Query psy13446
Match_columns 121
No_of_seqs 62 out of 64
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 19:38:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qel_B Glutamate [NMDA] recept 99.8 5.9E-20 2E-24 147.4 7.8 106 4-120 242-347 (364)
2 3ks9_A Mglur1, metabotropic gl 99.8 1.6E-19 5.5E-24 150.1 10.2 88 23-120 384-471 (496)
3 3mq4_A Mglur7, metabotropic gl 99.8 2E-19 7E-24 148.3 7.1 91 20-120 374-464 (481)
4 4gpa_A Glutamate receptor 4; P 99.8 2E-18 7E-23 134.2 10.1 92 21-120 276-367 (389)
5 3sm9_A Mglur3, metabotropic gl 99.7 1.2E-18 4E-23 144.4 7.2 86 22-120 365-459 (479)
6 3qek_A NMDA glutamate receptor 99.7 3.6E-17 1.2E-21 129.2 10.7 104 4-120 261-365 (384)
7 2e4u_A Metabotropic glutamate 99.6 3.6E-15 1.2E-19 124.6 8.9 90 20-120 364-460 (555)
8 3o21_A Glutamate receptor 3; p 99.5 7.4E-14 2.5E-18 111.6 8.1 92 21-120 278-369 (389)
9 3om0_A Glutamate receptor, ion 99.4 3E-13 1E-17 107.0 8.4 87 21-120 284-370 (393)
10 3hsy_A Glutamate receptor 2; l 99.4 6.8E-13 2.3E-17 105.0 8.7 91 20-120 271-363 (376)
11 3saj_A Glutamate receptor 1; r 99.4 1.2E-12 4E-17 103.7 9.5 85 21-108 275-359 (384)
12 3kg2_A Glutamate receptor 2; I 99.4 1.4E-12 4.7E-17 111.9 8.7 85 21-108 272-356 (823)
13 1jdp_A NPR-C, atrial natriuret 99.4 2.2E-12 7.5E-17 103.5 9.0 77 21-120 314-390 (441)
14 4f11_A Gamma-aminobutyric acid 99.2 2.2E-11 7.4E-16 97.2 5.9 86 22-120 314-399 (433)
15 1dp4_A Atrial natriuretic pept 99.1 8.4E-11 2.9E-15 93.5 7.8 76 21-120 317-392 (435)
16 3h6g_A Glutamate receptor, ion 99.1 4.7E-10 1.6E-14 88.5 8.2 77 21-108 288-365 (395)
17 1usg_A Leucine-specific bindin 98.3 1.6E-06 5.4E-11 66.1 6.8 62 21-107 276-337 (346)
18 3ipc_A ABC transporter, substr 98.2 5.3E-06 1.8E-10 63.7 8.2 72 21-117 275-346 (356)
19 4evq_A Putative ABC transporte 98.2 5.6E-06 1.9E-10 63.8 8.0 64 21-108 289-352 (375)
20 4eyg_A Twin-arginine transloca 98.0 1.6E-05 5.5E-10 61.1 7.9 74 20-119 280-354 (368)
21 3h5l_A Putative branched-chain 97.8 4.2E-05 1.4E-09 60.4 6.1 70 21-108 304-385 (419)
22 3td9_A Branched chain amino ac 97.7 9E-05 3.1E-09 57.1 7.3 61 21-107 289-350 (366)
23 3hut_A Putative branched-chain 97.7 7.8E-05 2.7E-09 57.1 6.9 63 20-107 277-341 (358)
24 3n0w_A ABC branched chain amin 97.7 0.00011 3.7E-09 57.2 7.0 71 21-116 282-352 (379)
25 3i09_A Periplasmic branched-ch 97.6 0.00013 4.3E-09 56.6 7.0 70 21-116 279-348 (375)
26 3n0x_A Possible substrate bind 97.2 0.0017 5.9E-08 50.4 8.5 68 22-115 285-353 (374)
27 1pea_A Amidase operon; gene re 97.1 0.0013 4.6E-08 51.2 7.5 62 20-106 284-345 (385)
28 3lkb_A Probable branched-chain 97.1 0.0014 4.6E-08 51.0 7.3 73 22-120 287-370 (392)
29 4f06_A Extracellular ligand-bi 97.1 0.0016 5.4E-08 50.8 7.5 74 22-120 285-358 (371)
30 3snr_A Extracellular ligand-bi 96.8 0.0029 1E-07 47.8 6.9 70 20-108 282-355 (362)
31 3i45_A Twin-arginine transloca 96.6 0.0068 2.3E-07 47.0 7.5 60 22-107 286-346 (387)
32 4gnr_A ABC transporter substra 96.5 0.0034 1.2E-07 48.0 5.4 59 21-107 282-341 (353)
33 3sg0_A Extracellular ligand-bi 96.2 0.0091 3.1E-07 45.6 6.2 70 20-108 306-379 (386)
34 3eaf_A ABC transporter, substr 96.1 0.0086 3E-07 46.6 5.5 68 20-107 288-358 (391)
35 3lop_A Substrate binding perip 95.5 0.049 1.7E-06 41.6 7.6 65 20-108 284-350 (364)
36 3ckm_A YRAM (HI1655), LPOA; pe 75.5 2.3 7.8E-05 32.2 3.4 29 76-107 284-312 (327)
37 2h4a_A YRAM (HI1655); perplasm 44.8 13 0.00044 28.8 2.6 28 77-107 283-310 (325)
38 3kpe_A Fusion glycoprotein F0; 26.5 57 0.002 19.4 2.8 25 17-41 15-39 (51)
39 3ke2_A Uncharacterized protein 22.9 54 0.0018 22.8 2.5 36 69-108 49-85 (117)
40 2f6m_A Suppressor protein STP2 22.0 59 0.002 20.2 2.3 15 23-37 16-30 (65)
41 1upt_B Golgi autoantigen, golg 21.8 15 0.0005 22.8 -0.5 15 71-85 7-21 (60)
No 1
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=99.80 E-value=5.9e-20 Score=147.45 Aligned_cols=106 Identities=26% Similarity=0.380 Sum_probs=88.3
Q ss_pred cccceeeeEEecCcchhHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccC
Q psy13446 4 EVREKKKGVHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDT 83 (121)
Q Consensus 4 ~~p~g~lgv~~d~s~~~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~ 83 (121)
+.|.|++|+++.++.....+.++|||+++|+|+++|.++...+. .+..+|.......|..|.+|++||++++|+|.
