BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy13446
MKVEVREKKKGVHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVG
ESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKWEEST
L

High Scoring Gene Products

Symbol, full name Information P value
Nmdar2
NMDA receptor 2 		protein from Drosophila melanogaster 2.8e-31

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy13446
        (121 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0053513 - symbol:Nmdar2 "NMDA receptor 2" species:...   351  2.8e-31   2


>FB|FBgn0053513 [details] [associations]
            symbol:Nmdar2 "NMDA receptor 2" species:7227 "Drosophila
            melanogaster" [GO:0004972 "N-methyl-D-aspartate selective glutamate
            receptor activity" evidence=ISS;IDA] [GO:0006811 "ion transport"
            evidence=IEA] [GO:0030288 "outer membrane-bounded periplasmic
            space" evidence=IEA] [GO:0005234 "extracellular-glutamate-gated ion
            channel activity" evidence=IEA] [GO:0035235 "ionotropic glutamate
            receptor signaling pathway" evidence=IDA] [GO:0008328 "ionotropic
            glutamate receptor complex" evidence=IPI] [GO:0016021 "integral to
            membrane" evidence=IDA] [GO:0072375 "medium-term memory"
            evidence=IMP] [GO:0007616 "long-term memory" evidence=IGI;IMP]
            [GO:0050975 "sensory perception of touch" evidence=IMP]
            InterPro:IPR001320 InterPro:IPR001508 InterPro:IPR001638
            InterPro:IPR019594 Pfam:PF00060 Pfam:PF00497 PRINTS:PR00177
            SMART:SM00079 SMART:SM00918 Pfam:PF01094 GO:GO:0016021
            GO:GO:0005886 GO:GO:0030054 GO:GO:0045211 EMBL:AE014298
            GO:GO:0007616 GO:GO:0030288 GO:GO:0072375 InterPro:IPR001828
            GO:GO:0005234 GO:GO:0004972 GeneTree:ENSGT00540000070221 KO:K05210
            UniGene:Dm.14391 GeneID:31107 KEGG:dme:Dmel_CG33513 CTD:31107
            FlyBase:FBgn0053513 GenomeRNAi:31107 NextBio:771978 EMBL:AY616148
            RefSeq:NP_001014714.1 SMR:Q9W581 STRING:Q9W581
            EnsemblMetazoa:FBtr0070288 UCSC:CG33513-RC InParanoid:Q9W581
            OMA:VAEMQEH Uniprot:Q9W581
        Length = 1083

 Score = 351 (128.6 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
 Identities = 67/110 (60%), Positives = 86/110 (78%)

Query:    11 GVHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQ-LSCDGVGESRWKTGDR 69
             GVHFDTSSA+L+  IS AIK+Y+YGVE Y++D +N +  L TQ LSC+  G  RW  G+ 
Sbjct:   360 GVHFDTSSAALMNEISNAIKIYSYGVEAYLTDPANRDRRLTTQSLSCEDEGRGRWDNGEI 419

Query:    70 FYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQ-LKWEE 118
             F++YLRNVS+EGD  KPN+EFTADG L++AELKIMNLRP+  ++ L WEE
Sbjct:   420 FFKYLRNVSIEGDLNKPNIEFTADGDLRSAELKIMNLRPSANNKNLVWEE 469

 Score = 32 (16.3 bits), Expect = 2.8e-31, Sum P(2) = 2.8e-31
 Identities = 5/11 (45%), Positives = 8/11 (72%)

Query:     8 KKKGVHFDTSS 18
             ++K +HFD  S
Sbjct:   145 EQKNIHFDMMS 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.129   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      121       121   0.00091  102 3  11 23  0.43    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  569 (61 KB)
  Total size of DFA:  124 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.90u 0.06s 11.96t   Elapsed:  00:00:19
  Total cpu time:  11.90u 0.06s 11.96t   Elapsed:  00:00:19
  Start:  Thu Aug 15 10:51:45 2013   End:  Thu Aug 15 10:52:04 2013

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