BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13451
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 221 bits (563), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 128/305 (41%), Positives = 182/305 (59%), Gaps = 19/305 (6%)
Query: 1 MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHGR K S ++A+ +R K+K Y + + +F+KR+ E D+ L LTS++L P
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
D +LWN R+EVL H++ + EE LV EL + CL PKSYGTW RC++L +
Sbjct: 61 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
PN+ +ELELC +LE DERNFHCWDYRR+V + VAP +EL ++ I NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
+WHYRS LLP L+P P+ LP ++ + E +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237
Query: 233 ERTSPVQIISAGVLP--SGVTFVTFNQLVDLTS---TSQIKVDSNVL-MSWTSLNGASR- 285
R P ++ + V F++ + + S T + VD L + W + +G +R
Sbjct: 238 -RAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRP 296
Query: 286 SFIWV 290
S +W+
Sbjct: 297 SHVWL 301
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 308 LLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN 367
LLT I L++ L P + L+ F LK +DP+R Y D SK+ +E + A+
Sbjct: 385 LLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442
Query: 368 -QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC----ESLKLTHCS 422
++ +L+ LT + H+ +DLS+N LR L P +A E L+ + +
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-----LRALPPALAALRCLEVLQASDNA 497
Query: 423 LSSLHVFPHLPSLESLDVSHN 443
L ++ +LP L+ L + +N
Sbjct: 498 LENVDGVANLPRLQELLLCNN 518
>pdb|3PZ1|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
Length = 332
Score = 221 bits (563), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 193/368 (52%), Gaps = 52/368 (14%)
Query: 1 MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHGR K S ++A+ +R K+K Y + + +F+KR+ E D+ L LTS++L P
Sbjct: 3 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 62
Query: 57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
D +LWN R+EVL H++ + EE LV EL + CL PKSYGTW RC++L +
Sbjct: 63 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 122
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
PN+ +ELELC +LE DERNFHCWDYRR+V + VAP +EL ++ I NFSNYS
Sbjct: 123 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 181
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
+WHYRS LLP L+P P+ LP ++ + E +V++A FT+P DQSAWFY RWLLG
Sbjct: 182 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 239
Query: 233 ERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRF 292
+ ++ S + V + L S L W
Sbjct: 240 AGSGRCEL----------------------SVEKSTVLQSELESCKELQELEPENKWC-- 275
Query: 293 LLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSES 352
LLT I L++ L P + L+ F LK +DP+R Y D S
Sbjct: 276 ---------------LLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAAYLDDLRS 318
Query: 353 KYKIETFI 360
K+ +E +
Sbjct: 319 KFLLENSV 326
>pdb|3DSS|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|A Chain A, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 221 bits (563), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 193/368 (52%), Gaps = 52/368 (14%)
Query: 1 MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHGR K S ++A+ +R K+K Y + + +F+KR+ E D+ L LTS++L P
Sbjct: 2 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 61
Query: 57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
D +LWN R+EVL H++ + EE LV EL + CL PKSYGTW RC++L +
Sbjct: 62 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 121
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
PN+ +ELELC +LE DERNFHCWDYRR+V + VAP +EL ++ I NFSNYS
Sbjct: 122 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 180
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
+WHYRS LLP L+P P+ LP ++ + E +V++A FT+P DQSAWFY RWLLG
Sbjct: 181 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 238
Query: 233 ERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRF 292
+ ++ S + V + L S L W
Sbjct: 239 AGSGRCEL----------------------SVEKSTVLQSELESCKELQELEPENKWC-- 274
Query: 293 LLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSES 352
LLT I L++ L P + L+ F LK +DP+R Y D S
Sbjct: 275 ---------------LLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAAYLDDLRS 317
Query: 353 KYKIETFI 360
K+ +E +
Sbjct: 318 KFLLENSV 325
>pdb|3C72|A Chain A, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
Length = 334
Score = 221 bits (563), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 193/368 (52%), Gaps = 52/368 (14%)
Query: 1 MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHGR K S ++A+ +R K+K Y + + +F+KR+ E D+ L LTS++L P
Sbjct: 5 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 64
Query: 57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
D +LWN R+EVL H++ + EE LV EL + CL PKSYGTW RC++L +
Sbjct: 65 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 124
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
PN+ +ELELC +LE DERNFHCWDYRR+V + VAP +EL ++ I NFSNYS
Sbjct: 125 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 183
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
+WHYRS LLP L+P P+ LP ++ + E +V++A FT+P DQSAWFY RWLLG
Sbjct: 184 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 241
Query: 233 ERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRF 292
+ ++ S + V + L S L W
Sbjct: 242 AGSGRCEL----------------------SVEKSTVLQSELESCKELQELEPENKWC-- 277
Query: 293 LLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSES 352
LLT I L++ L P + L+ F LK +DP+R Y D S
Sbjct: 278 ---------------LLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAAYLDDLRS 320
Query: 353 KYKIETFI 360
K+ +E +
Sbjct: 321 KFLLENSV 328
>pdb|4EHM|A Chain A, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|A Chain A, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 221 bits (562), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 139/368 (37%), Positives = 193/368 (52%), Gaps = 52/368 (14%)
Query: 1 MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHGR K S ++A+ +R K+K Y + + +F+KR+ E D+ L LTS++L P
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
D +LWN R+EVL H++ + EE LV EL + CL PKSYGTW RC++L +
Sbjct: 61 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
PN+ +ELELC +LE DERNFHCWDYRR+V + VAP +EL ++ I NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
+WHYRS LLP L+P P+ LP ++ + E +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237
Query: 233 ERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRF 292
+ ++ S + V + L S L W
Sbjct: 238 AGSGRCEL----------------------SVEKSTVLQSELESCKELQELEPENKWC-- 273
Query: 293 LLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSES 352
LLT I L++ L P + L+ F LK +DP+R Y D S
Sbjct: 274 ---------------LLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAAYLDDLRS 316
Query: 353 KYKIETFI 360
K+ +E +
Sbjct: 317 KFLLENSV 324
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 219 bits (557), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 127/304 (41%), Positives = 181/304 (59%), Gaps = 19/304 (6%)
Query: 2 HGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPD 57
HGR K S ++A+ +R K+K Y + + +F+KR+ E D+ L LTS++L PD
Sbjct: 2 HGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPD 61
Query: 58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS 117
+LWN R+EVL H++ + EE LV EL + CL PKSYGTW RC++L +
Sbjct: 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121
Query: 118 RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA 177
PN+ +ELELC +LE DERNFHCWDYRR+V + VAP +EL ++ I NFSNYS+
Sbjct: 122 E-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180
Query: 178 WHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WHYRS LLP L+P P+ LP ++ + E +V++A FT+P DQSAWFY RWLLG
