Query psy13451
Match_columns 522
No_of_seqs 563 out of 3894
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 19:46:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dce_A Protein (RAB geranylger 100.0 2.1E-75 7.1E-80 622.9 38.7 484 1-504 1-567 (567)
2 3dss_A Geranylgeranyl transfer 100.0 2.3E-62 8E-67 482.2 22.6 320 1-362 2-327 (331)
3 3dra_A Protein farnesyltransfe 100.0 1.2E-47 4.2E-52 375.6 21.6 263 22-352 30-301 (306)
4 3q7a_A Farnesyltransferase alp 100.0 3.9E-45 1.3E-49 360.9 24.4 277 22-352 51-345 (349)
5 1dce_A Protein (RAB geranylger 100.0 2.6E-45 8.9E-50 390.9 2.0 362 85-513 45-549 (567)
6 3dra_A Protein farnesyltransfe 100.0 2.3E-32 7.7E-37 267.5 15.7 205 23-233 66-305 (306)
7 3q7a_A Farnesyltransferase alp 100.0 3E-31 1E-35 261.8 12.6 168 52-236 47-216 (349)
8 3dss_A Geranylgeranyl transfer 100.0 3.5E-29 1.2E-33 246.1 17.4 176 42-231 91-280 (331)
9 2h6f_A Protein farnesyltransfe 100.0 3.2E-27 1.1E-31 239.6 21.3 263 23-355 95-364 (382)
10 2h6f_A Protein farnesyltransfe 99.9 7.6E-22 2.6E-26 200.0 11.0 160 50-235 88-248 (382)
11 1ozn_A Reticulon 4 receptor; N 99.8 1.9E-19 6.6E-24 175.3 16.1 183 326-515 48-243 (285)
12 2o6q_A Variable lymphocyte rec 99.8 4.4E-19 1.5E-23 171.4 18.0 174 334-514 37-222 (270)
13 3m19_A Variable lymphocyte rec 99.8 1.1E-18 3.8E-23 166.6 19.0 145 368-512 38-194 (251)
14 3rfs_A Internalin B, repeat mo 99.8 9.8E-19 3.4E-23 169.1 18.6 177 329-514 36-222 (272)
15 3zyj_A Leucine-rich repeat-con 99.8 4.5E-19 1.6E-23 183.7 15.5 182 327-515 105-297 (440)
16 1p9a_G Platelet glycoprotein I 99.8 1.9E-18 6.4E-23 168.7 17.9 173 334-515 31-213 (290)
17 3zyi_A Leucine-rich repeat-con 99.8 7.4E-19 2.5E-23 182.7 14.9 181 328-515 117-308 (452)
18 2v9t_B SLIT homolog 2 protein 99.8 2E-18 6.8E-23 161.4 15.9 147 368-515 14-170 (220)
19 3e6j_A Variable lymphocyte rec 99.8 3E-18 1E-22 161.3 16.5 146 368-514 22-176 (229)
20 2z62_A TOLL-like receptor 4, v 99.8 2.2E-18 7.4E-23 167.0 13.3 180 328-514 46-241 (276)
21 2v70_A SLIT-2, SLIT homolog 2 99.8 6.9E-18 2.4E-22 157.7 15.5 147 368-515 14-171 (220)
22 4fcg_A Uncharacterized protein 99.8 2.4E-18 8.2E-23 171.0 12.7 181 326-514 96-294 (328)
23 2z81_A CD282 antigen, TOLL-lik 99.7 1.3E-17 4.5E-22 177.5 17.2 183 326-514 326-514 (549)
24 2z66_A Variable lymphocyte rec 99.7 6.4E-18 2.2E-22 166.2 12.8 181 327-515 71-266 (306)
25 3zyj_A Leucine-rich repeat-con 99.7 1.9E-17 6.6E-22 171.4 15.5 181 326-513 80-271 (440)
26 2o6q_A Variable lymphocyte rec 99.7 1.2E-16 4.2E-21 154.1 19.6 146 368-513 40-197 (270)
27 1h6u_A Internalin H; cell adhe 99.7 1.3E-17 4.3E-22 164.3 12.8 171 330-513 59-233 (308)
28 1h6t_A Internalin B; cell adhe 99.7 1.7E-17 5.7E-22 162.1 13.3 173 330-515 42-218 (291)
29 1p9a_G Platelet glycoprotein I 99.7 5.3E-17 1.8E-21 158.3 16.7 169 331-511 7-186 (290)
30 1ozn_A Reticulon 4 receptor; N 99.7 5E-17 1.7E-21 158.1 16.5 174 333-513 31-217 (285)
31 3zyi_A Leucine-rich repeat-con 99.7 2.2E-17 7.4E-22 171.6 14.8 181 326-513 91-282 (452)
32 2xot_A Amphoterin-induced prot 99.7 1.7E-17 5.9E-22 167.1 13.1 148 368-515 42-207 (361)
33 2o6s_A Variable lymphocyte rec 99.7 1.7E-16 5.9E-21 146.8 17.7 146 368-514 10-165 (208)
34 1xeu_A Internalin C; cellular 99.7 2.5E-17 8.5E-22 158.3 12.2 141 368-513 44-188 (263)
35 2z66_A Variable lymphocyte rec 99.7 3.4E-17 1.2E-21 160.9 13.1 182 326-514 44-240 (306)
36 1h6u_A Internalin H; cell adhe 99.7 8.7E-17 3E-21 158.3 15.8 172 329-513 36-211 (308)
37 3m19_A Variable lymphocyte rec 99.7 2.2E-16 7.7E-21 150.6 18.1 145 368-513 17-171 (251)
38 3v47_A TOLL-like receptor 5B a 99.7 7.4E-17 2.5E-21 167.6 15.5 128 387-514 275-412 (455)
39 2xwt_C Thyrotropin receptor; s 99.7 3.9E-17 1.3E-21 154.6 11.5 171 335-513 32-221 (239)
40 1ogq_A PGIP-2, polygalacturona 99.7 9E-18 3.1E-22 165.8 7.3 179 326-512 93-283 (313)
41 2id5_A Lingo-1, leucine rich r 99.7 4.6E-17 1.6E-21 170.3 12.7 148 368-515 179-338 (477)
42 2z80_A TOLL-like receptor 2, v 99.7 2.2E-17 7.6E-22 165.8 9.7 181 327-514 93-318 (353)
43 3oja_B Anopheles plasmodium-re 99.7 1.1E-16 3.6E-21 172.4 15.5 143 368-511 126-292 (597)
44 3o6n_A APL1; leucine-rich repe 99.7 1.4E-16 4.9E-21 162.1 15.5 143 368-511 120-286 (390)
45 3oja_A Leucine-rich immune mol 99.7 1.7E-17 5.9E-22 173.8 8.4 185 326-514 50-254 (487)
46 3rfs_A Internalin B, repeat mo 99.7 3E-16 1E-20 151.6 16.3 144 368-513 44-197 (272)
47 1m9s_A Internalin B; cell inva 99.7 1.3E-16 4.5E-21 170.7 15.1 172 330-514 39-214 (605)
48 1ziw_A TOLL-like receptor 3; i 99.7 1.1E-16 3.9E-21 174.8 14.9 189 327-515 398-627 (680)
49 3o53_A Protein LRIM1, AGAP0063 99.7 3.2E-17 1.1E-21 162.1 9.4 185 326-514 50-254 (317)
50 4ezg_A Putative uncharacterize 99.7 1.8E-16 6.3E-21 145.3 13.8 140 368-511 47-195 (197)
51 1ogq_A PGIP-2, polygalacturona 99.7 3.3E-17 1.1E-21 161.7 8.9 180 326-513 68-260 (313)
52 4fcg_A Uncharacterized protein 99.7 1.3E-16 4.5E-21 158.5 12.4 173 333-514 80-270 (328)
53 3oja_B Anopheles plasmodium-re 99.7 1.6E-16 5.4E-21 170.9 13.5 182 326-514 115-362 (597)
54 1h6t_A Internalin B; cell adhe 99.7 2.9E-16 9.9E-21 153.2 14.0 141 368-512 49-193 (291)
55 1xku_A Decorin; proteoglycan, 99.7 2E-16 6.8E-21 157.2 12.8 145 368-514 124-280 (330)
56 4fmz_A Internalin; leucine ric 99.7 3.8E-16 1.3E-20 156.2 14.9 145 368-514 180-328 (347)
57 2z7x_B TOLL-like receptor 1, v 99.7 2E-16 6.8E-21 167.3 13.5 148 368-515 327-486 (520)
58 1wwl_A Monocyte differentiatio 99.7 1.2E-16 4.2E-21 157.6 10.7 173 332-512 93-289 (312)
59 2pl2_A Hypothetical conserved 99.7 1.9E-15 6.6E-20 140.6 18.2 187 28-239 9-203 (217)
60 3o6n_A APL1; leucine-rich repe 99.7 2.7E-16 9.3E-21 160.0 13.5 183 326-515 109-357 (390)
61 3vtx_A MAMA; tetratricopeptide 99.7 1.7E-15 5.8E-20 136.5 17.3 163 31-220 12-174 (184)
62 3vq2_A TLR4, TOLL-like recepto 99.7 1.7E-16 5.8E-21 171.1 12.6 180 327-515 369-563 (606)
63 1wwl_A Monocyte differentiatio 99.7 1E-16 3.5E-21 158.1 9.7 174 331-512 118-311 (312)
64 2ft3_A Biglycan; proteoglycan, 99.7 3.2E-16 1.1E-20 155.9 13.3 143 368-513 126-280 (332)
65 4fmz_A Internalin; leucine ric 99.7 3.1E-16 1.1E-20 156.8 13.1 168 330-510 173-346 (347)
66 3rgz_A Protein brassinosteroid 99.7 2.8E-16 9.4E-21 174.1 13.6 78 368-445 469-550 (768)
67 3t6q_A CD180 antigen; protein- 99.7 1.4E-16 4.7E-21 171.8 10.4 147 368-515 403-565 (606)
68 2id5_A Lingo-1, leucine rich r 99.7 6E-16 2.1E-20 161.8 14.3 145 368-512 107-287 (477)
69 3rgz_A Protein brassinosteroid 99.7 2.8E-16 9.7E-21 174.0 12.2 146 368-513 493-720 (768)
70 2z62_A TOLL-like receptor 4, v 99.7 5.9E-16 2E-20 149.7 12.8 172 334-513 28-216 (276)
71 1xku_A Decorin; proteoglycan, 99.7 1.1E-15 3.7E-20 151.9 15.0 182 327-512 93-308 (330)
72 2wfh_A SLIT homolog 2 protein 99.6 1.5E-15 5.2E-20 138.7 14.4 130 368-515 13-144 (193)
73 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.1E-15 3.9E-20 163.2 15.7 148 368-515 356-515 (562)
74 3o53_A Protein LRIM1, AGAP0063 99.6 4.9E-16 1.7E-20 153.6 11.6 178 326-511 26-228 (317)
75 2z63_A TOLL-like receptor 4, v 99.6 5.9E-16 2E-20 165.4 13.1 178 331-515 344-536 (570)
76 1m9s_A Internalin B; cell inva 99.6 6.3E-16 2.2E-20 165.5 12.6 141 368-512 46-190 (605)
77 4glp_A Monocyte differentiatio 99.6 4E-16 1.4E-20 153.7 10.2 173 331-511 114-308 (310)
78 3oja_A Leucine-rich immune mol 99.6 5.7E-16 1.9E-20 162.3 11.6 172 332-511 32-228 (487)
79 1ziw_A TOLL-like receptor 3; i 99.6 1.9E-15 6.7E-20 165.0 16.3 180 334-513 381-600 (680)
80 2ft3_A Biglycan; proteoglycan, 99.6 1.4E-15 4.7E-20 151.3 13.4 139 368-510 150-307 (332)
81 3v47_A TOLL-like receptor 5B a 99.6 1.2E-15 4E-20 158.5 13.3 93 327-426 72-169 (455)
82 2xot_A Amphoterin-induced prot 99.6 3E-15 1E-19 150.7 15.7 145 368-513 21-179 (361)
83 4eco_A Uncharacterized protein 99.6 5.4E-16 1.8E-20 168.0 10.2 180 326-510 265-470 (636)
84 2z80_A TOLL-like receptor 2, v 99.6 5.7E-16 1.9E-20 155.5 9.6 173 334-513 52-238 (353)
85 1o6v_A Internalin A; bacterial 99.6 3.8E-15 1.3E-19 155.3 15.7 140 368-511 246-389 (466)
86 1w8a_A SLIT protein; signaling 99.6 4.6E-15 1.6E-19 135.4 14.1 131 368-515 11-144 (192)
87 2xwt_C Thyrotropin receptor; s 99.6 1.2E-15 4.2E-20 144.2 10.5 170 327-508 48-237 (239)
88 1o6v_A Internalin A; bacterial 99.6 3E-15 1E-19 156.1 14.4 173 329-514 194-370 (466)
89 3bz5_A Internalin-J, INLJ; leu 99.6 1.3E-14 4.4E-19 150.6 18.9 166 329-512 37-227 (457)
90 4ezg_A Putative uncharacterize 99.6 1.3E-15 4.6E-20 139.5 10.1 149 330-487 40-195 (197)
91 4ecn_A Leucine-rich repeat pro 99.6 3.6E-15 1.2E-19 165.3 15.4 181 326-510 507-710 (876)
92 1xeu_A Internalin C; cellular 99.6 1.2E-15 4.1E-20 146.6 9.8 140 369-512 23-165 (263)
93 3vq2_A TLR4, TOLL-like recepto 99.6 2.4E-15 8.2E-20 162.0 13.3 144 368-511 379-535 (606)
94 2o6s_A Variable lymphocyte rec 99.6 5.4E-15 1.9E-19 136.6 13.8 140 368-514 31-182 (208)
95 4glp_A Monocyte differentiatio 99.6 1.8E-15 6E-20 149.1 10.6 173 332-512 89-287 (310)
96 4ecn_A Leucine-rich repeat pro 99.6 2.9E-15 9.8E-20 166.1 13.4 142 368-510 451-632 (876)
97 3cvr_A Invasion plasmid antige 99.6 9.6E-15 3.3E-19 154.8 16.5 135 368-513 103-246 (571)
98 4g8a_A TOLL-like receptor 4; l 99.6 6.9E-15 2.4E-19 158.9 15.7 145 368-512 55-216 (635)
99 3t6q_A CD180 antigen; protein- 99.6 5.5E-15 1.9E-19 159.2 14.3 144 368-512 379-538 (606)
100 3vtx_A MAMA; tetratricopeptide 99.6 7.1E-15 2.4E-19 132.3 12.3 172 56-264 2-173 (184)
101 3cvr_A Invasion plasmid antige 99.6 2.2E-14 7.4E-19 152.0 17.6 161 327-511 47-221 (571)
102 4g8a_A TOLL-like receptor 4; l 99.6 8.3E-15 2.8E-19 158.3 14.5 148 368-515 423-585 (635)
103 2o6r_A Variable lymphocyte rec 99.6 2.5E-14 8.6E-19 128.6 15.2 130 368-514 10-141 (177)
104 4eco_A Uncharacterized protein 99.6 1.1E-15 3.9E-20 165.4 7.5 180 326-511 198-416 (636)
105 2ell_A Acidic leucine-rich nuc 99.6 7.7E-15 2.6E-19 130.7 11.3 126 386-511 23-161 (168)
106 3bz5_A Internalin-J, INLJ; leu 99.6 4.4E-14 1.5E-18 146.6 18.4 164 330-512 81-248 (457)
107 2v9t_B SLIT homolog 2 protein 99.6 2.5E-14 8.4E-19 133.5 14.6 120 368-487 35-166 (220)
108 4i17_A Hypothetical protein; T 99.6 1.2E-13 4.1E-18 128.9 19.0 191 26-231 9-224 (228)
109 1jl5_A Outer protein YOPM; leu 99.6 8.1E-14 2.8E-18 144.5 18.3 157 334-510 111-270 (454)
110 2je0_A Acidic leucine-rich nuc 99.6 1.3E-14 4.3E-19 126.6 10.0 121 386-506 16-149 (149)
111 4gyw_A UDP-N-acetylglucosamine 99.5 5E-14 1.7E-18 153.6 16.8 165 28-219 13-177 (723)
112 3e6j_A Variable lymphocyte rec 99.5 8E-14 2.7E-18 130.9 15.6 121 368-488 43-174 (229)
113 3j0a_A TOLL-like receptor 5; m 99.5 5.9E-15 2E-19 165.1 8.6 145 368-512 317-519 (844)
114 2z81_A CD282 antigen, TOLL-lik 99.5 1.1E-14 3.7E-19 154.9 10.0 172 334-512 26-211 (549)
115 2v70_A SLIT-2, SLIT homolog 2 99.5 5.7E-14 1.9E-18 131.0 13.3 121 368-488 35-168 (220)
116 3g06_A SSPH2 (leucine-rich rep 99.5 1.4E-13 4.7E-18 147.6 17.7 135 368-513 164-300 (622)
117 4gyw_A UDP-N-acetylglucosamine 99.5 8.3E-14 2.8E-18 151.9 16.1 160 54-239 4-163 (723)
118 2z7x_B TOLL-like receptor 1, v 99.5 4.9E-14 1.7E-18 148.9 13.2 145 368-513 305-460 (520)
119 1a9n_A U2A', U2A'; complex (nu 99.5 9.4E-15 3.2E-19 131.3 6.2 126 383-510 15-153 (176)
120 1jl5_A Outer protein YOPM; leu 99.5 7.3E-14 2.5E-18 144.8 13.6 116 388-511 132-251 (454)
121 2z63_A TOLL-like receptor 4, v 99.5 6.2E-14 2.1E-18 149.7 13.5 143 368-510 31-190 (570)
122 1w3b_A UDP-N-acetylglucosamine 99.5 9.9E-14 3.4E-18 140.3 14.2 168 42-235 84-251 (388)
123 2pzi_A Probable serine/threoni 99.5 8.5E-14 2.9E-18 151.9 14.1 172 36-235 403-582 (681)
124 1w3b_A UDP-N-acetylglucosamine 99.5 1.7E-13 5.9E-18 138.5 15.2 181 32-239 109-289 (388)
125 2pl2_A Hypothetical conserved 99.5 3.8E-14 1.3E-18 131.8 9.1 170 56-263 2-182 (217)
126 4gco_A Protein STI-1; structur 99.5 1.3E-13 4.6E-18 116.4 11.5 123 49-185 3-125 (126)
127 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.6E-13 5.3E-18 146.5 14.6 138 369-509 35-181 (562)
128 3j0a_A TOLL-like receptor 5; m 99.5 2.3E-13 8E-18 152.1 16.6 170 334-510 266-464 (844)