T Consensus 242 ~~~~g~~~~~~~~W~~~~~~~~yDaV~~~A~A~~~~~~~~~~i~---~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl- 317 (364)
T 3qel_B 242 EFPTGLISVSYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIP---EPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR- 317 (364)
T ss_dssp TSCTTCEECCBCTTTSCHHHHHHHHHHHHHHHHHHHHTTTSCCC---CCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE-
T ss_pred cCCCceEEEeeccchhhHHHHHHHHHHHHHHHHHHHHhccCCCC---CCCCCCCCCCCCccCCHHHHHHHHhhceEeCc-
Confidence 46899999999998777789999999999999999986533333 24667998743358999999999999999874
Q ss_pred CCcceEECCCCCcccceeEEEEeeecCCCCceEEecc
Q psy13446 84 GKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 84 G~~~V~Fd~~Gd~~~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
+ |.||++|++.++.|||+|++. ...|++||
T Consensus 318 --~-i~F~~~G~~~~~~~~Iinl~~----~~~~~~VG 347 (364)
T 3qel_B 318 --D-LSFSEDGYQMHPKLVIILLNK----ERKWERVG 347 (364)
T ss_dssp --E-CCBCTTSSBSSCCEEEEEECT----TSCEEEEE
T ss_pred --e-EEECCCCCcccceEEEEEEcC----CCCcEEEE
Confidence 4 999999999999999999985 23577776
No 2
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=99.80 E-value=1.6e-19 Score=150.05 Aligned_cols=88 Identities=20% Similarity=0.271 Sum_probs=73.3
Q ss_pred HhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccceeE
Q psy13446 23 QGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELK 102 (121)
Q Consensus 23 ~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Yd 102 (121)
.+||+||||+|||||+|+.+... . ....|..... ..||+|.+|||||+|++.+|++ |.||++||+ .+.||
T Consensus 384 ~~vy~AVyavAhALh~m~~~~~~-~----~~~~c~~~~~---~~~~qL~~~Lk~v~f~~~~g~~-v~fd~~gd~-~~~Yd 453 (496)
T 3ks9_A 384 GFVINAIYAMAHGLQNMHHALCP-G----HVGLCDAMKP---IDGSKLLDFLIKSSFIGVSGEE-VWFDEKGDA-PGRYD 453 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHST-T----CSSCCGGGSS---CCHHHHHHHHHTCEEECTTSCE-EECCTTSCC-CCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhccCC-C----CCCCCcCCCC---CCHHHHHHHHHhcCCcCCCCCE-EEECCCCCc-cceEE
Confidence 46999999999999999864211 1 2234887643 5899999999999999999987 999999999 89999
Q ss_pred EEEeeecCCCCceEEecc
Q psy13446 103 IMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 103 IvN~q~~~~g~~~w~~VG 120 (121)
|+|||..++|...+++||
T Consensus 454 I~n~~~~~~~~~~~~~VG 471 (496)
T 3ks9_A 454 IMNLQYTEANRYDYVHVG 471 (496)
T ss_dssp EEEEEECC--CEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEE
Confidence 999999888899999998
No 3
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.78 E-value=2e-19 Score=148.27 Aligned_cols=91 Identities=21% Similarity=0.333 Sum_probs=70.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccc
Q psy13446 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAA 99 (121)
Q Consensus 20 ~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a 99 (121)
+.+.+||+|||++|||||+|+.+.... ....|..... ..||+|.+||||++|++.+|++ |.||++||+ .+
T Consensus 374 ~~~~~vy~AVyavA~ALh~m~~~~~~~-----~~~~c~~~~~---~~~~qL~~~Lk~v~F~~~~G~~-v~fd~~Gd~-~~ 443 (481)
T 3mq4_A 374 GKVQFVIDAVYAMAHALHHMNKDLCAD-----YRGVCPEMEQ---AGGKKLLKYIRNVNFNGSAGTP-VMFNKNGDA-PG 443 (481)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCC---------CCHHHHT---SCHHHHHHHHHTCEEECTTSSE-EECCTTSCC-CC
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhCCC-----CCCCCCCCCC---cCHHHHHHHHhcceeecCCCCE-EEECCCCCC-ce
Confidence 346689999999999999998642111 1234876532 5899999999999999999987 999999999 89
Q ss_pred eeEEEEeeecCCCCceEEecc
Q psy13446 100 ELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 100 ~YdIvN~q~~~~g~~~w~~VG 120 (121)
.|||+|||....+...+++||
T Consensus 444 ~YdI~n~~~~~~~~~~~~~VG 464 (481)
T 3mq4_A 444 RYDIFQYQTTNTSNPGYRLIG 464 (481)
T ss_dssp EEEEEEEC-----CCCEEEEE
T ss_pred eEEEEEEEECCCCcEEEEEEE
Confidence 999999998666677888888
No 4
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=99.76 E-value=2e-18 Score=134.22 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=72.8
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
....+|||||++|+||++|+.+..+...... ..+|.......|..|.+|.+||++++|+|.+|+ |+||++|||..+.
T Consensus 276 ~~a~~YDAV~~~A~Al~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~--v~Fd~~G~r~~~~ 352 (389)
T 4gpa_A 276 TSALTYDGVLVMAETFRSLRRQKIDISRRGN-AGDCLANPAAPWGQGIDMERTLKQVRIQGLTGN--VQFDHYGRRVNYT 352 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCTTC-CCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEE--EEBCTTSCBCSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCC-ccccccCCCcccchHHHHHHHHHhCceecCcee--EEECCCCCCCCCE
Confidence 3567999999999999999877554443222 222443333569999999999999999999995 9999999998899
Q ss_pred eEEEEeeecCCCCceEEecc
Q psy13446 101 LKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 101 YdIvN~q~~~~g~~~w~~VG 120 (121)
|||+|+|++ .|++||
T Consensus 353 ~~I~~l~~~-----~~~~VG 367 (389)
T 4gpa_A 353 MDVFELKST-----GPRKVG 367 (389)
T ss_dssp EEEEEEETT-----EEEEEE
T ss_pred EEEEEEECC-----EEEEEE
Confidence 999999853 377776
No 5
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=144.36 Aligned_cols=86 Identities=16% Similarity=0.281 Sum_probs=72.7
Q ss_pred HHhHHHHHHHHHHHHHHHhc--CcccCCCCCCCCCCCCCCCCCccCchhHHH-HHHhcceeecc------CCCcceEECC
Q psy13446 22 VQGISTAIKVYAYGVEDYMS--DSSNANLSLNTQLSCDGVGESRWKTGDRFY-RYLRNVSVEGD------TGKPNVEFTA 92 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~--~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~-~yLrnv~f~g~------~G~~~V~Fd~ 92 (121)
..+||+|||++|||||+|+. |+. .+..|.... ...||+|. +||||++|++. .|++ |.||+
T Consensus 365 ~~~vy~AVyavA~ALh~m~~~~~~~-------~~~~c~~~~---~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~-v~fd~ 433 (479)
T 3sm9_A 365 IMFVVNAVYAMAHALHKMQRTLCPN-------TTKLCDAMK---ILDGKKLYKDYLLKINFTAPFNPNKDADSI-VKFDT 433 (479)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT-------CSSCCHHHH---SCCHHHHHHHTGGGCCEECTTC-----CCE-ECCCT
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCC-------CCcCCCCCC---CcChHHHHHHHhcceeeccccCccccCCCe-EEECC
Confidence 57899999999999999987 422 223487643 37899999 99999999988 7886 99999
Q ss_pred CCCcccceeEEEEeeecCCCCceEEecc
Q psy13446 93 DGVLKAAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 93 ~Gd~~~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
+||+ .+.|||+|||.. +|...|++||
T Consensus 434 ~G~~-~~~YdI~n~~~~-~~~~~~~~VG 459 (479)
T 3sm9_A 434 FGDG-MGRYNVFNFQNV-GGKYSYLKVG 459 (479)
T ss_dssp TCBC-CCCEEEEEEEES-SSCEEEEEEE
T ss_pred CCCc-ccceEEEEEEEC-CCcEEEEEEE
Confidence 9999 899999999986 7789999998
No 6
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=99.71 E-value=3.6e-17 Score=129.23 Aligned_cols=104 Identities=28% Similarity=0.395 Sum_probs=87.7
Q ss_pred cccceeeeEEecCcchhHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhccee-ecc
Q psy13446 4 EVREKKKGVHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSV-EGD 82 (121)
Q Consensus 4 ~~p~g~lgv~~d~s~~~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f-~g~ 82 (121)
+.+.|++|+.+...... .+.+|||||++|||||+|+.|.. .. .++.+|.... ..|..+..|.++|++++| +|.
