BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13451
(522 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92696|PGTA_HUMAN Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens
GN=RABGGTA PE=1 SV=2
Length = 567
Score = 243 bits (619), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 186/578 (32%), Positives = 279/578 (48%), Gaps = 102/578 (17%)
Query: 1 MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHGR K S ++A+ +R K+K Y + + +F+KR+ E D+ L LTS++L P
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
D +LWN R+EVL ++ + EEL LV EL + CL PKSYGTW RC++L +
Sbjct: 61 DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL 120
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
PN+ +ELELC +LE+DERNFHCWDYRR+V + V P +EL ++ I NFSNYS
Sbjct: 121 PE-PNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYS 179
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
+WHYRS LLP L+P P+ LP +D + E +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237
Query: 233 ERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKV------DSNVLMSWTSLNGASR- 285
R P + + +T + L S++++ DS +++ W + +G +R
Sbjct: 238 -RADPQDALRCLHVSRDEACLTVSFSRPLLVGSRMEILLLMVDDSPLIVEWRTPDGRNRP 296
Query: 286 ----------------------SFIWVRFLLSLSCP-------------------YRNYI 304
IW + C +R +
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTAGDVQKECVLLKGRQEGWCRDSTTDEQLFRCEL 356
Query: 305 SV-------ALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIE 357
SV + L S LQ L P ++ +L L++ LDPL Y+ +Y +
Sbjct: 357 SVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPL---LYEKETLQY-FQ 409
Query: 358 TFIQTNP-RANQITNLSS--LQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACE 414
T +P RA + +L S L S+ M +A + + L++ LT C HL L+
Sbjct: 410 TLKAVDPMRATYLDDLRSKFLLENSVLKME-YAEVRVLHLAHKDLTVLC--HLEQLLLVT 466
Query: 415 SLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPS 474
L L+H L +L P L +L L+V + N I SL +LP
Sbjct: 467 HLDLSHNRLRTLP--PALAALRCLEVLQASDNAI---------------ESLDGVTNLPR 509
Query: 475 LESLDVSHNAIDHIEDSVFAKYEACVQVI---LTGNPV 509
L+ L + +N + + +V +C +++ L GNP+
Sbjct: 510 LQELLLCNNRLQ--QPAVLQPLASCPRLVLLNLQGNPL 545
>sp|Q5NVK5|PGTA_PONAB Geranylgeranyl transferase type-2 subunit alpha OS=Pongo abelii
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 242 bits (618), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 187/578 (32%), Positives = 281/578 (48%), Gaps = 102/578 (17%)
Query: 1 MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHGR K S ++A+ +R K+K Y + + +F+KR+ E D+ L LTS++L P
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
D +LWN R+EVL ++ + EEL LV EL + CL PKSYGTW RC++L +
Sbjct: 61 DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL 120
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
PN+ +ELELC +LE+DERNFHCWDYRR+V + V P +EL ++ I NFSNYS
Sbjct: 121 PE-PNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYS 179
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
+WHYRS LLP L+P P+ LP +D + E +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237
Query: 233 ERTSPVQIISAGVLP--SGVTFVTFNQLVDLTSTSQIKV----DSNVLMSWTSLNGASR- 285
R P + + V+F++ + + S ++I + DS +++ W + +G +R
Sbjct: 238 -RADPQDALRCLHVSREEACLTVSFSRPLLVGSRTEILLLMVDDSPLIVEWRTPDGRNRP 296
Query: 286 ----------------------SFIWVRFLLSLSCP-------------------YRNYI 304
IW + C +R +
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTAGDVQKECVLLKGRQEGWCRDSTTDEQLFRCEL 356
Query: 305 SV-------ALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIE 357
SV + L S LQ L P ++ +L L++ LDPL Y+ +Y +
Sbjct: 357 SVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPL---LYEKETLRY-FQ 409
Query: 358 TFIQTNP-RANQITNLSS--LQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACE 414
T +P RA + +L S L S+ M +A + + L++ LT C HL L+
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKME-YAEVRVLHLAHKDLTVLC--HLEQLLLVT 466
Query: 415 SLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPS 474
L L+H L +L P L +L L+V + N I SL +LP
Sbjct: 467 HLDLSHNRLRTLP--PALAALRCLEVLQASDNAI---------------ESLDGVTNLPR 509
Query: 475 LESLDVSHNAIDHIEDSVFAKYEACVQVI---LTGNPV 509
L+ L + +N + +V +C +++ L GNP+
Sbjct: 510 LQELLLCNNRLQR--PAVLQPLASCPRLVLLNLQGNPL 545
>sp|A5A779|PGTA_PIG Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/245 (47%), Positives = 156/245 (63%), Gaps = 12/245 (4%)
Query: 1 MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHGR K S ++A+ +R K+K Y +T+F+KR+ E D+ L LTS++L P
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQTATQTVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
D +LWN R+EVL ++ + EEL LV EL + CL PKSYGTW RC++L +
Sbjct: 61 DFATLWNCRREVLQRLEVQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRL 120
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
PN+ +ELELC +LE+DERNFHCWDYRR+V + V P +EL ++ I NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEVDERNFHCWDYRRFVASQAAVPPAEELAFTDSLITRNFSNYS 179
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
+WHYRS LLP L+P P+ LP +D + E +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237
Query: 233 ERTSP 237
R P
Sbjct: 238 -RADP 241
>sp|Q5EA80|PGTA_BOVIN Geranylgeranyl transferase type-2 subunit alpha OS=Bos taurus
GN=RABGGTA PE=2 SV=1
Length = 567
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 190/579 (32%), Positives = 278/579 (48%), Gaps = 104/579 (17%)
Query: 1 MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHGR K S ++A+ +R K+K Y +T+F+KR+ E D+ L LTS++L P
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQAATQTVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
D +LWN R+EVL ++ + EEL LV EL + CL PKSYGTW RC++L +
Sbjct: 61 DFATLWNCRREVLQQLEVQKSPEELATLVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
PN+ +ELELC +LE+DERNFHCWDYRR+V + V P +EL ++ I NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEVDERNFHCWDYRRFVAAQAAVPPAEELAFTDSLITRNFSNYS 179
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
+WHYRS LLP L+P P+ LP +D + E +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--EDVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237
Query: 233 ERTSPVQ----------------------IISAGV-----------------LPSGVTFV 253
R P ++ +G+ P G
Sbjct: 238 -RADPQDALRCLHVSRDEACLTVSFSRPLLVGSGMETLLLMVDESPLAVEWRTPEGRNRP 296
Query: 254 TFNQLVDLTSTS---QIKVDSNVLMSWTSLNG-------ASRSFIWVRFLLSLSCPYRNY 303
+ L DL +TS Q+ + ++ WT+ + R W R + +R
Sbjct: 297 SHIWLCDLPATSLNDQLPQHTFRVI-WTAGDAQKECVLLKGRQEGWCRDSATDEQLFRCE 355
Query: 304 ISV-------ALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKI 356
+SV + L S LQ L P ++ +L L++ LDPL+ Y+ +Y
Sbjct: 356 LSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLQ---YEKETLQY-F 408
Query: 357 ETFIQTNP-RANQITNLSS--LQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC 413
+T +P RA + +L S L S+ M +A + + L + LT C HL L+
Sbjct: 409 QTLKAVDPMRAAYLDDLRSKFLLENSVLKME-YAEVRVLHLGHKDLTVLC--HLEQLLLV 465