129 4eqf_A PEX5-related protein; a 99.5 8.8E-14 3E-18 139.3 11.2 186 27-239 68-265 (365)
130 3urz_A Uncharacterized protein 99.5 3E-13 1E-17 124.8 13.7 174 26-227 6-196 (208)
131 2ca6_A RAN GTPase-activating p 99.5 7.1E-15 2.4E-19 149.3 2.3 179 328-513 88-319 (386)
132 4abn_A Tetratricopeptide repea 99.5 2.8E-13 9.6E-18 141.4 14.3 185 31-239 109-310 (474)
133 3g06_A SSPH2 (leucine-rich rep 99.5 1.1E-12 3.8E-17 140.6 18.5 112 368-489 84-197 (622)
134 4eqf_A PEX5-related protein; a 99.5 1.4E-13 4.7E-18 137.9 10.7 194 32-263 107-312 (365)
135 3hym_B Cell division cycle pro 99.5 1.2E-12 4E-17 128.3 17.2 193 34-263 100-301 (330)
136 2q7f_A YRRB protein; TPR, prot 99.5 2.1E-13 7.3E-18 127.7 11.1 179 34-239 33-211 (243)
137 2q7f_A YRRB protein; TPR, prot 99.4 5.2E-12 1.8E-16 118.1 18.7 174 31-231 64-237 (243)
138 3hym_B Cell division cycle pro 99.4 4.9E-12 1.7E-16 123.9 19.3 186 27-239 25-211 (330)
139 3ieg_A DNAJ homolog subfamily 99.4 1.2E-12 4.1E-17 129.6 14.7 186 27-239 6-206 (359)
140 3uq3_A Heat shock protein STI1 99.4 5.9E-13 2E-17 125.5 11.8 185 27-239 8-225 (258)
141 4gco_A Protein STI-1; structur 99.4 3.8E-13 1.3E-17 113.7 9.3 122 94-231 4-125 (126)
142 2ell_A Acidic leucine-rich nuc 99.4 2.7E-13 9.3E-18 120.6 8.7 121 368-490 27-164 (168)
143 3goz_A Leucine-rich repeat-con 99.4 1.2E-13 4E-18 139.1 6.4 141 368-508 83-264 (362)
144 3u4t_A TPR repeat-containing p 99.4 4.2E-12 1.4E-16 121.1 16.3 180 28-236 7-191 (272)
145 4ay9_X Follicle-stimulating ho 99.4 7.8E-13 2.7E-17 132.4 11.2 167 328-499 48-228 (350)
146 1fch_A Peroxisomal targeting s 99.4 2.5E-12 8.4E-17 128.4 14.8 182 34-239 74-303 (368)
147 4ay9_X Follicle-stimulating ho 99.4 3.4E-13 1.1E-17 135.1 8.3 171 334-512 30-217 (350)
148 3g39_A Variable lymphocyte rec 99.4 2.4E-12 8E-17 114.8 12.7 77 368-445 12-90 (170)
149 3ieg_A DNAJ homolog subfamily 99.4 7.6E-12 2.6E-16 123.8 17.6 195 31-263 127-337 (359)
150 2ca6_A RAN GTPase-activating p 99.4 1.6E-13 5.3E-18 139.4 5.1 144 368-511 97-288 (386)
151 2ho1_A Type 4 fimbrial biogene 99.4 1.5E-11 5.1E-16 116.0 18.4 188 25-239 38-227 (252)
152 2y4t_A DNAJ homolog subfamily 99.4 2E-12 7E-17 132.9 13.2 187 26-239 28-229 (450)
153 2ast_B S-phase kinase-associat 99.4 9.4E-14 3.2E-18 138.0 2.8 174 331-512 90-286 (336)
154 4ga2_A E3 SUMO-protein ligase 99.4 2.7E-12 9.3E-17 111.8 11.5 133 42-188 14-147 (150)
155 4b8c_D Glucose-repressible alc 99.4 1.5E-13 5.1E-18 150.6 4.1 123 370-493 206-336 (727)
156 4ga2_A E3 SUMO-protein ligase 99.4 1.2E-12 4E-17 114.1 8.8 136 85-236 13-149 (150)
157 2r9u_A Variable lymphocyte rec 99.4 4.9E-12 1.7E-16 113.2 12.7 103 368-488 15-120 (174)
158 3goz_A Leucine-rich repeat-con 99.4 2.8E-13 9.6E-18 136.3 4.9 187 326-514 14-242 (362)
159 2ast_B S-phase kinase-associat 99.4 2.6E-13 9E-18 134.8 4.5 178 326-513 110-309 (336)
160 3cv0_A Peroxisome targeting si 99.3 4.4E-12 1.5E-16 124.0 12.5 180 31-237 28-222 (327)
161 2vq2_A PILW, putative fimbrial 99.3 5.8E-11 2E-15 109.2 19.4 185 28-238 12-199 (225)
162 4abn_A Tetratricopeptide repea 99.3 1.4E-12 4.9E-17 136.0 9.3 192 42-263 85-289 (474)
163 1a9n_A U2A', U2A'; complex (nu 99.3 7.5E-13 2.6E-17 118.8 6.0 119 368-488 22-155 (176)
164 2y4t_A DNAJ homolog subfamily 99.3 8.8E-12 3E-16 128.1 14.9 182 31-239 150-347 (450)
165 1fch_A Peroxisomal targeting s 99.3 3.5E-11 1.2E-15 120.0 18.8 191 32-239 106-348 (368)
166 3uq3_A Heat shock protein STI1 99.3 1.3E-11 4.4E-16 116.2 14.8 179 31-229 45-255 (258)
167 4i17_A Hypothetical protein; T 99.3 1.4E-11 4.6E-16 114.8 14.6 154 56-235 4-167 (228)
168 2je0_A Acidic leucine-rich nuc 99.3 1.1E-12 3.9E-17 114.0 6.7 113 368-482 20-149 (149)
169 2xpi_A Anaphase-promoting comp 99.3 1.5E-11 5.2E-16 131.3 16.5 180 33-239 382-568 (597)
170 3as5_A MAMA; tetratricopeptide 99.3 3.3E-11 1.1E-15 107.0 16.2 167 31-224 15-181 (186)
171 3cv0_A Peroxisome targeting si 99.3 7.4E-12 2.5E-16 122.4 12.7 181 32-239 63-258 (327)
172 4b8c_D Glucose-repressible alc 99.3 1.6E-12 5.4E-17 142.5 8.6 143 368-512 176-331 (727)
173 2ond_A Cleavage stimulation fa 99.3 3.6E-11 1.2E-15 117.8 17.2 179 42-239 33-221 (308)
174 1ds9_A Outer arm dynein; leuci 99.3 4.7E-15 1.6E-19 136.0 -10.9 142 368-513 26-188 (198)
175 2ho1_A Type 4 fimbrial biogene 99.3 1.4E-10 4.9E-15 109.1 18.5 167 34-227 81-249 (252)
176 3u4t_A TPR repeat-containing p 99.3 4.5E-11 1.5E-15 113.9 14.9 183 35-234 48-268 (272)
177 3gyz_A Chaperone protein IPGC; 99.3 1.7E-11 5.7E-16 106.9 10.5 128 27-175 11-138 (151)
178 2vq2_A PILW, putative fimbrial 99.3 1.6E-10 5.6E-15 106.2 17.7 169 33-228 51-223 (225)
179 2xpi_A Anaphase-promoting comp 99.3 1.3E-10 4.5E-15 124.0 19.5 173 33-232 416-595 (597)
180 2wfh_A SLIT homolog 2 protein 99.3 3.1E-11 1.1E-15 109.9 12.5 103 368-486 34-139 (193)
181 1z7x_W Ribonuclease inhibitor; 99.3 7.9E-13 2.7E-17 137.3 1.8 146 368-513 230-414 (461)
182 4g1t_A Interferon-induced prot 99.3 2.8E-11 9.7E-16 125.3 13.4 186 33-239 60-265 (472)
183 2ond_A Cleavage stimulation fa 99.3 1.1E-10 3.8E-15 114.3 16.8 171 42-238 81-258 (308)
184 1z7x_W Ribonuclease inhibitor; 99.3 4.1E-13 1.4E-17 139.4 -0.8 126 387-512 199-356 (461)
185 3qky_A Outer membrane assembly 99.3 3.1E-10 1E-14 108.0 19.2 185 26-224 17-232 (261)
186 1w8a_A SLIT protein; signaling 99.3 3.7E-11 1.3E-15 109.3 12.2 97 368-464 32-139 (192)
187 2gw1_A Mitochondrial precursor 99.3 2.2E-11 7.4E-16 127.2 12.1 202 33-263 246-480 (514)
188 2r9u_A Variable lymphocyte rec 99.2 4.7E-11 1.6E-15 106.8 12.5 107 389-514 14-122 (174)
189 3g39_A Variable lymphocyte rec 99.2 4.8E-11 1.7E-15 106.2 12.5 108 388-514 10-119 (170)
190 2vsy_A XCC0866; transferase, g 99.2 9E-11 3.1E-15 125.2 16.8 163 42-227 6-168 (568)
191 3fp2_A TPR repeat-containing p 99.2 5.4E-11 1.8E-15 125.1 14.9 195 42-263 293-493 (537)
192 2pzi_A Probable serine/threoni 99.2 6.2E-11 2.1E-15 129.2 15.2 165 29-213 438-602 (681)
193 1ds9_A Outer arm dynein; leuci 99.2 5.7E-14 2E-18 128.7 -7.6 95 369-464 52-153 (198)
194 3gyz_A Chaperone protein IPGC; 99.2 1.1E-11 3.7E-16 108.1 7.1 118 88-221 21-138 (151)
195 1xnf_A Lipoprotein NLPI; TPR, 99.2 3E-10 1E-14 108.1 17.3 167 42-235 22-192 (275)
196 2o6r_A Variable lymphocyte rec 99.2 1.5E-10 5.3E-15 103.6 13.7 106 368-489 31-140 (177)
197 3mkr_A Coatomer subunit epsilo 99.2 4.4E-10 1.5E-14 109.2 18.0 171 37-238 77-251 (291)
198 3urz_A Uncharacterized protein 99.2 1.4E-11 4.8E-16 113.5 6.7 171 58-264 3-189 (208)
199 1xnf_A Lipoprotein NLPI; TPR, 99.2 1.4E-09 4.8E-14 103.4 20.9 182 27-224 46-252 (275)
200 2gw1_A Mitochondrial precursor 99.2 2.8E-10 9.7E-15 118.6 17.4 171 34-231 314-493 (514)
201 2vgx_A Chaperone SYCD; alterna 99.2 1.5E-10 5.1E-15 100.5 12.5 123 47-183 9-131 (148)
202 2hr2_A Hypothetical protein; a 99.2 4.6E-11 1.6E-15 103.7 8.2 106 104-225 12-140 (159)
203 3fp2_A TPR repeat-containing p 99.2 4.4E-10 1.5E-14 118.0 17.3 160 42-228 260-419 (537)
204 3mkr_A Coatomer subunit epsilo 99.2 6.9E-10 2.4E-14 107.8 16.9 164 33-226 110-274 (291)
205 4g1t_A Interferon-induced prot 99.2 5.8E-10 2E-14 115.4 17.1 188 42-263 230-461 (472)
206 2xcb_A PCRH, regulatory protei 99.1 2E-10 6.8E-15 98.7 10.8 129 46-188 5-133 (142)
207 2vgx_A Chaperone SYCD; alterna 99.1 1.5E-10 5E-15 100.5 10.0 124 90-229 8-131 (148)
208 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.9E-09 6.3E-14 100.3 18.1 173 27-223 7-220 (225)
209 2ifg_A High affinity nerve gro 99.1 1.4E-10 4.6E-15 115.8 10.7 107 390-515 11-121 (347)
210 2hr2_A Hypothetical protein; a 99.1 3.3E-10 1.1E-14 98.2 11.2 108 22-143 9-139 (159)
211 3sb4_A Hypothetical leucine ri 99.1 3.1E-10 1E-14 112.4 11.5 142 368-512 104-312 (329)
212 1p5q_A FKBP52, FK506-binding p 99.1 2.2E-10 7.6E-15 113.8 10.1 133 42-188 130-277 (336)
213 3upv_A Heat shock protein STI1 99.1 9E-10 3.1E-14 92.1 12.2 118 56-187 1-124 (126)
214 3sz7_A HSC70 cochaperone (SGT) 99.1 1.3E-09 4.3E-14 95.9 12.6 117 55-185 7-123 (164)
215 2xcb_A PCRH, regulatory protei 99.1 2.1E-10 7.2E-15 98.5 7.4 125 90-230 5-129 (142)
216 3sb4_A Hypothetical leucine ri 99.0 4.8E-10 1.7E-14 110.9 10.3 93 410-504 225-328 (329)
217 3un9_A NLR family member X1; l 99.0 7.4E-12 2.5E-16 126.1 -3.1 176 332-510 70-283 (372)
218 2r5s_A Uncharacterized protein 99.0 5.3E-10 1.8E-14 99.7 9.2 161 28-215 10-172 (176)
219 3upv_A Heat shock protein STI1 99.0 6.9E-10 2.3E-14 92.8 8.9 117 100-232 1-123 (126)
220 3as5_A MAMA; tetratricopeptide 99.0 2.2E-09 7.5E-14 95.1 12.3 156 58-239 7-162 (186)
221 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 3.9E-10 1.3E-14 116.9 8.2 133 42-188 251-398 (457)
222 2r5s_A Uncharacterized protein 99.0 6.2E-10 2.1E-14 99.3 8.2 158 55-239 2-162 (176)
223 3sz7_A HSC70 cochaperone (SGT) 99.0 1.5E-09 5E-14 95.5 10.4 116 99-230 7-122 (164)
224 2ifg_A High affinity nerve gro 99.0 5.6E-10 1.9E-14 111.3 8.5 98 368-465 11-117 (347)
225 1qqe_A Vesicular transport pro 99.0 6.5E-09 2.2E-13 100.8 15.3 166 34-226 47-238 (292)
226 3qou_A Protein YBBN; thioredox 99.0 3.5E-09 1.2E-13 102.5 13.4 163 26-215 119-283 (287)
227 1zu2_A Mitochondrial import re 99.0 4.5E-09 1.5E-13 90.9 12.2 99 42-140 19-125 (158)
228 3un9_A NLR family member X1; l 99.0 3.2E-11 1.1E-15 121.4 -1.5 147 368-514 75-256 (372)
229 3qou_A Protein YBBN; thioredox 99.0 5.1E-09 1.7E-13 101.4 13.9 174 38-239 98-273 (287)
230 2e2e_A Formate-dependent nitri 99.0 3.8E-09 1.3E-13 93.9 11.8 128 85-228 26-156 (177)
231 3qky_A Outer membrane assembly 99.0 9E-09 3.1E-13 97.7 15.0 157 52-234 8-198 (261)
232 2ooe_A Cleavage stimulation fa 99.0 4.6E-09 1.6E-13 110.8 13.9 179 42-239 255-443 (530)
233 2fo7_A Synthetic consensus TPR 98.9 2.5E-08 8.6E-13 82.9 15.6 135 60-220 2-136 (136)
234 2ooe_A Cleavage stimulation fa 98.9 2.8E-08 9.4E-13 104.9 19.3 174 37-236 292-478 (530)
235 2c2l_A CHIP, carboxy terminus 98.9 7.6E-09 2.6E-13 99.8 13.5 175 27-233 7-181 (281)
236 2e2e_A Formate-dependent nitri 98.9 7.3E-09 2.5E-13 92.0 11.8 127 37-178 23-152 (177)
237 3ogk_B Coronatine-insensitive 98.9 4E-10 1.4E-14 120.7 3.1 147 368-514 345-530 (592)
238 1hxi_A PEX5, peroxisome target 98.9 1.2E-08 4.2E-13 84.9 10.8 103 103-221 17-119 (121)
239 2yhc_A BAMD, UPF0169 lipoprote 98.9 4E-08 1.4E-12 91.2 15.1 155 59-239 4-202 (225)
240 2fo7_A Synthetic consensus TPR 98.9 1.1E-07 3.6E-12 79.0 16.2 127 33-174 10-136 (136)
241 1p5q_A FKBP52, FK506-binding p 98.9 2.9E-08 9.9E-13 98.4 14.7 132 24-169 147-293 (336)
242 1a17_A Serine/threonine protei 98.8 7.4E-08 2.5E-12 83.8 15.6 135 58-216 12-146 (166)
243 2lni_A Stress-induced-phosphop 98.8 1E-08 3.5E-13 85.6 9.5 120 98-233 11-130 (133)
244 2lni_A Stress-induced-phosphop 98.8 2.4E-08 8.1E-13 83.3 11.8 120 55-188 12-131 (133)
245 1a17_A Serine/threonine protei 98.8 8.3E-08 2.8E-12 83.4 15.6 129 26-169 15-145 (166)
246 2vsy_A XCC0866; transferase, g 98.8 4.3E-08 1.5E-12 104.4 16.2 141 27-182 26-169 (568)
247 3rkv_A Putative peptidylprolyl 98.8 2.2E-08 7.4E-13 87.7 11.6 117 21-151 8-143 (162)
248 1hxi_A PEX5, peroxisome target 98.8 2.5E-08 8.5E-13 83.0 10.9 96 31-140 24-119 (121)
249 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.1E-07 3.9E-12 86.6 16.2 131 28-176 10-156 (213)
250 2vyi_A SGTA protein; chaperone 98.8 4.2E-08 1.4E-12 81.2 12.0 122 53-188 6-127 (131)
251 2vyi_A SGTA protein; chaperone 98.8 1.4E-08 4.8E-13 84.2 8.7 123 98-236 7-129 (131)
252 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5E-08 1.7E-12 89.1 13.2 135 61-224 8-158 (213)
253 3q49_B STIP1 homology and U bo 98.8 2.2E-08 7.5E-13 84.5 9.9 119 97-231 3-126 (137)
254 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 3.2E-08 1.1E-12 102.4 13.1 119 23-155 267-400 (457)
255 3q49_B STIP1 homology and U bo 98.8 5.2E-08 1.8E-12 82.1 12.2 107 53-173 3-109 (137)
256 2if4_A ATFKBP42; FKBP-like, al 98.8 1.5E-08 5.3E-13 100.5 10.1 137 25-175 180-333 (338)
257 3nf1_A KLC 1, kinesin light ch 98.8 6.1E-09 2.1E-13 100.6 6.2 181 27-234 30-251 (311)
258 2kck_A TPR repeat; tetratricop 98.8 3.5E-08 1.2E-12 79.4 9.8 108 54-175 1-111 (112)