T Consensus 261 ~~~~g~lg~~~~~~~~~-~~~~YdAV~~~a~Al~~~~~~~~-~~---~~~~~c~~~~-~~~~~~~~l~~~~~~~~f~~G~ 334 (384)
T 3qek_A 261 YAPDGIIGLQLINGKNE-SAHISDAVAVVAQAIHELFEMEN-IT---DPPRGCVGNT-NIWKTGPLFKRVLMSSKYPDGV 334 (384)
T ss_dssp SCCTTCEEEEETTTTCH-HHHHHHHHHHHHHHHHHHHTSSS-CC---CCCSCCTTCC-CCCTTHHHHHHHHHTCCEEEET
T ss_pred ccCCccEEEEEcCCCch-hHHHHHHHHHHHHHHHHHHhccC-CC---CCCCccccCC-CccccHHHHHHHHhcCCccCCC
Confidence 46799999999888776 89999999999999999987643 22 2455697653 469999999999999998 999
Q ss_pred CCCcceEECCCCCcccceeEEEEeeecCCCCceEEecc
Q psy13446 83 TGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 83 ~G~~~V~Fd~~Gd~~~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
+|+ |.||++|++..+.|||+||+. ..|++||
T Consensus 335 ~G~--v~fd~~G~~~~~~~~I~~~~~-----~~~~~VG 365 (384)
T 3qek_A 335 TGR--IEFNEDGDRKFAQYSIMNLQN-----RKLVQVG 365 (384)
T ss_dssp TEE--ECBCTTSCBCSCCEEEEEEET-----TEEEEEE
T ss_pred Ccc--eEECCCCCCCcccEEEEEEcC-----CceEEEE
Confidence 994 999999999899999999985 3677776
No 7
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=99.58 E-value=3.6e-15 Score=124.64 Aligned_cols=90 Identities=18% Similarity=0.289 Sum_probs=73.7
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHH-HHhcceee------ccCCCcceEECC
Q psy13446 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYR-YLRNVSVE------GDTGKPNVEFTA 92 (121)
Q Consensus 20 ~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~-yLrnv~f~------g~~G~~~V~Fd~ 92 (121)
+..+++|||||++|||||+|..+... . .+ ..|.... +.+|++|.+ ||++++|+ |.+|.+ |.||+
T Consensus 364 ~~~~~~YdAVya~A~AL~~~~~~~~~-~---~~-~~~~~~~---~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~-v~fd~ 434 (555)
T 2e4u_A 364 SKIMFVVNAVYAMAHALHKMQRTLCP-Q---TT-KLCDAMK---ILDGKKLYKEYLLKIQFTAPFNPNKGADSI-VKFDT 434 (555)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCT-T---CS-SCCGGGT---SCCHHHHHHHHTTCEEECCSSSCCSSSCCE-EECCT
T ss_pred ccchhhHHHHHHHHHHHHHHHhhhcC-C---CC-ccccccC---CCCcccccHHhHhceeecccccccCCCCCe-EEEcC
Confidence 45789999999999999999753111 1 12 3386643 478999999 99999999 999986 99999
Q ss_pred CCCcccceeEEEEeeecCCCCceEEecc
Q psy13446 93 DGVLKAAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 93 ~Gd~~~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
+||+ .+.|+|+|||. .+|.+.+++||
T Consensus 435 ~Gd~-~~~y~I~~~~~-~~g~~~~~~VG 460 (555)
T 2e4u_A 435 FGDG-MGRYNVFNLQQ-TGGKYSYLKVG 460 (555)
T ss_dssp TSCC-CCCEEEEEEEC-TTSSCEEEEEE
T ss_pred CCCc-cceEEEEEEEe-cCCcEEEEEEE
Confidence 9999 69999999997 66778899998
No 8
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=99.48 E-value=7.4e-14 Score=111.64 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=69.8
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
.....||||+++|+||+.+..+...... ..++.+|.......|.+|.+|.++|++++|+|.+|. |.||++||+....
T Consensus 278 ~a~~~YDAv~~~a~Al~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~--i~Fd~~G~~~~~~ 354 (389)
T 3o21_A 278 TSALTHDAILVIAEAFRYLRRQRVDVSR-RGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGN--IQFDTYGRRTNYT 354 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCC------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEE--ECBCTTSBBCSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCccccc-CCCCCcCCCCCCCCCCCcHHHHHHHHhCccccccee--eeeCCCCCcccce
Confidence 4789999999999999999754322221 123456843211349999999999999999999995 9999999998889
Q ss_pred eEEEEeeecCCCCceEEecc
Q psy13446 101 LKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 101 YdIvN~q~~~~g~~~w~~VG 120 (121)
|+|+||+++ .|++||
T Consensus 355 ~~i~~~~~~-----g~~~VG 369 (389)
T 3o21_A 355 IDVYEMKVS-----GSRKAG 369 (389)
T ss_dssp EEEEEEETT-----EEEEEE
T ss_pred EEEEEEcCC-----Cceeee
Confidence 999999742 266666
No 9
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=99.43 E-value=3e-13 Score=107.03 Aligned_cols=87 Identities=24% Similarity=0.392 Sum_probs=70.6
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
.....||||+++|+||+.+.... ... .+..+|... ..|.+|..|.++|++++|+|.+|+ |.||++|++..+.
T Consensus 284 ~a~~~YDAv~~la~Al~~~~~~~-~~~---~~~~~c~~~--~~~~~g~~l~~~l~~~~f~G~tG~--i~fd~~G~~~~~~ 355 (393)
T 3om0_A 284 SAALMFDAVHVVVSAVRELNRSQ-EIG---VKPLACTSA--NIWPHGTSLMNYLRMVEYDGLTGR--VEFNSKGQRTNYT 355 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS-CCC---CCCCCTTCC--CCCTTHHHHHHHHTTCCEEETTEE--ECBCTTSCBCSCE
T ss_pred HHHHHHhHHHHHHHHHHHHhhcc-cCc---CCCcCCCCC--CcccCchHHHHHHHhCCCCCccce--EEeCCCCccccee
Confidence 45689999999999999886432 122 245679876 449999999999999999999995 9999999998999
Q ss_pred eEEEEeeecCCCCceEEecc
Q psy13446 101 LKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 101 YdIvN~q~~~~g~~~w~~VG 120 (121)
|+|+||+.+ .|++||
T Consensus 356 ~~i~~~~~~-----g~~~VG 370 (393)
T 3om0_A 356 LRILEKSRQ-----GHREIG 370 (393)
T ss_dssp EEEEEEETT-----EEEEEE
T ss_pred EEEEEeccC-----CceEee
Confidence 999999842 256665
No 10
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=99.40 E-value=6.8e-13 Score=105.00 Aligned_cols=91 Identities=20% Similarity=0.279 Sum_probs=71.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCC--CCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcc
Q psy13446 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSC--DGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLK 97 (121)
Q Consensus 20 ~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C--~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~ 97 (121)
......||||+++|+|++.+..+.....+ ...+.+| ... ..|.+|.+|.++|++++|+|.+|+ |.||++|++.
T Consensus 271 ~~aa~~YDav~~la~Ai~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~g~~l~~~l~~~~f~G~tG~--i~fd~~G~~~ 345 (376)
T 3hsy_A 271 YTSALTYDAVQVMTEAFRNLRKQRIEISR-RGNAGDCLANPA--VPWGQGVEIERALKQVQVEGLSGN--IKFDQNGKRI 345 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSC-CCCCCCTTCSSC--CCCHHHHHHHHHHHHCCEEETTEE--ECBCTTSBBC
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCCCccCCCCC--CCcCCcHHHHHHHHhcCcCCCccc--eeECCCCCCc
Confidence 34689999999999999998754332222 1234568 443 449999999999999999999995 9999999998
Q ss_pred cceeEEEEeeecCCCCceEEecc
Q psy13446 98 AAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 98 ~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
.+.|+|+||+.+ .|++||
T Consensus 346 ~~~~~i~~~~~~-----g~~~VG 363 (376)
T 3hsy_A 346 NYTINIMELKTN-----GPRKIG 363 (376)
T ss_dssp SCEEEEEEEETT-----EEEEEE
T ss_pred cceEEEEEecCC-----CceEEE
Confidence 999999999732 256665
No 11
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=99.39 E-value=1.2e-12 Score=103.70 Aligned_cols=85 Identities=20% Similarity=0.271 Sum_probs=69.4
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
.....||||+++|+||+.+.....+... ..++.+|.......|.+|..|.++|++++|+|.+|+ |.||++|++....
T Consensus 275 ~aa~~YDav~~~a~Al~~~~~~~~~~~~-~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~--i~fd~~G~~~~~~ 351 (384)
T 3saj_A 275 TSALTYDGVKVMAEAFQSLRRQRIDISR-RGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGN--VQFNEKGRRTNYT 351 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCC-CCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEE--ECBCTTSBBCSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccceec-CCCCCCCCCCCCCCcCCcHHHHHHHHhCcCccccee--eEeCCCCCcccce
Confidence 3678999999999999988753222221 124556988643459999999999999999999996 9999999998999
Q ss_pred eEEEEeee
Q psy13446 101 LKIMNLRP 108 (121)
Q Consensus 101 YdIvN~q~ 108 (121)
|+|+|++.
T Consensus 352 ~~i~~~~~ 359 (384)
T 3saj_A 352 LHVIEMKH 359 (384)
T ss_dssp EEEEEEET
T ss_pred EEEEEecc
Confidence 99999985
No 12
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.36 E-value=1.4e-12 Score=111.89 Aligned_cols=85 Identities=20% Similarity=0.289 Sum_probs=70.8
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
....+||||+++|+||+.+..+...... ..++.+|.......|.+|++|.++|++++|+|.+|. |.||++|++..+.