Query: 414 ESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLP 473
L L+H L +L P L +L L+V N I SL +LP
Sbjct: 466 THLDLSHNRLRALP--PALAALRCLEVLQANDNAI---------------ESLDGVTNLP 508
Query: 474 SLESLDVSHNAIDHIEDSVFAKYEACVQVI---LTGNPV 509
L+ L + +N + + +V +C ++ L GNP+
Sbjct: 509 RLQELILCNNRLQ--QPAVLQPLTSCPRLTLLNLQGNPL 545
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 26/189 (13%)
Query: 308 LLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN 367
LLT I L++ L P + L+ F LK +DP+R Y D SK+ +E + A
Sbjct: 385 LLTIILLMRALDPLQYEKE--TLQYFQTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAE 442
Query: 368 -QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC----ESLKLTHCS 422
++ +L LT + H+ +DLS+N LR L P +A E L+ +
Sbjct: 443 VRVLHLGHKDLTVLCHLEQLLLVTHLDLSHNR-----LRALPPALAALRCLEVLQANDNA 497
Query: 423 LSSLHVFPHLPSLESLDVSHN-------------APNIILCVYFQSLKLTHCSLSSLHVF 469
+ SL +LP L+ L + +N P + L + Q L SS H+
Sbjct: 498 IESLDGVTNLPRLQELILCNNRLQQPAVLQPLTSCPRLTL-LNLQGNPLCQAEGSSEHLA 556
Query: 470 PHLPSLESL 478
LPS+ S+
Sbjct: 557 ELLPSVSSI 565
>sp|Q08602|PGTA_RAT Geranylgeranyl transferase type-2 subunit alpha OS=Rattus
norvegicus GN=Rabggta PE=1 SV=1
Length = 567
Score = 221 bits (563), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/305 (41%), Positives = 182/305 (59%), Gaps = 19/305 (6%)
Query: 1 MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHGR K S ++A+ +R K+K Y + + +F+KR+ E D+ L LTS++L P
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
D +LWN R+EVL H++ + EE LV EL + CL PKSYGTW RC++L +
Sbjct: 61 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
PN+ +ELELC +LE DERNFHCWDYRR+V + VAP +EL ++ I NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
+WHYRS LLP L+P P+ LP ++ + E +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237
Query: 233 ERTSPVQIISAGVLP--SGVTFVTFNQLVDLTS---TSQIKVDSNVL-MSWTSLNGASR- 285
R P ++ + V F++ + + S T + VD L + W + +G +R
Sbjct: 238 -RAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRP 296
Query: 286 SFIWV 290
S +W+
Sbjct: 297 SHVWL 301
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 308 LLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN 367
LLT I L++ L P + L+ F LK +DP+R Y D SK+ +E + A+
Sbjct: 385 LLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442
Query: 368 -QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC----ESLKLTHCS 422
++ +L+ LT + H+ +DLS+N LR L P +A E L+ + +
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-----LRALPPALAALRCLEVLQASDNA 497
Query: 423 LSSLHVFPHLPSLESLDVSHN 443
L ++ +LP L+ L + +N
Sbjct: 498 LENVDGVANLPRLQELLLCNN 518
>sp|Q9JHK4|PGTA_MOUSE Geranylgeranyl transferase type-2 subunit alpha OS=Mus musculus
GN=Rabggta PE=1 SV=1
Length = 567
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/249 (46%), Positives = 158/249 (63%), Gaps = 12/249 (4%)
Query: 1 MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHGR K S ++A+ +R K+K Y + + +F+KR+ E D+ L LTS++L P
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKREAGELDESVLELTSQILGANP 60
Query: 57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
D +LWN R+EVL ++ + EEL LV EL + CL PKSYGTW RC++L +
Sbjct: 61 DFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
PN+ +ELELC +LE DERNFHCWDYRR+V + VAP +EL ++ I NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179
Query: 177 AWHYRSKLLPLLYPDPN----NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
+WHYRS LLP L+P P+ LP ++ + E +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLP--ENVLLRELELVQNAFFTDPNDQSAWFYHRWLLG 237
Query: 233 ERTSPVQII 241
R P ++
Sbjct: 238 -RAEPHDVL 245
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 12/141 (8%)
Query: 308 LLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN 367
LLT I L++ L P + L+ F LK +DP+R Y D SK+ +E + A+
Sbjct: 385 LLTIILLMRALDPLLYEKE--TLEYFSTLKAVDPMRAAYLDDLRSKFLVENSVLKMEYAD 442
Query: 368 -QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC----ESLKLTHCS 422
++ +L+ LT + H+ +DLS+N LR L P +A E L+ +
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-----LRALPPALAALRCLEVLQASDNV 497
Query: 423 LSSLHVFPHLPSLESLDVSHN 443
L +L +LP L L + +N
Sbjct: 498 LENLDGVANLPRLRELLLCNN 518
>sp|Q55DQ4|PGTA_DICDI Geranylgeranyl transferase type-2 subunit alpha OS=Dictyostelium
discoideum GN=rabggta PE=3 SV=2
Length = 311
Score = 168 bits (426), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 139/238 (58%), Gaps = 11/238 (4%)
Query: 1 MHGRKKESVSVQEAK----KRSAKVKWYHNLMETIFEKRKNQ--EYDDEALSLTSEVLRN 54
MHG K S ++AK K K++ Y+ L+++ E R+ Q YD+ +LS++ VL
Sbjct: 1 MHGVLKVRTSEEKAKAQRLKELEKIESYNKLVKSFEELREKQNGRYDEISLSVSKLVLIE 60
Query: 55 IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLD 114
P+ ++WNYR+ +L T EL + E+K ++C+ KSY WF R ++
Sbjct: 61 NPEFYTIWNYRRLAILQFTETKENSELQVIYQNEMKFLEECIQRFTKSYWIWFHRQWIAL 120
Query: 115 HISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN 174
+ ++E+E++LC L D RNFHCW +RR++ + EL Y+TEK+E NFSN
Sbjct: 121 RMDNC-DWEREMKLCTKLLNFDLRNFHCWGHRRFILKHSNIKLEDELKYTTEKVEQNFSN 179
Query: 175 YSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
YSAWH RS +LP +Y +P L +K + EF +V +AV+TEPKD S+W Y +WL+
Sbjct: 180 YSAWHQRSSILPKIYKEPEQLL----EKILEEFELVRNAVYTEPKDSSSWIYHKWLVA 233
>sp|O94412|PGTA_SCHPO Geranylgeranyl transferase type-2 subunit alpha
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=bet4 PE=3 SV=1
Length = 344
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 14/245 (5%)
Query: 1 MHGRKKESVSVQE----AKKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHG + +S ++ A+K AK++ Y L+ E RK ++Y + L LT+E+L P
Sbjct: 1 MHGILRVKLSEEQRKLKAEKERAKIEEYRGLVSRFQEARKRKDYSEGNLKLTTELLDWNP 60
Query: 57 DINSLWNYRKEVLLH-MKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDH 115
+ S+WNYR+E+LL+ + ++ E +L+D ELK + PK Y + R + L++
Sbjct: 61 ETYSVWNYRREILLNDVFPKISLNEKQDLLDNELKYVLSKMKVFPKVYWIFNHRRWCLEN 120
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVA-----PLKELNYSTEKIEA 170
+ PN+ E+ + L D RNFH W YRRYV + + A KE+ Y+T I
Sbjct: 121 -APYPNWNYEMMITEKLLSADARNFHGWHYRRYVVSQIERAGNCSLAKKEMEYTTSAIAT 179
Query: 171 NFSNYSAWHYRSKLLPL---LYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQ 227
NFSN+SA H R+KL+ L DPN+ + + E M+ AVFT+P D S W Y
Sbjct: 180 NFSNFSALHNRTKLIETILNLEADPNSQKALAKQILEQELDMIHQAVFTDPDDSSVWIYH 239
Query: 228 RWLLG 232
RWL+G
Sbjct: 240 RWLMG 244
>sp|O93829|PGTA_CANAX Geranylgeranyl transferase type-2 subunit alpha OS=Candida albicans
GN=BET4 PE=3 SV=1
Length = 371
Score = 128 bits (322), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 146/272 (53%), Gaps = 41/272 (15%)
Query: 2 HGRKKESVSVQEAK-----KRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
HG K+ +S +EAK K K+K Y L + IFE R N+ Y DEAL T+E+L P
Sbjct: 3 HGIKRVKLS-EEAKRLKLEKDQIKIKNYRQLTDEIFELRANENYSDEALIKTNELLIINP 61
Query: 57 DINSLWNYRKEVLL--HMKATLAEEELHE-LVDRELKLTKDCLLAQPKSYGTWFQRCYVL 113
