYv~~ 74 (108)
T PF05412_consen 12 WHCIAAIMNHMMGGEF--TT-PLPQRNRPS---DDWADDEDLYQVIQSLRLP-------ATLDRNGACPHARYVLK 74 (108)
T ss_pred HHHHHHHHHHhhccCC--Cc-cccccCCCh---HHccChHHHHHHHHHccCc-------eeccCCCCCCCCEEEEE
Confidence 4455555556653310 11 113343544 3499999999999988773 88999999889999743
No 77
>PF04715 Anth_synt_I_N: Anthranilate synthase component I, N terminal region; InterPro: IPR006805 Anthranilate synthase catalyses the first step in the biosynthesis of tryptophan. Component I catalyses the formation of anthranilate using ammonia and chorismate. The catalytic site lies in the adjacent region, described in the chorismate binding enzyme family (IPR005801 from INTERPRO). This region is involved in feedback inhibition by tryptophan []. This family also contains a region of Para-aminobenzoate synthase component I.; GO: 0016833 oxo-acid-lyase activity, 0009058 biosynthetic process; PDB: 1K0G_B 1K0E_A 1I1Q_A 1I7S_C 1I7Q_C 1QDL_A.
Probab=41.07 E-value=40 Score=23.14 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=27.4
Q ss_pred cCchhHHHHHHhcceeeccCCCcceEECCCCCcccceeEEEEeee
Q psy13446 64 WKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRP 108 (121)
Q Consensus 64 w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~YdIvN~q~ 108 (121)
|.+|..+|..|++.. + . +-+++.+ ...++|.||-+.|
T Consensus 2 ~~~P~~v~~~l~~~~-----~-~-~lLeS~~-~~~gRySiig~~p 38 (140)
T PF04715_consen 2 WLTPLEVFRRLRDEP-----G-S-FLLESAG-SGEGRYSIIGFDP 38 (140)
T ss_dssp -S-HHHHHHHHHTTT-----S-E-EEEEECT-C-CCEEEEEEEEE
T ss_pred cchhHHHHHHHhCCC-----C-e-EEEEeCC-CCCCcEEEEEeCc
Confidence 789999999999855 2 2 8888866 4469999998877
No 78
>KOG0608|consensus
Probab=38.42 E-value=23 Score=33.24 Aligned_cols=66 Identities=24% Similarity=0.343 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhc--CcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccceeEEE
Q psy13446 27 TAIKVYAYGVEDYMS--DSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIM 104 (121)
Q Consensus 27 ~AVyv~A~al~~~~~--~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~YdIv 104 (121)
+--.++||.|-.-=| .|+.+-.+..++. | ..|..|-.||+-|. |+ +-|-++ .+--..|.|+
T Consensus 822 ~h~r~~ahslvgt~nyiapevl~r~g~~q~-c-----dwws~gvil~em~~--------g~--~pf~~~-tp~~tq~kv~ 884 (1034)
T KOG0608|consen 822 QHQRILAHSLVGTPNYIAPEVLARTGYTQL-C-----DWWSVGVILYEMLV--------GQ--PPFLAD-TPGETQYKVI 884 (1034)
T ss_pred hhhhhhhhhhcCCCcccChHHhcccCcccc-c-----hhhHhhHHHHHHhh--------CC--CCccCC-CCCcceeeee
Confidence 344577888742111 2332222223444 8 45999999998763 55 567663 3437789999
Q ss_pred Eeeec
Q psy13446 105 NLRPN 109 (121)
Q Consensus 105 N~q~~ 109 (121)
||+..
T Consensus 885 nw~~~ 889 (1034)
T KOG0608|consen 885 NWRNF 889 (1034)
T ss_pred ehhhc
Confidence 99964
No 79
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.90 E-value=1.5e+02 Score=23.13 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=19.4
Q ss_pred hcceeeccCCCcceEECCC-CCcccceeEEEEee
Q psy13446 75 RNVSVEGDTGKPNVEFTAD-GVLKAAELKIMNLR 107 (121)
Q Consensus 75 rnv~f~g~~G~~~V~Fd~~-Gd~~~a~YdIvN~q 107 (121)
.+..+.+.+|+ |.|+.+ ++... .|-++-++
T Consensus 306 ~~~~~~~~~g~--i~~~~~~~~~~~-~~~~~~~~ 336 (340)
T cd06349 306 AEDVYSGVTGS--TKFDPNTRRVIK-RFVPLVVR 336 (340)
T ss_pred hccCcccceEe--EEECCCCCCccC-ceEEEEEe
Confidence 45556788886 999997 66644 55444344
No 80
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=33.91 E-value=40 Score=25.52 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.1
Q ss_pred CCcceEECCCCCcccceeEEEEeee
Q psy13446 84 GKPNVEFTADGVLKAAELKIMNLRP 108 (121)
Q Consensus 84 G~~~V~Fd~~Gd~~~a~YdIvN~q~ 108 (121)
|=| |+|..+++- .+..++||+.-
T Consensus 124 GLP-veFsp~~~~-~~~W~VINFdl 146 (163)
T TIGR02652 124 GLP-VEFSPAAKQ-DPRWAVINFEL 146 (163)
T ss_pred ccc-eeccCCCCC-CCceeEEEeEe
Confidence 567 999999998 89999999973
No 81
>PF10102 DUF2341: Domain of unknown function (DUF2341); InterPro: IPR018765 This domain of unknown function is found in various bacterial proteins, including MotA/TolQ/ExbB proton channels and other transport proteins.