Sbjct: 181 WHYRSCLLPQLHPQPDSGPQGRLP--ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG- 237
Query: 234 RTSPVQIISAGVLP--SGVTFVTFNQLVDLTS---TSQIKVDSNVL-MSWTSLNGASR-S 286
R P ++ + V F++ + + S T + VD L + W + +G +R S
Sbjct: 238 RAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPS 297
Query: 287 FIWV 290
+W+
Sbjct: 298 HVWL 301
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 308 LLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN 367
LLT I L++ L P + L+ F LK +DP+R Y D SK+ +E + A+
Sbjct: 385 LLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442
Query: 368 -QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC----ESLKLTHCS 422
++ +L+ LT + H+ +DLS+N LR L P +A E L+ + +
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-----LRALPPALAALRCLEVLQASDNA 497
Query: 423 LSSLHVFPHLPSLESLDVSHN 443
L ++ +LP L+ L + +N
Sbjct: 498 LENVDGVANLPRLQELLLCNN 518
>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 306
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 22/214 (10%)
Query: 24 YHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHE 83
Y +M + K +EY + AL +T + + ++W YR +L L L++
Sbjct: 32 YKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNIL----KNLPNRNLYD 87
Query: 84 LVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYE----KELELCNYYLELDERN 139
EL ++ L K+Y W R ++ I N + +E ++ L D +N
Sbjct: 88 ----ELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN 143
Query: 140 FHCWDYRRYVTDRHKV-APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPI 198
H W YR+++ D + KEL++ + I+ + N SAW +R LL HL
Sbjct: 144 HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF-----SKKHLAT 198
Query: 199 EQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
+ + E + V+ + P++ S W Y LLG
Sbjct: 199 D-NTIDEELNYVKDKIVKCPQNPSTWNY---LLG 228
>pdb|3SFX|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tipifarnib
pdb|3SFY|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
Length = 349
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 22/231 (9%)
Query: 24 YHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHE 83
Y + M+ +E + AL LT ++R P ++W YR +L + +L +
Sbjct: 52 YKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLED----- 106
Query: 84 LVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCW 143
EL+L + + KSY W R +LD IS + E+E + L D +N+H W
Sbjct: 107 ----ELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ-DPVSEIEYIHGSLLPDPKNYHTW 161
Query: 144 DYRRYV----TDRHKVAPLK---ELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHL 196
Y ++ + +++ + EL++ E + + N SAW +R L + P
Sbjct: 162 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR-VSRPGAETSS 220
Query: 197 PIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLP 247
QD E + ++ P + SAW Y R L + P+ I +LP
Sbjct: 221 RSLQD----ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILP 267
>pdb|3Q73|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase, Apo
Enzyme
pdb|3Q75|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tkcvvm Peptide
pdb|3Q78|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fspp And Ddptasacniq Peptide
pdb|3Q79|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Farnesyl-Ddptasacniq Product
pdb|3Q7A|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And L-778,123
pdb|3Q7F|A Chain A, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And Ethylenediamine Inhibitor 1
Length = 349
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 22/231 (9%)
Query: 24 YHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHE 83
Y + M+ +E + AL LT ++R P ++W YR +L + +L +
Sbjct: 53 YKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLED----- 107
Query: 84 LVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCW 143
EL+L + + KSY W R +LD IS + E+E + L D +N+H W
Sbjct: 108 ----ELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ-DPVSEIEYIHGSLLPDPKNYHTW 162
Query: 144 DYRRYV----TDRHKVAPLK---ELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHL 196
Y ++ + +++ + EL++ E + + N SAW +R L + P
Sbjct: 163 AYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR-VSRPGAETSS 221
Query: 197 PIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLP 247
QD E + ++ P + SAW Y R L + P+ I +LP
Sbjct: 222 RSLQD----ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILP 268
>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|3E37|A Chain A, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 379
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 33/203 (16%)
Query: 39 EYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA 98
E + A LT + + ++W++R+ +L + +++LHE E+ +
Sbjct: 111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL-----QKDLHE----EMNYITAIIEE 161
Query: 99 QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPL 158
QPK+Y W R +++ + R P+ +ELE L D +N+H W +R++V K+
Sbjct: 162 QPKNYQVWHHRRVLVEWL-RDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD- 217
Query: 159 KELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV-FT- 216
EL Y + ++ + N S W+ R + I N+ +++E V +T
Sbjct: 218 NELQYVDQLLKEDVRNNSVWNQR-------------YFVISNTTGYNDRAVLEREVQYTL 264
Query: 217 -----EPKDQSAWFYQRWLLGER 234
P ++SAW Y + +L +R
Sbjct: 265 EMIKLVPHNESAWNYLKGILQDR 287
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY T IE NY
Sbjct: 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 167 QVWHHRRVLVEWL-RDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 212
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 142 CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201
+DY R V R + + + + + IE N +NY+ WH+R LL L D +
Sbjct: 99 VYDYFRAVLQRDERSE-RAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE------- 150
Query: 202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239
E + + + + +PK+ W ++R L+ P Q
Sbjct: 151 ----EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 184
>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|A Chain A, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|A Chain A, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|A Chain A, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2H6G|A Chain A, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
pdb|2H6H|A Chain A, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
pdb|2H6I|A Chain A, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
pdb|2IEJ|A Chain A, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
Length = 382
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 33/203 (16%)
Query: 39 EYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA 98
E + A LT + + ++W++R+ +L + +++LHE E+ +
Sbjct: 111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL-----QKDLHE----EMNYITAIIEE 161
Query: 99 QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPL 158
QPK+Y W R +++ + R P+ +ELE L D +N+H W +R++V K+
Sbjct: 162 QPKNYQVWHHRRVLVEWL-RDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD- 217
Query: 159 KELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV-FT- 216
EL Y + ++ + N S W+ R + I N+ +++E V +T
Sbjct: 218 NELQYVDQLLKEDVRNNSVWNQR-------------YFVISNTTGYNDRAVLEREVQYTL 264
Query: 217 -----EPKDQSAWFYQRWLLGER 234
P ++SAW Y + +L +R
Sbjct: 265 EMIKLVPHNESAWNYLKGILQDR 287
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY T IE NY
Sbjct: 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 167 QVWHHRRVLVEWL-RDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 212
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 142 CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201
+DY R V R + + + + + IE N +NY+ WH+R LL L D +
Sbjct: 99 VYDYFRAVLQRDERSE-RAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE------- 150