+ ++WNYR+E+L+ + + +++++E +++++L L PK Y W R ++L
Sbjct: 62 EFYTIWNYRREILINNYSSSNDKDDQIYEDILNQDLNFVLVQLKKFPKCYWIWNHRRWLL 121
Query: 114 DHISRAP--NYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVA-----------PLKE 160
+ + N++ E + + L+LD+RNFH W YRR+V ++ L E
Sbjct: 122 FELVKLGKVNWKYEFGVVSKLLDLDQRNFHGWHYRRFVVKNMELECKNDTTLILKINLDE 181
Query: 161 LNYSTEKIEANFSNYSAWHYRSKLLPLLY-----------PDPN--NHLP-IE--QDKYV 204
NY+T KI+ +FSN+SAWH R+KL+P +Y D LP IE Q+ +
Sbjct: 182 FNYTTLKIQKDFSNFSAWHNRTKLIPKIYNLIQQQQQQQQKDGKIFGDLPGIELFQNPIL 241
Query: 205 ---NEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
N+ M+++ V+ P+D S W Y WLL +
Sbjct: 242 LLKNDLEMIKTGVYMSPEDTSVWLYLYWLLTD 273
>sp|Q00618|PGTA_YEAST Geranylgeranyl transferase type-2 subunit alpha OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET4 PE=1
SV=3
Length = 327
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 126/243 (51%), Gaps = 19/243 (7%)
Query: 1 MHGRKKESVSVQEAKKRSA----KVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHG K++ + + +++ K+ Y +L E + R + Y EAL TSE+L P
Sbjct: 1 MHGIKRKQWTKELLRQKRVQDEKKIYDYRSLTENVLNMRDEKIYSIEALKKTSELLEKNP 60
Query: 57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDH- 115
+ N++WNYR++++ A+LA E D+EL L PK Y W R +VL H
Sbjct: 61 EFNAIWNYRRDII----ASLASELEIPFWDKELVFVMMLLKDYPKVYWIWNHRLWVLKHY 116
Query: 116 -ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDR-----HKVAPLKELNYSTEKIE 169
S ++ EL + N LE D RN+H W YRR V +K +E Y+T KI
Sbjct: 117 PTSSPKVWQTELAVVNKLLEQDARNYHGWHYRRIVVGNIESITNKSLDKEEFEYTTIKIN 176
Query: 170 ANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVN-EFSMVESAVFTEPKDQSAWFYQR 228
N SNYSAWH R +++ ++ Q +Y+ E S + +A+FT+ +DQS WFY +
Sbjct: 177 NNISNYSAWHQRVQIISRMFQKGEVG---NQKEYIRTEISYIINAMFTDAEDQSVWFYIK 233
Query: 229 WLL 231
W +
Sbjct: 234 WFI 236
>sp|P29703|FNTA_YEAST Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAM2 PE=1 SV=1
Length = 316
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 94/189 (49%), Gaps = 18/189 (9%)
Query: 44 ALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY 103
AL LT+E++ P ++WNYR ++ HM + + L+ +++EL + L PK+Y
Sbjct: 51 ALQLTAEIIDVAPAFYTIWNYRFNIVRHMMSESEDTVLY--LNKELDWLDEVTLNNPKNY 108
Query: 104 GTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRR----YVTDRHKVAPLK 159
W R +L + +P++++EL + ++ D +N+H W YR+ + +D
Sbjct: 109 QIWSYRQSLL-KLHPSPSFKRELPILKLMIDDDSKNYHVWSYRKWCCLFFSDFQ-----H 162
Query: 160 ELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPK 219
EL Y+++ IE + N SAW +R ++ N I + + +E + + P+
Sbjct: 163 ELAYASDLIETDIYNNSAWTHR------MFYWVNAKDVISKVELADELQFIMDKIQLVPQ 216
Query: 220 DQSAWFYQR 228
+ S W Y R
Sbjct: 217 NISPWTYLR 225
>sp|O60052|FNTA_SCHPO Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cwp1 PE=1 SV=1
Length = 294
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 30/194 (15%)
Query: 38 QEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLL 97
+EY AL+LT ++ N P ++W YR ++L H + +D EL+ +
Sbjct: 55 KEYSLRALNLTGFLIMNNPAHYTVWAYRFQILNHTPS---------YIDNELEWLDEIAE 105
Query: 98 AQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAP 157
K+Y W R +L S NYE+ELE E+D +N+H W YR ++
Sbjct: 106 DFQKNYQVWHHRQKIL---SLTKNYERELEFTKKMFEIDSKNYHVWSYRVWILQNFNDYS 162
Query: 158 LKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVN-----EFSMVES 212
+EL + E +E + N SAW++R +L E K V+ E + ++
Sbjct: 163 -QELKLTNELLEKDIYNNSAWNHRFYVL------------FETSKVVSWSLEEELNYLKD 209
Query: 213 AVFTEPKDQSAWFY 226
+ P +QSAW Y
Sbjct: 210 KILFAPDNQSAWNY 223
>sp|Q54RT9|FNTA_DICDI Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Dictyostelium discoideum GN=fntA PE=3
SV=1
Length = 322
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 12/204 (5%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
K++E L L EV++ P ++W YR+EVL KA +E + + +E+ L D
Sbjct: 55 KSKEKSLRVLDLLEEVIQENPSNYTIWYYRREVL---KAIEQDETIEYDIQQEMNLLNDM 111
Query: 96 LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
PK+Y W R ++++ + N EKE L LE D +N+H W +R+++ ++
Sbjct: 112 GETDPKNYQIWNHRRFIVEKYIGSDNKEKEF-LSGVLLE-DAKNYHAWSHRQWLLKTYRD 169
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVF 215
EL + + + N S W++R ++ L P P P+ + EF+ + +
Sbjct: 170 WN-GELAMVDKLLSLDHRNNSVWNHRFFVISNLNPSP---FPLSLIEREVEFAF--NHIR 223
Query: 216 TEPKDQSAWFYQRWLL-GERTSPV 238
P ++S W Y + L G++ S +
Sbjct: 224 HSPNNESPWSYLKGLFKGQKISTI 247
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 116/270 (42%), Gaps = 33/270 (12%)
Query: 87 RELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYE----KELELCNYYLELDERNFHC 142
R L L ++ + P +Y W+ R VL I + E +E+ L N E D +N+
Sbjct: 62 RVLDLLEEVIQENPSNYTIWYYRREVLKAIEQDETIEYDIQQEMNLLNDMGETDPKNYQI 121
Query: 143 WDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDK 202
W++RR++ +++ + KE + + + + NY AW +R LL Y D N
Sbjct: 122 WNHRRFIVEKYIGSDNKEKEFLSGVLLEDAKNYHAWSHRQWLLK-TYRDWN--------- 171
Query: 203 YVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLT 262
E +MV+ + + ++ S W ++ +++ + + PS + V+
Sbjct: 172 --GELAMVDKLLSLDHRNNSVWNHRFFVI-----------SNLNPSPFPLSLIEREVEF- 217
Query: 263 STSQIKVDSNVLMSWTSLNGASR----SFIWVRFLLSLSCPYRNYISVALLTSITLLQHL 318
+ + I+ N W+ L G + S I+ L L YI + + SI L +
Sbjct: 218 AFNHIRHSPNNESPWSYLKGLFKGQKISTIYPSLLDILLEMKSKYIGCSHVNSIILDIYQ 277
Query: 319 HPGSSDSNEIILKRFDLL-KTLDPLRLNYY 347
+ S E L LL +T+DP+ NY+
Sbjct: 278 EQNTKISLENSLNICKLLSETIDPIHKNYW 307
>sp|P93227|FNTA_SOLLC Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1
Length = 346
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 70/175 (40%), Gaps = 36/175 (20%)
Query: 39 EYDDEALSLTSEVLRNIPDINSLWNYRKEVL---------------------------LH 71
E AL LT E ++ P ++W +R+ VL H
Sbjct: 58 ERSTRALQLTGEAIQLNPGNYTVWQFRRVVLEALGVDLREELKFVDRIAGENTKNYQIWH 117
Query: 72 MKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNY 131
+ LAE+ + V EL+ TK K+Y W R +VL + +E EL C
Sbjct: 118 HRRWLAEKLGADAVTNELEFTKKIFSQDAKNYHAWSHRQWVLQALG---GWEDELAYCQQ 174
Query: 132 YLELDERNFHCWDYRRYVTDR----HKVAPLKEL--NYSTEKIEANFSNYSAWHY 180
LE D N W+ R +V R + ++EL NY+ + I A+ N S W Y
Sbjct: 175 LLEDDIYNNSAWNQRYFVVTRSPLLGGLVAMRELEVNYTVQAIRASPENESPWRY 229
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 129/305 (42%), Gaps = 41/305 (13%)
Query: 87 RELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYR 146
R L+LT + + P +Y W R VL+ + + +EL+ + + +N+ W +R
Sbjct: 62 RALQLTGEAIQLNPGNYTVWQFRRVVLEAL--GVDLREELKFVDRIAGENTKNYQIWHHR 119
Query: 147 RYVTDRHKV-APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVN 205
R++ ++ A EL ++ + + NY AW +R +L L + +
Sbjct: 120 RWLAEKLGADAVTNELEFTKKIFSQDAKNYHAWSHRQWVLQAL------------GGWED 167
Query: 206 EFSMVESAVFTEPKDQSAWFYQRW-------LLG--------ERTSPVQIISAGVLPSGV 250
E + + + + + SAW QR+ LLG E VQ I A P
Sbjct: 168 ELAYCQQLLEDDIYNNSAW-NQRYFVVTRSPLLGGLVAMRELEVNYTVQAIRAS--PENE 224
Query: 251 TFVTFNQLVDLTSTSQIKVDSNVL-MSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALL 309