T Consensus 272 ~a~~~YDAv~~la~Al~~~~~~~~~~~~-~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~--i~fd~~G~~~~~~ 348 (823)
T 3kg2_A 272 TSALTYDAVQVMTEAFRNLRKQRIEISR-RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGN--IKFDQNGKRINYT 348 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCCC-SSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEE--CCBCSSSCBCSCE
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcccccc-CCCCCCccCCCCCcccchHHHHHHHHhcccCCcccC--eEECCCCcccccE
Confidence 3679999999999999999865433332 234566988744568999999999999999999996 9999999998899
Q ss_pred eEEEEeee
Q psy13446 101 LKIMNLRP 108 (121)
Q Consensus 101 YdIvN~q~ 108 (121)
|+|+|++.
T Consensus 349 ~~I~~~~~ 356 (823)
T 3kg2_A 349 INIMELKT 356 (823)
T ss_dssp EEEEEECS
T ss_pred EEEEEEcC
Confidence 99999984
No 13
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=99.36 E-value=2.2e-12 Score=103.46 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=64.3
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
....+|||||++|+|||.++.+ + . | |.+|++|.++|++++|+|.+|. |.||++||+ .+.
T Consensus 314 ~~~~~YdAv~~~A~Al~~~~~~----~------~-~-------~~~~~~l~~~l~~~~f~g~~G~--v~fd~~Gd~-~~~ 372 (441)
T 1jdp_A 314 FVEGFHDAILLYVLALHEVLRA----G------Y-S-------KKDGGKIIQQTWNRTFEGIAGQ--VSIDANGDR-YGD 372 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----T------C-C-------TTCHHHHHHHHSSEEEEETTEE--EEECTTSBB-CCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----C------C-C-------CCCHHHHHHHHhCCeeECCccc--eEECCCCCc-ccc
Confidence 4568999999999999988743 0 0 1 4678999999999999999995 999999999 699
Q ss_pred eEEEEeeecCCCCceEEecc
Q psy13446 101 LKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 101 YdIvN~q~~~~g~~~w~~VG 120 (121)
|+|+|||...+| .|++||
T Consensus 373 ~~I~~~~~~~~g--~~~~VG 390 (441)
T 1jdp_A 373 FSVIAMTDVEAG--TQEVIG 390 (441)
T ss_dssp EEEEEEEETTTT--EEEEEE
T ss_pred EEEEecccCCCC--ceEEEE
Confidence 999999976655 477776
No 14
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=99.18 E-value=2.2e-11 Score=97.22 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=64.3
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
....||||+++|+||+.+..+....+. ..+|++..-..|.+|++|.++|++++|+|.+|+ |.| ++||+ .+.|
T Consensus 314 a~~~YDAv~~la~Al~~a~~~~~~~~~----~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~--v~f-~~Gd~-~~~~ 385 (433)
T 4f11_A 314 HGYAYDGIWVIAKTLQRAMETLHASSR----HQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQ--VVF-RNGER-MGTI 385 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSS----CCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEE--EEE-ETTEE-ECEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCC----CCcccccccccHHHHHHHHHHHHhcEEEccceE--EEE-ecCce-eeeE
Confidence 457999999999999998755322211 111222111247789999999999999999996 999 89999 5999
Q ss_pred EEEEeeecCCCCceEEecc
Q psy13446 102 KIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 102 dIvN~q~~~~g~~~w~~VG 120 (121)
+|++||. ..|++||
T Consensus 386 ~I~~~~~-----g~~~~VG 399 (433)
T 4f11_A 386 KFTQFQD-----SREVKVG 399 (433)
T ss_dssp EEEEEET-----TEEEEEE
T ss_pred EEEEEEC-----CceEEEE
Confidence 9999985 2567766
No 15
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=99.15 E-value=8.4e-11 Score=93.46 Aligned_cols=76 Identities=13% Similarity=0.284 Sum_probs=61.3
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
....+|||||++|+||+.++.+ .. .|.++++|.++|++++|+|.+|. |.||++||+ .+.
T Consensus 317 ~~~~~ydav~~~a~Al~~~~~~--------------~~----~~~~~~~l~~~l~~~~f~g~~G~--v~fd~~g~~-~~~ 375 (435)
T 1dp4_A 317 IPASFHDGLLLYVQAVTETLAQ--------------GG----TVTDGENITQRMWNRSFQGVTGY--LKIDRNGDR-DTD 375 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--------------TC----CTTCHHHHHHTTTTEEEEETTEE--EEECTTSBB-CCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--------------CC----CCCCHHHHHHHHhCceeecccee--EEECCCCCc-cce
Confidence 4678999999999999988633 11 13678899999999999999996 999999999 589
Q ss_pred eEEEEeeecCCCCceEEecc
Q psy13446 101 LKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 101 YdIvN~q~~~~g~~~w~~VG 120 (121)
|+|+||+ ..+| .|+.||
T Consensus 376 ~~i~~~~-~~~g--~~~~vg 392 (435)
T 1dp4_A 376 FSLWDMD-PETG--AFRVVL 392 (435)
T ss_dssp EEEEEEC-TTTC--CEEEEE
T ss_pred eEEEEec-CCCC--cEEEEE
Confidence 9999993 2223 477776
No 16
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=99.05 E-value=4.7e-10 Score=88.47 Aligned_cols=77 Identities=22% Similarity=0.492 Sum_probs=64.7
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECC-CCCcccc
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTA-DGVLKAA 99 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~-~Gd~~~a 99 (121)
.....||||+++|+||+.... .+ .+..+|... ..|.+|..|.++|++++|+|.+|. |.||+ +|++...
T Consensus 288 ~aa~~YDav~~~a~Al~~a~~----~~---~~~~~c~~~--~~~~~~~~l~~al~~~~~~G~tG~--i~fd~~~G~~~~~ 356 (395)
T 3h6g_A 288 DAALMYDAVHVVSVAVQQFPQ----MT---VSSLQCNRH--KPWRFGTRFMSLIKEAHWEGLTGR--ITFNKTNGLRTDF 356 (395)
T ss_dssp HHHHHHHHHHHHHHHHHTCTT----CC---CCCCCTTSC--CCCTTHHHHHHHHHHCEEEETTEE--EECCTTTSEECCC
T ss_pred hHHHHHhHHHHHHHHHHhhhc----CC---CcCCCCCCC--CcCcccHHHHHHHhcCCCcCccee--eEecCCCCeecCC
Confidence 456899999999999986521 11 245669876 459999999999999999999996 99999 9999888
Q ss_pred eeEEEEeee
Q psy13446 100 ELKIMNLRP 108 (121)
Q Consensus 100 ~YdIvN~q~ 108 (121)
.|+|++++.
T Consensus 357 ~~~i~~~~~ 365 (395)
T 3h6g_A 357 DLDVISLKE 365 (395)
T ss_dssp CEEEEEEET
T ss_pred eEEEEEecc
Confidence 999999984
No 17
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=98.28 E-value=1.6e-06 Score=66.07 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=53.3
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
+....|||++++|+||+.. + . .+++.|.++|++++|+|.+|. |.||++|++....
T Consensus 276 ~~~~~yda~~~~~~al~~~-------g-------------~---~~~~~l~~~l~~~~~~g~~G~--i~f~~~g~~~~~~ 330 (346)
T 1usg_A 276 YVWITYAAVQSLATALERT-------G-------------S---DEPLALVKDLKANGANTVIGP--LNWDEKGDLKGFD 330 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------C-------------C---CCHHHHHHHHHHHCEEETTEE--ECBCTTSSBSSCC
T ss_pred hHHHHHHHHHHHHHHHHHh-------C-------------C---CCHHHHHHHHHhCCCccceee--eEECCCCCccCCc
Confidence 5668899999999999854 1 0 356799999999999999994 9999999997788
Q ss_pred eEEEEee
Q psy13446 101 LKIMNLR 107 (121)
Q Consensus 101 YdIvN~q 107 (121)
|.|++||
T Consensus 331 ~~i~~~~ 337 (346)
T 1usg_A 331 FGVFQWH 337 (346)
T ss_dssp CEEEEEC
T ss_pred eEEEEEe
Confidence 9999998
No 18
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=98.19 E-value=5.3e-06 Score=63.67 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=59.0
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
....-|||++++|.||+.. + . .++..|.++|++++|+|.+|. |.||++|++....