Query: 202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239
E + + + + +PK+ W ++R L+ P Q
Sbjct: 151 ----EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 184
>pdb|1O1R|A Chain A, Structure Of Fpt Bound To Ggpp
pdb|1O1S|A Chain A, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|A Chain A, Structure Of Fpt Bound To The Cvim-Fpp Product
Length = 380
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
+ E + A LT + + ++W++R+ +L ++ L EE +
Sbjct: 111 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYITAI 161
Query: 96 LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
+ QPK+Y W R +++ + + P+ +ELE L D +N+H W +R++V ++
Sbjct: 162 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 218
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
EL Y + ++ + N S W+ R H I ++ +++E V
Sbjct: 219 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 264
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
+T P ++SAW Y + +L +R
Sbjct: 265 YTLEMIKLVPHNESAWNYLKGILQDR 290
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY T IE NY
Sbjct: 110 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNY 169
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 170 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 215
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 142 CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201
+DY R V R + + + + + IE N +NY+ WH+R LL L D
Sbjct: 102 VYDYFRAVLQRDERSE-RAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQE------- 153
Query: 202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239
E + + + + +PK+ W ++R L+ P Q
Sbjct: 154 ----EMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQ 187
>pdb|1O5M|A Chain A, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|2ZIR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
pdb|3KSL|A Chain A, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|A Chain A, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 377
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
+ E + A LT + + ++W++R+ +L ++ L EE +
Sbjct: 108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYITAI 158
Query: 96 LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
+ QPK+Y W R +++ + + P+ +ELE L D +N+H W +R++V ++
Sbjct: 159 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 215
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
EL Y + ++ + N S W+ R H I ++ +++E V
Sbjct: 216 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 261
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
+T P ++SAW Y + +L +R
Sbjct: 262 YTLEMIKLVPHNESAWNYLKGILQDR 287
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY T IE NY
Sbjct: 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNY 166
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 167 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 212
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 142 CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201
+DY R V R + + + + + IE N +NY+ WH+R LL L D
Sbjct: 99 VYDYFRAVLQRDERSE-RAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQE------- 150
Query: 202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239
E + + + + +PK+ W ++R L+ P Q
Sbjct: 151 ----EMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQ 184
>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid
Length = 333
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
+ E + A LT + + ++W++R+ +L ++ L EE +
Sbjct: 64 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYITAI 114
Query: 96 LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
+ QPK+Y W R +++ + + P+ +ELE L D +N+H W +R++V ++
Sbjct: 115 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 171
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
EL Y + ++ + N S W+ R H I ++ +++E V
Sbjct: 172 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 217
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
+T P ++SAW Y + +L +R
Sbjct: 218 YTLEMIKLVPHNESAWNYLKGILQDR 243
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY T IE NY
Sbjct: 63 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNY 122
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 123 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 168
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 142 CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201
+DY R V R + + + + + IE N +NY+ WH+R LL L D
Sbjct: 55 VYDYFRAVLQRDERSE-RAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQE------- 106
Query: 202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239
E + + + + +PK+ W ++R L+ P Q
Sbjct: 107 ----EMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQ 140
>pdb|3PZ4|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 379
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
+ E + A LT + + ++W++R+ +L ++ L EE +
Sbjct: 110 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYIIAI 160
Query: 96 LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
+ QPK+Y W R +++ + + P+ +ELE L D +N+H W +R++V ++
Sbjct: 161 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 217
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
EL Y + ++ + N S W+ R H I ++ +++E V
Sbjct: 218 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 263
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
+T P ++SAW Y + +L +R
Sbjct: 264 YTLEMIKLVPHNESAWNYLKGILQDR 289
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY IE NY
Sbjct: 109 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNY 168
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 169 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 214
>pdb|2R2L|A Chain A, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 315
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
+ E + A LT + + ++W++R+ +L ++ L EE +
Sbjct: 55 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYITAI 105
Query: 96 LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
+ QPK+Y W R +++ + + P+ +ELE L D +N+H W +R++V ++
Sbjct: 106 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 162
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
EL Y + ++ + N S W+ R H I ++ +++E V
Sbjct: 163 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 208
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
+T P ++SAW Y + +L +R
Sbjct: 209 YTLEMIKLVPHNESAWNYLKGILQDR 234
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY T IE NY
Sbjct: 54 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNY 113
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 114 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 159
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 142 CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201
+DY R V R + + + + + IE N +NY+ WH+R LL L D
Sbjct: 46 VYDYFRAVLQRDERSE-RAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQE------- 97
Query: 202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239
E + + + + +PK+ W ++R L+ P Q
Sbjct: 98 ----EMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQ 131