+ + + + T + DS V + W L + +RFLL L C + S L
Sbjct: 225 SPWRYLRGLYKNDTQSLVQDSQVASVLWDVLTSQNSHVHALRFLLDLLC-HDLEPSQELK 283
Query: 310 TSITLLQHLHPGSSDSNEIILKRF-DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQ 368
+++ +L P S + + K+ +L+ DP+R+ Y+ +S +++ N A +
Sbjct: 284 SAVDVLT---PQSCSPDLALTKKICSILEHADPMRVKYWNWRKSMVRVQLLQSQN--AER 338
Query: 369 ITNLS 373
+ NLS
Sbjct: 339 LANLS 343
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 15/125 (12%)
Query: 107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTE 166
F+ YV D S + L+L ++L+ N+ W +RR V + V +EL +
Sbjct: 50 FRAIYVADERS-----TRALQLTGEAIQLNPGNYTVWQFRRVVLEALGVDLREELKFVDR 104
Query: 167 KIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFY 226
N NY WH+R L L D NE + + K+ AW +
Sbjct: 105 IAGENTKNYQIWHHRRWLAEKL----------GADAVTNELEFTKKIFSQDAKNYHAWSH 154
Query: 227 QRWLL 231
++W+L
Sbjct: 155 RQWVL 159
>sp|Q9Y765|FNTA_CANAX Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Candida albicans GN=RAM2 PE=1 SV=1
Length = 306
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 22/214 (10%)
Query: 24 YHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHE 83
Y +M + K +EY + AL +T + + ++W YR +L L L++
Sbjct: 32 YKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNIL----KNLPNRNLYD 87
Query: 84 LVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYE----KELELCNYYLELDERN 139
EL ++ L K+Y W R ++ I N + +E + L D +N
Sbjct: 88 ----ELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFPILEAMLSSDPKN 143
Query: 140 FHCWDYRRYVTDRHKV-APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPI 198
H W YR+++ D + KEL++ + I+ + N SAW +R LL HL
Sbjct: 144 HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF-----SKKHLAT 198
Query: 199 EQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232
+ + E + V+ + P++ S W Y LLG
Sbjct: 199 D-NTIDEELNYVKDKIVKCPQNPSTWNY---LLG 228
>sp|O24304|FNTA_PEA Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Pisum sativum GN=FTA PE=2 SV=1
Length = 333
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 135/314 (42%), Gaps = 54/314 (17%)
Query: 38 QEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLL 97
+E AL+LT+E + ++W++R+ +L +K L E E V+R
Sbjct: 59 KELSSRALALTAEAIGLNAGNYTVWHFRRLLLESLKVDLHVE--REFVER-------VAS 109
Query: 98 AQPKSYGTWFQRCYVLDHIS-RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVA 156
K+Y W R +V + + A N ELE L +D +++H W +R++V ++
Sbjct: 110 GNSKNYQIWHHRRWVAEKLGPEARN--SELEFTKKILSVDAKHYHAWSHRQWVL-QNLGG 166
Query: 157 PLKELNYSTEKIEANFSNYSAWHYRSKLL---PLLYPDPNNHLPIEQDKYVNEFSMVESA 213
EL+Y +E + + N SAW+ R ++ P+L L ++ +E A
Sbjct: 167 WEDELSYCSELLAEDIFNNSAWNQRYFVITRSPVL-----GGLKAMRE---SEVLFTVEA 218
Query: 214 VFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNV 273
+ + P+++S+W Y R G+ T + V +K SN
Sbjct: 219 IISYPENESSWRYLR---------------GLFKDESTLYVNDAQVSSLCLKILKTKSNY 263
Query: 274 LMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRF 333
L + ++L S S I + +R+ I AL I + Q ++I +
Sbjct: 264 LFALSTLLDLSASVI------QPNEDFRDAIE-ALRLQILIKQ--------DSDIAITIC 308
Query: 334 DLLKTLDPLRLNYY 347
+L+ +DP+R+NY+
Sbjct: 309 SILEQVDPIRVNYW 322
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 112 VLDHISRAPNYEKELE-----LCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTE 166
V+D+ RA + KEL L + L+ N+ W +RR + + KV E +
Sbjct: 48 VMDYF-RAVYFAKELSSRALALTAEAIGLNAGNYTVWHFRRLLLESLKVDLHVEREFVER 106
Query: 167 KIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFY 226
N NY WH+R + L P+ N +E + + + K AW +
Sbjct: 107 VASGNSKNYQIWHHRRWVAEKLGPEARN----------SELEFTKKILSVDAKHYHAWSH 156
Query: 227 QRWLL 231
++W+L
Sbjct: 157 RQWVL 161
>sp|Q9LX33|FNTA_ARATH Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Arabidopsis thaliana GN=FTA PE=1 SV=2
Length = 326
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 24/171 (14%)
Query: 60 SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRA 119
++W++R+ VL + L EE E ++R + +D K+Y W R +V + +
Sbjct: 75 TVWHFRRLVLEALNHDLFEE--LEFIER---IAED----NSKNYQLWHHRRWVAEKL--G 123
Query: 120 PNYE-KELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAW 178
P+ +ELE L LD +++H W +R++ T R EL+Y E +EA+ N SAW
Sbjct: 124 PDVAGRELEFTRRVLSLDAKHYHAWSHRQW-TLRALGGWEDELDYCHELLEADVFNNSAW 182
Query: 179 HYRSKLL---PLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFY 226
+ R ++ PLL L ++ +E S A+ T P ++S+W Y
Sbjct: 183 NQRYYVITQSPLL-----GGLEAMRE---SEVSYTIKAILTNPANESSWRY 225
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 23/151 (15%)
Query: 50 EVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQR 109
E + I + NS NY+ L H + +AE+ ++ REL+ T+ L K Y W R
Sbjct: 96 EFIERIAEDNSK-NYQ---LWHHRRWVAEKLGPDVAGRELEFTRRVLSLDAKHYHAWSHR 151
Query: 110 CYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPL---------KE 160
+ L + +E EL+ C+ LE D N W+ R YV + +PL E
Sbjct: 152 QWTLRALG---GWEDELDYCHELLEADVFNNSAWNQRYYVITQ---SPLLGGLEAMRESE 205
Query: 161 LNYSTEKIEANFSNYSAWHYRSKLLPLLYPD 191
++Y+ + I N +N S+W Y L LY D
Sbjct: 206 VSYTIKAILTNPANESSWRY----LKALYKD 232
Score = 32.7 bits (73), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 139 NFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPI 198
N+ W +RR V + +EL + E N NY WH+R + L PD
Sbjct: 73 NYTVWHFRRLVLEALNHDLFEELEFIERIAEDNSKNYQLWHHRRWVAEKLGPDVAGR--- 129
Query: 199 EQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL 231
E + + K AW +++W L
Sbjct: 130 -------ELEFTRRVLSLDAKHYHAWSHRQWTL 155
>sp|Q149C3|LIGO4_MOUSE Leucine-rich repeat and immunoglobulin-like domain containing-NOGO
receptor-interacting protein 4 OS=Mus musculus GN=Lingo4
PE=2 SV=2
Length = 593
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 415 SLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPNIILC------VYFQSLKLTHCSLSSL 466
SL +T C+LSS+ HL L LD+S N + I V Q L+L+ L+S+
Sbjct: 256 SLAITRCNLSSVPFQALHHLSFLRILDLSQNPISAIPARRLSPLVRLQELRLSGACLTSI 315
Query: 467 --HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512
H F L + LDV+ NA+ +E++ F + V + L+GNP++ D
Sbjct: 316 AAHAFHGLTAFHLLDVADNALQTLEETAFPSPDKLVTLRLSGNPLTCD 363
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL--HV 428
NLSS+ ++HH+ + + +DLS NP++ R L+PLV + L+L+ L+S+ H
Sbjct: 263 NLSSVPFQALHHL---SFLRILDLSQNPISAIPARRLSPLVRLQELRLSGACLTSIAAHA 319
Query: 429 FPHLPSLESLDVSHNA 444
F L + LDV+ NA
Sbjct: 320 FHGLTAFHLLDVADNA 335
Score = 35.8 bits (81), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 431 HLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHI 488
H PSLE+LD P ++ + SL +T C+LSS+ HL L LD+S N I I
Sbjct: 237 HWPSLEALD-----PGSLVGLNLSSLAITRCNLSSVPFQALHHLSFLRILDLSQNPISAI 291
>sp|Q6UY18|LIGO4_HUMAN Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 4 OS=Homo sapiens GN=LINGO4
PE=2 SV=1
Length = 593
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 415 SLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPNIILC------VYFQSLKLTHCSLSSL 466