259 3rkv_A Putative peptidylprolyl 98.7 4.8E-08 1.6E-12 85.5 10.9 117 58-188 10-145 (162)
260 1elw_A TPR1-domain of HOP; HOP 98.7 1.5E-07 5E-12 76.4 13.1 114 58-185 3-116 (118)
261 1wao_1 Serine/threonine protei 98.7 1.2E-08 4E-13 106.3 7.6 131 36-181 18-161 (477)
262 1wao_1 Serine/threonine protei 98.7 3.1E-09 1E-13 110.7 3.0 126 85-226 22-160 (477)
263 2dba_A Smooth muscle cell asso 98.7 7.5E-08 2.6E-12 82.0 11.3 121 97-233 22-145 (148)
264 4gcn_A Protein STI-1; structur 98.7 5.1E-08 1.8E-12 81.8 9.7 105 56-174 5-116 (127)
265 2fbn_A 70 kDa peptidylprolyl i 98.7 2.8E-07 9.7E-12 83.4 15.3 120 21-154 35-170 (198)
266 2dba_A Smooth muscle cell asso 98.7 1.4E-07 4.7E-12 80.3 12.4 120 53-186 22-144 (148)
267 1qqe_A Vesicular transport pro 98.7 3.7E-08 1.3E-12 95.4 9.8 179 31-231 84-284 (292)
268 2c2l_A CHIP, carboxy terminus 98.7 1.3E-07 4.4E-12 91.2 13.4 147 56-231 1-147 (281)
269 4gcn_A Protein STI-1; structur 98.7 5.2E-08 1.8E-12 81.8 9.1 102 103-220 8-116 (127)
270 1ouv_A Conserved hypothetical 98.7 2.5E-07 8.4E-12 88.2 14.9 167 34-233 16-194 (273)
271 1elw_A TPR1-domain of HOP; HOP 98.7 3.6E-07 1.2E-11 74.0 13.8 110 27-150 7-116 (118)
272 1zu2_A Mitochondrial import re 98.7 5.3E-08 1.8E-12 84.2 8.6 101 79-180 12-130 (158)
273 2kck_A TPR repeat; tetratricop 98.7 2.9E-07 9.8E-12 73.9 12.6 109 98-221 1-111 (112)
274 3ogk_B Coronatine-insensitive 98.7 1.1E-08 3.7E-13 109.5 5.0 150 327-481 157-326 (592)
275 2fbn_A 70 kDa peptidylprolyl i 98.7 3.6E-08 1.2E-12 89.4 7.8 128 47-188 26-169 (198)
276 2if4_A ATFKBP42; FKBP-like, al 98.6 1.2E-08 4E-13 101.4 4.3 145 52-221 172-333 (338)
277 4fdw_A Leucine rich hypothetic 98.6 1.3E-07 4.5E-12 95.9 12.1 137 368-511 206-359 (401)
278 2p1m_B Transport inhibitor res 98.6 4.8E-09 1.6E-13 112.2 1.0 127 385-512 370-521 (594)
279 1na0_A Designed protein CTPR3; 98.6 5.5E-07 1.9E-11 73.6 13.5 119 54-186 3-122 (125)
280 3edt_B KLC 2, kinesin light ch 98.6 2.1E-07 7E-12 88.2 11.7 167 42-234 18-225 (283)
281 1ouv_A Conserved hypothetical 98.6 7.6E-07 2.6E-11 84.7 15.6 164 37-233 55-230 (273)
282 4a1s_A PINS, partner of inscut 98.6 1.2E-07 4E-12 95.9 10.0 191 23-239 47-281 (411)
283 3nf1_A KLC 1, kinesin light ch 98.6 2E-07 6.8E-12 89.8 10.7 159 34-219 79-310 (311)
284 4f3v_A ESX-1 secretion system 98.6 1.7E-07 5.9E-12 89.3 9.9 180 25-225 8-245 (282)
285 1na0_A Designed protein CTPR3; 98.6 3.8E-07 1.3E-11 74.6 10.9 118 99-232 4-122 (125)
286 2p1m_B Transport inhibitor res 98.6 2.7E-08 9.3E-13 106.3 4.7 53 451-504 289-345 (594)
287 3ulq_A Response regulator aspa 98.6 4.1E-07 1.4E-11 91.3 13.0 180 30-236 109-318 (383)
288 1ihg_A Cyclophilin 40; ppiase 98.5 1.6E-07 5.6E-12 94.2 9.1 120 22-155 221-356 (370)
289 3edt_B KLC 2, kinesin light ch 98.5 5.1E-07 1.7E-11 85.4 12.1 128 28-170 47-198 (283)
290 3sf4_A G-protein-signaling mod 98.5 2.4E-07 8.2E-12 93.0 10.3 187 27-239 12-245 (406)
291 2xev_A YBGF; tetratricopeptide 98.5 2E-06 6.7E-11 71.3 13.5 106 31-150 9-120 (129)
292 3k9i_A BH0479 protein; putativ 98.5 1.7E-07 5.9E-12 77.0 6.8 99 42-153 7-108 (117)
293 1ihg_A Cyclophilin 40; ppiase 98.5 6E-07 2E-11 90.1 12.0 117 58-188 222-354 (370)
294 3k9i_A BH0479 protein; putativ 98.5 8.3E-08 2.8E-12 79.0 3.8 100 120-232 4-106 (117)
295 3ro2_A PINS homolog, G-protein 98.4 6.5E-07 2.2E-11 86.8 10.2 188 26-239 7-241 (338)
296 2qfc_A PLCR protein; TPR, HTH, 98.4 6.3E-06 2.2E-10 79.5 17.0 165 25-216 76-266 (293)
297 1elr_A TPR2A-domain of HOP; HO 98.4 1.6E-06 5.6E-11 71.5 11.1 118 56-188 1-125 (131)
298 2xev_A YBGF; tetratricopeptide 98.4 3.4E-06 1.2E-10 69.8 12.7 110 61-184 4-119 (129)
299 4a1s_A PINS, partner of inscut 98.4 4.4E-07 1.5E-11 91.6 8.1 179 34-239 96-321 (411)
300 3u3w_A Transcriptional activat 98.4 6.4E-06 2.2E-10 79.4 15.6 166 24-216 75-266 (293)
301 2ra8_A Uncharacterized protein 98.4 2.3E-07 7.8E-12 92.6 4.6 138 368-508 175-341 (362)
302 3sf4_A G-protein-signaling mod 98.3 6.4E-07 2.2E-11 89.8 7.7 181 32-239 55-285 (406)
303 4fdw_A Leucine rich hypothetic 98.3 2.9E-06 9.9E-11 86.0 11.9 134 368-507 183-333 (401)
304 1elr_A TPR2A-domain of HOP; HO 98.3 2E-06 6.7E-11 71.0 8.5 115 101-232 2-123 (131)
305 2kat_A Uncharacterized protein 98.3 2.3E-06 8E-11 69.7 8.6 87 43-142 3-89 (115)
306 1io0_A Tropomodulin; LRR prote 98.3 2.1E-07 7.2E-12 83.7 1.9 62 451-512 93-166 (185)
307 3ro2_A PINS homolog, G-protein 98.3 1.5E-06 5.3E-11 84.0 8.0 182 31-239 50-281 (338)
308 3q15_A PSP28, response regulat 98.2 2.2E-05 7.5E-10 78.5 15.6 164 29-219 106-293 (378)
309 2ifu_A Gamma-SNAP; membrane fu 98.2 6.3E-06 2.1E-10 80.2 10.9 162 35-225 47-232 (307)
310 2ra8_A Uncharacterized protein 98.2 7.8E-07 2.7E-11 88.7 3.6 129 383-514 168-324 (362)
311 2kat_A Uncharacterized protein 98.1 8.2E-06 2.8E-10 66.4 7.8 87 87-177 3-89 (115)
312 3ma5_A Tetratricopeptide repea 98.1 1E-05 3.6E-10 64.3 8.1 76 54-142 2-77 (100)
313 1na3_A Designed protein CTPR2; 98.1 2E-05 6.9E-10 60.5 9.2 82 58-152 8-89 (91)
314 2kc7_A BFR218_protein; tetratr 98.0 9.2E-06 3.2E-10 64.0 7.1 91 108-222 5-96 (99)
315 3ulq_A Response regulator aspa 98.0 1.2E-05 4.3E-10 80.4 9.7 153 61-239 105-282 (383)
316 1io0_A Tropomodulin; LRR prote 98.0 5.5E-07 1.9E-11 80.9 -0.5 37 451-487 121-165 (185)
317 3rfe_A Platelet glycoprotein I 98.0 9.8E-06 3.4E-10 68.0 7.3 61 454-515 11-73 (130)
318 2l6j_A TPR repeat-containing p 98.0 1.8E-05 6.2E-10 63.3 8.5 83 59-154 4-92 (111)
319 3ma5_A Tetratricopeptide repea 98.0 1.1E-05 3.9E-10 64.0 6.9 77 98-178 2-78 (100)
320 2kc7_A BFR218_protein; tetratr 98.0 2.3E-05 7.8E-10 61.6 8.3 86 32-139 8-94 (99)
321 2qfc_A PLCR protein; TPR, HTH, 98.0 7.6E-05 2.6E-09 71.7 13.4 139 85-239 91-254 (293)
322 1na3_A Designed protein CTPR2; 97.9 2.7E-05 9.1E-10 59.8 7.6 83 101-187 7-89 (91)
323 3rjv_A Putative SEL1 repeat pr 97.9 9E-05 3.1E-09 67.7 12.4 168 41-234 2-175 (212)
324 3rw6_A Nuclear RNA export fact 97.9 1.1E-06 3.9E-11 83.2 -0.5 79 409-503 168-257 (267)
325 2ifu_A Gamma-SNAP; membrane fu 97.9 2.1E-05 7.3E-10 76.3 8.4 141 41-222 32-190 (307)
326 2l6j_A TPR repeat-containing p 97.9 2.9E-05 1E-09 62.0 7.5 84 102-189 3-92 (111)
327 3rw6_A Nuclear RNA export fact 97.8 4.4E-06 1.5E-10 79.1 1.3 61 450-511 169-234 (267)
328 3gw4_A Uncharacterized protein 97.7 0.0001 3.5E-09 65.9 9.5 156 42-224 9-184 (203)
329 3u3w_A Transcriptional activat 97.6 0.00031 1E-08 67.4 11.2 117 41-170 131-266 (293)
330 3rjv_A Putative SEL1 repeat pr 97.5 0.0012 4.1E-08 60.0 13.2 162 37-218 31-199 (212)
331 3ro3_A PINS homolog, G-protein 97.5 0.00044 1.5E-08 58.5 9.4 134 59-218 9-160 (164)
332 3ly7_A Transcriptional activat 97.5 0.0012 4.3E-08 64.8 13.6 129 41-175 215-344 (372)
333 4f3v_A ESX-1 secretion system 97.5 0.00015 5.1E-09 69.0 6.8 133 30-179 108-245 (282)
334 3q15_A PSP28, response regulat 97.5 0.00024 8.3E-09 70.8 8.7 154 60-239 102-279 (378)
335 1hz4_A MALT regulatory protein 97.4 0.0033 1.1E-07 62.1 15.5 157 35-218 25-205 (373)
336 3e4g_A ATP synthase subunit S, 97.4 5.1E-05 1.8E-09 66.7 1.9 60 387-446 61-128 (176)
337 3e4g_A ATP synthase subunit S, 97.3 5.8E-05 2E-09 66.4 1.8 85 404-488 54-155 (176)
338 1xi4_A Clathrin heavy chain; a 97.3 0.0047 1.6E-07 70.2 17.2 185 21-238 1102-1331(1630)
339 3ly7_A Transcriptional activat 97.3 0.0037 1.3E-07 61.4 14.3 163 48-233 183-355 (372)
340 2xm6_A Protein corresponding t 97.2 0.0024 8.3E-08 66.0 13.2 162 41-229 275-448 (490)
341 3ro3_A PINS homolog, G-protein 97.2 0.0015 5E-08 55.2 9.6 127 31-172 16-160 (164)
342 3e4b_A ALGK; tetratricopeptide 97.1 0.0058 2E-07 62.6 14.8 164 44-234 164-331 (452)
343 4fs7_A Uncharacterized protein 97.1 0.0023 7.8E-08 64.3 11.2 120 383-507 249-376 (394)
344 4e6h_A MRNA 3'-END-processing 97.1 0.0036 1.2E-07 67.4 13.1 166 43-233 327-517 (679)
345 2xm6_A Protein corresponding t 97.0 0.024 8.1E-07 58.4 18.3 166 42-233 204-375 (490)
346 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00052 1.8E-08 61.5 4.8 60 451-510 98-170 (197)
347 3e4b_A ALGK; tetratricopeptide 97.0 0.012 4.2E-07 60.1 15.9 169 41-234 195-367 (452)
348 3gw4_A Uncharacterized protein 97.0 0.0047 1.6E-07 54.7 11.1 132 27-173 29-179 (203)
349 4gt6_A Cell surface protein; l 97.0 0.0028 9.5E-08 63.7 10.2 103 404-510 258-370 (394)
350 4h09_A Hypothetical leucine ri 97.0 0.0033 1.1E-07 62.7 10.6 121 383-507 213-343 (379)
351 4h09_A Hypothetical leucine ri 96.8 0.0052 1.8E-07 61.2 10.6 113 383-499 236-358 (379)
352 3mv2_B Coatomer subunit epsilo 96.7 0.013 4.4E-07 56.4 12.0 159 37-226 113-292 (310)
353 3bee_A Putative YFRE protein; 96.7 0.0092 3.2E-07 46.4 8.9 74 55-138 2-75 (93)
354 3rfe_A Platelet glycoprotein I 96.7 0.0027 9.3E-08 52.9 6.1 54 369-423 12-67 (130)
355 1hz4_A MALT regulatory protein 96.6 0.024 8.1E-07 55.8 13.6 152 60-237 15-190 (373)
356 4e6h_A MRNA 3'-END-processing 96.6 0.053 1.8E-06 58.3 16.9 175 37-230 356-550 (679)
357 1pc2_A Mitochondria fission pr 96.5 0.0071 2.4E-07 51.4 7.8 100 88-188 17-118 (152)
358 1xi4_A Clathrin heavy chain; a 96.5 0.054 1.8E-06 61.8 16.9 135 56-236 1102-1236(1630)
359 3bee_A Putative YFRE protein; 96.5 0.018 6E-07 44.7 9.5 67 26-102 10-76 (93)
360 4fs7_A Uncharacterized protein 96.5 0.012 4.1E-07 59.0 10.9 118 387-507 230-353 (394)
361 3u64_A Protein TP_0956; tetrat 96.2 0.22 7.4E-06 47.0 16.8 172 42-225 49-278 (301)
362 3u64_A Protein TP_0956; tetrat 96.2 0.066 2.3E-06 50.5 12.9 157 17-174 103-273 (301)
363 4b4t_Q 26S proteasome regulato 96.1 0.037 1.3E-06 55.4 12.0 167 31-221 11-209 (434)
364 1pgv_A TMD-1, tropomodulin TMD 96.0 0.0031 1.1E-07 56.4 3.0 57 451-507 70-136 (197)
365 1pc2_A Mitochondria fission pr 95.7 0.061 2.1E-06 45.6 9.6 96 47-152 20-117 (152)
366 3mv2_B Coatomer subunit epsilo 95.5 0.098 3.4E-06 50.2 11.3 156 44-227 85-261 (310)
367 4gt6_A Cell surface protein; l 95.0 0.045 1.5E-06 54.7 7.6 120 383-509 261-390 (394)
368 3n71_A Histone lysine methyltr 94.9 0.11 3.7E-06 53.6 10.3 98 25-136 310-423 (490)
369 3qww_A SET and MYND domain-con 94.5 0.16 5.6E-06 51.3 10.5 98 26-137 300-413 (433)
370 1klx_A Cysteine rich protein B 94.0 0.72 2.5E-05 38.1 12.0 115 84-217 10-127 (138)
371 1b89_A Protein (clathrin heavy 93.9 0.1 3.4E-06 52.7 7.1 117 104-237 123-257 (449)
372 1klx_A Cysteine rich protein B 93.7 0.81 2.8E-05 37.7 11.6 112 42-171 12-127 (138)
373 1b89_A Protein (clathrin heavy 93.2 0.16 5.4E-06 51.2 7.2 142 60-238 123-299 (449)
374 3qwp_A SET and MYND domain-con 92.9 0.3 1E-05 49.4 9.0 98 25-136 288-401 (429)
375 2v5f_A Prolyl 4-hydroxylase su 92.4 0.42 1.4E-05 37.4 7.5 70 110-183 12-88 (104)
376 2v5f_A Prolyl 4-hydroxylase su 92.2 0.42 1.4E-05 37.4 7.2 64 85-151 21-91 (104)
377 2uy1_A Cleavage stimulation fa 91.6 4.5 0.00015 41.4 16.2 125 43-179 197-358 (493)
378 4b4t_Q 26S proteasome regulato 91.3 0.82 2.8E-05 45.4 10.1 170 34-217 65-246 (434)
379 1y8m_A FIS1; mitochondria, unk 91.3 3.6 0.00012 34.1 11.9 83 56-152 37-123 (144)
380 2uy1_A Cleavage stimulation fa 89.9 5.3 0.00018 40.9 14.8 187 21-230 11-255 (493)
381 3o48_A Mitochondria fission 1 89.8 3.5 0.00012 33.8 10.4 65 85-152 59-124 (134)
382 1nzn_A CGI-135 protein, fissio 88.0 1.5 5.1E-05 35.7 7.1 95 92-187 24-120 (126)
383 3o48_A Mitochondria fission 1 84.1 1.3 4.4E-05 36.3 4.8 83 104-187 41-124 (134)
384 1nzn_A CGI-135 protein, fissio 81.6 3.3 0.00011 33.6 6.3 91 128-230 23-117 (126)
385 1y8m_A FIS1; mitochondria, unk 81.2 8.8 0.0003 31.8 8.8 87 101-188 37-124 (144)
386 3qww_A SET and MYND domain-con 76.0 3.2 0.00011 41.7 5.7 82 85-170 314-411 (433)
387 3n71_A Histone lysine methyltr 71.4 6.8 0.00023 40.0 6.9 82 85-170 325-422 (490)
388 3qwp_A SET and MYND domain-con 61.3 15 0.00051 36.7 7.0 100 104-216 282-400 (429)
389 2lz0_A Uncharacterized protein 60.1 12 0.0004 28.9 4.7 46 461-507 6-53 (100)
390 4gns_B Protein CSD3, chitin bi 40.6 3.7E+02 0.013 28.8 14.5 122 39-163 263-393 (754)
391 2lz0_A Uncharacterized protein 35.9 53 0.0018 25.1 4.9 44 376-420 7-52 (100)
392 4h7y_A Dual specificity protei 26.9 2.8E+02 0.0095 23.2 11.0 105 23-141 12-129 (161)