>pdb|1FT1|A Chain A, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|A Chain A, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1D8D|A Chain A, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|A Chain A, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|A Chain A, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1N4P|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|A Chain A, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|C Chain C, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|E Chain E, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|G Chain G, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|I Chain I, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|K Chain K, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1SA5|A Chain A, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1S64|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TN7|A Chain A, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|A Chain A, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|1TNB|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|A Chain A, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|C Chain C, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|E Chain E, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|G Chain G, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|I Chain I, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|K Chain K, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|3DPY|A Chain A, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|A Chain A, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3EU5|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|3EUV|A Chain A, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
pdb|4GTM|A Chain A, Ftase In Complex With Bms Analogue 11
pdb|4GTO|A Chain A, Ftase In Complex With Bms Analogue 14
pdb|4GTP|A Chain A, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|A Chain A, Ftase In Complex With Bms Analogue 12
pdb|4GTR|A Chain A, Ftase In Complex With Bms Analogue 13
Length = 377
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
+ E + A LT + + ++W++R+ +L ++ L EE +
Sbjct: 108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYIIAI 158
Query: 96 LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
+ QPK+Y W R +++ + + P+ +ELE L D +N+H W +R++V ++
Sbjct: 159 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 215
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
EL Y + ++ + N S W+ R H I ++ +++E V
Sbjct: 216 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 261
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
+T P ++SAW Y + +L +R
Sbjct: 262 YTLEMIKLVPHNESAWNYLKGILQDR 287
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY IE NY
Sbjct: 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNY 166
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 167 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 212
>pdb|2BED|A Chain A, Structure Of Fpt Bound To Inhibitor Sch207736
Length = 313
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
+ E + A LT + + ++W++R+ +L ++ L EE +
Sbjct: 55 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYITAI 105
Query: 96 LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
+ QPK+Y W R +++ + + P+ +ELE L D +N+H W +R++V ++
Sbjct: 106 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 162
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
EL Y + ++ + N S W+ R H I ++ +++E V
Sbjct: 163 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 208
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
+T P ++SAW Y + +L +R
Sbjct: 209 YTLEMIKLVPHNESAWNYLKGILQDR 234
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY T IE NY
Sbjct: 54 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNY 113
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 114 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 159
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 142 CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201
+DY R V R + + + + + IE N +NY+ WH+R LL L D
Sbjct: 46 VYDYFRAVLQRDERSE-RAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQE------- 97
Query: 202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239
E + + + + +PK+ W ++R L+ P Q
Sbjct: 98 ----EMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQ 131
>pdb|1N95|A Chain A, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|A Chain A, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|A Chain A, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 315
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
+ E + A LT + + ++W++R+ +L ++ L EE +
Sbjct: 54 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYITAI 104
Query: 96 LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
+ QPK+Y W R +++ + + P+ +ELE L D +N+H W +R++V ++
Sbjct: 105 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 161
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
EL Y + ++ + N S W+ R H I ++ +++E V
Sbjct: 162 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 207
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
+T P ++SAW Y + +L +R
Sbjct: 208 YTLEMIKLVPHNESAWNYLKGILQDR 233
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY T IE NY
Sbjct: 53 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNY 112
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 113 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 158
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 142 CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201
+DY R V R + + + + + IE N +NY+ WH+R LL L D
Sbjct: 45 VYDYFRAVLQRDERSE-RAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQE------- 96
Query: 202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239
E + + + + +PK+ W ++R L+ P Q
Sbjct: 97 ----EMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQ 130
>pdb|1NL4|A Chain A, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
Length = 312
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
+ E + A LT + + ++W++R+ +L ++ L EE +
Sbjct: 54 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYITAI 104
Query: 96 LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
+ QPK+Y W R +++ + + P+ +ELE L D +N+H W +R++V ++
Sbjct: 105 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 161
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
EL Y + ++ + N S W+ R H I ++ +++E V
Sbjct: 162 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 207
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
+T P ++SAW Y + +L +R
Sbjct: 208 YTLEMIKLVPHNESAWNYLKGILQDR 233
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY T IE NY
Sbjct: 53 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNY 112
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 113 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 158
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 142 CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201
+DY R V R + + + + + IE N +NY+ WH+R LL L D
Sbjct: 45 VYDYFRAVLQRDERSE-RAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQE------- 96
Query: 202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239
E + + + + +PK+ W ++R L+ P Q
Sbjct: 97 ----EMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQ 130
>pdb|1FT2|A Chain A, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
pdb|1N94|A Chain A, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|A Chain A, Farnesyl Transferase Structure Of Jansen Compound
Length = 315
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
+ E + A LT + + ++W++R+ +L ++ L EE +
Sbjct: 54 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYIIAI 104
Query: 96 LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
+ QPK+Y W R +++ + + P+ +ELE L D +N+H W +R++V ++
Sbjct: 105 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 161
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
EL Y + ++ + N S W+ R H I ++ +++E V
Sbjct: 162 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 207
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
+T P ++SAW Y + +L +R
Sbjct: 208 YTLEMIKLVPHNESAWNYLKGILQDR 233
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY IE NY
Sbjct: 53 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNY 112