T Consensus 275 ~~~~~yda~~~~~~al~~a--------------------g-~--~~~~~~~~~l~~~~~~g~~G~--~~f~~~g~~~~~~ 329 (356)
T 3ipc_A 275 YTLYSYAAMQAIAGAAKAA--------------------G-S--VEPEKVAEALKKGSFPTALGE--ISFDEKGDPKLPG 329 (356)
T ss_dssp THHHHHHHHHHHHHHHHHH--------------------T-C--CCHHHHHHHHTTCCBCCTTSS--BCBCTTSCBCCCC
T ss_pred hHHHHHHHHHHHHHHHHHh--------------------C-C--CCHHHHHHHHHhCCCCCccee--eEECCCCCccCCC
Confidence 4567899999999999833 1 1 567899999999999999995 9999999997789
Q ss_pred eEEEEeeecCCCCceEE
Q psy13446 101 LKIMNLRPNLGSQLKWE 117 (121)
Q Consensus 101 YdIvN~q~~~~g~~~w~ 117 (121)
|.|+.|+.+.+|.++.+
T Consensus 330 ~~i~~~~~~~~G~~~~~ 346 (356)
T 3ipc_A 330 YVMYEWKKGPDGKFTYI 346 (356)
T ss_dssp CEEEEEEECTTSSEEEE
T ss_pred eEEEEEEECCCCcEEEE
Confidence 99999997555554443
No 19
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=98.18 E-value=5.6e-06 Score=63.85 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=53.1
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
....-|||++++++||+.. + ..|.+++.|.++|++++|+|.+|. |.||++|++ ...
T Consensus 289 ~~~~~yda~~~~~~al~~~-------g--------------~~~~~~~~l~~~l~~~~~~g~~G~--i~f~~~g~~-~~~ 344 (375)
T 4evq_A 289 FAVQGWDAGQLLDAGVKAV-------G--------------GDVAKRKELNAAMAAASFASPRGP--FKLSAAHNP-VQN 344 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------T--------------TCTTCHHHHHHHHHTCEEEETTEE--EEBCTTSCB-CCC
T ss_pred HHHHHHHHHHHHHHHHHHh-------C--------------CCCCCHHHHHHHHhcCCcccCCcc--eeECCCCCc-ccc
Confidence 4557899999999999832 1 114678899999999999999995 999999999 567
Q ss_pred eEEEEeee
Q psy13446 101 LKIMNLRP 108 (121)
Q Consensus 101 YdIvN~q~ 108 (121)
|.|++|+.
T Consensus 345 ~~i~~~~~ 352 (375)
T 4evq_A 345 FYLRELKG 352 (375)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 88999974
No 20
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=98.03 E-value=1.6e-05 Score=61.07 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=57.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEEC-CCCCccc
Q psy13446 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFT-ADGVLKA 98 (121)
Q Consensus 20 ~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd-~~Gd~~~ 98 (121)
......|+|++++|+||+..- + ..++..|.++|++++|+|.+|. |.|| ++|++ .
T Consensus 280 ~~~~~~yda~~~~~~al~~~g-------------------~---~~~~~~l~~al~~~~~~g~~G~--i~f~~~~~~~-~ 334 (368)
T 4eyg_A 280 FMAVGGYDGIHLVFEALKKTG-------------------G---KADGDSLIAAMKGMKWESPRGP--ISIDPETRDI-V 334 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-------------------T---CCSHHHHHHHHTTCEEEETTEE--EEECTTTCCE-E
T ss_pred hHHHHHHHHHHHHHHHHHHhC-------------------C---CCCHHHHHHHHHcCCcccCCCC--eEECcccCCc-c
Confidence 346678999999999998431 0 1577899999999999999995 9999 78988 5
Q ss_pred ceeEEEEeeecCCCCceEEec
Q psy13446 99 AELKIMNLRPNLGSQLKWEES 119 (121)
Q Consensus 99 a~YdIvN~q~~~~g~~~w~~V 119 (121)
..+.|+.|++. +|.+..+.+
T Consensus 335 ~~~~i~~~~~~-~G~~~~v~~ 354 (368)
T 4eyg_A 335 QNIYIRKVEKV-DGELYNIEF 354 (368)
T ss_dssp EEEEEEEEEEE-TTEEEEEEE
T ss_pred cceEEEEEEec-CCeEEEEEe
Confidence 66779999865 455554444
No 21
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=97.75 E-value=4.2e-05 Score=60.43 Aligned_cols=70 Identities=13% Similarity=0.009 Sum_probs=53.2
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcc---
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLK--- 97 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~--- 97 (121)
+...-|||++++++|++.... |...+ .|.++..|.++|++++|+|.+|. |.||++|+..
T Consensus 304 ~a~~~Yda~~~~~~a~~~a~~--------------~~~~g--~~~~~~~l~~al~~~~~~g~~G~--i~f~~~g~~~~~~ 365 (419)
T 3h5l_A 304 SGCQTYSALYAYSIAAALAGG--------------PGAPY--DDVQNKAVADRLRSLIFRGPVGT--MRFHADTQSAWSY 365 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS--------------CCCTT--CHHHHHHHHHHHHHCEEEETTEE--EEBCTTTCBBCEE
T ss_pred hhHHHHHHHHHHHHHHHHhcC--------------CccCC--CccCHHHHHHHHHhCCcccCceE--EEECCCCCccccc
Confidence 566789999999999973321 11222 25789999999999999999996 9999999952
Q ss_pred ---------cceeEEEEeee
Q psy13446 98 ---------AAELKIMNLRP 108 (121)
Q Consensus 98 ---------~a~YdIvN~q~ 108 (121)
...+.|+.||.
T Consensus 366 ~~~~~~~~~~~~~~i~q~q~ 385 (419)
T 3h5l_A 366 PTETNDPSLGMPHIFSQIFD 385 (419)
T ss_dssp TTTCSCTTSSEECEEEECCC
T ss_pred cCccCCccccCCceEEEeeC
Confidence 12356889984
No 22
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=97.72 E-value=9e-05 Score=57.08 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=50.7
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcce-eeccCCCcceEECCCCCcccc
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVS-VEGDTGKPNVEFTADGVLKAA 99 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~-f~g~~G~~~V~Fd~~Gd~~~a 99 (121)
+...-|||+++++.||+.. + . .++..|.++|++++ |+|.+|. |.||++|++..
T Consensus 289 ~~~~~yda~~~~~~al~~a--------------------g-~--~~~~~~~~~l~~~~~~~g~~G~--i~f~~~g~~~~- 342 (366)
T 3td9_A 289 LNALGYDAYMVLLDAIERA--------------------G-S--FDREKIAEEIRKTRNFNGASGI--INIDENGDAIK- 342 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------------T-S--CCHHHHHHHHTTCCSEEETTEE--ECBCTTSCBCC-
T ss_pred hHHHHHHHHHHHHHHHHHh--------------------C-C--CCHHHHHHHHHhCCCCccccee--eEECCCCCccC-
Confidence 3456899999999999843 1 1 56789999999998 9999996 99999999954
Q ss_pred eeEEEEee
Q psy13446 100 ELKIMNLR 107 (121)
Q Consensus 100 ~YdIvN~q 107 (121)
.+.|+.|+
T Consensus 343 ~~~i~~~~ 350 (366)
T 3td9_A 343 SVVVNIVK 350 (366)
T ss_dssp CEEEEEEE
T ss_pred ceEEEEEE
Confidence 48898887
No 23
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=97.71 E-value=7.8e-05 Score=57.14 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=51.6
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhH-HHHHHhcc-eeeccCCCcceEECCCCCcc
Q psy13446 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDR-FYRYLRNV-SVEGDTGKPNVEFTADGVLK 97 (121)
Q Consensus 20 ~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~-l~~yLrnv-~f~g~~G~~~V~Fd~~Gd~~ 97 (121)
.+...-|||++++|.||+.. + . .++.. |.++|+++ +|+|.+|. |.||++|++.