SL +T C+LSS+ HL L LD+S N + I V Q L+L+ L+S+
Sbjct: 256 SLAITRCNLSSVPFQALYHLSFLRVLDLSQNPISAIPARRLSPLVRLQELRLSGACLTSI 315
Query: 467 --HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512
H F L + LDV+ NA+ +E++ F + V + L+GNP++ D
Sbjct: 316 AAHAFHGLTAFHLLDVADNALQTLEETAFPSPDKLVTLRLSGNPLTCD 363
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL--HV 428
NLSS+ +++H+ + + +DLS NP++ R L+PLV + L+L+ L+S+ H
Sbjct: 263 NLSSVPFQALYHL---SFLRVLDLSQNPISAIPARRLSPLVRLQELRLSGACLTSIAAHA 319
Query: 429 FPHLPSLESLDVSHNA 444
F L + LDV+ NA
Sbjct: 320 FHGLTAFHLLDVADNA 335
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 433 PSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHI 488
PSLE+LD P ++ + SL +T C+LSS+ HL L LD+S N I I
Sbjct: 239 PSLEALD-----PGSLVGLNLSSLAITRCNLSSVPFQALYHLSFLRVLDLSQNPISAI 291
>sp|P29702|FNTA_BOVIN Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Bos taurus GN=FNTA PE=2 SV=2
Length = 375
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 94/206 (45%), Gaps = 33/206 (16%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
+ E + A LT + + ++W++R+ +L + +++LHE E+
Sbjct: 104 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL-----QKDLHE----EMNYISAI 154
Query: 96 LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
+ QPK+Y W R +++ + R P+ +ELE L D +N+H W +R++V K+
Sbjct: 155 IEEQPKNYQVWHHRRVLVEWL-RDPS--QELEFIADILTQDAKNYHAWQHRQWVIQEFKL 211
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
EL Y + ++ + N S W+ R + I N+ +++E V
Sbjct: 212 WD-NELQYVDQLLKEDVRNNSVWNQR-------------YFVISNTTGYNDRAILEREVQ 257
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
+T P ++SAW Y + +L +R
Sbjct: 258 YTLEMIKLVPHNESAWNYLKGILQDR 283
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY + IE NY
Sbjct: 103 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYISAIIEEQPKNY 162
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 163 QVWHHRRVLVEWL-RDPS-----------QELEFIADILTQDAKNYHAWQHRQWVIQE 208
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 142 CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201
+DY R V R + + + + + IE N +NY+ WH+R LL L D +
Sbjct: 95 VYDYFRAVLQRDERSE-RAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE------- 146
Query: 202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239
E + + + + +PK+ W ++R L+ P Q
Sbjct: 147 ----EMNYISAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 180
>sp|P49354|FNTA_HUMAN Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Homo sapiens GN=FNTA PE=1 SV=1
Length = 379
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 33/203 (16%)
Query: 39 EYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA 98
E + A LT + + ++W++R+ +L + +++LHE E+ +
Sbjct: 111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL-----QKDLHE----EMNYITAIIEE 161
Query: 99 QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPL 158
QPK+Y W R +++ + R P+ +ELE L D +N+H W +R++V K+
Sbjct: 162 QPKNYQVWHHRRVLVEWL-RDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD- 217
Query: 159 KELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV-FT- 216
EL Y + ++ + N S W+ R + I N+ +++E V +T
Sbjct: 218 NELQYVDQLLKEDVRNNSVWNQR-------------YFVISNTTGYNDRAVLEREVQYTL 264
Query: 217 -----EPKDQSAWFYQRWLLGER 234
P ++SAW Y + +L +R
Sbjct: 265 EMIKLVPHNESAWNYLKGILQDR 287
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY T IE NY
Sbjct: 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 167 QVWHHRRVLVEWL-RDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 212
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 142 CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201
+DY R V R + + + + + IE N +NY+ WH+R LL L D +
Sbjct: 99 VYDYFRAVLQRDERSE-RAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE------- 150
Query: 202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239
E + + + + +PK+ W ++R L+ P Q
Sbjct: 151 ----EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 184
>sp|Q7Z6K3|PTAR1_HUMAN Protein prenyltransferase alpha subunit repeat-containing protein 1
OS=Homo sapiens GN=PTAR1 PE=2 SV=2
Length = 402
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 40/218 (18%)
Query: 31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELK 90
++ RK DE + +T +L PD + WN RKE++L TL ++L
Sbjct: 74 LYRTRKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKELIL--SGTLNP-------IKDLH 124
Query: 91 LTKDCLLAQPKSYGTWFQRCYVLDHI---SRAPNY------------------EKELELC 129
L K L PKS TW R +VL + + P++ ++E+E+C
Sbjct: 125 LGKLALTKFPKSPETWIHRRWVLQQLIQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVC 184
Query: 130 NYYLELDERNFHCWDYRRYVTDRHKVAPLK----ELNYSTEKIEANFSNYSAWHYRSKLL 185
N++ W +R +V +K EL+ + + S++S +HYR LL
Sbjct: 185 GEAAGRYPSNYNAWSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQFLL 244
Query: 186 P-LLYPDPNNHLPIEQDKYVNEFSMV-----ESAVFTE 217
L+ + +EQ+ +E ++V E+AV TE
Sbjct: 245 KSLISQTVIDSSVMEQNPLRSEPALVPPKDEEAAVSTE 282
>sp|A3KPW7|PTAR1_DANRE Protein prenyltransferase alpha subunit repeat-containing protein 1
OS=Danio rerio GN=ptar1 PE=2 SV=1
Length = 426
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 36/182 (19%)
Query: 34 KRKNQEYDDEAL-SLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLT 92
+++ Q D EAL +TS +L PD + WN RKE+L L E ++L L
Sbjct: 76 RQRKQWLDREALVDITSTLLLLNPDFTTAWNVRKELL--QCGVLNPE-------KDLYLG 126
Query: 93 KDCLLAQPKSYGTWFQRCYVLDHISR--APN--------------------YEKELELCN 130
K L PKS TW R +VL + + +P+ ++E+ +C
Sbjct: 127 KLALSKHPKSPETWIHRRWVLQRLQKECSPSGQELKDSAESRRQCERLQRALQEEMRVCA 186
Query: 131 YYLELDERNFHCWDYRRYVTDRHKVAPLK----ELNYSTEKIEANFSNYSAWHYRSKLLP 186
N++ W +R +V LK EL+ + + + S++S +HYR LL
Sbjct: 187 EAAGRYPSNYNAWSHRIWVLQNMAKGNLKVLHDELSSTRLWVSMHVSDHSGFHYRQHLLK 246
Query: 187 LL 188
L
Sbjct: 247 AL 248
>sp|Q61239|FNTA_MOUSE Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Mus musculus GN=Fnta PE=1 SV=1
Length = 377
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
+ E + A LT + + ++W++R+ +L ++ L EE +
Sbjct: 108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYITAI 158
Query: 96 LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
+ QPK+Y W R +++ + + P+ +ELE L D +N+H W +R++V ++
Sbjct: 159 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILSQDAKNYHAWQHRQWVIQEFRL 215
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
EL Y + ++ + N S W+ R H I ++ +++E V
Sbjct: 216 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 261
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
+T P ++SAW Y + +L +R
Sbjct: 262 YTLEMIKLVPHNESAWNYLKGILQDR 287
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY T IE NY
Sbjct: 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYITAIIEEQPKNY 166
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 167 QVWHHRRVLVEWL-KDPS-----------QELEFIADILSQDAKNYHAWQHRQWVIQE 212