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 113 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 158
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 399 LTNNCLRHLTPLVACESLKLTHCSLSSLHVFP--HLPSLESLDVSHNAPNIILC------ 450
+T NCL L SL +THC+L+++ HL L L++S+N + I
Sbjct: 216 MTPNCLYGLN----LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271
Query: 451 VYFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
+ Q ++L L+ + + F L L L+VS N + +E+SVF +IL NP
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331
Query: 509 VSAD 512
++ D
Sbjct: 332 LACD 335
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 26/125 (20%)
Query: 386 FAHCKQVDLSNN------PLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLD 439
F H ++++L+ N P N L +L L L+ L L VF L +L LD
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTL----GLRSNRLKLIPLGVFTGLSNLTKLD 110
Query: 440 VSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEAC 499
+S N I+L FQ L +L+SL+V N + +I F+ +
Sbjct: 111 ISENKIVILLDYMFQDLY----------------NLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 500 VQVIL 504
Q+ L
Sbjct: 155 EQLTL 159
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 384 HCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP--HLPSLESLDVS 441
H H + L+ NP+ + + L + E+L L+SL FP L +L+ L+V+
Sbjct: 77 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136
Query: 442 HN-APNIILCVYFQSL-KLTHCSLS----------SLHVFPHLPSLE-SLDVSHNAIDHI 488
HN + L YF +L L H LS L P + SLD+S N ID I
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI 196
Query: 489 EDSVFAKYEACVQVILTGNPVSADMVVKHC 518
+D F + ++ L GN S++ ++K C
Sbjct: 197 QDQAFQGIKL-HELTLRGNFNSSN-IMKTC 224
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
F + L+ LD+S I+ IED + +ILTGNP+ +
Sbjct: 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 384 HCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP--HLPSLESLDVS 441
H H + L+ NP+ + + L + E+L L+SL FP L +L+ L+V+
Sbjct: 72 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 131
Query: 442 HN-APNIILCVYFQSL-KLTHCSLS----------SLHVFPHLPSLE-SLDVSHNAIDHI 488
HN + L YF +L L H LS L P + SLD+S N ID I
Sbjct: 132 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI 191
Query: 489 EDSVFAKYEACVQVILTGNPVSADMVVKHC 518
+D F + ++ L GN S++ ++K C
Sbjct: 192 QDQAFQGIKL-HELTLRGNFNSSN-IMKTC 219
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
F + L+ LD+S I+ IED + +ILTGNP+ +
Sbjct: 47 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 89
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 411 VACESLKLTHCSLSSLHVFPH--LPSLESLDVSHNAPNII------LCVYFQSLKLTHCS 462
++C+ + S SL+ P +++SLD+S+N I CV Q+L LT
Sbjct: 28 LSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87
Query: 463 LSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
++++ F L SLE LD+S+N + ++ S F + + L GNP
Sbjct: 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 13/140 (9%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
N I SS L SI A K +DLSNN +T L V ++L LT ++++
Sbjct: 33 NGICKGSSGSLNSIPSGLTEA-VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91
Query: 427 H--VFPHLPSLESLDVSHNAPNIILCVYFQSL-KLT--------HCSLSSLHVFPHLPSL 475
F L SLE LD+S+N + + +F+ L LT + +L +F HL L
Sbjct: 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151
Query: 476 ESLDVSH-NAIDHIEDSVFA 494
+ L V + + I+ FA
Sbjct: 152 QILRVGNMDTFTKIQRKDFA 171
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
LS N L L L P L L C L+ L V LP L +LD+SHN
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQ--------L 89
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
QSL L + LP+L LDVS N + + ++ L GN
Sbjct: 90 QSLPLLGQT---------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
LS N L L L P L L C L+ L V LP L +LD+SHN
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQ--------L 89
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
QSL L + LP+L LDVS N + + ++ L GN
Sbjct: 90 QSLPLLGQT---------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
LS N L L L P L L C L+ L V LP L +LD+SHN
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQ--------L 89
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
QSL L + LP+L LDVS N + + ++ L GN
Sbjct: 90 QSLPLLGQT---------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
LS N L L L P L L C L+ L V LP L +LD+SHN
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQ--------L 89
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
QSL L + LP+L LDVS N + + ++ L GN
Sbjct: 90 QSLPLLGQT---------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 411 VACESLKLTHCSLSSLHVFPH--LPSLESLDVSHNAPNII------LCVYFQSLKLTHCS 462
++C+ + S SL+ P +++SLD+S+N I CV Q+L LT
Sbjct: 2 LSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 61
Query: 463 LSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
++++ F L SLE LD+S+N + ++ S F + + L GNP
Sbjct: 62 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 109
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 13/140 (9%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
N I SS L SI A K +DLSNN +T L V ++L LT ++++
Sbjct: 7 NGICKGSSGSLNSIPSGLTEA-VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 65
Query: 427 H--VFPHLPSLESLDVSHNAPNIILCVYFQSL-KLT--------HCSLSSLHVFPHLPSL 475
F L SLE LD+S+N + + +F+ L LT + +L +F HL L
Sbjct: 66 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 125
Query: 476 ESLDVSH-NAIDHIEDSVFA 494
+ L V + + I+ FA
Sbjct: 126 QILRVGNMDTFTKIQRKDFA 145
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
LS N L L L P L L C L+ L V LP L +LD+SHN
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQ--------L 89
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
QSL L + LP+L LDVS N + + ++ L GN
Sbjct: 90 QSLPLLGQT---------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
LS N L L L P L L C L+ L V LP L +LD+SHN
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQ--------L 89
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
QSL L + LP+L LDVS N + + ++ L GN
Sbjct: 90 QSLPLLGQT---------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
LS N L L L P L L C L+ L V LP L +LD+SHN
Sbjct: 39 LSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQ--------L 90
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
QSL L + LP+L LDVS N + + ++ L GN
Sbjct: 91 QSLPLLGQT---------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 135
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 410 LVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLK------LTHCSL 463
LV L L C+L + L LE L++S N ++I FQ L L H +
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 464 SSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
+++ + F L SLE L++SHN + + +F +V L NP
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 410 LVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLK------LTHCSL 463
LV L L C+L + L LE L++S N ++I FQ L L H +
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV 214
Query: 464 SSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
+++ + F L SLE L++SHN + + +F +V L NP
Sbjct: 215 ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII---LC 450
L N L++N L H+ L SL + S + L ++E LD SHN+ N++ +
Sbjct: 173 LQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231
Query: 451 VYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
V LKL H +L+ + P L +D+S+N ++ I F K + ++ ++ N +
Sbjct: 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291
Query: 511 A 511
A
Sbjct: 292 A 292
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 416 LKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL---CVYFQSLKLTHCS---LSSLHVF 469
LKL H +L+ + P L +D+S+N I+ V Q L+ + S L +L+++
Sbjct: 237 LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296
Query: 470 PH-LPSLESLDVSHNAIDHIE 489