T Consensus 277 ~~~~~~yda~~~~~~al~~a-------g-------------~---~~~~~~~~~~l~~~~~~~g~~G~--~~f~~~g~~~ 331 (358)
T 3hut_A 277 LFAAHGYDAVGIMLAAVGRA-------G-------------P---EVTRESLRDALAATDRYAGVTGI--TRFDPETRET 331 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------C-------------T---TCCHHHHHHHHHTCCSEEETTEE--EEECTTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHh-------C-------------C---CChHHHHHHHHHhcCCCcCCcee--eEECCCCCcC
Confidence 34567899999999999843 1 0 23456 99999999 99999995 9999999997
Q ss_pred cceeEEEEee
Q psy13446 98 AAELKIMNLR 107 (121)
Q Consensus 98 ~a~YdIvN~q 107 (121)
...|.|+.|+
T Consensus 332 ~~~~~i~~~~ 341 (358)
T 3hut_A 332 TKILTRLVVR 341 (358)
T ss_dssp EECCEEEEEE
T ss_pred CCceEEEEEE
Confidence 7788899997
No 24
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=97.66 E-value=0.00011 Score=57.18 Aligned_cols=71 Identities=17% Similarity=0.318 Sum_probs=56.2
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
.....|||+++++.||+.. + + .++..|.++|++++|++..|.. +.||+||++ ...
T Consensus 282 ~~~~~Yda~~~~~~Al~~a--------------------g-~--~~~~~v~~aL~~~~~~~~~G~~-~~f~~~g~~-~~~ 336 (379)
T 3n0w_A 282 NQAGGYSAALQYLKAVNAI--------------------G-S--KDPQKVFAYLKTIKFDDAVTRH-GTLRPGGRL-VRD 336 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------------T-C--CCHHHHHHHHTTCCBCSSSCCS-BEECTTSBE-ECC
T ss_pred HHHHHHHHHHHHHHHHHHh--------------------C-C--CCHHHHHHHHhcCCccccCCCc-eeECCCCCc-ccc
Confidence 4567899999999999843 1 1 5678999999999999998875 999999999 466
Q ss_pred eEEEEeeecCCCCceE
Q psy13446 101 LKIMNLRPNLGSQLKW 116 (121)
Q Consensus 101 YdIvN~q~~~~g~~~w 116 (121)
+.|+.++.+..+...|
T Consensus 337 ~~i~~~~~~~~~~~~~ 352 (379)
T 3n0w_A 337 MYLVRAKKPEDQKGDW 352 (379)
T ss_dssp EEEEEECCGGGCCSTT
T ss_pred eEEEEEEchhhccCcc
Confidence 7799998765444433
No 25
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=97.63 E-value=0.00013 Score=56.58 Aligned_cols=70 Identities=19% Similarity=0.329 Sum_probs=54.8
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccce
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAE 100 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~ 100 (121)
....-|||+++++.||+.. + + .++..|.++|++++|+|.+|. +.||+||++.. .
T Consensus 279 ~a~~~Yda~~~~~~Al~~a--------------------g-~--~~~~~l~~aL~~~~~~~~~G~--~~f~~~g~~~~-~ 332 (375)
T 3i09_A 279 LQAADYSSVTTYLKAVQAA--------------------G-S--TDSDKVMAQLKKMKIDDFYAK--GYIRTDGSMIH-D 332 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------------T-S--CCHHHHHHHHTTSCEESSSCE--EEECTTSBEEC-C
T ss_pred HHHHHHHHHHHHHHHHHHh--------------------C-C--CCHHHHHHHHhCCCccCCCCc--eEECCCCCeee-e
Confidence 3457899999999999843 1 1 467899999999999999996 99999999955 4
Q ss_pred eEEEEeeecCCCCceE
Q psy13446 101 LKIMNLRPNLGSQLKW 116 (121)
Q Consensus 101 YdIvN~q~~~~g~~~w 116 (121)
+.|+.++.+..+...|
T Consensus 333 ~~i~~v~~~~~~~~~~ 348 (375)
T 3i09_A 333 MYLMEVKKPSESKEPW 348 (375)
T ss_dssp EEEEEECCGGGCCSTT
T ss_pred eEEEEEeccccccccc
Confidence 5588888655444433
No 26
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=97.18 E-value=0.0017 Score=50.41 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=52.3
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECC-CCCcccce
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTA-DGVLKAAE 100 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~-~Gd~~~a~ 100 (121)
...-|+|+++++.||+.. + + .++..|.++|++++|+|.+|. |.||+ +|++ ...
T Consensus 285 a~~~Yda~~~l~~Al~~a--------------------g-~--~~~~~v~~aL~~~~~~g~~G~--i~f~~~~~~~-~~~ 338 (374)
T 3n0x_A 285 TAGGFSAAMAVVTAVQKA--------------------K-S--TDTEKLIAAMEGMEFDTPKGK--MVFRKEDHQA-LQS 338 (374)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------------T-S--CCHHHHHHHHTTCEEEETTEE--EEECTTTCBE-ECC
T ss_pred HHHHHHHHHHHHHHHHHh--------------------C-C--CCHHHHHHHHhcCCccCCCCC--EEECcccCcc-ccc
Confidence 456799999999999832 1 1 567899999999999999995 99995 5677 556
Q ss_pred eEEEEeeecCCCCce
Q psy13446 101 LKIMNLRPNLGSQLK 115 (121)
Q Consensus 101 YdIvN~q~~~~g~~~ 115 (121)
+.|+.+++...+...
T Consensus 339 ~~i~~~~~~~~~~~~ 353 (374)
T 3n0x_A 339 MYHFKVKVDPAVAWA 353 (374)
T ss_dssp EEEEEEECCTTSSSC
T ss_pred eEEEEEEeCCCcccc
Confidence 778888876554433
No 27
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=97.14 E-value=0.0013 Score=51.16 Aligned_cols=62 Identities=8% Similarity=0.097 Sum_probs=48.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCcccc
Q psy13446 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAA 99 (121)
Q Consensus 20 ~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a 99 (121)
......|+|++++|+||+.. + . .++..|.++|++++|+|.+|. |.||++|.....
T Consensus 284 ~~~~~~yda~~~~~~Al~~a-------g-------------~---~~~~~l~~al~~~~~~g~~G~--i~f~~~~~~~~~ 338 (385)
T 1pea_A 284 AWAEAAYWQTLLLGRAAQAA-------G-------------N---WRVEDVQRHLYDIDIDAPQGP--VRVERQNNHSRL 338 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------T-------------S---CCHHHHHHHHTTCCEEETTEE--EEECTTTSCEEB
T ss_pred hHHHHHHHHHHHHHHHHHHh-------C-------------C---CCHHHHHHHHhhCcccCCCCC--eEEcCCCCcccc
Confidence 35668899999999999843 1 0 356799999999999999995 999995543356
Q ss_pred eeEEEEe
Q psy13446 100 ELKIMNL 106 (121)
Q Consensus 100 ~YdIvN~ 106 (121)
.+.|+.|
T Consensus 339 ~~~i~~~ 345 (385)
T 1pea_A 339 SSRIAEI 345 (385)
T ss_dssp CCEEEEE
T ss_pred ceEEEEE
Confidence 6778777
No 28
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=97.11 E-value=0.0014 Score=50.99 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=55.3
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcce----ee-------ccCCCcceEE
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVS----VE-------GDTGKPNVEF 90 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~----f~-------g~~G~~~V~F 90 (121)
...-|||+++++.||+..-.. ..+.++..|.++|++++ |+ |.+|. |.|
T Consensus 287 ~~~~yda~~~~~~al~~ag~~-------------------~~~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~--i~f 345 (392)
T 3lkb_A 287 YTNGMLAAAIAVEAIRRAQER-------------------FKRITNETVYQAIVGMNGPNAFKPGFAVSTKQGVE--IDF 345 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------------HSSCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCS--BCC
T ss_pred HHHHHHHHHHHHHHHHHhhcc-------------------CCCCCHHHHHHHHHhcCCCcCccccccccccccee--eEe
Confidence 456799999999999844200 11478889999999998 98 88996 999
Q ss_pred CCCCCcccceeEEEEeeecCCCCceEEecc
Q psy13446 91 TADGVLKAAELKIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 91 d~~Gd~~~a~YdIvN~q~~~~g~~~w~~VG 120 (121)
|++|+.....+.|+.|+. ..|+.||
T Consensus 346 ~~~~~~~~~~~~i~~~~~-----g~~~~v~ 370 (392)
T 3lkb_A 346 TKSEHTGAEGLRILEAKG-----GRFVPVT 370 (392)
T ss_dssp CSSCCEEECCBEEEEEET-----TEEEECS
T ss_pred CCCCcCCcccEEEEEEeC-----CEEEEec
Confidence 999987666788888863 3455554
No 29
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=97.09 E-value=0.0016 Score=50.79 Aligned_cols=74 Identities=9% Similarity=0.105 Sum_probs=53.1
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECCCCCccccee
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAEL 101 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~a~Y 101 (121)
...-|+|+++++.||+.- . +. .++..+.+.|++++|+|.+|. |+||++|......+
T Consensus 285 a~~~Yda~~~l~~Ai~~~------a-------------g~---~d~~~v~~al~~~~~~~~~G~--i~fd~~~~~~~~~~ 340 (371)
T 4f06_A 285 SVAAYDGARLIYKMIEAT------S-------------GK---SDPDKAIAAVKGMKWVSPRGE--VSIDPETRHITQNV 340 (371)
T ss_dssp HHHHHHHHHHHHHHHHHT------T-------------TS---CCHHHHHHHHTTCEEEETTEE--EEECTTTCBEEEEE
T ss_pred HHHHHHHHHHHHHHHHHh------c-------------CC---CCHHHHHHHHhCCCeeCCcEE--EEEcCCCCcccCCE
Confidence 445689999999998721 1 11 567899999999999999995 99998776534334
Q ss_pred EEEEeeecCCCCceEEecc
Q psy13446 102 KIMNLRPNLGSQLKWEEST 120 (121)
Q Consensus 102 dIvN~q~~~~g~~~w~~VG 120 (121)
-|+-++. .+|.++|+++.
