RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13446
(121 letters)
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel,
allosteric modulation, phenylethanolamine,
N-glycosylation, extracellular; HET: NAG BMA MAN FUC
QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A*
3jpy_A*
Length = 364
Score = 61.8 bits (149), Expect = 1e-12
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 11 GVHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRF 70
V +D L + I + D +S+ S + SC E R +
Sbjct: 249 SVSYDEWDYGLPARVRDGIAIITTAASDMLSEHSFIP---EPKSSCYNTHEKRIYQSNML 305
Query: 71 YRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQL--KWEESTL 121
RYL NV+ EG + F+ DG +L I+ L + KW++ +L
Sbjct: 306 NRYLINVTFEGRD----LSFSEDGYQMHPKLVIILLNKERKWERVGKWKDKSL 354
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL
membrane, endoplasmic reticulum, glycoprotein, ION TRA
ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus}
PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Length = 376
Score = 58.6 bits (141), Expect = 2e-11
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 28 AIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPN 87
A++V + + N C W G R L+ V VEG +G N
Sbjct: 279 AVQVMTEAFRNLRKQRIEISRRGNA-GDCLANPAVPWGQGVEIERALKQVQVEGLSG--N 335
Query: 88 VEFTADGVLKAAELKIMNLRPN 109
++F +G + IM L+ N
Sbjct: 336 IKFDQNGKRINYTINIMELKTN 357
>3o21_A Glutamate receptor 3; periplasmatic binding protein,
oligomerization, membrane, TR protein; HET: NAG; 2.20A
{Rattus norvegicus} PDB: 3p3w_A
Length = 389
Score = 56.0 bits (134), Expect = 2e-10
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 28 AIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPN 87
AI V A + + + C W G R L+ V V+G TG N
Sbjct: 285 AILVIAEAFRYLRRQRVDVSRRGSA-GDCLANPAVPWSQGIDIERALKMVQVQGMTG--N 341
Query: 88 VEFTADGVLKAAELKIMNLRPN 109
++F G + + ++ +
Sbjct: 342 IQFDTYGRRTNYTIDVYEMKVS 363
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 54.8 bits (131), Expect = 4e-10
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 28 AIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPN 87
+KV A + + + N C W G R L+ V EG TG N
Sbjct: 282 GVKVMAEAFQSLRRQRIDISRRGNA-GDCLANPAVPWGQGIDIQRALQQVRFEGLTG--N 338
Query: 88 VEFTADGVLKAAELKIMNLRPN 109
V+F G L ++ ++ +
Sbjct: 339 VQFNEKGRRTNYTLHVIEMKHD 360
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION
channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus}
PDB: 3om1_A* 3qlu_A* 3qlv_A
Length = 393
Score = 52.1 bits (124), Expect = 4e-09
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 28 AIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPN 87
A+ V V + L +C + W G YLR V +G TG
Sbjct: 291 AVHVVVSAVRELNRSQEIGVKPL----ACTS--ANIWPHGTSLMNYLRMVEYDGLTG--R 342
Query: 88 VEFTADGVLKAAELKIMNLRPN 109
VEF + G L+I+
Sbjct: 343 VEFNSKGQRTNYTLRILEKSRQ 364
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane,
glycoprotein, transport, membrane, postsynaptic cell
membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus
norvegicus}
Length = 823
Score = 51.3 bits (122), Expect = 8e-09
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 28 AIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPN 87
A++V + + N C W G R L+ V VEG +G N
Sbjct: 279 AVQVMTEAFRNLRKQRIEISRRGNA-GDCLANPAVPWGQGVEIERALKQVQVEGLSG--N 335
Query: 88 VEFTADGVLKAAELKIMNLRPN 109
++F +G + IM L+ N
Sbjct: 336 IKFDQNGKRINYTINIMELKTN 357
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION
channel, NMDA receptor, allosteri modulation,
phenylethanolamine, polyamine; HET: NAG BMA; 2.00A
{Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Length = 384
Score = 50.1 bits (119), Expect = 2e-08
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 27 TAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVS-VEGDTGK 85
A+ V A + + + + C G + WKTG F R L + +G TG+
Sbjct: 283 DAVAVVAQAIHELFEMEN----ITDPPRGCVG-NTNIWKTGPLFKRVLMSSKYPDGVTGR 337
Query: 86 PNVEFTADGVLKAAELKIMNLRPN 109
+EF DG K A+ IMNL+