393 1ya0_A SMG-7 transcript varian 25.8 2.6E+02 0.009 28.2 9.4 69 120-189 166-234 (497)
394 4gns_B Protein CSD3, chitin bi 20.2 2.5E+02 0.0084 30.1 8.2 45 85-132 353-397 (754)
No 1
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=100.00 E-value=2.1e-75 Score=622.87 Aligned_cols=484 Identities=35% Similarity=0.590 Sum_probs=399.2
Q ss_pred CCCcccCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccc
Q psy13451 1 MHGRKKESVSVQEA----KKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATL 76 (522)
Q Consensus 1 mhg~~~~~~~~~~~----~~~~~k~~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~ 76 (522)
||||+|+++|+|++ +++++|+++|+++++.++++++.|++++||+++|+++|.+||++||||++||.++..++...
T Consensus 1 mhg~~~~~~~~~~~~~~~~~~~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~ 80 (567)
T 1dce_A 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEK 80 (567)
T ss_dssp CCSCBCSSCSTTSSCCSCCCCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhccccc
Confidence 99999999987655 66788999999999999999999999999999999999999999999999999999998866
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCC
Q psy13451 77 AEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVA 156 (522)
Q Consensus 77 ~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~ 156 (522)
+++.....+++||++++.+++.+||+|++|+||+|++.++ +..+|++|+++|+++++.||+|||||+||+|++..++..
T Consensus 81 ~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l-~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~ 159 (567)
T 1dce_A 81 SPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL-PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA 159 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC
T ss_pred chhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC
Confidence 6788889999999999999999999999999999999999 445889999999999999999999999999999999955
Q ss_pred CHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCC--CccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccC
Q psy13451 157 PLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNH--LPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER 234 (522)
Q Consensus 157 ~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~--~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~ 234 (522)
+++|+++++++|+.||+|+||||||+.++..+.....++ ..+..+.+++|++++++||+++|+|+|+|+|+||++.+.
T Consensus 160 ~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence 799999999999999999999999999999986654322 234568999999999999999999999999999999999
Q ss_pred CCcccceecccC-CCceEEEEeccccccccc---ceEeeCCccc-eeee-ecCCCCCcceeeeeccccCC----------
Q psy13451 235 TSPVQIISAGVL-PSGVTFVTFNQLVDLTST---SQIKVDSNVL-MSWT-SLNGASRSFIWVRFLLSLSC---------- 298 (522)
Q Consensus 235 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~w~-~~~~~~~~~~w~~~L~~f~~---------- 298 (522)
++++++.++++. ....|+++|++|+.+++. +.+..++.+. ++|+ +.+....+.+|+..++.-..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~vw~~~~~~~~~~~~~~~~~~~ 319 (567)
T 1dce_A 240 EPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFR 319 (567)
T ss_dssp CCCSCEEEEEEETTTTEEEEEEEEEECTTBTTBCEEEEESSSEECCCCBCTTSSCCSEEEEEEECCGGGTSTTSSEEEEE
T ss_pred CCccceeeeeeccCCceEEEEeccceeccccccceEEeecCcccceeeccCCcccccceeEEeecCccccccccccceEE
Confidence 999888877663 333588999999999875 6777777766 9999 77777888888777641100
Q ss_pred ------------------------------CC--------------------------CccchhHHHHHHHHHHhhCCCC
Q psy13451 299 ------------------------------PY--------------------------RNYISVALLTSITLLQHLHPGS 322 (522)
Q Consensus 299 ------------------------------~~--------------------------~~~~kw~L~~l~~l~~~i~~~~ 322 (522)
++ ..+++|++.++..+....+..+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~ 399 (567)
T 1dce_A 320 VIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399 (567)
T ss_dssp EEETTTTEEEEEEEETTCSEEEEECCSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGG
T ss_pred EeeccCCCCccccccCCCchhhhcccccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhccccc
Confidence 00 0125566666665555555555
Q ss_pred CCChhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCC-cEEEecCCCcccccCcCCCCcccEEEecCCCCCC
Q psy13451 323 SDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN-QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN 401 (522)
Q Consensus 323 ~~~~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~-~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~ 401 (522)
. .+..++.+++|+.||+.+.+.+.++.......+.+..++... +.|++++|.|+++|.+..+++|+.|+|++|.++
T Consensus 400 ~--~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~- 476 (567)
T 1dce_A 400 Y--EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR- 476 (567)
T ss_dssp G--HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-
T ss_pred C--CHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCccccc-
Confidence 5 788889999999998666666666666555545555554444 688888888888888888888888888888888
Q ss_pred cccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc-cCcccEEEcCCCCCCCCCCCCCCCCCCEEEc
Q psy13451 402 NCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL-CVYFQSLKLTHCSLSSLHVFPHLPSLESLDV 480 (522)
Q Consensus 402 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~-~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~L 480 (522)
.+|..|+.+++|+.|+|++|.|+++|+++.+++|+.|++++|.++++. +. .++.+++|+.|+|
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~----------------~l~~l~~L~~L~L 540 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQ----------------PLVSCPRLVLLNL 540 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTG----------------GGGGCTTCCEEEC
T ss_pred ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcH----------------HHhcCCCCCEEEe
Confidence 778888888888888888888888887777888887777777765542 11 1566788888899
Q ss_pred cCCCCCCCCh---hhhcCCCCccEEEe
Q psy13451 481 SHNAIDHIED---SVFAKYEACVQVIL 504 (522)
Q Consensus 481 s~N~l~~~~~---~~l~~l~~L~~L~L 504 (522)
++|.+++.++ ..+..+++|+.|++
T Consensus 541 ~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 541 QGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8888888753 23445788888864
No 2
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=100.00 E-value=2.3e-62 Score=482.17 Aligned_cols=320 Identities=42% Similarity=0.755 Sum_probs=260.9
Q ss_pred CCCcccCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccc
Q psy13451 1 MHGRKKESVSVQEA----KKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATL 76 (522)
Q Consensus 1 mhg~~~~~~~~~~~----~~~~~k~~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~ 76 (522)
||||+|+++|+|++ +++++||++|+.+++.+++.+++|+++++||++|+++|.+||++|||||+||.++..++...
T Consensus 2 mhg~~r~~~~~~~~~~~~~~~~~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~ 81 (331)
T 3dss_A 2 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEK 81 (331)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCcCCCCcHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccc
Confidence 99999999987655 66788999999999999999999999999999999999999999999999999999998866
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCC
Q psy13451 77 AEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVA 156 (522)
Q Consensus 77 ~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~ 156 (522)
++++....+++||.+++.+|..|||+|++|+||+|++..+ +.+.|++|+++|+++++.||+|||||+||+|++..++..
T Consensus 82 ~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l-~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~ 160 (331)
T 3dss_A 82 SPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL-PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA 160 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc-CcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Confidence 6778888899999999999999999999999999999999 545799999999999999999999999999999999985
Q ss_pred CHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCC--CCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccC
Q psy13451 157 PLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNN--HLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER 234 (522)
Q Consensus 157 ~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~--~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~ 234 (522)
+++|+++++++|+.||+|+|||+||++++..+...... ....+.+.+++|++++++||+++|+|+|+|+|++|++.+.
T Consensus 161 ~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 161 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999654322 1234558999999999999999999999999999999887
Q ss_pred CCcccceecccCCCceEEEEecccccccccceEeeCCccceeeeecCCCCCcceeeeeccccCCCCCccchhHHHHHHHH
Q psy13451 235 TSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITL 314 (522)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~L~~f~~~~~~~~kw~L~~l~~l 314 (522)
..........+ + .++++ -.++.++ -+..|+++|++++++.+
T Consensus 241 ~~~~~~~~~~~--------------~-------~l~~e--------------l~~~~el----le~~pd~~w~l~~~~~~ 281 (331)
T 3dss_A 241 SGRCELSVEKS--------------T-------VLQSE--------------LESCKEL----QELEPENKWCLLTIILL 281 (331)
T ss_dssp SCGGGCCHHHH--------------H-------HHHHH--------------HHHHHHH----HHHCTTCHHHHHHHHHH
T ss_pred cCccccchHHH--------------H-------HHHHH--------------HHHHHHH----HhhCcccchHHHHHHHH
Confidence 43221100000 0 00000 0001111 13457899999999999
Q ss_pred HHhhCCCCCCChhHHHHhcccccccCccCcchhhchhhhhhhhccccc
Q psy13451 315 LQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQT 362 (522)
Q Consensus 315 ~~~i~~~~~~~~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~ 362 (522)
...+++.+. ..++...+..|..|||.|.++|.++.+.+.+.+.+.+
T Consensus 282 ~~~~~~~~~--~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~~~~~~~~ 327 (331)
T 3dss_A 282 MRALDPLLY--EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK 327 (331)
T ss_dssp HHHHCTTTT--HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccccc--HHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHh
Confidence 888887776 7899999999999999999999999999888765544
No 3
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=1.2e-47 Score=375.63 Aligned_cols=263 Identities=24% Similarity=0.393 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhh-ccccHHHHHHHHHHHHHHHHHHHHhCC
Q psy13451 22 KWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMK-ATLAEEELHELVDRELKLTKDCLLAQP 100 (522)
Q Consensus 22 ~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~-~~~~~~~~~~~~~~eL~~~~~~l~~~p 100 (522)
++|+++++.+++.+++|+++++||++|+++|.+||++|||||+||.+|..++ .. +++||.+++.+|+.||
T Consensus 30 ~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~---------~~eeL~~~~~~L~~nP 100 (306)
T 3dra_A 30 EDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRN---------LYDELDWCEEIALDNE 100 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSC---------HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccccc---------HHHHHHHHHHHHHHCc
Confidence 5899999999999999999999999999999999999999999999999998 32 8999999999999999
Q ss_pred CCccchhhHHHHH----HHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCH--HHHHHHHHHHHhcCCc
Q psy13451 101 KSYGTWFQRCYVL----DHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPL--KELNYSTEKIEANFSN 174 (522)
Q Consensus 101 k~y~~W~~R~~il----~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~--~el~~~~~~i~~~~~n 174 (522)
|+|++|+||+|++ ..+...+++++|+++|+++++.||||||||+||+|++..++. ++ +|+++++++|+.||+|
T Consensus 101 k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~-~~~~~EL~~~~~~i~~d~~N 179 (306)
T 3dra_A 101 KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDL-HNDAKELSFVDKVIDTDLKN 179 (306)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHhCCCC
Confidence 9999999999999 444122689999999999999999999999999999999997 56 9999999999999999
Q ss_pred chHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEE
Q psy13451 175 YSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVT 254 (522)
Q Consensus 175 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 254 (522)
|||||||++++..+... .....+++|+++++++|+++|+|+|+|+|+++++.+.++.... +..