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 142 CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201
+DY R V R + + + + + IE N +NY+ WH+R LL L D
Sbjct: 99 VYDYFRAVLQRDERSE-RAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQE------- 150
Query: 202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239
E + + + + +PK+ W ++R L+ P Q
Sbjct: 151 ----EMNYITAIIEEQPKNYQVWHHRRVLVEWLKDPSQ 184
>sp|Q04631|FNTA_RAT Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha OS=Rattus norvegicus GN=Fnta PE=1 SV=1
Length = 377
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 33/206 (16%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
+ E + A LT + + ++W++R+ +L ++ L EE +
Sbjct: 108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEE---------MNYIIAI 158
Query: 96 LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
+ QPK+Y W R +++ + + P+ +ELE L D +N+H W +R++V ++
Sbjct: 159 IEEQPKNYQVWHHRRVLVEWL-KDPS--QELEFIADILNQDAKNYHAWQHRQWVIQEFRL 215
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAV- 214
EL Y + ++ + N S W+ R H I ++ +++E V
Sbjct: 216 WD-NELQYVDQLLKEDVRNNSVWNQR-------------HFVISNTTGYSDRAVLEREVQ 261
Query: 215 FT------EPKDQSAWFYQRWLLGER 234
+T P ++SAW Y + +L +R
Sbjct: 262 YTLEMIKLVPHNESAWNYLKGILQDR 287
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175
+ R E+ +L +EL+ N+ W +RR + + +E+NY IE NY
Sbjct: 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLRSLQKDLQEEMNYIIAIIEEQPKNY 166
Query: 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233
WH+R L+ L DP+ E + + + K+ AW +++W++ E
Sbjct: 167 QVWHHRRVLVEWL-KDPS-----------QELEFIADILNQDAKNYHAWQHRQWVIQE 212
>sp|Q0P5X1|LRIQ1_MOUSE Leucine-rich repeat and IQ domain-containing protein 1 OS=Mus
musculus GN=Lrriq1 PE=2 SV=2
Length = 1673
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 407 LTPLVACESLK---LTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLK---LTH 460
L+ L C +L+ L C L+SL H L+ +D N I C ++L L +
Sbjct: 824 LSTLAECSNLQILSLRRCGLTSLQGLSHCTRLKYIDAQENHIEAISCENLENLSVVLLNN 883
Query: 461 CSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKY 496
L+S+H F +L+SL++SHN I I KY
Sbjct: 884 NLLTSIHGFDGCTNLQSLELSHNKITRISGLESLKY 919
Score = 36.6 bits (83), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 70/186 (37%), Gaps = 56/186 (30%)
Query: 377 LTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLE 436
LTSIH + + ++LS+N +T + L L + L + H L S P++
Sbjct: 886 LTSIHGFDGCTNLQSLELSHNKITR--ISGLESLKYLQELTVDHNQLISTKGLCEAPTIV 943
Query: 437 SLDVSHN----APNIILCVYFQSLKL------------THCSLSSLH------------- 467
LD SHN I C Q +KL H L LH
Sbjct: 944 YLDCSHNHLTGIDGIGNCGLLQIIKLQGNYLREPPSLRNHVLLRELHLDDNSISSVEGLS 1003
Query: 468 -------------------VFP--HLPSLESLDVSHNAIDHIEDSVFAKYEACV---QVI 503
+ P HL SLE LDVS+N + + + V + AC ++
Sbjct: 1004 SCWLPLLQYLSISQNSLATIVPLFHLVSLEKLDVSNNCLSDLTN-VMCWFNACYSLRELC 1062
Query: 504 LTGNPV 509
LTGNPV
Sbjct: 1063 LTGNPV 1068
>sp|Q7M6Z0|R4RL2_MOUSE Reticulon-4 receptor-like 2 OS=Mus musculus GN=Rtn4rl2 PE=2 SV=1
Length = 420
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 399 LTNNCLRHLTPLVACESLK---LTHCSLSSLH--VFPHLPSLESLDVSHN------APNI 447
L NN +R L P +L L +LS++H F HL +LE LD+ N P+
Sbjct: 67 LQNNLIRSLRPGTFGPNLLTLWLFSNNLSTIHPGTFRHLQALEELDLGDNRHLRSLEPDT 126
Query: 448 ILCV-YFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVIL 504
+ QSL L C LSSL ++F L SL+ L + N++ H++D +FA + L
Sbjct: 127 FQGLERLQSLHLYRCQLSSLPGNIFRGLVSLQYLYLQENSLLHLQDDLFADLANLSHLFL 186
Query: 505 TGN 507
GN
Sbjct: 187 HGN 189
>sp|Q9MYW3|TLR4_HORSE Toll-like receptor 4 OS=Equus caballus GN=TLR4 PE=2 SV=1
Length = 843
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
Q+ +LS ++ I H + L+ NP+ + L + L + ++L LSS
Sbjct: 81 QVLDLSRCEIEMIEDDAYQGLNHLSTLILTGNPIRSLALGAFSGLSSLQTLVAVETKLSS 140
Query: 426 LHVFP--HLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHN 483
L FP HL +L+ L+V+HN S KL F +P+LE LD+S+N
Sbjct: 141 LEKFPIGHLKTLKELNVAHN--------LIHSFKLP-------EYFSKMPNLEHLDLSNN 185
Query: 484 AIDHI 488
I +I
Sbjct: 186 KIQNI 190
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 467 HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
H F + P L+ LD+S I+ IED + +ILTGNP+ +
Sbjct: 72 HSFSNFPELQVLDLSRCEIEMIEDDAYQGLNHLSTLILTGNPIRS 116
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNI 447
K++DLS NPL + + L L+ C + + + L L +L ++ N
Sbjct: 57 KELDLSFNPLKELGSHSFSNFPELQVLDLSRCEIEMIEDDAYQGLNHLSTLILTGNPIRS 116
Query: 448 ILCVYF------QSLKLTHCSLSSLHVFP--HLPSLESLDVSHNAI 485
+ F Q+L LSSL FP HL +L+ L+V+HN I
Sbjct: 117 LALGAFSGLSSLQTLVAVETKLSSLEKFPIGHLKTLKELNVAHNLI 162
>sp|Q8BXA7|PHLP2_MOUSE PH domain leucine-rich repeat-containing protein phosphatase 2
OS=Mus musculus GN=Phlpp2 PE=2 SV=3
Length = 1320
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 54/201 (26%)
Query: 330 LKRFDLLKTLDPLRLNYYKD--SESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFA 387
L R +K +D LR+N+ K +E+ + + R NQ+T+L L S+ +HC
Sbjct: 408 LTRMSQVKHVD-LRMNHLKTVITENMEGNKHITHMDLRDNQLTDLDLSSLCSLEQLHC-- 464
Query: 388 HCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCS---LSSLHVFPHLPSL--------- 435
N LR LT ++ SL+ + S L++++V+P +PSL
Sbjct: 465 ------------ERNQLRELT--LSGFSLRTLYASWNRLTAVNVYP-VPSLLTSLELSQN 509
Query: 436 ---------------ESLDVSHNAPNIILCVYFQSLKLTHCSLSS--LHVFP----HLPS 474
E LD+SHN + SL L + +HV P H+P
Sbjct: 510 LLECVPDWACEAKKLEILDISHNLLTEVPMRILSSLSLRKLMVGHNHIHVLPALVEHIP- 568
Query: 475 LESLDVSHNAIDHIEDSVFAK 495
LE LD+ HN + + D++F+K
Sbjct: 569 LEVLDIQHNTLSRLPDTLFSK 589
>sp|Q86UN3|R4RL2_HUMAN Reticulon-4 receptor-like 2 OS=Homo sapiens GN=RTN4RL2 PE=1 SV=1
Length = 420
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 399 LTNNCLRHLTPLVACESLK---LTHCSLSSLH--VFPHLPSLESLDVSHN------APNI 447
L NN +R L P +L L +LS+++ F HL +LE LD+ N P+
Sbjct: 67 LQNNLIRTLRPGTFGSNLLTLWLFSNNLSTIYPGTFRHLQALEELDLGDNRHLRSLEPDT 126
Query: 448 ILCV-YFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVIL 504
+ QSL L C LSSL ++F L SL+ L + N++ H++D +FA + L
Sbjct: 127 FQGLERLQSLHLYRCQLSSLPGNIFRGLVSLQYLYLQENSLLHLQDDLFADLANLSHLFL 186
Query: 505 TGN 507
GN
Sbjct: 187 HGN 189
>sp|Q2V898|TLR4_BOSTR Toll-like receptor 4 OS=Boselaphus tragocamelus GN=TLR4 PE=2 SV=1
Length = 841
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
Q+ +LS ++ I H + L+ NP+ + + L + + L +L S
Sbjct: 81 QVLDLSRCEIKIIEDDTFQGLNHLSTLILTGNPIQSLAWGAFSGLSSLQKLVAVETNLVS 140
Query: 426 LHVFP--HLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHN 483
L+ FP HL +L+ L+V+HN + S KL F +LP+LE LD+S+N
Sbjct: 141 LNDFPIGHLKTLKELNVAHN--------FIHSFKLPE-------YFSNLPNLEHLDLSNN 185
Query: 484 AIDHI 488
I +I
Sbjct: 186 KIQNI 190
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 467 HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
H F P L+ LD+S I IED F +ILTGNP+ +
Sbjct: 72 HNFSSFPELQVLDLSRCEIKIIEDDTFQGLNHLSTLILTGNPIQS 116
>sp|A1L3L1|PTR1B_XENLA Protein prenyltransferase alpha subunit repeat-containing protein