T Consensus 341 ~i~~v~~-~dGk~v~~~~~ 358 (371)
T 4f06_A 341 YLREVEK-VDGKLINRELE 358 (371)
T ss_dssp EEEEEEE-ETTEEEEEEEE
T ss_pred EEEEEEe-cCCEEEEEEEE
Confidence 3554543 35788887653
No 30
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=96.84 E-value=0.0029 Score=47.83 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=52.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcc-eeeccCCCcceEECCC---CC
Q psy13446 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNV-SVEGDTGKPNVEFTAD---GV 95 (121)
Q Consensus 20 ~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv-~f~g~~G~~~V~Fd~~---Gd 95 (121)
.+...-|||++++|.||+..... ...+ .|.++..|.+.|+++ +|+|.+|. +.||++ |+
T Consensus 282 ~~~~~~yda~~~~~~al~~a~~~--------------~~~g--~~~~~~~~~~al~~~~~~~g~~G~--~~f~~~~~~g~ 343 (362)
T 3snr_A 282 QFAGHSYDAFKVLERVVPVALKK--------------AKPG--TQEFREALREAFLTEKDIAASQGV--YNFTETDRYGL 343 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------CCTT--SHHHHHHHHHHHHHCCCEECSSCE--ECCCSSCSSCC
T ss_pred chhHhHHHHHHHHHHHHHHhhcc--------------ccCC--CcchHHHHHHHHHhcCCcccceee--EEeCCCCCCCC
Confidence 34567899999999999865311 0111 257789999999999 89999996 999987 55
Q ss_pred cccceeEEEEeee
Q psy13446 96 LKAAELKIMNLRP 108 (121)
Q Consensus 96 ~~~a~YdIvN~q~ 108 (121)
. ...+.|+.|+.
T Consensus 344 ~-~~~~~i~~~~~ 355 (362)
T 3snr_A 344 D-DRSRILLTVKN 355 (362)
T ss_dssp C-GGGCEEEEEET
T ss_pred C-CCCeEEEEEEC
Confidence 5 45577888863
No 31
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=96.61 E-value=0.0068 Score=47.03 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=45.4
Q ss_pred HHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceeeccCCCcceEECC-CCCcccce
Q psy13446 22 VQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTA-DGVLKAAE 100 (121)
Q Consensus 22 ~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~g~~G~~~V~Fd~-~Gd~~~a~ 100 (121)
...-|+|++++|.||+.. +. .++..|.++|++++|+|.+|. |.||+ ++.....
T Consensus 286 ~~~~Yda~~~~a~Al~~a--------------------g~---~~~~~v~~al~~~~~~g~~G~--i~f~~~~~~~~~~- 339 (387)
T 3i45_A 286 SLVGYNTLTAMAVAFEKA--------------------GG---TESETLVETLKDMAFSTPMGP--LSFRASDHQSTMG- 339 (387)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------------TS---CCHHHHHHHTTTCEEEETTEE--EEBCTTTCBBCCC-
T ss_pred HHHHHHHHHHHHHHHHHh--------------------CC---CCHHHHHHHHhcCCCcCCCCC--eEEcCCCCccccc-
Confidence 346899999999999843 11 567899999999999999996 99997 5555333
Q ss_pred eEEEEee
Q psy13446 101 LKIMNLR 107 (121)
Q Consensus 101 YdIvN~q 107 (121)
+.|+-++
T Consensus 340 ~~i~~~~ 346 (387)
T 3i45_A 340 AWVGRTA 346 (387)
T ss_dssp EEEEEEE
T ss_pred eeEEEEE
Confidence 4455444
No 32
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=96.55 E-value=0.0034 Score=48.02 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=44.8
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcc-eeeccCCCcceEECCCCCcccc
Q psy13446 21 LVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNV-SVEGDTGKPNVEFTADGVLKAA 99 (121)
Q Consensus 21 ~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv-~f~g~~G~~~V~Fd~~Gd~~~a 99 (121)
+...-|||++++|.|++. + .++..+.+.|+++ +|+|.+|. |.||+||++..+
T Consensus 282 ~a~~~Yda~~~la~Ai~~-----------------a--------~~~~~v~~aL~~~~~~~g~~G~--i~f~~~g~~~~~ 334 (353)
T 4gnr_A 282 FAALAYDSVHLVANAAKG-----------------A--------KNSGEIKDNLAXTKDFEGVTGQ--TSFDADHNTVKT 334 (353)
T ss_dssp HHHHHHHHHHHHHHHHTT-----------------C--------SSHHHHHHHHHTCCCEEETTEE--ECCCTTSCCCCC
T ss_pred hHHHHHHHHHHHHHHHhc-----------------C--------CCHHHHHHHHHhcCCCccCcee--EEECCCcCCcCC
Confidence 345678999999999861 1 1345788999988 59999995 999999999665
Q ss_pred eeEEEEee
Q psy13446 100 ELKIMNLR 107 (121)
Q Consensus 100 ~YdIvN~q 107 (121)
.| |+-++
T Consensus 335 ~~-i~~v~ 341 (353)
T 4gnr_A 335 AY-MMTMN 341 (353)
T ss_dssp EE-EEEEE
T ss_pred eE-EEEEE
Confidence 55 66665
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=96.24 E-value=0.0091 Score=45.62 Aligned_cols=70 Identities=9% Similarity=0.092 Sum_probs=51.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcc-eeeccCCCcceEECCC---CC
Q psy13446 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNV-SVEGDTGKPNVEFTAD---GV 95 (121)
Q Consensus 20 ~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv-~f~g~~G~~~V~Fd~~---Gd 95 (121)
.+...-|||+++++.||+..... + ..+ .|.++..|.++|+++ +|+|.+|. |.|+++ |+
T Consensus 306 ~~~~~~yda~~~~~~al~~a~~~----~----------~~g--~~~~~~~~~~al~~~~~~~g~~G~--~~f~~~~~~g~ 367 (386)
T 3sg0_A 306 IFGVHLWDSMTLVENAIPAALKA----A----------KPG--TPEFRAAIRDQIEKSKDLALNNGL--SNMTPDNHNGY 367 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----C----------CTT--SHHHHHHHHHHHTTCCSEEETTEE--ECCCSSCSSCC
T ss_pred hhHHHHHHHHHHHHHHHHHhhhc----c----------CCC--CcchHHHHHHHHHhccCcccccee--EEECCCcCCCC
Confidence 34567899999999999866411 0 111 146789999999999 89999995 999876 44
Q ss_pred cccceeEEEEeee
Q psy13446 96 LKAAELKIMNLRP 108 (121)
Q Consensus 96 ~~~a~YdIvN~q~ 108 (121)
. ...+.|+.|+.