+P+L+ LD+SHN + H+E
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVE 317
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 43/176 (24%)
Query: 338 TLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIH-HMHCFAHCKQVDLSN 396
TL+ ++ +K+S + K+ + + R ++ NL+ LQ+ I + +AH Q
Sbjct: 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLY-- 105
Query: 397 NPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSL 456
+ N +R+L P HVF ++P L L + N
Sbjct: 106 --MGFNAIRYLPP-----------------HVFQNVPLLTVLVLERN------------- 133
Query: 457 KLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
LSSL +F + P L +L +S+N ++ IED F + + L+ N ++
Sbjct: 134 -----DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 44/114 (38%), Gaps = 17/114 (14%)
Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
LS N L L L P L L L+ L V LP L +LD+SHN
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ--------L 89
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
QSL L + LP+L LDVS N + + ++ L GN
Sbjct: 90 QSLPLLGQT---------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 44/114 (38%), Gaps = 17/114 (14%)
Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
LS N L L L P L L L+ L V LP L +LD+SHN
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ--------L 89
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
QSL L + LP+L LDVS N + + ++ L GN
Sbjct: 90 QSLPLLGQT---------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 44/114 (38%), Gaps = 17/114 (14%)
Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
LS N L L L P L L L+ L V LP L +LD+SHN
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ--------L 89
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
QSL L + LP+L LDVS N + + ++ L GN
Sbjct: 90 QSLPLLGQT---------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 434 SLESLDVSHNAPNII---LCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIED 490
++E LD SHN+ N++ + V LKL H +L+ + P L +D+S+N ++ I
Sbjct: 206 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY 265
Query: 491 SVFAKYEACVQVILTGNPVSA 511
F K + ++ ++ N + A
Sbjct: 266 HPFVKMQRLERLYISNNRLVA 286
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 416 LKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLHVF 469
LKL H +L+ + P L +D+S+N I+ F + L +++ L +L+++
Sbjct: 231 LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290
Query: 470 PH-LPSLESLDVSHNAIDHIE 489
+P+L+ LD+SHN + H+E
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVE 311
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
F P L+ LD+S I IED + +ILTGNP+ +
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 390 KQVDLSNNPLTNNCLRHLTP-----LVACESLKLTHCSLSSLH--VFPHLPSLESLDVSH 442
K +DLS NPL RHL + L L+ C + ++ + L L +L ++
Sbjct: 31 KNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 443 NAPNIILCVYF------QSLKLTHCSLSSLHVFP--HLPSLESLDVSHNAI 485
N + F Q L +L+SL FP HL +L+ L+V+HN I
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 29/188 (15%)
Query: 326 NEIILKRFD--LLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTS--IH 381
NE L++FD L+ L L + ++ + Y ++ I N +TN+SS L S I
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL---FNCLTNVSSFSLVSVTIE 295
Query: 382 HMHCFAHC---KQVDLSNNPLTNNCLRHLTPLVACESLK-LTHCSLSSLHVFPH--LPSL 435
+ F++ + ++L N C P + +SLK LT S + F LPSL
Sbjct: 296 RVKDFSYNFGWQHLELVN------CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349
Query: 436 ESLDVSHNAPNIILCVY---FQSLKLTHCSLSSLHV------FPHLPSLESLDVSHNAID 486
E LD+S N + C F + L + LS V F L LE LD H+ +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409
Query: 487 HI-EDSVF 493
+ E SVF
Sbjct: 410 QMSEFSVF 417
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
F P L+ LD+S I IED + +ILTGNP+ +
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 390 KQVDLSNNPLTNNCLRHLTP-----LVACESLKLTHCSLSSLH--VFPHLPSLESLDVSH 442
K +DLS NPL RHL + L L+ C + ++ + L L +L ++
Sbjct: 31 KNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 443 NAPNIILCVYF------QSLKLTHCSLSSLHVFP--HLPSLESLDVSHNAI 485
N + F Q L +L+SL FP HL +L+ L+V+HN I
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 29/188 (15%)
Query: 326 NEIILKRFD--LLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTS--IH 381
NE L++FD L+ L L + ++ + Y ++ I N +TN+SS L S I
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL---FNCLTNVSSFSLVSVTIE 295
Query: 382 HMHCFAHC---KQVDLSNNPLTNNCLRHLTPLVACESLK-LTHCSLSSLHVFPH--LPSL 435
+ F++ + ++L N C P + +SLK LT S + F LPSL
Sbjct: 296 RVKDFSYNFGWQHLELVN------CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349
Query: 436 ESLDVSHNAPNIILCVY---FQSLKLTHCSLSSLHV------FPHLPSLESLDVSHNAID 486
E LD+S N + C F + L + LS V F L LE LD H+ +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409
Query: 487 HI-EDSVF 493
+ E SVF
Sbjct: 410 QMSEFSVF 417
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
F P L+ LD+S I IED + +ILTGNP+ +
Sbjct: 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 84/188 (44%), Gaps = 29/188 (15%)
Query: 326 NEIILKRFD--LLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTS--IH 381
NE L++FD L+ L L + ++ + Y ++ I N +TN+SS L S I
Sbjct: 263 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL---FNCLTNVSSFSLVSVTIE 319
Query: 382 HMHCFAHC---KQVDLSNNPLTNNCLRHLTPLVACESLK-LTHCSLSSLHVFPH--LPSL 435
+ F++ + ++L N C P + +SLK LT S + F LPSL
Sbjct: 320 RVKDFSYNFGWQHLELVN------CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 373
Query: 436 ESLDVSHNAPNIILCVY---FQSLKLTHCSLSSLHV------FPHLPSLESLDVSHNAID 486
E LD+S N + C F ++ L + LS V F L LE LD H+ +
Sbjct: 374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 433
Query: 487 HI-EDSVF 493
+ E SVF
Sbjct: 434 QMSEFSVF 441
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 20/111 (18%)
Query: 390 KQVDLSNNPLTNNCLRHLTP-----LVACESLKLTHCSLSSLH--VFPHLPSLESLDVSH 442
K +DLS NPL RHL + L L+ C + ++ + L L +L ++
Sbjct: 55 KNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109
Query: 443 NAPNIILCVYF------QSLKLTHCSLSSLHVFP--HLPSLESLDVSHNAI 485
N + F Q L +L+SL FP HL +L+ L+V+HN I
Sbjct: 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
F P L+ LD+S I IED + +ILTGNP+ +
Sbjct: 50 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNI 447
K +DLS NPL + + L L+ C + ++ + L L +L ++ N
Sbjct: 33 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 448 ILCVYF------QSLKLTHCSLSSLHVFP--HLPSLESLDVSHNAI 485
+ F Q L +L+SL FP HL +L+ L+V+HN I
Sbjct: 93 LALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLI 138
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 18/164 (10%)
Query: 342 LRLNYYKDSESKYKIETFIQTNPRANQITNLSSL-QLTSIHHMHCFAH--------CKQV 392
L N D + + + Q N +NQ+T+L L LT++ + ++ K
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 393 DLSNNPLTNNCLRHLTP---LVACESLKLTHCSLSSLHVFPHLPSLESLDVSHN-----A 444
+L + TNN + +TP L + L L L + L +L LD+++N A
Sbjct: 196 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 255
Query: 445 PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHI 488
P + LKL +S++ L +L +L+++ N ++ I
Sbjct: 256 P-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 298
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
F P L+ LD+S I IED + +ILTGNP+ +
Sbjct: 50 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNI 447
K +DLS NPL + + L L+ C + ++ + L L +L ++ N
Sbjct: 33 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 448 ILCVYF------QSLKLTHCSLSSLHVFP--HLPSLESLDVSHNAI 485
+ F Q L +L+SL FP HL +L+ L+V+HN I
Sbjct: 93 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 138
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
F P L+ LD+S I IED + +ILTGNP+ +
Sbjct: 49 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNI 447
K +DLS NPL + + L L+ C + ++ + L L +L ++ N