1-B (Fragment) OS=Xenopus laevis GN=ptar1-b PE=2 SV=1
Length = 431
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 34/169 (20%)
Query: 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPK 101
DE + +T +L PD + WN RKE++ TL ++L+L K L PK
Sbjct: 84 DELIDVTCTLLLLNPDFTTAWNVRKELI--QSGTLNPV-------KDLQLGKLALTKFPK 134
Query: 102 SYGTWFQRCYVLDHISR--------------APNYEK-------ELELCNYYLELDERNF 140
S TW R +VL + + YE+ E+ +C N+
Sbjct: 135 SPETWIHRRWVLQRVVQELVVAAVVGKDATCPETYERIQTIVQEEMHVCYEAAGRYPSNY 194
Query: 141 HCWDYRRYVTDRHKVAPLK----ELNYSTEKIEANFSNYSAWHYRSKLL 185
+ W +R +V +K EL+ + + + S++S +HYR LL
Sbjct: 195 NSWSHRIWVIQHLGNLNVKLLIDELSSTKHWVSMHVSDHSGFHYRQFLL 243
>sp|Q80WD1|R4RL2_RAT Reticulon-4 receptor-like 2 OS=Rattus norvegicus GN=Rtn4rl2 PE=2
SV=1
Length = 420
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 399 LTNNCLRHLTPLVACE---SLKLTHCSLSSLH--VFPHLPSLESLDVSHN------APNI 447
L NN +R L P +L L +LS+++ F HL +LE LD+ N P+
Sbjct: 67 LQNNLIRSLRPGTFGPNLLTLWLFSNNLSTIYPGTFRHLQALEELDLGDNRHLRSLEPDT 126
Query: 448 ILCV-YFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVIL 504
+ QSL L C LSSL ++F L SL+ L + N++ H++D +FA + L
Sbjct: 127 FQGLERLQSLHLYRCQLSSLPGNIFRGLVSLQYLYLQENSLLHLQDDLFADLANLSHLFL 186
Query: 505 TGN 507
GN
Sbjct: 187 HGN 189
>sp|Q9GL65|TLR4_BOVIN Toll-like receptor 4 OS=Bos taurus GN=TLR4 PE=2 SV=2
Length = 841
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
Q+ +LS ++ I H + L+ NP+ + + L + + L +L S
Sbjct: 81 QVLDLSRCEIKIIEDDTFQGLNHLSTLILTGNPIQSLAWGAFSGLSSLQKLVAVETNLVS 140
Query: 426 LHVFP--HLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHN 483
L+ FP HL +L+ L+V+HN + S KL F +LP+LE LD+S+N
Sbjct: 141 LNDFPIGHLKNLKELNVAHN--------FIHSFKLPE-------YFSNLPNLEHLDLSNN 185
Query: 484 AIDHI 488
I +I
Sbjct: 186 KIQNI 190
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 467 HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
H F P L+ LD+S I IED F +ILTGNP+ +
Sbjct: 72 HNFSSFPELQVLDLSRCEIKIIEDDTFQGLNHLSTLILTGNPIQS 116
>sp|Q95LA9|TLR2_BOVIN Toll-like receptor 2 OS=Bos taurus GN=TLR2 PE=2 SV=1
Length = 784
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 387 AHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA 444
A K +DLSNN +T R L V ++L+L + ++ F HL +LE LD+S+N
Sbjct: 52 AGVKSLDLSNNDITYVGNRDLQRCVNLKTLRLGANEIHTVEEDSFFHLRNLEYLDLSYNR 111
Query: 445 PNIILCVYFQSLKL---------THCSLSSLHVFPHLPSLESLDVSH-NAIDHIEDSVFA 494
+ + +F+SL + + +L +F HLP+L +L V + N+ I + F
Sbjct: 112 LSNLSSSWFRSLYVLKFLNLLGNLYKTLGETSLFSHLPNLRTLKVGNSNSFTEIHEKDFT 171
>sp|B5T267|TLR2_BOSIN Toll-like receptor 2 OS=Bos indicus GN=TLR2 PE=3 SV=1
Length = 784
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 387 AHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA 444
A K +DLSNN +T R L V ++L+L + ++ F HL +LE LD+S+N
Sbjct: 52 AGVKSLDLSNNEITYVSNRDLQRCVNLKTLRLGANEIHTVEEDSFFHLRNLEYLDLSYNR 111
Query: 445 PNIILCVYFQSLKL---------THCSLSSLHVFPHLPSLESLDVSH-NAIDHIEDSVFA 494
+ + +F+SL + + +L +F HLP+L +L V + N+ I + F
Sbjct: 112 LSNLSSSWFRSLYVLKFLNLLGNLYKTLGETSLFSHLPNLRTLKVGNSNSFTEIHEKDFT 171
>sp|Q9QUK6|TLR4_MOUSE Toll-like receptor 4 OS=Mus musculus GN=Tlr4 PE=1 SV=1
Length = 835
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 384 HCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP--HLPSLESLDVS 441
H H + L+ NP+ + + L + E+L L+SL FP L +L+ L+V+
Sbjct: 98 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 157
Query: 442 HN-APNIILCVYFQSL-KLTHCSLS----------SLHVFPHLPSLE-SLDVSHNAIDHI 488
HN + L YF +L L H LS L P + SLD+S N ID I
Sbjct: 158 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI 217
Query: 489 EDSVFAKYEACVQVILTGNPVSADMVVKHC 518
+D F + ++ L GN S++ ++K C
Sbjct: 218 QDQAFQGIKLH-ELTLRGNFNSSN-IMKTC 245
>sp|Q2V897|TLR2_BOSTR Toll-like receptor 2 OS=Boselaphus tragocamelus GN=TLR2 PE=2 SV=1
Length = 784
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 387 AHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA 444
A K +DLSNN +T R L V ++L+L + ++ F HL +LE LD+S+N
Sbjct: 52 AGVKSLDLSNNEITYVGNRDLQRCVNLKTLRLGANEIHTVEEDSFFHLRNLEYLDLSYNR 111
Query: 445 PNIILCVYFQSLKL---------THCSLSSLHVFPHLPSLESLDVSH-NAIDHIEDSVFA 494
+ + +F+SL + + +L +F HLP L +L V + N+ I + F
Sbjct: 112 LSNLSSSWFRSLYVLKFLNLLGNLYKTLGETSLFSHLPDLRTLKVGNSNSFTEIHEKDFT 171
>sp|Q68Y56|TLR4_PIG Toll-like receptor 4 OS=Sus scrofa GN=TLR4 PE=2 SV=1
Length = 841
Score = 40.4 bits (93), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP--HLPSLESLDVSHNAPNIILCV 451
L+ NP+ + L + L + + L +L+SL FP HL +L L+V+HN
Sbjct: 109 LTGNPIQSLALGAFSGLPSLQKLVAVETNLASLEDFPIGHLKTLNELNVAHN-------- 160
Query: 452 YFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHI 488
+ S KL F +LP+LE LD+S N I++I
Sbjct: 161 HIHSFKLPE-------YFSNLPNLEHLDLSKNKIENI 190
Score = 32.7 bits (73), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
F P L+ LD+S I I+D + +ILTGNP+ +
Sbjct: 74 FSSFPELQVLDLSRCEIQTIDDDAYQGLNYLSTLILTGNPIQS 116
>sp|Q9N008|LIGO1_MACFA Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Macaca fascicularis
GN=LINGO1 PE=2 SV=1
Length = 614
Score = 40.4 bits (93), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 399 LTNNCLRHLTPLVACESLKLTHCSLSSLHVFP--HLPSLESLDVSHNAPNIILC------ 450
+T NCL L SL +THC+L+++ HL L L++S+N + I
Sbjct: 249 MTPNCLYGLN----LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 304
Query: 451 VYFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
+ Q ++L L+ + + F L L L+VS N + +E+SVF +IL NP
Sbjct: 305 LRLQEIQLVGGQLAMVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 364
Query: 509 VSAD 512
++ D
Sbjct: 365 LACD 368
>sp|Q96FE5|LIGO1_HUMAN Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Homo sapiens GN=LINGO1
PE=1 SV=2
Length = 620
Score = 40.4 bits (93), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 399 LTNNCLRHLTPLVACESLKLTHCSLSSLHVFP--HLPSLESLDVSHNAPNIILC------ 450
+T NCL L SL +THC+L+++ HL L L++S+N + I
Sbjct: 255 MTPNCLYGLN----LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 310
Query: 451 VYFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
+ Q ++L L+ + + F L L L+VS N + +E+SVF +IL NP
Sbjct: 311 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 370
Query: 509 VSAD 512
++ D
Sbjct: 371 LACD 374
>sp|O62220|AN321_CAEEL Acidic leucine-rich nuclear phosphoprotein 32-related protein 1
OS=Caenorhabditis elegans GN=F33H2.3 PE=3 SV=1
Length = 229
Score = 40.4 bits (93), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 410 LVACESLKLTHCSLSSLHVFPHLPSLESLDVSHN--APNIILCVYFQ--------SLKLT 459
L+ E L + C L++L FP LP+L LD+S N N V + +L
Sbjct: 40 LINLEMLSMVKCGLTTLAGFPTLPALTYLDISDNQLGDNASFDVLVKNAPDLKKITLASN 99
Query: 460 HCSLSSLHVFPHLPSLESLDVSHN 483
SL +L LP+L LD+S+N
Sbjct: 100 KLSLDNLRCLKVLPNLFELDLSNN 123
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 451 VYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI 485