T Consensus 180 ~sAW~~R~~ll~~l~~~------~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~-----------~~~ 242 (306)
T 3dra_A 180 NSAWSHRFFLLFSKKHL------ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ-----------LEE 242 (306)
T ss_dssp HHHHHHHHHHHHSSGGG------CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG-----------GHH
T ss_pred HHHHHHHHHHHHhcccc------chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH-----------HHH
Confidence 99999999999988321 1235699999999999999999999999999999998864331 010
Q ss_pred ec-ccccccccceEeeCCccceeeeecCCCCCcceeeeeccccCCCCCccchhHHHHHHHHHHhhCCCCCCChhHHHHhc
Q psy13451 255 FN-QLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRF 333 (522)
Q Consensus 255 ~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~L~~f~~~~~~~~kw~L~~l~~l~~~i~~~~~~~~~~~l~~l 333 (522)
|. +.++++ +..+.+.+++..++..... .+. ..+.+..|
T Consensus 243 ~~~~~~~~~------------------------------------~~~~~s~~al~~la~~~~~---~~~--~~~A~~~~ 281 (306)
T 3dra_A 243 FSLQFVDLE------------------------------------KDQVTSSFALETLAKIYTQ---QKK--YNESRTVY 281 (306)
T ss_dssp HHHTTEEGG------------------------------------GTEESCHHHHHHHHHHHHH---TTC--HHHHHHHH
T ss_pred HHHHHHhcc------------------------------------CCCCCCHHHHHHHHHHHHc---cCC--HHHHHHHH
Confidence 11 111100 0113466777777766553 233 78899999
Q ss_pred ccccc-cCccCcchhhchhh
Q psy13451 334 DLLKT-LDPLRLNYYKDSES 352 (522)
Q Consensus 334 ~~L~~-Ldl~~~~~~~~l~~ 352 (522)
..|.. +||.+.+++.....
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHh
Confidence 99996 89999998875443
No 4
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=100.00 E-value=3.9e-45 Score=360.91 Aligned_cols=277 Identities=22% Similarity=0.337 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCC
Q psy13451 22 KWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPK 101 (522)
Q Consensus 22 ~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk 101 (522)
++|+.+++.+++.+++++++++||++|+++|.+||++|||||+||.++..++.. +++||.+++.+|+.|||
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~---------l~eEL~~~~~~L~~nPK 121 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKS---------LEDELRLMNEFAVQNLK 121 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHhCCC
Confidence 589999999999999999999999999999999999999999999999999853 79999999999999999
Q ss_pred CccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCH--------HHHHHHHHHHHhcCC
Q psy13451 102 SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPL--------KELNYSTEKIEANFS 173 (522)
Q Consensus 102 ~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~--------~el~~~~~~i~~~~~ 173 (522)
+|++|+||+|++..+ ...++++||++|+++++.||||||||+||+|++..++. ++ +|+++++++|+.||+
T Consensus 122 ny~aW~hR~wlL~~l-~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~-~~~~~~~~~~eELe~~~k~I~~dp~ 199 (349)
T 3q7a_A 122 SYQVWHHRLLLLDRI-SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFST-LGRISEAQWGSELDWCNEMLRVDGR 199 (349)
T ss_dssp CHHHHHHHHHHHHHH-CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHHHHHHhCCC
Confidence 999999999999998 22267999999999999999999999999999999887 44 999999999999999
Q ss_pred cchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc--ceecc-cCCCce
Q psy13451 174 NYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ--IISAG-VLPSGV 250 (522)
Q Consensus 174 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~--~~~~~-~~~~~~ 250 (522)
|+|||+||++++.++... ......+++|+++++++|+++|+|+|+|+|++|++.+.++... +...- -.+..
T Consensus 200 N~SAW~~R~~lL~~l~~~-----~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~- 273 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGA-----ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASK- 273 (349)
T ss_dssp CHHHHHHHHHHHTTSTTC-----CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---
T ss_pred CHHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccccccc-
Confidence 999999999999998542 1234679999999999999999999999999999998876522 10000 00110
Q ss_pred EEEEeccccccc-ccceEeeCCccceeeeecCCCCCcceeeeeccccCC-----CCCccchhHHHHHHHHHHhhCCCCCC
Q psy13451 251 TFVTFNQLVDLT-STSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSC-----PYRNYISVALLTSITLLQHLHPGSSD 324 (522)
Q Consensus 251 ~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~L~~f~~-----~~~~~~kw~L~~l~~l~~~i~~~~~~ 324 (522)
+++. +++. + +...|.. ...+.|.+++..++.+.... +.
T Consensus 274 --------~~~~~~~~~----~--------------------~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~---~~- 317 (349)
T 3q7a_A 274 --------LNPDIETVE----A--------------------FGFPMPSDPLPEDTPLPVPLALEYLADSFIEQ---NR- 317 (349)
T ss_dssp --------------------------------------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHT---TC-
T ss_pred --------ccccchhHH----H--------------------HHHHHHhcccccccCCCcHHHHHHHHHHHHhc---CC-
Confidence 0000 0000 0 0000100 11245788998888776542 33
Q ss_pred ChhHHHHhccccc-ccCccCcchhhchhh
Q psy13451 325 SNEIILKRFDLLK-TLDPLRLNYYKDSES 352 (522)
Q Consensus 325 ~~~~~l~~l~~L~-~Ldl~~~~~~~~l~~ 352 (522)
..+....|..|. ..|+.|.+++.....
T Consensus 318 -~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 318 -VDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp -HHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 678889999996 899999999876544
No 5
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=100.00 E-value=2.6e-45 Score=390.88 Aligned_cols=362 Identities=18% Similarity=0.220 Sum_probs=255.4
Q ss_pred HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC----------hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcC
Q psy13451 85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN----------YEKELELCNYYLELDERNFHCWDYRRYVTDRHK 154 (522)
Q Consensus 85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~----------~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~ 154 (522)
.++++++|+.+|..||++|++|+|||+++..+ +. +++|+++++++++.+||||+||+||+|++..++
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l---~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHL---ETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhc---ccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 37789999999999999999999999999999 44 999999999999999999999999999999998
Q ss_pred CC-CHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchh-HHHHHHHHHHHHHhcCCCCcchhhHHHHHhc
Q psy13451 155 VA-PLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD-KYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232 (522)
Q Consensus 155 ~~-~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~-~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~ 232 (522)
.. +++|+++++++++.||+||+||+||++++..+ + .+++|+++++++|..+|+|+|||+|+++++.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l------------~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQA------------AVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP 189 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------CCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc------------CCChHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Confidence 42 59999999999999999999999999999998 4 6899999999999999999999999999998
Q ss_pred cCCCccccee-----cccCCCceEEEEecccccccccceEeeCCccceeeeecCCCCCcceeeeeccccCCCCCc-cc--
Q psy13451 233 ERTSPVQIIS-----AGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRN-YI-- 304 (522)
Q Consensus 233 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~L~~f~~~~~~-~~-- 304 (522)
...+...... ....+ . ++..+.+++.++| .....|.+.+++..-.+.... .+
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~-e-el~~~~~ai~~~P------------------~~~saW~y~~~ll~~~~~~~~~~~~~ 249 (567)
T 1dce_A 190 QLHPQPDSGPQGRLPENVLL-K-ELELVQNAFFTDP------------------NDQSAWFYHRWLLGRAEPHDVLCCVH 249 (567)
T ss_dssp HHSCCCCSSSCCSSCHHHHH-H-HHHHHHHHHHHCS------------------SCSHHHHHHHHHHSCCCCCSCEEEEE
T ss_pred hhcccccccccccccHHHHH-H-HHHHHHHHHhhCC------------------CCccHHHHHHHHHhcCCCccceeeee
Confidence 7543311000 00000 0 2233444444443 223334443333211110000 00
Q ss_pred -----hhHHHHHHHHHHhhCCCC---------------CC----------------ChhH--------------------
Q psy13451 305 -----SVALLTSITLLQHLHPGS---------------SD----------------SNEI-------------------- 328 (522)
Q Consensus 305 -----kw~L~~l~~l~~~i~~~~---------------~~----------------~~~~-------------------- 328 (522)
..++..+-.. -.+.+.. .. ..+.
T Consensus 250 ~~~~~~~~~~~f~~~-i~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (567)
T 1dce_A 250 VSREEACLSVCFSRP-LTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQ 328 (567)
T ss_dssp EETTTTEEEEEEEEE-ECTTBTTBCEEEEESSSEECCCCBCTTSSCCSEEEEEEECCGGGTSTTSSEEEEEEEETTTTEE
T ss_pred eccCCceEEEEeccc-eeccccccceEEeecCcccceeeccCCcccccceeEEeecCccccccccccceEEEeeccCCCC
Confidence 0000000000 0000000 00 0000
Q ss_pred ------------H---HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC-cCCCCcccEE
Q psy13451 329 ------------I---LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH-MHCFAHCKQV 392 (522)
Q Consensus 329 ------------~---l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~-~~~l~~L~~L 392 (522)
. +..++.| +.|++++|.|+.+|. ++.+++|+.|
T Consensus 329 ~~~~~~~~~~~~~~~d~~~~~~L-------------------------------~~L~Ls~n~L~~Lp~~i~~l~~L~~L 377 (567)
T 1dce_A 329 KECVLLKDRPECWCRDSATDEQL-------------------------------FRCELSVEKSTVLQSELESCKELQEL 377 (567)
T ss_dssp EEEEEETTCSEEEEECCSTTTTS-------------------------------SSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCchhhhcccccCccc-------------------------------eeccCChhhHHhhHHHHHHHHHHHHh
Confidence 0 0112233 345555555555554 5555555555
Q ss_pred EecCCC-------------CCCcccccCCC--------------------------------CCCccEEEcCCCCCCCCC
Q psy13451 393 DLSNNP-------------LTNNCLRHLTP--------------------------------LVACESLKLTHCSLSSLH 427 (522)
Q Consensus 393 ~Ls~n~-------------l~~~~~~~~~~--------------------------------l~~L~~L~l~~n~l~~~~ 427 (522)
++++|. +.+..|..++. ...|+.|++++|.|+++|
T Consensus 378 ~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp 457 (567)
T 1dce_A 378 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC 457 (567)
T ss_dssp CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCC
T ss_pred ccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCc
Confidence 554432 22222211110 125789999999999999
Q ss_pred CCCCCCCcCEEEccCCCCCccc-----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCC-hhhhcCCCCccE
Q psy13451 428 VFPHLPSLESLDVSHNAPNIIL-----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE-DSVFAKYEACVQ 501 (522)
Q Consensus 428 ~~~~l~~L~~L~ls~N~l~~~~-----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~ 501 (522)
.++.+++|+.|++++|.++.+| +++|+.|+|++|.|++++.++.+++|+.|+|++|.|++++ +..++.+++|+.
T Consensus 458 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred CccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 9999999999999999999876 5789999999999999888999999999999999999996 789999999999
Q ss_pred EEecCCCCcccc
Q psy13451 502 VILTGNPVSADM 513 (522)
Q Consensus 502 L~L~~N~l~~~~ 513 (522)
|+|++|++++..
T Consensus 538 L~L~~N~l~~~~ 549 (567)
T 1dce_A 538 LNLQGNSLCQEE 549 (567)
T ss_dssp EECTTSGGGGSS
T ss_pred EEecCCcCCCCc
Confidence 999999998653
No 6
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.98 E-value=2.3e-32 Score=267.46 Aligned_cols=205 Identities=20% Similarity=0.249 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCC
Q psy13451 23 WYHNLMETIFEKRKNQ-EYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPK 101 (522)
Q Consensus 23 ~y~~~~~~~~~~~~~~-~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk 101 (522)
-|..+..+-..+..-+ ..-+++|++++.+|.+||++|++|++||.++.++...... ...+++||.+++++|+.+||
T Consensus 66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~---~~~~~~EL~~~~~~l~~~pk 142 (306)
T 3dra_A 66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN---DFDPYREFDILEAMLSSDPK 142 (306)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT---CCCTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc---cCCHHHHHHHHHHHHHhCCC
Confidence 3445555555555556 4558899999999999999999999999999443211000 00168999999999999999
Q ss_pred CccchhhHHHHHHHhcCCCChH--HHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCC-----CHHHHHHHHHHHHhcCCc
Q psy13451 102 SYGTWFQRCYVLDHISRAPNYE--KELELCNYYLELDERNFHCWDYRRYVTDRHKVA-----PLKELNYSTEKIEANFSN 174 (522)
Q Consensus 102 ~y~~W~~R~~il~~l~~~~~~~--~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~-----~~~el~~~~~~i~~~~~n 174 (522)
+|++|+||+|++.++ +.++ +|+++|+++++.||+|||||+||+|++..++.. +++|+++++++|..||+|
T Consensus 143 ny~aW~~R~~vl~~l---~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n 219 (306)
T 3dra_A 143 NHHVWSYRKWLVDTF---DLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN 219 (306)
T ss_dssp CHHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHHHh---cccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence 999999999999999 6667 999999999999999999999999999998752 689999999999999999
Q ss_pred chHhhHHHHHhchhCCCCCCC-------Cc-------------------cchhHHHHHHHHHHHHHh-cCCCCcchhhHH
Q psy13451 175 YSAWHYRSKLLPLLYPDPNNH-------LP-------------------IEQDKYVNEFSMVESAVF-TEPKDQSAWFYQ 227 (522)
Q Consensus 175 ~saW~~r~~ll~~l~~~~~~~-------~~-------------------~~~~~~~~el~~~~~ai~-~~p~~~s~W~y~ 227 (522)
+|||+||++++..+....++. .. ...+..++++++++.+.. .||-+...|.|+
T Consensus 220 ~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 220 PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 999999999998875432110 00 012466789999999997 799999999999
Q ss_pred HHHhcc
Q psy13451 228 RWLLGE 233 (522)
Q Consensus 228 ~~ll~~ 233 (522)
+..|..
T Consensus 300 ~~~l~~ 305 (306)
T 3dra_A 300 ISKLTS 305 (306)
T ss_dssp HHTCC-
T ss_pred Hhhccc
Confidence 887653
No 7
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.97 E-value=3e-31 Score=261.75 Aligned_cols=168 Identities=20% Similarity=0.386 Sum_probs=152.2
Q ss_pred HHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCC-ChHHHHHHHH
Q psy13451 52 LRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAP-NYEKELELCN 130 (522)
Q Consensus 52 l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~-~~~~el~~~~ 130 (522)
|..+|++.++|+++|.++.+.+.+ +++|++|+.+|..||++|++|++|++++..+ + .+++||++++
T Consensus 47 i~y~~~y~~~~~~~r~~~~~~e~s----------e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l---~~~l~eEL~~~~ 113 (349)
T 3q7a_A 47 IMYSEEYKDAMDYFRAIAAKEEKS----------ERALELTEIIVRMNPAHYTVWQYRFSLLTSL---NKSLEDELRLMN 113 (349)
T ss_dssp BCCCHHHHHHHHHHHHHHHTTCCS----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCCHHHHHHHHH
T ss_pred eeeCHHHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHhCchhHHHHHHHHHHHHHh---hhhHHHHHHHHH
Confidence 457889999999999999998774 7999999999999999999999999999999 5 6999999999
Q ss_pred HHHhhcCCCcchhhHHHHHHHhc-CCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHH
Q psy13451 131 YYLELDERNFHCWDYRRYVTDRH-KVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSM 209 (522)
Q Consensus 131 ~~l~~d~kn~~aW~~R~~~l~~~-~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~ 209 (522)
++|..+||||++|+||+|++..+ +..+++|+++++++++.||+||+||+||++++..+.... ......+++|+++
T Consensus 114 ~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~----~~~~~~~~eELe~ 189 (349)
T 3q7a_A 114 EFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG----RISEAQWGSELDW 189 (349)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT----CCCHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc----ccchhhHHHHHHH
Confidence 99999999999999999999998 624799999999999999999999999999999984322 1123556699999
Q ss_pred HHHHHhcCCCCcchhhHHHHHhccCCC
Q psy13451 210 VESAVFTEPKDQSAWFYQRWLLGERTS 236 (522)
Q Consensus 210 ~~~ai~~~p~~~s~W~y~~~ll~~~~~ 236 (522)
++++|..||.|.|||+||++++.+.++
T Consensus 190 ~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 190 CNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999999998875
No 8
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.96 E-value=3.5e-29 Score=246.14 Aligned_cols=176 Identities=21% Similarity=0.293 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN 121 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~ 121 (522)
+++|.+++.+|..||++|+||++|+.++..++... +++||.++++++..+|++|.||+||+|++..+ +.