Sbjct: 32 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 448 ILCVYF------QSLKLTHCSLSSLHVFP--HLPSLESLDVSHNAI 485
+ F Q L +L+SL FP HL +L+ L+V+HN I
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 137
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 463 LSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
L + +F LP L ++ S+N I IE+ F +++LT N
Sbjct: 47 LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
F P L+ LD+S I IED + +ILTGNP+ +
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNI 447
K +DLS NPL + + L L+ C + ++ + L L +L ++ N
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 448 ILCVYF------QSLKLTHCSLSSLHVFP--HLPSLESLDVSHNAI 485
+ F Q L +L+SL FP HL +L+ L+V+HN I
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
F P L+ LD+S I IED + +ILTGNP+ +
Sbjct: 49 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNI 447
K +DLS NPL + + L L+ C + ++ + L L +L ++ N
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 448 ILCVYF------QSLKLTHCSLSSLHVFP--HLPSLESLDVSHNAI 485
+ F Q L +L+SL FP HL +L+ L+V+HN I
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 137
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 21/101 (20%)
Query: 388 HCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI 447
+ K++DLS NPL+ L P E L L+ L L +L +LD+++N
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN---- 90
Query: 448 ILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHI 488
Y Q L + PS+E+L ++N I +
Sbjct: 91 ----YVQELLVG-------------PSIETLHAANNNISRV 114
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPNI 447
K + LS N ++ + ++ L L+L+H + SL HVF LE LDVSHN
Sbjct: 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN 114
Query: 448 ILCVYFQSLKLTHCSLSSLHVFP 470
I C SL+ S + V P
Sbjct: 115 ISCCPMASLRHLDLSFNDFDVLP 137
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 433 PSLESLDVSHNA------PNIILCVYFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNA 484
P ++L +S N+ P+I + L+L+H + SL HVF LE LDVSHN
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 485 IDHI 488
+ +I
Sbjct: 112 LQNI 115
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 32/141 (22%)
Query: 348 KDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHL 407
K + ++YKIE ++T+ SSL+ + K++DLS NPL+ L
Sbjct: 6 KQNGNRYKIE----------KVTD-SSLKQALASLRQSAWNVKELDLSGNPLSQISAADL 54
Query: 408 TPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH 467
P E L L+ L L +L +LD+++N Y Q L +
Sbjct: 55 APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN--------YVQELLVG-------- 98
Query: 468 VFPHLPSLESLDVSHNAIDHI 488
PS+E+L ++N I +
Sbjct: 99 -----PSIETLHAANNNISRV 114
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 366 ANQITNLSSL-QLTSIHHMHCFAH--------CKQVDLSNNPLTNNCLRHLTP---LVAC 413
NQ+T+L L LT++ + ++ K +L + TNN + +TP L
Sbjct: 159 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 218
Query: 414 ESLKLTHCSLSSLHVFPHLPSLESLDVSHN-----APNIILCVYFQSLKLTHCSLSSLHV 468
+ L L L + L +L LD+++N AP + LKL +S++
Sbjct: 219 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP 277
Query: 469 FPHLPSLESLDVSHNAIDHI 488
L +L +L+++ N ++ I
Sbjct: 278 LAGLTALTNLELNENQLEDI 297
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 14/130 (10%)
Query: 377 LTSIHHMHCFAHCKQVDLSNNPLTN-NCLRHLTPLVACESLKLTHCSLSSL--HVFPHLP 433
+ S+ + + + + L N L + + L+ LT L L LT L SL VF L
Sbjct: 53 IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTY---LILTGNQLQSLPNGVFDKLT 109
Query: 434 SLESLDVSHNA----PNIIL--CVYFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAI 485
+L+ L + N P+ + L L H L SL VF L +L LD+S+N +
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Query: 486 DHIEDSVFAK 495
+ + VF K
Sbjct: 170 QSLPEGVFDK 179
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 366 ANQITNLSSL-QLTSIHHMHCFAH--------CKQVDLSNNPLTNNCLRHLTP---LVAC 413
NQ+T+L L LT++ + ++ K +L + TNN + +TP L
Sbjct: 159 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 218
Query: 414 ESLKLTHCSLSSLHVFPHLPSLESLDVSHN-----APNIILCVYFQSLKLTHCSLSSLHV 468
+ L L L + L +L LD+++N AP + LKL +S++
Sbjct: 219 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP 277
Query: 469 FPHLPSLESLDVSHNAIDHI 488
L +L +L+++ N ++ I
Sbjct: 278 LAGLTALTNLELNENQLEDI 297
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 366 ANQITNLSSL-QLTSIHHMHCFAH--------CKQVDLSNNPLTNNCLRHLTP---LVAC 413
NQ+T+L L LT++ + ++ K +L + TNN + +TP L
Sbjct: 164 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 223
Query: 414 ESLKLTHCSLSSLHVFPHLPSLESLDVSHN-----APNIILCVYFQSLKLTHCSLSSLHV 468
+ L L L + L +L LD+++N AP + LKL +S++
Sbjct: 224 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP 282
Query: 469 FPHLPSLESLDVSHNAIDHI 488
L +L +L+++ N ++ I
Sbjct: 283 LAGLTALTNLELNENQLEDI 302
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 366 ANQITNLSSL-QLTSIHHMHCFAH--------CKQVDLSNNPLTNNCLRHLTP---LVAC 413
NQ+T+L L LT++ + ++ K +L + TNN + +TP L
Sbjct: 163 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 222
Query: 414 ESLKLTHCSLSSLHVFPHLPSLESLDVSHN-----APNIILCVYFQSLKLTHCSLSSLHV 468
+ L L L + L +L LD+++N AP + LKL +S++
Sbjct: 223 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP 281
Query: 469 FPHLPSLESLDVSHNAIDHI 488
L +L +L+++ N ++ I
Sbjct: 282 LAGLTALTNLELNENQLEDI 301
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 366 ANQITNLSSL-QLTSIHHMHCFAH--------CKQVDLSNNPLTNNCLRHLTP---LVAC 413
+NQ+T+L L LT++ + ++ K +L + TNN + +TP L
Sbjct: 160 SNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 219
Query: 414 ESLKLTHCSLSSLHVFPHLPSLESLDVSHN-----APNIILCVYFQSLKLTHCSLSSLHV 468
+ L L L + L +L LD+++N AP + LKL +S++
Sbjct: 220 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP 278
Query: 469 FPHLPSLESLDVSHNAIDHI 488
L +L +L+++ N ++ I
Sbjct: 279 LAGLTALTNLELNENQLEDI 298
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 366 ANQITNLSSL-QLTSIHHMHCFAH--------CKQVDLSNNPLTNNCLRHLTP---LVAC 413
+NQ+T+L L LT++ + ++ K +L + TNN + +TP L
Sbjct: 160 SNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 219
Query: 414 ESLKLTHCSLSSLHVFPHLPSLESLDVSHN-----APNIILCVYFQSLKLTHCSLSSLHV 468
+ L L L + L +L LD+++N AP + LKL +S++
Sbjct: 220 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP 278
Query: 469 FPHLPSLESLDVSHNAIDHI 488
L +L +L+++ N ++ I
Sbjct: 279 LAGLTALTNLELNENQLEDI 298
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 429 FPHLPS-----LESLDVSHNAPNII------LCVYFQSLKLTHCSLSSLH--VFPHLPSL 475
F +PS ++SLD+S N I C Q L L ++++ F L SL
Sbjct: 43 FTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 102
Query: 476 ESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
E LD+S N + + S F + + L GNP
Sbjct: 103 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 135
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 429 FPHLPS-----LESLDVSHNAPNII------LCVYFQSLKLTHCSLSSLH--VFPHLPSL 475
F +PS ++SLD+S N I C Q L L ++++ F L SL
Sbjct: 17 FTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 476 ESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
E LD+S N + + S F + + L GNP
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 24/128 (18%)
Query: 386 FAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESLDV 440
F +Q+ L+ N + +N LT L+ L L+ L S+ +F +L LE LD+
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLL---KLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 441 SHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACV 500
S+N H F LP+L+ L + N + + D +F + +
Sbjct: 355 SYN----------------HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398
Query: 501 QVILTGNP 508
++ L NP
Sbjct: 399 KIWLHTNP 406
>pdb|3F1T|A Chain A, Crystal Structure Of The Q9i3c8_pseae Protein From
Pseudomonas Aeruginosa. Northeast Structural Genomics
Consortium Target Par319a.