+ + L + C L++L FP LP+L LD+S N +
Sbjct: 41 INLEMLSMVKCGLTTLAGFPTLPALTYLDISDNQL 75
>sp|Q5RDJ4|LIGO1_PONAB Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Pongo abelii GN=LINGO1
PE=2 SV=1
Length = 614
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 399 LTNNCLRHLTPLVACESLKLTHCSLSSLHVFP--HLPSLESLDVSHNAPNIILC------ 450
+T NCL L SL +THC+L+++ HL L L++S+N + I
Sbjct: 249 MTPNCLYGLN----LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 304
Query: 451 VYFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
+ Q ++L L+ + + F L L L+VS N + +E+SVF +IL NP
Sbjct: 305 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 364
Query: 509 VSAD 512
++ D
Sbjct: 365 LACD 368
>sp|B2LT61|TLR2_BISBI Toll-like receptor 2 OS=Bison bison GN=TLR2 PE=3 SV=1
Length = 784
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 387 AHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA 444
A K +DLSNN +T R L V ++L+L + ++ F HL +LE LD+S+N
Sbjct: 52 AGVKSLDLSNNEITYVGNRDLQRCVNLKTLRLGANEIHTVEEDSFFHLRNLEYLDLSYNR 111
Query: 445 PNIILCVYFQSLKL---------THCSLSSLHVFPHLPSLESLDVSH-NAIDHIEDSVFA 494
+ + +F+SL + + +L +F HLP+L +L V + N+ I + F
Sbjct: 112 LSNLSSSWFRSLYVLKFLNLLGNLYKTLGETSLFSHLPNLXTLKVGNSNSFTEIHEKDFT 171
>sp|B2LT64|TLR2_GIRCA Toll-like receptor 2 OS=Giraffa camelopardalis GN=TLR2 PE=3 SV=1
Length = 784
Score = 40.0 bits (92), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 387 AHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA 444
A K +DLSNN +T+ R L V ++L+L + ++ F HL SLE LD+S+N
Sbjct: 52 AGVKSLDLSNNEITHVGNRDLQSCVNLKTLRLGANEIHTVEEDSFFHLRSLEYLDLSYNR 111
Query: 445 PNIILCVYFQSLKL---------THCSLSSLHVFPHLPSLESLDVSH-NAIDHIEDSVFA 494
+ + +F+SL + + +L +F HL +L +L V + N+ I + F
Sbjct: 112 LSNLSSSWFRSLYVLKFLNLLGNLYRTLGETSLFSHLSNLRTLKVGNSNSFTEIHEKDFT 171
>sp|Q01631|CYAA_NEUCR Adenylate cyclase OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cr-1
PE=3 SV=2
Length = 2300
Score = 39.7 bits (91), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 38/145 (26%)
Query: 399 LTNNCLRHLTP-LVACESLKLTHCSLSSLHVFP----HLPSLESLDVSHNAPN------- 446
L NNCLR L P L A +SL+ + S + L VFP L ++ LD+S N+ N
Sbjct: 970 LANNCLRSLPPTLGAYKSLRTLNISSNFLDVFPSFICELETIVDLDLSFNSINNLPDNLM 1029
Query: 447 ----------------------IILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484
+ V + L + + +S++ V LP LE L HN
Sbjct: 1030 KLRNLEKFVITNNRLSGPISESVRDLVSLRELDIRYNQISTIDVLSDLPRLEILSADHNQ 1089
Query: 485 IDHIEDSVFAKYEACVQVILTGNPV 509
I S +E + L NP+
Sbjct: 1090 ISKFSGS----FERLRSLKLNSNPI 1110
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 355 KIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACE 414
++ET + + N I NL L + ++ F ++NN L+ + LV+
Sbjct: 1007 ELETIVDLDLSFNSINNLPD-NLMKLRNLEKFV------ITNNRLSGPISESVRDLVSLR 1059
Query: 415 SLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVY--FQSLKLTHCSLSSLHVFPHL 472
L + + +S++ V LP LE L HN + + +SLKL + V +
Sbjct: 1060 ELDIRYNQISTIDVLSDLPRLEILSADHNQISKFSGSFERLRSLKLNSNPIVKFEVKAPV 1119
Query: 473 PSLESLDVSHNAIDHIEDSV 492
P+L+ L++S+ + I++S+
Sbjct: 1120 PTLKILNLSNAQLASIDESI 1139
>sp|Q1ENI8|PXDN_CAEEL Peroxidasin homolog OS=Caenorhabditis elegans GN=pxn-1 PE=1 SV=1
Length = 1285
Score = 39.7 bits (91), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 414 ESLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPNII--LCVYFQ-----SLKLTHCSLS 464
E+L LTH + + +V HLP L+ L ++HN I LC + +LK H
Sbjct: 79 ETLVLTHNKIKIIEENVLDHLPELKRLSLAHNELVYIPPLCSDSRPLASLNLKRNHIQFI 138
Query: 465 SLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512
V + P L LD SHN I + +F A L NP D
Sbjct: 139 DEQVLRYFPDLTQLDFSHNRIQSLRTKLFDNLPALSHAHLHSNPWHCD 186
>sp|Q6ZVD8|PHLP2_HUMAN PH domain leucine-rich repeat-containing protein phosphatase 2
OS=Homo sapiens GN=PHLPP2 PE=1 SV=3
Length = 1323
Score = 39.7 bits (91), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 54/202 (26%)
Query: 329 ILKRFDLLKTLDPLRLNYYKDS--ESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCF 386
+L R + +K +D LR+N+ K E+ + + R N++T+L L S+ +HC
Sbjct: 410 VLNRMNHIKHVD-LRMNHLKTMVIENLEGNKHITHVDLRDNRLTDLDLSSLCSLEQLHC- 467
Query: 387 AHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCS---LSSLHVFPHLPSL-------- 435
N LR LT ++ SL+ + S L++++V+P +PSL
Sbjct: 468 -------------GRNQLRELT--LSGFSLRTLYASSNRLTAVNVYP-VPSLLTFLDLSR 511
Query: 436 ----------------ESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHV------FPHLP 473
E LDVS+N + SL L L HV H+P
Sbjct: 512 NLLECVPDWACEAKKIEVLDVSYNLLTEVPVRILSSLSLRKLMLGHNHVQNLPTLVEHIP 571
Query: 474 SLESLDVSHNAIDHIEDSVFAK 495
LE LD+ HNA+ + D++F+K
Sbjct: 572 -LEVLDLQHNALTRLPDTLFSK 592
>sp|Q50L44|LIGO1_CHICK Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Gallus gallus
GN=LINGO1 PE=2 SV=1
Length = 613
Score = 39.7 bits (91), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 399 LTNNCLRHLTPLVACESLKLTHCSLSSLHVFP--HLPSLESLDVSHNAPNIIL------- 449
+T+NCL L SL +THC+L+S+ HL L L++S+N P + +
Sbjct: 248 MTSNCLYGLN----LTSLSITHCNLTSIPYVSVRHLVYLRFLNLSYN-PIVTIEGSMLHD 302
Query: 450 CVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
+ Q ++L L+++ F L L L+VS N + +E+S F +IL N
Sbjct: 303 LLRLQEIQLVGGQLTTVEPFAFRGLNYLRILNVSGNLLTTLEESAFHSVGNLETLILDNN 362
Query: 508 PVSAD 512
P++ D
Sbjct: 363 PLACD 367
>sp|Q24020|FLII_DROME Protein flightless-1 OS=Drosophila melanogaster GN=fliI PE=2 SV=1
Length = 1256
Score = 39.3 bits (90), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 11/106 (10%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP----HLPSLESLDVSHNA- 444
K +DLS+NPL LR L L + E LK++ + L+ FP L +L LD+SHN+
Sbjct: 173 KTLDLSHNPLELFQLRQLPSLQSLEVLKMSGTQRTLLN-FPTSIDSLANLCELDLSHNSL 231
Query: 445 PNIILCVY----FQSLKLTHCSLSSLHVFPHL-PSLESLDVSHNAI 485
P + CVY L L+ L+ L L LESL++S N +
Sbjct: 232 PKLPDCVYNVVTLVRLNLSDNELTELTAGVELWQRLESLNLSRNQL 277
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 9/119 (7%)
Query: 383 MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL-HVFPHLPSLESLDVS 441
M + VD + N + + + + L L L+ + HL LE L ++
Sbjct: 1 MSVLPFVRGVDFTKNDFSATFPSSMRQMSRVQWLTLDRTQLAEIPEELGHLQKLEHLSLN 60
Query: 442 HNAPNIILCVY-----FQSLKLTHCSLSSLHVFP---HLPSLESLDVSHNAIDHIEDSV 492
HN I +SL L H L + + P HL L +LD+SHN + + + +
Sbjct: 61 HNRLEKIFGELTELSCLRSLDLRHNQLKNSGIPPELFHLEELTTLDLSHNKLKEVPEGL 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,836,561
Number of Sequences: 539616
Number of extensions: 7882741
Number of successful extensions: 21882
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 277
Number of HSP's that attempted gapping in prelim test: 20847
Number of HSP's gapped (non-prelim): 1009
length of query: 522
length of database: 191,569,459
effective HSP length: 122
effective length of query: 400
effective length of database: 125,736,307
effective search space: 50294522800
effective search space used: 50294522800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)