RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13446
         (121 letters)



>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 477

 Score = 38.8 bits (89), Expect = 6e-05
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 13/110 (11%)

Query: 7   EKKKGVHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVGESRWKT 66
           E  +  +   S    V     AI   A+G+++        ++ L            +   
Sbjct: 363 ESLEENYVQDSKMGFVI---NAIYAMAHGLQNMHHALCPGHVGLCD--------AMKPID 411

Query: 67  GDRFYRYLRNVSVEGDTGKPNVEFTADGVLKAAELKIMNLRPNLGSQLKW 116
           G +   +L   S  G +G+  V F   G        IMNL+    ++  +
Sbjct: 412 GRKLLDFLIKSSFVGVSGEE-VWFDEKGDA-PGRYDIMNLQYTEANRYDY 459


>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
           natriuretic peptide receptor {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 425

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 30  KVYAYGVEDYMSDSSNANLSLNTQLSCDGVGES-----RWKTGDRFYRYLRNVSVEGDTG 84
           K + + VED + +   A+      L    V E+         G+   + + N S +G TG
Sbjct: 303 KKFNFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTG 362

Query: 85  KPNVEFTADGVLKAAELKIMNLRPNLGS 112
              ++   +G     +  + ++ P  G+
Sbjct: 363 --YLKIDRNGDRD-TDFSLWDMDPETGA 387


>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial
           natriuretic peptide receptor {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 401

 Score = 32.0 bits (71), Expect = 0.011
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 20/94 (21%)

Query: 1   MKVEVREKKKGVHFDTSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVG 60
           M+V+   +K+G++ +      V+G   AI +Y   + + +    +               
Sbjct: 292 MEVKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYS--------------- 336

Query: 61  ESRWKTGDRFYRYLRNVSVEGDTGKPNVEFTADG 94
               K G +  +   N + EG  G   V   A+G
Sbjct: 337 ---KKDGGKIIQQTWNRTFEGIAG--QVSIDANG 365


>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 293

 Score = 24.4 bits (53), Expect = 4.6
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 50 LNTQLSCDGVGESRWKTGDRFYRYLRNVSVEGDTGKPNV 88
          L   +  +   E RW    R+ +   N+   G  G+P++
Sbjct: 6  LQELVMDEKNQELRWMEAARWVQLEENLGENGAWGRPHL 44


>d2df7a1 b.121.4.9 (A:11-429) Birnavirus VP2 {Infectious bursal
           disease virus [TaxId: 10995]}
          Length = 419

 Score = 24.0 bits (52), Expect = 7.1
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 16  TSSASLVQGISTAIKVYAYGVEDYMSDSSNANLSLNTQLSCDGVG 60
           T +A   QG  + +   +Y     MS ++N N  +   L  +GV 
Sbjct: 113 TINAVTFQGSLSELTDVSY--NGLMSATANINDKIGNVLVGEGVT 155


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.129    0.363 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 423,536
Number of extensions: 16575
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 7
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.0 bits)