pdb|3F1T|B Chain B, Crystal Structure Of The Q9i3c8_pseae Protein From
Pseudomonas Aeruginosa. Northeast Structural Genomics
Consortium Target Par319a.
pdb|3F1T|C Chain C, Crystal Structure Of The Q9i3c8_pseae Protein From
Pseudomonas Aeruginosa. Northeast Structural Genomics
Consortium Target Par319a.
pdb|3F1T|D Chain D, Crystal Structure Of The Q9i3c8_pseae Protein From
Pseudomonas Aeruginosa. Northeast Structural Genomics
Consortium Target Par319a
Length = 148
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 395 SNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQ 454
S NPL R L+ L C+ L LT + + LP +++ + + ++
Sbjct: 2 SENPLLERARRFLSALRHCQVLGLTVEAADEKGLTLRLPYSQAI-IGNPESGVVHGGAIT 60
Query: 455 SLKLTHCSLSSLHVFPHL---PSLE-SLDVSHNAIDHIEDSVFAK-YEACVQVILT 505
+L T C +S++ V P P+L+ +D H A H + FA+ Y VI T
Sbjct: 61 TLXDTTCGISTVCVLPDFEICPTLDLRIDYXHPAEPHKDVYGFAECYRVTPNVIFT 116
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 36/174 (20%)
Query: 366 ANQITNLSSLQLTSIHHMHCFAH-CKQVDLSNNPLTN--NCLRH-LTPLVACESLKLTH- 420
+N++TNL LT + +++C + ++D+S NPL NC R+ LT + + +LT
Sbjct: 94 SNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTEL 153
Query: 421 -CSL----SSLHVFP--HLPSLE-------SLDVSHN---------APNIILCVYFQSLK 457
C L + L V P L +L+ LDVS N NI Q+++
Sbjct: 154 DCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQ 213
Query: 458 LT--HCS---LSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEA--CVQVIL 504
LT CS L+ + V P L L D S N + ++ S +K C+Q L
Sbjct: 214 LTFLDCSSNKLTEIDVTP-LTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDL 266
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 376 QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSL 435
Q+T + + +++LS NPL N + + L + ++L LT ++ + L +L
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 436 ESL-----DVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIED 490
+ L +++ +P + Q L + + +S L +L L +L N I I
Sbjct: 132 QVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI-- 188
Query: 491 SVFAKYEACVQVILTGNPVS 510
S A ++V L N +S
Sbjct: 189 SPLASLPNLIEVHLKNNQIS 208
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 427 HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
H+F L +LES++ F S KL +F +P L+ L+++ N +
Sbjct: 164 HLFDDLENLESIE-------------FGSNKLRQMPRG---IFGKMPKLKQLNLASNQLK 207
Query: 487 HIEDSVFAKYEACVQVILTGNP 508
+ D +F + + ++ L NP
Sbjct: 208 SVPDGIFDRLTSLQKIWLHTNP 229
>pdb|1FH1|A Chain A, Backbone Fold Of Nodf
Length = 92
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 231 LGERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWV 290
LGE T+ ++ S G+ G+ V L DL IK++ N +W++LN V
Sbjct: 29 LGEITTDTELTSLGIDSLGLADV----LWDLEQLYGIKIEMNTADAWSNLNNIGDVVEAV 84
Query: 291 RFLLS 295
R LL+
Sbjct: 85 RGLLT 89
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 420 HCSLSSLHVFPHLPSLESLDVSHNAPNIILCV----YFQSLKLTHCSLSSLHVFPHLPSL 475
H +S ++ HLP LESL + +N I + +L L +S + L L
Sbjct: 118 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 177
Query: 476 ESLDVSHNAIDHIED 490
++L +S N HI D
Sbjct: 178 QNLYLSKN---HISD 189
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 416 LKLTHC--SLSSLHVFPHLPSLESLDVSHN---APNIILCVYFQSLK------LTHCSLS 464
L L+H +SS +F LP+L+ L++ N NI Q+L L+ C LS
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489
Query: 465 SL--HVFPHLPSLESLDVSHNAI 485
S+ H F L + +D+SHN +
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRL 512
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 416 LKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLH 467
L L+H + SL+ VF L L+ L++++N N I F Q L L++ L L+
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330
Query: 468 V--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
F LP + +D+ N I I+D F E + L N ++
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,518,504
Number of Sequences: 62578
Number of extensions: 624524
Number of successful extensions: 2437
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2067
Number of HSP's gapped (non-prelim): 223
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)