Probab=32.18 E-value=70 Score=21.56 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=25.8
Q ss_pred CCCcceEEC-CCCCcccceeEEEEeeecCCCCceEEecc
Q psy13446 83 TGKPNVEFT-ADGVLKAAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 83 ~G~~~V~Fd-~~Gd~~~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
+|.. |+|- ++|.+ =-|-|-.|.+....-+.|++|.
T Consensus 2 dg~D-IRf~d~~~~~--L~ywIE~wd~~~~~A~iWVkvp 37 (89)
T PF10102_consen 2 DGSD-IRFYDSDGTP--LPYWIESWDPTNEQALIWVKVP 37 (89)
T ss_pred CCcc-EEEEeCCCCE--eEEEEEECCCCCCeEEEEEECC
Confidence 5654 8776 66766 4576888887766689999985
No 82
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=32.04 E-value=43 Score=25.26 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.2
Q ss_pred CCcceEECCCCCcccceeEEEEeee
Q psy13446 84 GKPNVEFTADGVLKAAELKIMNLRP 108 (121)
Q Consensus 84 G~~~V~Fd~~Gd~~~a~YdIvN~q~ 108 (121)
|=| |+|..+.+. .+..++||+.-
T Consensus 122 GLP-veFsp~~~~-d~~W~VINFdl 144 (161)
T PF09654_consen 122 GLP-VEFSPDPDE-DPCWQVINFDL 144 (161)
T ss_pred ccc-eecCCCCCC-CCceeEEEeee
Confidence 567 999999998 89999999973
No 83
>PRK10280 dipeptidyl carboxypeptidase II; Provisional
Probab=31.11 E-value=1e+02 Score=28.12 Aligned_cols=59 Identities=5% Similarity=-0.004 Sum_probs=36.2
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHH-------HhcceeeccCCCc
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRY-------LRNVSVEGDTGKP 86 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~y-------Lrnv~f~g~~G~~ 86 (121)
...|.+=-+-++||||.|+...+-.. -.++.|+-.- . +-|.+|+++ |+..+-.-.||+|
T Consensus 462 ~~eV~TlFHEfGHalH~lls~~~y~~---~sGt~v~~Df-V--E~PSq~mE~w~~~~~vL~~~a~Hy~Tgep 527 (681)
T PRK10280 462 WDDVITLFHEFGHTLHGLFARQRYAT---LSGTNTPRDF-V--EFPSQINEHWASHPQVFARYARHYQSGEA 527 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCCCcch-h--cCcHHHHHHHhcCHHHHHHHhhccCCCCC
Confidence 55899999999999999996533222 2344454432 1 347788766 4444433345554
No 84
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.16 E-value=73 Score=22.96 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=22.4
Q ss_pred eEECCCCCcccceeEEEEeeecCCCCceEEec
Q psy13446 88 VEFTADGVLKAAELKIMNLRPNLGSQLKWEES 119 (121)
Q Consensus 88 V~Fd~~Gd~~~a~YdIvN~q~~~~g~~~w~~V 119 (121)
|.|+++++++.-.| +-+.-...+-..|++|
T Consensus 70 v~f~a~~~lr~~aY--LKlt~kgk~V~s~eeV 99 (113)
T COG5294 70 VKFTATHNLRKEAY--LKLTHKGKGVTSWEEV 99 (113)
T ss_pred EEEEecCcCCCccE--EEEEecCccEeeeeee
Confidence 99999999988889 3333333567788876
No 85
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=26.11 E-value=52 Score=22.91 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=30.1
Q ss_pred HHHHHHhcceee---c-cCCCcceEECCCCCcccceeEEEEeeecCCCCc
Q psy13446 69 RFYRYLRNVSVE---G-DTGKPNVEFTADGVLKAAELKIMNLRPNLGSQL 114 (121)
Q Consensus 69 ~l~~yLrnv~f~---g-~~G~~~V~Fd~~Gd~~~a~YdIvN~q~~~~g~~ 114 (121)
.+|+|-....+. + ..|| |+|..+-....+...|-|++..+.|.+
T Consensus 48 ~v~~y~~g~~~~~~~~~f~~R--v~f~g~~~~~daSI~I~nv~~sD~G~Y 95 (116)
T cd05879 48 SIFHYGKGQPYIDDVGPFKER--IEWVGNPSRKDGSIVIHNLDYTDNGTF 95 (116)
T ss_pred EEEEeCCCceecccccCccCc--eEEeCCCCcCeeEEEEccCCcccCEEE
Confidence 356665545442 1 1245 999887777778888999998877654
No 86
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=25.98 E-value=24 Score=23.35 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=10.0
Q ss_pred eeEEEEeeecCCCCc
Q psy13446 100 ELKIMNLRPNLGSQL 114 (121)
Q Consensus 100 ~YdIvN~q~~~~g~~ 114 (121)
.+.|.|.|....|.|
T Consensus 48 ~L~I~nv~~~dsG~Y 62 (85)
T cd05853 48 DLMIRSIQLKHAGKY 62 (85)
T ss_pred cEEEecCCHHHCEEE
Confidence 567888887665544
No 87
>TIGR03349 IV_VI_DotU type IV / VI secretion system protein, DotU family. At least two families of proteins, often encoded by adjacent genes, show sequence similarity due to homology between type IV secretion systems and type VI secretion systems. One is the IcmF family (TIGR03348). The other is the family described by this model. Members include DotU from the Legionella pneumophila type IV secretion system. Many of the members of this protein family from type VI secretion systems have an additional C-terminal domain with OmpA/MotB homology.