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~--------~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l---~~ 159 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN--------WARELELCARFLEADERNFHCWDYRRFVAAQA---AV 159 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---Cc
Confidence 67899999999999999999999999999987521 68999999999999999999999999999999 55
Q ss_pred -hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCC-------------CCHHHHHHHHHHHHhcCCcchHhhHHHHHhch
Q psy13451 122 -YEKELELCNYYLELDERNFHCWDYRRYVTDRHKV-------------APLKELNYSTEKIEANFSNYSAWHYRSKLLPL 187 (522)
Q Consensus 122 -~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~-------------~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~ 187 (522)
+++|+++++++++.||+|++||+||++++..+.. .+++|+++++++|..+|.|.|||+|+++++..
T Consensus 160 ~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 160 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 6999999999999999999999999999998821 25799999999999999999999999999887
Q ss_pred hCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHh
Q psy13451 188 LYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL 231 (522)
Q Consensus 188 l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll 231 (522)
......- .....+.+++|++++++++..+|++ .|.+...++
T Consensus 240 ~~~~~~~-~~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~ 280 (331)
T 3dss_A 240 GSGRCEL-SVEKSTVLQSELESCKELQELEPEN--KWCLLTIIL 280 (331)
T ss_dssp SSCGGGC-CHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred ccCcccc-chHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHH
Confidence 6332110 1223378999999999999999987 999887765
No 9
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=3.2e-27 Score=239.57 Aligned_cols=263 Identities=18% Similarity=0.342 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy13451 23 WYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS 102 (522)
Q Consensus 23 ~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~ 102 (522)
.+..++.............++|+..++++|.+||+++++|++|+.++..++++ +++|+.+++++|..+|++
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d---------~~eAl~~~~~al~l~P~~ 165 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD---------LHEEMNYITAIIEEQPKN 165 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccC---------HHHHHHHHHHHHHHCCCC
Confidence 34555555555566666679999999999999999999999999999999853 599999999999999999
Q ss_pred ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHH
Q psy13451 103 YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS 182 (522)
Q Consensus 103 y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~ 182 (522)
+.+|++|++++..+ +++++++.++++++++||+|+++|.+|++++..++. +++++++++++|+.||+|.+||++|+
T Consensus 166 ~~a~~~~g~~~~~~---g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~-~~eAl~~~~~al~l~P~~~~a~~~lg 241 (382)
T 2h6f_A 166 YQVWHHRRVLVEWL---RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL-WDNELQYVDQLLKEDVRNNSVWNQRY 241 (382)
T ss_dssp HHHHHHHHHHHHHH---TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999 889999999999999999999999999999999998 79999999999999999999999999
Q ss_pred HHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCC--cccceecccCCCceEEEEeccccc
Q psy13451 183 KLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTS--PVQIISAGVLPSGVTFVTFNQLVD 260 (522)
Q Consensus 183 ~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 260 (522)
.++..+... ..+..+++|++++++|+.++|+|.++|+|+++++...+. .... +..+.
T Consensus 242 ~~l~~l~~~------~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a-----------~~~~~---- 300 (382)
T 2h6f_A 242 FVISNTTGY------NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNL-----------LNQLL---- 300 (382)
T ss_dssp HHHHHTTCS------CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHH-----------HHHHH----
T ss_pred HHHHHhcCc------chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHH-----------HHHHH----
Confidence 999985332 123457888999999999999999999999999988652 2211 00000
Q ss_pred ccccceEeeCCccceeeeecCCCCCcceeeeeccccCCCCCccchhHHHHHHHHHHhhCCC---C-CCChhHHHHhcccc
Q psy13451 261 LTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPG---S-SDSNEIILKRFDLL 336 (522)
Q Consensus 261 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~w~~~L~~f~~~~~~~~kw~L~~l~~l~~~i~~~---~-~~~~~~~l~~l~~L 336 (522)
.. +..+++.|++..+..+....... . .+...+.+..+..+
T Consensus 301 ----------------------------------~~--~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 301 ----------------------------------DL--QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp ----------------------------------HH--TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ----------------------------------Hh--ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 00 22355778888877666543100 0 00147788999999
Q ss_pred -cccCccCcchhhchhhhhh
Q psy13451 337 -KTLDPLRLNYYKDSESKYK 355 (522)
Q Consensus 337 -~~Ldl~~~~~~~~l~~~~~ 355 (522)
..+|+.+..+|......+.
T Consensus 345 ~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 345 AKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHTTCGGGHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHH
Confidence 8999999999987766544
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.86 E-value=7.6e-22 Score=199.99 Aligned_cols=160 Identities=20% Similarity=0.442 Sum_probs=152.6
Q ss_pred HHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC-hHHHHHH
Q psy13451 50 EVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN-YEKELEL 128 (522)
Q Consensus 50 ~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~-~~~el~~ 128 (522)
.+|.++|++..+|++++.++...+. +++++..++++|+.+|+++.+|++|+.++..+ +. +++++.+
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~----------~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~---g~d~~eAl~~ 154 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDER----------SERAFKLTRDAIELNAANYTVWHFRRVLLKSL---QKDLHEEMNY 154 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCC----------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCCHHHHHHH
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc---ccCHHHHHHH
Confidence 4678999999999999999999887 69999999999999999999999999999999 75 9999999
Q ss_pred HHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHH
Q psy13451 129 CNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFS 208 (522)
Q Consensus 129 ~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~ 208 (522)
++++++++|+++.+|++|++++..++. +++++++++++|+.||+|+.||++|++++..+ +.++++++
T Consensus 155 ~~~al~l~P~~~~a~~~~g~~~~~~g~-~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~------------g~~~eAl~ 221 (382)
T 2h6f_A 155 ITAIIEEQPKNYQVWHHRRVLVEWLRD-PSQELEFIADILNQDAKNYHAWQHRQWVIQEF------------KLWDNELQ 221 (382)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------------TCCTTHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc------------CChHHHHH
Confidence 999999999999999999999999998 79999999999999999999999999999999 77889999
Q ss_pred HHHHHHhcCCCCcchhhHHHHHhccCC
Q psy13451 209 MVESAVFTEPKDQSAWFYQRWLLGERT 235 (522)
Q Consensus 209 ~~~~ai~~~p~~~s~W~y~~~ll~~~~ 235 (522)
+++++|.++|+|.++|++++.++....
T Consensus 222 ~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 222 YVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999998843
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=1.9e-19 Score=175.26 Aligned_cols=183 Identities=19% Similarity=0.156 Sum_probs=156.3
Q ss_pred hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCC-cccccC--cCCCCcccEEEecCCCCCCc
Q psy13451 326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQ-LTSIHH--MHCFAHCKQVDLSNNPLTNN 402 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~-l~~l~~--~~~l~~L~~L~Ls~n~l~~~ 402 (522)
++..+..+++|+.|++.++......+..+.. ++.+ +.|++++|. ++.++. +..+++|+.|++++|.+++.
T Consensus 48 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L----~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 120 (285)
T 1ozn_A 48 PAASFRACRNLTILWLHSNVLARIDAAAFTG---LALL----EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTT---CTTC----CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred CHHHcccCCCCCEEECCCCccceeCHhhcCC---ccCC----CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEE
Confidence 3455688999999999988665433332221 1222 699999997 888744 88999999999999999987
Q ss_pred ccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCC
Q psy13451 403 CLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHL 472 (522)
Q Consensus 403 ~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~ 472 (522)
.|..|..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ +++|+.|++++|.++++.+ +..+
T Consensus 121 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 200 (285)
T 1ozn_A 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCc
Confidence 7888999999999999999999986 3889999999999999998765 4789999999999999854 8899
Q ss_pred CCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451 473 PSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 473 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 515 (522)
++|+.|++++|.++++++..+..+++|+.|++++|++.|+|..
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 9999999999999999988899999999999999999999865
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=4.4e-19 Score=171.38 Aligned_cols=174 Identities=19% Similarity=0.245 Sum_probs=148.5
Q ss_pred ccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCC
Q psy13451 334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLV 411 (522)
Q Consensus 334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 411 (522)
++|+.|++.++.........+. .+..+ +.|++++|.++.++. +..+++|+.|++++|.+++..+..|..++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~---~l~~L----~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFH---RLTKL----RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV 109 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSS---SCTTC----CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred CCCCEEECcCCCCCeeCHHHhc---CCCCC----CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence 5688899888765432221111 11122 699999999999887 68899999999999999976667789999
Q ss_pred CccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEcc
Q psy13451 412 ACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVS 481 (522)
Q Consensus 412 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls 481 (522)
+|+.|++++|.++.++ .|..+++|+.|++++|.++.++ +++|+.|++++|.++.+++ +..+++|+.|+|+
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 9999999999999986 3789999999999999998765 4789999999999999886 8889999999999
Q ss_pred CCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 482 HNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 482 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
+|.++.+++..+..+++|+.|+|++|++.|+|.
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 999999998889999999999999999999985
No 13
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=1.1e-18 Score=166.58 Aligned_cols=145 Identities=23% Similarity=0.345 Sum_probs=135.0
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N 443 (522)
+.|++++|+++.++. +..+++|+.|+|++|.+++..+..|..+++|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus 38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence 799999999999765 889999999999999999888888999999999999999999986 4789999999999999
Q ss_pred CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 444 APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 444 ~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
.++.++ .++|+.|+|++|.|+.+++ +..+++|+.|+|++|.++.+++..+..+++|+.|+|++|+++|+
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 998765 4789999999999999886 88999999999999999999988899999999999999999998
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=9.8e-19 Score=169.11 Aligned_cols=177 Identities=19% Similarity=0.251 Sum_probs=152.7
Q ss_pred HHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCC
Q psy13451 329 ILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLT 408 (522)
Q Consensus 329 ~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 408 (522)
....+++|+.|++.++.... +.. + ..++.+ +.|++++|.+++++.+..+++|+.|++++|.+++..+..|.
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~-~~~-l---~~l~~L----~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKS-VQG-I---QYLPNV----RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCC-CTT-G---GGCTTC----CEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred ccccccceeeeeeCCCCccc-ccc-c---ccCCCC----cEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhc
Confidence 35778899999988766432 111 1 112222 69999999999998899999999999999999977777789
Q ss_pred CCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEE
Q psy13451 409 PLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESL 478 (522)
Q Consensus 409 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L 478 (522)
.+++|+.|++++|.++.++. +..+++|+.|++++|.++.++ +++|+.|++++|.++++++ +..+++|+.|
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 99999999999999999864 789999999999999998765 4689999999999999887 7899999999
Q ss_pred EccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 479 DVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 479 ~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
++++|.++++++..++.+++|+.|++++|++.|.|.
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 999999999998889999999999999999999874
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=4.5e-19 Score=183.66 Aligned_cols=182 Identities=18% Similarity=0.250 Sum_probs=144.1
Q ss_pred hHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCC-CCCCcc
Q psy13451 327 EIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNN-PLTNNC 403 (522)
Q Consensus 327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n-~l~~~~ 403 (522)
+..+..+++|+.|+++++.........+. .+..+ +.|++++|.++.++. +..+++|+.|++++| .++...
T Consensus 105 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L----~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 105 IGAFNGLANLNTLELFDNRLTTIPNGAFV---YLSKL----KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp GGGGTTCSSCCEEECCSSCCSSCCTTTSC---SCSSC----CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred hhhccCCccCCEEECCCCcCCeeCHhHhh---ccccC----ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 34556667777777666544321111111 11111 588888888888766 778888888888884 444333
Q ss_pred cccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCC
Q psy13451 404 LRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSL 475 (522)
Q Consensus 404 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L 475 (522)
+..|.++++|+.|++++|.++.+|.+..+++|+.|++++|.++.++ +++|+.|++++|.|+.+++ +..+++|
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred cchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 4468889999999999999999999999999999999999998764 4788999999999999875 8899999
Q ss_pred CEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451 476 ESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 476 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 515 (522)
+.|+|++|.|+.++...|..+++|+.|+|++|++.|+|..
T Consensus 258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred CEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 9999999999999988999999999999999999999964
No 16
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=1.9e-18 Score=168.70 Aligned_cols=173 Identities=21% Similarity=0.167 Sum_probs=147.4
Q ss_pred ccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCc
Q psy13451 334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC 413 (522)
Q Consensus 334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 413 (522)
++++.|+++++......+..+.. +..+ +.|++++|.|+.++....+++|+.|++++|.++ .+|..+..+++|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~---l~~L----~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L 102 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMP---YTRL----TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTT---CTTC----CEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTC
T ss_pred CCCCEEEcCCCcCCccCHHHhhc---CCCC----CEEECCCCccCcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCC
Confidence 57888998888765543332222 2222 699999999999888788999999999999998 788889999999
Q ss_pred cEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCC
Q psy13451 414 ESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHN 483 (522)
Q Consensus 414 ~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N 483 (522)
+.|++++|+++.++ .|..+++|+.|++++|.++.++ .++|+.|+|++|.|+.++. +..+++|+.|+|++|
T Consensus 103 ~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC
Confidence 99999999999986 4899999999999999998766 3689999999999999886 788999999999999
Q ss_pred CCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451 484 AIDHIEDSVFAKYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 484 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 515 (522)
.|+.++. .+..+++|+.|+|++|++.|+|..
T Consensus 183 ~l~~ip~-~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 183 SLYTIPK-GFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCCCCCT-TTTTTCCCSEEECCSCCBCCSGGG
T ss_pred cCCccCh-hhcccccCCeEEeCCCCccCcCcc
Confidence 9999885 455677999999999999999843
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=7.4e-19 Score=182.73 Aligned_cols=181 Identities=19% Similarity=0.233 Sum_probs=139.2
Q ss_pred HHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCC-CCCCccc
Q psy13451 328 IILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNN-PLTNNCL 404 (522)
Q Consensus 328 ~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n-~l~~~~~ 404 (522)
..+..+++|+.|+++++.........+. .+..+ +.|++++|.++.++. +..+++|+.|++++| .+....+
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVIPSGAFE---YLSKL----RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCTTTSS---SCTTC----CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred hhccCcccCCEEECCCCcCCccChhhhc---ccCCC----CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence 3445566666666655543321111111 01111 577777777777665 677777777777773 4443333
Q ss_pred ccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCC
Q psy13451 405 RHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLE 476 (522)
Q Consensus 405 ~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~ 476 (522)
..|.++++|+.|++++|.++.+|.+..+++|+.|++++|.++.+. +++|+.|++++|.++.+++ +..+++|+
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 468888999999999999999999999999999999999998764 4789999999999998865 88999999
Q ss_pred EEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451 477 SLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 477 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 515 (522)
.|+|++|.|+.++...+..+++|+.|+|++|++.|+|..
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 999999999999988899999999999999999999965
No 18
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2e-18 Score=161.43 Aligned_cols=147 Identities=23% Similarity=0.279 Sum_probs=130.8
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCC--CCCCCCCCcCEEEccCCCC
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESLDVSHNAP 445 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~ls~N~l 445 (522)
+.+++++++++.+|. .-.++++.|++++|.+++..+..|..+++|+.|++++|.|+.+ ..|..+++|+.|++++|.+
T Consensus 14 ~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 578999999999987 1237899999999999976667899999999999999999987 3688999999999999999
Q ss_pred Cccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451 446 NIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 446 ~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 515 (522)
+.++ .++|+.|+|++|.|+.+++ +..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|++.|+|.+
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 8766 4678999999999999865 88999999999999999999988899999999999999999999865
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3e-18 Score=161.27 Aligned_cols=146 Identities=21% Similarity=0.277 Sum_probs=133.5
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCCCC
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHNAP 445 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N~l 445 (522)
+.+++++++++.+|. ...++|+.|+|++|.+++..|..|..+++|+.|++++|.|+.++. |..+++|+.|++++|.+
T Consensus 22 ~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 589999999999997 234899999999999998888899999999999999999999863 78999999999999999
Q ss_pred Cccc------cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 446 NIIL------CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 446 ~~~~------~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
+.++ .++|+.|+|++|.|+.++. +..+++|+.|+|++|.|+.++...+..+++|+.|+|++|++.|+|.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8765 4788999999999999876 8889999999999999999998889999999999999999999985
No 20
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=2.2e-18 Score=166.95 Aligned_cols=180 Identities=19% Similarity=0.239 Sum_probs=147.9
Q ss_pred HHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccc
Q psy13451 328 IILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLR 405 (522)
Q Consensus 328 ~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~ 405 (522)
..+..+++|+.|+++++.........+.. +..+ +.|++++|.++.++. +..+++|+.|++++|.+++..+.
T Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 118 (276)
T 2z62_A 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQS---LSHL----STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118 (276)
T ss_dssp TTTTTCTTCSEEECTTCCCCEECTTTTTT---CTTC----CEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC
T ss_pred hHhccccCCcEEECCCCcCCccCHHHccC---CcCC----CEEECCCCccCccChhhhcCCccccEEECCCCCccccCch
Confidence 35678899999999888654332222211 1222 699999999999764 88999999999999999976666
Q ss_pred cCCCCCCccEEEcCCCCCCCC--C-CCCCCCCcCEEEccCCCCCcccc------Cccc----EEEcCCCCCCCCCC-CCC
Q psy13451 406 HLTPLVACESLKLTHCSLSSL--H-VFPHLPSLESLDVSHNAPNIILC------VYFQ----SLKLTHCSLSSLHV-FPH 471 (522)
Q Consensus 406 ~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~ls~N~l~~~~~------~~L~----~L~Ls~n~l~~~~~-l~~ 471 (522)
.+..+++|+.|++++|.++.+ | .+..+++|+.|++++|.++.++. ..++ .|++++|.++.+++ ...
T Consensus 119 ~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~ 198 (276)
T 2z62_A 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (276)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC
T ss_pred hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC
Confidence 799999999999999999873 4 58889999999999999987753 3344 89999999999876 444
Q ss_pred CCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 472 LPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 472 ~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
..+|+.|+|++|.++.+++..+..+++|+.|++++|++.|+|.
T Consensus 199 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 199 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 4589999999999999998888999999999999999999984
No 21
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=6.9e-18 Score=157.73 Aligned_cols=147 Identities=16% Similarity=0.222 Sum_probs=130.1
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCccc-ccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCC
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCL-RHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA 444 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~ 444 (522)
+.+++++|.++.+|. .-...++.|+|++|.+++..+ ..|..+++|+.|++++|.|+.++ .|..+++|+.|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 589999999999987 224567899999999996644 45789999999999999999875 58999999999999999
Q ss_pred CCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451 445 PNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 445 l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 515 (522)
++.++ +++|+.|+|++|.|+.+++ +..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|++.|+|..
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 98765 4789999999999999865 88999999999999999999888999999999999999999999975
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=2.4e-18 Score=171.03 Aligned_cols=181 Identities=14% Similarity=0.113 Sum_probs=143.8
Q ss_pred hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC-cCCCCcccEEEecCCCCCCccc
Q psy13451 326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCL 404 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~ 404 (522)
.+..+..+++|+.|++.++.+. .++..+.. +..+ ++|++++|.++.+|. +..+++|+.|++++|.+.+.+|
T Consensus 96 lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~---l~~L----~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p 167 (328)
T 4fcg_A 96 FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ---FAGL----ETLTLARNPLRALPASIASLNRLRELSIRACPELTELP 167 (328)
T ss_dssp CCSCGGGGTTCSEEEEESSCCC-CCCSCGGG---GTTC----SEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCC
T ss_pred cChhhhhCCCCCEEECCCCCcc-chhHHHhc---cCCC----CEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccC
Confidence 3444567889999998887765 44433322 2222 589999999998887 8889999999999988888888
Q ss_pred ccCCC---------CCCccEEEcCCCCCCCCC-CCCCCCCcCEEEccCCCCCccc-----cCcccEEEcCCCCCCCCCC-
Q psy13451 405 RHLTP---------LVACESLKLTHCSLSSLH-VFPHLPSLESLDVSHNAPNIIL-----CVYFQSLKLTHCSLSSLHV- 468 (522)
Q Consensus 405 ~~~~~---------l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~ls~N~l~~~~-----~~~L~~L~Ls~n~l~~~~~- 468 (522)
..+.. +++|+.|++++|.++.+| .+..+++|+.|++++|.++.++ +++|+.|++++|.+.+..+
T Consensus 168 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~ 247 (328)
T 4fcg_A 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247 (328)
T ss_dssp SCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred hhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHH
Confidence 77654 889999999999998876 5788889999999999988765 4788999999988766543
Q ss_pred -CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 469 -FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 469 -l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
+..+++|+.|+|++|.+.+..+..++.+++|+.|+|++|++.....
T Consensus 248 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 7888999999999988777666778899999999999988776543
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=1.3e-17 Score=177.55 Aligned_cols=183 Identities=18% Similarity=0.176 Sum_probs=155.5
Q ss_pred hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC----cCCCCcccEEEecCCCCCC
Q psy13451 326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH----MHCFAHCKQVDLSNNPLTN 401 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~----~~~l~~L~~L~Ls~n~l~~ 401 (522)
+...+..+++|+.||++++...+..+........++.+ +.|++++|.++.++. +..+++|+.|++++|.++
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L----~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 400 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL----QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH- 400 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC----CEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-
T ss_pred CHHHHhcCccccEEEccCCccccccccchhhhhccccC----cEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-
Confidence 44555789999999999998877554322111122222 599999999998763 888999999999999999
Q ss_pred cccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc--cCcccEEEcCCCCCCCCCCCCCCCCCCEEE
Q psy13451 402 NCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL--CVYFQSLKLTHCSLSSLHVFPHLPSLESLD 479 (522)
Q Consensus 402 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~--~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~ 479 (522)
.+|..+..+++|+.|++++|.++.++... .++|+.|++++|.+++++ +++|+.|++++|.|+.++....+++|+.|+
T Consensus 401 ~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~-~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~ 479 (549)
T 2z81_A 401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCI-PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMK 479 (549)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCSCCCTTS-CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEE
T ss_pred cCChhhcccccccEEECCCCCcccccchh-cCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEe
Confidence 78888999999999999999999887422 368999999999998775 689999999999999988877789999999
Q ss_pred ccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 480 VSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 480 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
|++|.++++++..+..+++|+.|++++|++.|+|.
T Consensus 480 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 99999999998889999999999999999999985
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=6.4e-18 Score=166.17 Aligned_cols=181 Identities=20% Similarity=0.168 Sum_probs=148.5
Q ss_pred hHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC---cCCCCcccEEEecCCCCCCcc
Q psy13451 327 EIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH---MHCFAHCKQVDLSNNPLTNNC 403 (522)
Q Consensus 327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n~l~~~~ 403 (522)
+..+..+++|+.|+++++.... ++..+. .+..+ +.|++++|.++.++. +..+++|+.|++++|.+++..
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~---~l~~L----~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVIT-MSSNFL---GLEQL----EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEEE-EEEEEE---TCTTC----CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred ccccccccccCEEECCCCcccc-ChhhcC---CCCCC----CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 3555667888888877765442 211111 11222 699999999998753 788999999999999999888
Q ss_pred cccCCCCCCccEEEcCCCCCCC--CC-CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCC
Q psy13451 404 LRHLTPLVACESLKLTHCSLSS--LH-VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHL 472 (522)
Q Consensus 404 ~~~~~~l~~L~~L~l~~n~l~~--~~-~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~ 472 (522)
+..|..+++|+.|++++|.++. +| .+..+++|+.|++++|.++.++ .++|+.|++++|.++++++ +..+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 8889999999999999999886 44 6889999999999999998764 4789999999999999876 7889
Q ss_pred CCCCEEEccCCCCCCCChhhhcCCC-CccEEEecCCCCcccccc
Q psy13451 473 PSLESLDVSHNAIDHIEDSVFAKYE-ACVQVILTGNPVSADMVV 515 (522)
Q Consensus 473 ~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~ 515 (522)
++|+.|+|++|.+++.++..+..++ +|+.|+|++|+++|+|..
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 9999999999999998888888885 999999999999999853
No 25
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=171.37 Aligned_cols=181 Identities=20% Similarity=0.217 Sum_probs=152.3
Q ss_pred hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcc
Q psy13451 326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNC 403 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~ 403 (522)
.+..+..+++|+.|+++++.........+.. +..+ +.|++++|.|+.++. +..+++|+.|+|++|.++...
T Consensus 80 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~---l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 152 (440)
T 3zyj_A 80 KVNSFKHLRHLEILQLSRNHIRTIEIGAFNG---LANL----NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152 (440)
T ss_dssp CTTTTSSCSSCCEEECCSSCCCEECGGGGTT---CSSC----CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC
T ss_pred CHHHhhCCCCCCEEECCCCcCCccChhhccC---CccC----CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC
Confidence 3455688999999999988765433332221 2222 699999999999876 889999999999999999666
Q ss_pred cccCCCCCCccEEEcCCC-CCCCCC--CCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCC--CCCCCC
Q psy13451 404 LRHLTPLVACESLKLTHC-SLSSLH--VFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHV--FPHLPS 474 (522)
Q Consensus 404 ~~~~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~--l~~~~~ 474 (522)
+..|..+++|+.|++++| .++.++ .|..+++|+.|++++|.++.++ .++|+.|+|++|.|+++++ +..+++
T Consensus 153 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232 (440)
T ss_dssp TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTT
T ss_pred HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCcc
Confidence 678999999999999985 566665 4889999999999999999876 5789999999999999865 899999
Q ss_pred CCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 475 LESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 475 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
|+.|+|++|.|+.+++..|..+++|+.|+|++|.++...
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 999999999999999889999999999999999998554
No 26
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=1.2e-16 Score=154.13 Aligned_cols=146 Identities=24% Similarity=0.286 Sum_probs=132.7
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N 443 (522)
+.|++++|.++.++. +..+++|+.|++++|.++...+..|..+++|++|++++|.++.++ .+..+++|+.|++++|
T Consensus 40 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp SEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred CEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC
Confidence 799999999999875 889999999999999999665666789999999999999999986 4788999999999999
Q ss_pred CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 444 APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 444 ~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
.++.++ +++|+.|++++|.++.+++ +..+++|+.|+|++|.++.+++..|..+++|+.|+|++|+++...
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 998765 4789999999999999886 889999999999999999999888999999999999999987544
No 27
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=1.3e-17 Score=164.34 Aligned_cols=171 Identities=16% Similarity=0.211 Sum_probs=129.0
Q ss_pred HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCC
Q psy13451 330 LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTP 409 (522)
Q Consensus 330 l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 409 (522)
+..+++|+.|+++++....... + ..+..+ +.|++++|.++.++.+..+++|+.|++++|.+++ ++. +..
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~--~---~~l~~L----~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~-l~~ 127 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP--L---KNLTKI----TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD-VTP-LAG 127 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--G---TTCCSC----CEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCC-CGG-GTT
T ss_pred hhccCCCCEEEccCCcCCCChh--H---ccCCCC----CEEEccCCcCCCchhhcCCCCCCEEECCCCCCCC-chh-hcC
Confidence 4667778888877765443211 1 112222 5888888888888777788888888888888874 343 778
Q ss_pred CCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCC
Q psy13451 410 LVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI 485 (522)
Q Consensus 410 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l 485 (522)
+++|+.|++++|.++.++.+..+++|+.|++++|.++.++ +++|+.|++++|.+++++++..+++|+.|+|++|.+
T Consensus 128 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred CCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCcc
Confidence 8888888888888888777778888888888888887655 477888888888888877777888888888888888
Q ss_pred CCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 486 DHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 486 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
++++ .+..+++|+.|++++|++++..
T Consensus 208 ~~~~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 208 SDVS--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred Cccc--cccCCCCCCEEEccCCeeecCC
Confidence 8876 3778888888888888887633
No 28
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=1.7e-17 Score=162.06 Aligned_cols=173 Identities=19% Similarity=0.216 Sum_probs=147.9
Q ss_pred HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCC
Q psy13451 330 LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTP 409 (522)
Q Consensus 330 l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 409 (522)
...+++|+.|++.++....- +. + ..++.+ +.|++++|.+++++.+..+++|+.|++++|.+++ ++ .+..
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~~-~---~~l~~L----~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~-~l~~ 110 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-QG-I---QYLPNV----TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKD 110 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TT-G---GGCTTC----CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTT
T ss_pred hhhcCcccEEEccCCCcccC-hh-H---hcCCCC----CEEEccCCccCCCcccccCCCCCEEECCCCcCCC-Ch-hhcc
Confidence 46789999999888765432 11 1 112222 6999999999998889999999999999999984 44 4899
Q ss_pred CCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCC
Q psy13451 410 LVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI 485 (522)
Q Consensus 410 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l 485 (522)
+++|+.|++++|.++.++.+..+++|+.|++++|.++.++ +++|+.|++++|.+++++++..+++|+.|+|++|.|
T Consensus 111 l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp CTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcC
Confidence 9999999999999999998999999999999999998765 588999999999999988899999999999999999
Q ss_pred CCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451 486 DHIEDSVFAKYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 486 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 515 (522)
++++ .+..+++|+.|++++|+++.....
T Consensus 191 ~~l~--~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 191 SDLR--ALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp CBCG--GGTTCTTCSEEEEEEEEEECCCEE
T ss_pred CCCh--hhccCCCCCEEECcCCcccCCccc
Confidence 9985 489999999999999998765543
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=5.3e-17 Score=158.34 Aligned_cols=169 Identities=22% Similarity=0.248 Sum_probs=142.4
Q ss_pred HhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCC
Q psy13451 331 KRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLT 408 (522)
Q Consensus 331 ~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~ 408 (522)
+.+++++.++..++.... ++. .+....+.|++++|.++.++. +..+++|+.|++++|.+++ ++. ..
T Consensus 7 ~~l~~l~~l~~~~~~l~~-ip~---------~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~ 74 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTA-LPP---------DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DG 74 (290)
T ss_dssp ECSTTCCEEECTTSCCSS-CCS---------CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CS
T ss_pred cccCCccEEECCCCCCCc-CCC---------CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CC
Confidence 567788888887755432 111 111112799999999999754 8999999999999999984 444 37
Q ss_pred CCCCccEEEcCCCCCCCCCC-CCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEE
Q psy13451 409 PLVACESLKLTHCSLSSLHV-FPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLD 479 (522)
Q Consensus 409 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~ 479 (522)
.+++|+.|++++|.++.+|. +..+++|+.|++++|+++.++ .++|+.|++++|.|+.+++ +..+++|+.|+
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 89999999999999999874 788999999999999998776 4689999999999999886 78899999999
Q ss_pred ccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451 480 VSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511 (522)
Q Consensus 480 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 511 (522)
|++|.|+.++...|..+++|+.|+|++|+++.
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 99999999998889999999999999999874
No 30
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=5e-17 Score=158.07 Aligned_cols=174 Identities=23% Similarity=0.221 Sum_probs=146.8
Q ss_pred cccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCccccc-C-cCCCCcccEEEecCCC-CCCcccccCCC
Q psy13451 333 FDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIH-H-MHCFAHCKQVDLSNNP-LTNNCLRHLTP 409 (522)
Q Consensus 333 l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~-~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 409 (522)
.++|+.|++.++.........+.. +..+ +.|++++|.++.++ . +..+++|+.|++++|. ++...|..|..
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~---~~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRA---CRNL----TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTT---CTTC----CEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCCceEEEeeCCcCCccCHHHccc---CCCC----CEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 468899998887665432222211 1222 69999999999974 3 8899999999999997 88666888999
Q ss_pred CCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEE
Q psy13451 410 LVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLD 479 (522)
Q Consensus 410 l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~ 479 (522)
+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ +++|+.|++++|.++.+++ +..+++|+.|+
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 999999999999999874 4888999999999999998765 4689999999999999876 88899999999
Q ss_pred ccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 480 VSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 480 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
+++|.++++.+..+..+++|+.|++++|.++...
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 9999999998889999999999999999998644
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=2.2e-17 Score=171.61 Aligned_cols=181 Identities=18% Similarity=0.185 Sum_probs=148.2
Q ss_pred hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcc
Q psy13451 326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNC 403 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~ 403 (522)
.+..+..+++|+.|+++++......+..+.. +..+ +.|++++|.|+.++. +..+++|+.|+|++|.++...