Sbjct: 338 --IEFNEDGDRKFAQYSIMNLQNR 359
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane,
glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus
norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Length = 395
Score = 45.1 bits (106), Expect = 1e-06
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 28 AIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPN 87
A+ V + V+ + + ++ L C+ W+ G RF ++ EG TG
Sbjct: 295 AVHVVSVAVQQFPQMTVSS-------LQCNR--HKPWRFGTRFMSLIKEAHWEGLTG--R 343
Query: 88 VEFT-ADGVLKAAELKIMNLRPN 109
+ F +G+ +L +++L+
Sbjct: 344 ITFNKTNGLRTDFDLDVISLKEE 366
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.0 bits (87), Expect = 2e-04
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 19/48 (39%)
Query: 7 EKKKGVHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQL 54
EK+ ++ + ++K+YA DS+ A L++ +
Sbjct: 18 EKQA-----------LKKLQASLKLYA-------DDSAPA-LAIKATM 46
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
module, G-protein coupled receptor, signaling; 2.38A
{Homo sapiens} PDB: 4f12_A*
Length = 433
Score = 33.7 bits (77), Expect = 0.008
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 8/83 (9%)
Query: 27 TAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKP 86
I V A ++ M ++ Q + + G TG+
Sbjct: 319 DGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRI----ILNAMNETNFFGVTGQ- 373
Query: 87 NVEFTADGVLKAAELKIMNLRPN 109
V F +G +K + +
Sbjct: 374 -VVFR-NGERMGT-IKFTQFQDS 393
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99; 2.80A {Homo
sapiens} PDB: 2e4z_A*
Length = 481
Score = 32.1 bits (73), Expect = 0.030
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 13 HFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYR 72
+ VQ + A+ A+ + D + + C E G + +
Sbjct: 367 DSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCA-----DYRGVCP---EMEQAGGKKLLK 418
Query: 73 YLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKW 116
Y+RNV+ G G P V F +G I + S +
Sbjct: 419 YIRNVNFNGSAGTP-VMFNKNGDA-PGRYDIFQYQTTNTSNPGY 460
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 32.0 bits (72), Expect = 0.034
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 20/89 (22%)
Query: 6 REKKKGVHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWK 65
+K+G++ + V+G AI +Y + + + + K
Sbjct: 299 SVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYS------------------KK 340
Query: 66 TGDRFYRYLRNVSVEGDTGKPNVEFTADG 94
G + + N + EG G V A+G
Sbjct: 341 DGGKIIQQTWNRTFEGIAG--QVSIDANG 367
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 27.9 bits (62), Expect = 0.89
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 20 SLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKTGDRFYRYLRNVSV 79
S + + AI A+G+++ ++ L + + +L S
Sbjct: 381 SKMGFVINAIYAMAHGLQNMHHALCPGHVGLCDAMK----PIDGS----KLLDFLIKSSF 432
Query: 80 EGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKW 116
G +G+ V F G IMNL+ ++ +
Sbjct: 433 IGVSGEE-VWFDEKGDA-PGRYDIMNLQYTEANRYDY 467
>1hyn_P BAND 3 anion transport protein; membrane protein; 2.60A {Homo
sapiens} SCOP: d.112.1.2
Length = 379
Score = 25.1 bits (54), Expect = 8.2
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 54 LSCDGVGES-RWKTGDRFYRYLRNVSVEGDTGKPNV 88
L D + RW R+ + N+ G G+P++
Sbjct: 64 LVMDEKNQELRWMEAARWVQLEENLGENGAWGRPHL 99
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics,
BSGC structure funded by NIH, protein structure
initiative, PSI; 2.80A {Escherichia coli} SCOP:
c.114.1.1
Length = 117
Score = 24.5 bits (53), Expect = 8.5
Identities = 5/45 (11%), Positives = 12/45 (26%)
Query: 71 YRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLK 115
R + + + +D V + N+ L+
Sbjct: 22 LRLAIALREQESNLDLRLFLMSDAVTAGLRGQKPGEGYNIQQMLE 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.129 0.363
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,754,253
Number of extensions: 89112
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 16
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.7 bits)