T Consensus 368 ~-~~~~~i~~~~~ 379 (386)
T 3sg0_A 368 D-ERSAFLIEIRD 379 (386)
T ss_dssp C-GGGCEEEEEET
T ss_pred C-CCceEEEEEEC
Confidence 4 34567888863
No 34
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=96.08 E-value=0.0086 Score=46.59 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=50.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcceee--ccCC-CcceEECCCCCc
Q psy13446 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVE--GDTG-KPNVEFTADGVL 96 (121)
Q Consensus 20 ~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv~f~--g~~G-~~~V~Fd~~Gd~ 96 (121)
.....-|+|+++++.||+.... .+ ....++..|.+.|++.+|+ |.+| . |.||++|..
T Consensus 288 ~~~~~~yda~~~l~~Al~~a~~-----------------~g-~~~~~~~~v~~aL~~~~~~~~G~~G~~--i~f~~~~~~ 347 (391)
T 3eaf_A 288 LRVVQGFVNVWLLIKAIESVTS-----------------QD-LQERGGEALKEALEANTFDLGGITADT--IDYEPGFHL 347 (391)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCH-----------------HH-HHHHTHHHHHHHHHHCCBCSTTCBSSC--BCCBTTBCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-----------------cC-CCCCCHHHHHHHHHhCCCCCCCccccc--eeeCCCCCC
Confidence 3466789999999999973210 01 0026788999999999998 8999 6 999987655
Q ss_pred ccceeEEEEee
Q psy13446 97 KAAELKIMNLR 107 (121)
Q Consensus 97 ~~a~YdIvN~q 107 (121)
....+.|+.|+
T Consensus 348 ~~~~~~i~~~~ 358 (391)
T 3eaf_A 348 AYRKVFIIKLG 358 (391)
T ss_dssp CCCCEEEEEEC
T ss_pred cceEEEEEEEe
Confidence 46678888884
No 35
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=95.53 E-value=0.049 Score=41.62 Aligned_cols=65 Identities=15% Similarity=0.051 Sum_probs=47.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCccCchhHHHHHHhcc-eeec-cCCCcceEECCCCCcc
Q psy13446 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNV-SVEG-DTGKPNVEFTADGVLK 97 (121)
Q Consensus 20 ~~~~~I~~AVyv~A~al~~~~~~~~~~~~~~~~~~~C~~~~~~~w~~g~~l~~yLrnv-~f~g-~~G~~~V~Fd~~Gd~~ 97 (121)
.....-|+|+++++.||+.. + . +.++..|.+.|+++ .|+| .+|. |.||+++...
T Consensus 284 ~~a~~~yda~~~~~~al~~a-------g-------------~--~~~~~~v~~aL~~~~~~~~~~~g~--i~f~~~~~~~ 339 (364)
T 3lop_A 284 FRAVEGFVAAKVLAEAIRRA-------G-------------P--KPTREQVRHALTELRDYDVGGGFT--VDFTDRSRPG 339 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------C-------------S--SCCHHHHHHHHHTCEEEESSTTCE--EECSSTTSCS
T ss_pred hHHHHHHHHHHHHHHHHHHh-------C-------------C--CCCHHHHHHHHHhcCCccCCCCee--eecCCCCcCC
Confidence 34567899999999999833 1 0 26788999999999 7999 8884 9999987653
Q ss_pred cceeEEEEeee
Q psy13446 98 AAELKIMNLRP 108 (121)
Q Consensus 98 ~a~YdIvN~q~ 108 (121)
.....|.=++.
T Consensus 340 ~~~~~i~~~~~ 350 (364)
T 3lop_A 340 SHYIELGVVGP 350 (364)
T ss_dssp CCCCEEEEECT
T ss_pred cceEEEEEEcC
Confidence 33333444543
No 36
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=75.46 E-value=2.3 Score=32.19 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=21.4
Q ss_pred cceeeccCCCcceEECCCCCcccceeEEEEee
Q psy13446 76 NVSVEGDTGKPNVEFTADGVLKAAELKIMNLR 107 (121)
Q Consensus 76 nv~f~g~~G~~~V~Fd~~Gd~~~a~YdIvN~q 107 (121)
...|.|.||. ++||+||+. .-.+.++-++
T Consensus 284 ~~~f~G~tG~--i~fd~~G~~-~r~l~~~~~~ 312 (327)
T 3ckm_A 284 GYRLSGLTGI--LSADTNCNV-ERDMTWYQYQ 312 (327)
T ss_dssp TCCEEETTEE--EEECTTCBE-EEECEEEEEE
T ss_pred CCCceeceEE--EEECCCCCC-ccccEEEEEE
Confidence 3468999996 999999997 4445455454
No 37
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=44.82 E-value=13 Score=28.79 Aligned_cols=28 Identities=11% Similarity=0.188 Sum_probs=21.3
Q ss_pred ceeeccCCCcceEECCCCCcccceeEEEEee
Q psy13446 77 VSVEGDTGKPNVEFTADGVLKAAELKIMNLR 107 (121)
Q Consensus 77 v~f~g~~G~~~V~Fd~~Gd~~~a~YdIvN~q 107 (121)
.+|.|.||. ++||++|+. .-.+.++-++
T Consensus 283 ~~~~G~tG~--l~~~~~g~~-~R~l~~~~~~ 310 (325)
T 2h4a_A 283 YRLSGLTGI--LSADTNCNV-ERDMTWYQYQ 310 (325)
T ss_dssp CCEEETTEE--EEECTTCBE-EEECEEEEEE
T ss_pred CeeccCcee--EEECCCCeE-EEeechhhcc
Confidence 479999996 999999999 4445555444
No 38
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=26.50 E-value=57 Score=19.39 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=20.0
Q ss_pred cchhHHHhHHHHHHHHHHHHHHHhc
Q psy13446 17 SSASLVQGISTAIKVYAYGVEDYMS 41 (121)
Q Consensus 17 s~~~~~~~I~~AVyv~A~al~~~~~ 41 (121)
++++-+..+.+++.++|-|+.++.+
T Consensus 15 ~TNeAV~~L~~g~~~la~Av~~iQ~ 39 (51)
T 3kpe_A 15 STNKAVVSLSNGVSVLTSKVLDLKN 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566688999999999999976643
No 39
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=22.86 E-value=54 Score=22.75 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=25.0
Q ss_pred HHHHHHhcceeeccCCCcceEECCCCCccc-ceeEEEEeee
Q psy13446 69 RFYRYLRNVSVEGDTGKPNVEFTADGVLKA-AELKIMNLRP 108 (121)
Q Consensus 69 ~l~~yLrnv~f~g~~G~~~V~Fd~~Gd~~~-a~YdIvN~q~ 108 (121)
.+-+.|+... +-|=. ++|-.+|.+.+ +.|.|.+|=+
T Consensus 49 TiQd~I~aL~---elgI~-~~FvQ~G~R~n~GyY~I~dWG~ 85 (117)
T 3ke2_A 49 TLQDAIASFA---DIGIE-VEFVQDGERHNAGYYRIRTWGP 85 (117)
T ss_dssp HHHHHHHTGG---GGTCE-EEEECCTTCCSCCEEEEEECTT
T ss_pred HHHHHHHHhh---hCCeE-EEEEeccccCCCccEEEeecCc
Confidence 4445555443 34443 99999999955 6999999954
No 40
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=21.96 E-value=59 Score=20.19 Aligned_cols=15 Identities=7% Similarity=0.157 Sum_probs=13.3
Q ss_pred HhHHHHHHHHHHHHH
Q psy13446 23 QGISTAIKVYAYGVE 37 (121)
Q Consensus 23 ~~I~~AVyv~A~al~ 37 (121)
.-|.||+|++..||+
T Consensus 16 ~AieDaiy~L~~aL~ 30 (65)
T 2f6m_A 16 YALTDTIEALSRMLH 30 (65)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 458999999999997
No 41
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=21.83 E-value=15 Score=22.78 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=11.2
Q ss_pred HHHHhcceeeccCCC
Q psy13446 71 YRYLRNVSVEGDTGK 85 (121)
Q Consensus 71 ~~yLrnv~f~g~~G~ 85 (121)
|+|||||-|+=..|+
T Consensus 7 ~EYLrNVl~~ym~g~ 21 (60)
T 1upt_B 7 FEYLRKVLFEYMMGR 21 (60)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcc
Confidence 689999988655554
Done!