Probab=25.13 E-value=1.4e+02 Score=22.45 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=17.3
Q ss_pred HHhHHHHHHHHHHHHHHHhcC
Q psy13446 22 VQGISTAIKVYAYGVEDYMSD 42 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~ 42 (121)
...|.+|.|+++..++++.-+
T Consensus 39 ~~~i~~a~Yalca~lDE~vl~ 59 (183)
T TIGR03349 39 SEDIEAARYALCALLDEAVLN 59 (183)
T ss_pred HHHHHhhhHHHHHHHHHHHHc
Confidence 358899999999999888534
No 88
>PF15000 TUSC2: Tumour suppressor candidate 2
Probab=22.64 E-value=35 Score=24.52 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.8
Q ss_pred ceEECCCCCcccceeE
Q psy13446 87 NVEFTADGVLKAAELK 102 (121)
Q Consensus 87 ~V~Fd~~Gd~~~a~Yd 102 (121)
+..||+|||+..-.|.
T Consensus 52 S~y~DeDGdlAhEFYe 67 (111)
T PF15000_consen 52 SMYFDEDGDLAHEFYE 67 (111)
T ss_pred ceeEcCCcchhhhhhh
Confidence 3899999999777886
No 89
>KOG2090|consensus
Probab=22.47 E-value=1.3e+02 Score=27.87 Aligned_cols=45 Identities=9% Similarity=0.112 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHH
Q psy13446 23 QGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRY 73 (121)
Q Consensus 23 ~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~y 73 (121)
..+.+--.-++||+|+|+-++.-.. -+++.|...-. +=|.-|++|
T Consensus 478 ~~vetLFHEmGHAMHSmLGrT~YQh---vtGTRc~tDfa---EiPSiLMEy 522 (704)
T KOG2090|consen 478 SEVETLFHEMGHAMHSMLGRTHYQH---VTGTRCPTDFA---EIPSILMEY 522 (704)
T ss_pred HHHHHHHHHHHHHHHHHhccchhcc---ccCcccchhHh---hhhHHHHHH
Confidence 3788889999999999998876444 26777877532 458888888
No 90
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=22.35 E-value=71 Score=22.45 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=23.5
Q ss_pred hHHHHHHhcceeeccCCCcceEECCCCCcccceeEEE
Q psy13446 68 DRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIM 104 (121)
Q Consensus 68 ~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~YdIv 104 (121)
..|-+|.++..++ ..|.+.|.|..+-+++.+.|.|-
T Consensus 80 ~~l~~~a~~qgy~-~~G~v~V~~~~d~~L~~G~~rv~ 115 (116)
T PF12401_consen 80 DYLAEHAREQGYT-FVGPVTVEFEEDPDLHTGQFRVR 115 (116)
T ss_dssp HHHHHHHHHHT-B--SS--EEEEEEETTS-TT-EEEE
T ss_pred HHHHHHHHHCCCe-ecCCEEEEEEECCCCCCceEEEe
Confidence 3456777888883 56888899999999988888763
No 91
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=22.12 E-value=2.1e+02 Score=21.98 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=22.4
Q ss_pred CchhHHHHHHhcceeeccCCCcceEECCCCCc
Q psy13446 65 KTGDRFYRYLRNVSVEGDTGKPNVEFTADGVL 96 (121)
Q Consensus 65 ~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~ 96 (121)
.+++.|.+.|++++..+-.|-+ +.|++ +|.
T Consensus 300 ~~~~~v~~al~~~~~~~~~g~~-~~~~~-~~h 329 (336)
T cd06326 300 PTRESLLAALEAMGKFDLGGFR-LDFSP-GNH 329 (336)
T ss_pred CCHHHHHHHHHhcCCCCCCCeE-EecCc-ccc
Confidence 4678899999999884444544 99977 666
Done!