T Consensus 91 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~---l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 163 (452)
T 3zyi_A 91 QADTFRHLHHLEVLQLGRNSIRQIEVGAFNG---LASL----NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTT---CTTC----CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC
T ss_pred CHHHcCCCCCCCEEECCCCccCCcChhhccC---cccC----CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC
Confidence 3455688899999999887665433332221 1222 589999999999876 888999999999999998666
Q ss_pred cccCCCCCCccEEEcCCC-CCCCCC--CCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCC--CCCCCC
Q psy13451 404 LRHLTPLVACESLKLTHC-SLSSLH--VFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHV--FPHLPS 474 (522)
Q Consensus 404 ~~~~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~--l~~~~~ 474 (522)
+..|..+++|+.|++++| .+..++ .|..+++|+.|++++|.++.++ +++|+.|+|++|.|+++++ +..+++
T Consensus 164 ~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 243 (452)
T 3zyi_A 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243 (452)
T ss_dssp TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTT
T ss_pred HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccC
Confidence 668889999999999984 666665 4888999999999999998776 5789999999999998865 888999
Q ss_pred CCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 475 LESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 475 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
|+.|+|++|.++.+++..|..+++|+.|+|++|.++...
T Consensus 244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 999999999999998888999999999999999987544
No 32
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.7e-17 Score=167.12 Aligned_cols=148 Identities=24% Similarity=0.308 Sum_probs=132.7
Q ss_pred cEEEecCCCcccccC--cC-CCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccC
Q psy13451 368 QITNLSSLQLTSIHH--MH-CFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSH 442 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~ 442 (522)
+.|++++|.|+.++. +. .+++|+.|+|++|.+++..+..|..+++|+.|+|++|.|+.++ .|..+++|+.|+|++
T Consensus 42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 121 (361)
T 2xot_A 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121 (361)
T ss_dssp SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCC
Confidence 799999999999876 65 8999999999999999777788999999999999999999976 488999999999999
Q ss_pred CCCCccc------cCcccEEEcCCCCCCCCCC--C---CCCCCCCEEEccCCCCCCCChhhhcCCCC--ccEEEecCCCC
Q psy13451 443 NAPNIIL------CVYFQSLKLTHCSLSSLHV--F---PHLPSLESLDVSHNAIDHIEDSVFAKYEA--CVQVILTGNPV 509 (522)
Q Consensus 443 N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l---~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~--L~~L~L~~N~l 509 (522)
|.++.++ +++|+.|+|++|.|+.++. + ..+++|+.|+|++|.|+.++...+..++. ++.|+|++|++
T Consensus 122 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 122 NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 9998764 4789999999999999876 4 57899999999999999999888888887 48899999999
Q ss_pred cccccc
Q psy13451 510 SADMVV 515 (522)
Q Consensus 510 ~~~~~~ 515 (522)
.|+|.+
T Consensus 202 ~C~C~l 207 (361)
T 2xot_A 202 ECDCKL 207 (361)
T ss_dssp ECCHHH
T ss_pred cCCcCc
Confidence 999954
No 33
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=1.7e-16 Score=146.79 Aligned_cols=146 Identities=25% Similarity=0.263 Sum_probs=125.2
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCCCC
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHNAP 445 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N~l 445 (522)
+.+++++++++.+|. ...++|+.|++++|.+++..+..|..+++|+.|++++|.++.++. |..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 578888899988886 335689999999999986666678889999999999999998763 68889999999999998
Q ss_pred Cccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 446 NIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 446 ~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
+.++ .++|+.|++++|.|+.+++ +..+++|+.|+|++|.++++++..+..+++|+.|++++|++.|++.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 8665 4678999999999998876 7889999999999999999888788999999999999999998774
No 34
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=2.5e-17 Score=158.34 Aligned_cols=141 Identities=23% Similarity=0.272 Sum_probs=109.3
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI 447 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~ 447 (522)
+.|++++|+++.++.+..+++|+.|++++|.+++. +. +..+++|+.|++++|.++.++.+.. ++|+.|++++|.++.
T Consensus 44 ~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~ 120 (263)
T 1xeu_A 44 QNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRD 120 (263)
T ss_dssp SEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSB
T ss_pred cEEECcCCCcccchHHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCC
Confidence 47788888888777777788888888888888744 33 7778888888888888888776655 778888888888776
Q ss_pred cc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 448 IL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 448 ~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
++ +++|+.|++++|.|++++.+..+++|+.|+|++|.++++ ..+..+++|+.|++++|++++..
T Consensus 121 ~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 121 TDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred ChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 54 467788888888888876677778888888888888877 46777888888888888877654
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=3.4e-17 Score=160.94 Aligned_cols=182 Identities=16% Similarity=0.169 Sum_probs=151.3
Q ss_pred hhHHHHhcccccccCccCcchhhch--hhhhhhhcccccCCCCCcEEEecCCCcccccC-cCCCCcccEEEecCCCCCCc
Q psy13451 326 NEIILKRFDLLKTLDPLRLNYYKDS--ESKYKIETFIQTNPRANQITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNN 402 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~~~~~l--~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~ 402 (522)
++..+..+++|+.|++.++...... +..+. .+..+ +.|++++|.++.+|. +..+++|+.|++++|.+++.
T Consensus 44 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~~~L----~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~ 116 (306)
T 2z66_A 44 PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF---GTTSL----KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 116 (306)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH---SCSCC----CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESS
T ss_pred CHhHhhccccCCEEECCCCccCcccCcccccc---ccccc----CEEECCCCccccChhhcCCCCCCCEEECCCCccccc
Confidence 4455788999999999988765321 11111 12222 699999999999887 88999999999999999855
Q ss_pred cc-ccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCc--cc-----cCcccEEEcCCCCCCCCCC--CC
Q psy13451 403 CL-RHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNI--IL-----CVYFQSLKLTHCSLSSLHV--FP 470 (522)
Q Consensus 403 ~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~--~~-----~~~L~~L~Ls~n~l~~~~~--l~ 470 (522)
.+ ..+..+++|+.|++++|.++... .+..+++|+.|++++|.++. ++ +++|+.|++++|.++++++ +.
T Consensus 117 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 196 (306)
T 2z66_A 117 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196 (306)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc
Confidence 44 57889999999999999998753 47889999999999999875 33 4789999999999999854 88
Q ss_pred CCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 471 HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 471 ~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
.+++|+.|+|++|.++++++..+..+++|+.|++++|+++....
T Consensus 197 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 89999999999999999988889999999999999999986543
No 36
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=8.7e-17 Score=158.31 Aligned_cols=172 Identities=22% Similarity=0.288 Sum_probs=148.1
Q ss_pred HHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCC
Q psy13451 329 ILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLT 408 (522)
Q Consensus 329 ~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 408 (522)
....+++|+.|++.++.... ++. + ..+..+ +.|++++|.++.++.+..+++|+.|++++|.+++ ++ .+.
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~-l~~-~---~~l~~L----~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~ 104 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTT-IEG-V---QYLNNL----IGLELKDNQITDLAPLKNLTKITELELSGNPLKN-VS-AIA 104 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCC-CTT-G---GGCTTC----CEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC-CG-GGT
T ss_pred cHHHcCCcCEEEeeCCCccC-chh-h---hccCCC----CEEEccCCcCCCChhHccCCCCCEEEccCCcCCC-ch-hhc
Confidence 34678999999988876543 221 1 112222 6999999999999889999999999999999984 44 688
Q ss_pred CCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCC
Q psy13451 409 PLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484 (522)
Q Consensus 409 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~ 484 (522)
.+++|+.|++++|.++.++.+..+++|+.|++++|.++.++ +++|+.|++++|.+++++++..+++|+.|++++|.
T Consensus 105 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184 (308)
T ss_dssp TCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCc
Confidence 99999999999999999988999999999999999998765 57899999999999998888999999999999999
Q ss_pred CCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 485 IDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 485 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
++++++ +..+++|+.|++++|+++...
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc
Confidence 999874 889999999999999998654
No 37
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=2.2e-16 Score=150.56 Aligned_cols=145 Identities=22% Similarity=0.251 Sum_probs=131.4
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCC
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAP 445 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l 445 (522)
+.++++++.++.+|. .-.+.++.|++++|.+++..+..|..+++|+.|++++|.++.++ .+..+++|+.|++++|.+
T Consensus 17 ~~l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 17 KEVDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp TEEECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eEEecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 589999999999997 22379999999999999888888999999999999999999976 388999999999999999
Q ss_pred Cccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 446 NIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 446 ~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
+.++ +++|+.|+|++|.|+.+++ +..+++|+.|+|++|.|+.+++..|+.+++|+.|+|++|.++...
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 8765 4789999999999999887 788999999999999999999888999999999999999998554
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=7.4e-17 Score=167.57 Aligned_cols=128 Identities=22% Similarity=0.297 Sum_probs=116.8
Q ss_pred CcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCcccEEEc
Q psy13451 387 AHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKL 458 (522)
Q Consensus 387 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~L 458 (522)
++|+.|++++|.+++..|..|..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ +++|+.|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 57888899999988888888999999999999999999874 6889999999999999998764 578999999
Q ss_pred CCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 459 THCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 459 s~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
++|.++++++ +..+++|+.|+|++|.|+.+++..+..+++|+.|++++|+++|+|.
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999854 8899999999999999999998889999999999999999999986
No 39
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=3.9e-17 Score=154.60 Aligned_cols=171 Identities=15% Similarity=0.144 Sum_probs=126.0
Q ss_pred cccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCC-cccccC--cCCCCcccEEEecC-CCCCCcccccCCCC
Q psy13451 335 LLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQ-LTSIHH--MHCFAHCKQVDLSN-NPLTNNCLRHLTPL 410 (522)
Q Consensus 335 ~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~-l~~l~~--~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l 410 (522)
+|+.|++.++....-....+.. ++.+ +.|++++|. ++.++. +..+++|+.|++++ |.+++..+..|..+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~---l~~L----~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSN---LPNI----SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTT---CTTC----CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred cccEEEEeCCcceEECHHHccC---CCCC----cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence 6777887776654322221111 1122 588888886 888765 77888888888887 88885555677888
Q ss_pred CCccEEEcCCCCCCCCCCCCCCCCcC---EEEccCC-CCCccc------cCccc-EEEcCCCCCCCCCC--CCCCCCCCE
Q psy13451 411 VACESLKLTHCSLSSLHVFPHLPSLE---SLDVSHN-APNIIL------CVYFQ-SLKLTHCSLSSLHV--FPHLPSLES 477 (522)
Q Consensus 411 ~~L~~L~l~~n~l~~~~~~~~l~~L~---~L~ls~N-~l~~~~------~~~L~-~L~Ls~n~l~~~~~--l~~~~~L~~ 477 (522)
++|+.|++++|.++.+|.+..+++|+ .|++++| .++.++ +++|+ .|++++|.++.++. +.. ++|+.
T Consensus 105 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~ 183 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDA 183 (239)
T ss_dssp TTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEE
T ss_pred CCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCE
Confidence 88888888888888888777777777 8888888 777655 35677 88888888887765 444 68888
Q ss_pred EEccCCC-CCCCChhhhcCC-CCccEEEecCCCCcccc
Q psy13451 478 LDVSHNA-IDHIEDSVFAKY-EACVQVILTGNPVSADM 513 (522)
Q Consensus 478 L~Ls~N~-l~~~~~~~l~~l-~~L~~L~L~~N~l~~~~ 513 (522)
|+|++|. ++.+++..|..+ ++|+.|++++|+++...
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence 8888884 888877778888 88888888888887543
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.70 E-value=9e-18 Score=165.76 Aligned_cols=179 Identities=14% Similarity=0.082 Sum_probs=122.3
Q ss_pred hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCccc-ccC-cCCCCcccEEEecCCCCCCcc
Q psy13451 326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTS-IHH-MHCFAHCKQVDLSNNPLTNNC 403 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~-l~~-~~~l~~L~~L~Ls~n~l~~~~ 403 (522)
.+..+..+++|+.|+++++...+.++..+... ..+ ++|++++|.+++ +|. +..+++|+.|++++|.+++.+
T Consensus 93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l---~~L----~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 165 (313)
T 1ogq_A 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI---KTL----VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEECCEEECCGGGGGC---TTC----CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred CChhHhcCCCCCEEECcCCeeCCcCCHHHhCC---CCC----CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC
Confidence 44556777777777777776655444433221 111 477777777774 555 777777777777777777777
Q ss_pred cccCCCCC-CccEEEcCCCCCCC-CC-CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC-CCCCC
Q psy13451 404 LRHLTPLV-ACESLKLTHCSLSS-LH-VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV-FPHLP 473 (522)
Q Consensus 404 ~~~~~~l~-~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~-l~~~~ 473 (522)
|..+..++ +|+.|++++|.+++ +| .+..++ |+.|++++|.++... .++|+.|++++|.++...+ +..++
T Consensus 166 p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~ 244 (313)
T 1ogq_A 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244 (313)
T ss_dssp CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCT
T ss_pred CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccC
Confidence 77777776 77777777777764 33 355554 777777777776432 4667788888887775444 66777
Q ss_pred CCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 474 SLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 474 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
+|+.|+|++|.+++..+..+..+++|+.|+|++|++++.
T Consensus 245 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 888888888888766556777788888888888877643
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.70 E-value=4.6e-17 Score=170.30 Aligned_cols=148 Identities=26% Similarity=0.363 Sum_probs=116.2
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N 443 (522)
+.|++++|.++.++. +..+++|+.|++++|.+.+.+|..+....+|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus 179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 355555555555443 555566666666665555555554444557777777778888776 4788899999999999
Q ss_pred CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451 444 APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 444 ~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 515 (522)
.++.++ +++|+.|+|++|.++++++ +..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|++.|+|..
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 998765 4688999999999999865 88999999999999999999988899999999999999999999864
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=165.76 Aligned_cols=181 Identities=17% Similarity=0.236 Sum_probs=139.2
Q ss_pred hHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC---cCCCCcccEEEecCC-CCCCc
Q psy13451 327 EIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH---MHCFAHCKQVDLSNN-PLTNN 402 (522)
Q Consensus 327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n-~l~~~ 402 (522)
+..+..+++|+.||++++.........+.. ++.+ ++|++++|.++.+|. +..+++|+.|++++| .++..
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L----~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKP---LSSL----TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSSCCHHHHTT---CTTC----SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred HhhcCCCCCCCEEECCCCcCCcCCHhHhCC---CccC----CEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc
Confidence 344567778888887776655322221211 1222 588888888888765 777888888888888 46655
Q ss_pred ccccCCCCCCccEEEcCCCCCCCC-C-CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC------
Q psy13451 403 CLRHLTPLVACESLKLTHCSLSSL-H-VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV------ 468 (522)
Q Consensus 403 ~~~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~------ 468 (522)
.+..|..+++|+.|++++|.++.+ + .+..+++|+.|++++|.++.++ .++|+.|++++|.+++.+.
T Consensus 166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 245 (353)
T 2z80_A 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245 (353)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc
Confidence 567788888888888888888875 2 5788888888899888887655 5788999999999887542
Q ss_pred ---------------------------CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 469 ---------------------------FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 469 ---------------------------l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
+..+++|+.|+|++|.++.++...|+.+++|+.|++++|++.|+|.
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 3467899999999999999987778999999999999999999984
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.1e-16 Score=172.36 Aligned_cols=143 Identities=24% Similarity=0.333 Sum_probs=76.2
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEcc----
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVS---- 441 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls---- 441 (522)
+.|++++|.|+.+|. +..+++|+.|+|++|.+++..|..|..+++|+.|++++|.++.++ ++.+++|+.|+++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSCC
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCcc
Confidence 355555555555544 455555555555555555444445555555555555555555432 1222222222222
Q ss_pred ---------------CCCCCccc---cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEE
Q psy13451 442 ---------------HNAPNIIL---CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVI 503 (522)
Q Consensus 442 ---------------~N~l~~~~---~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 503 (522)
+|.++.++ +++|+.|++++|.+++.+.+..+++|+.|+|++|.++++++..|+.+++|+.|+
T Consensus 205 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 22222111 124555555555555544456666777777777777766656666666777777
Q ss_pred ecCCCCcc
Q psy13451 504 LTGNPVSA 511 (522)
Q Consensus 504 L~~N~l~~ 511 (522)
|++|.++.
T Consensus 285 Ls~N~l~~ 292 (597)
T 3oja_B 285 ISNNRLVA 292 (597)
T ss_dssp CTTSCCCE
T ss_pred CCCCCCCC
Confidence 77666654
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.70 E-value=1.4e-16 Score=162.08 Aligned_cols=143 Identities=25% Similarity=0.344 Sum_probs=83.1
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcC---------
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLE--------- 436 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~--------- 436 (522)
+.|++++|.++.+|. +..+++|+.|++++|.+++..+..|..+++|+.|++++|.++.++ +..+++|+
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeecccccc
Confidence 466666666666655 456666666666666666555555666666666666666665542 22222232
Q ss_pred ----------EEEccCCCCCccc---cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEE
Q psy13451 437 ----------SLDVSHNAPNIIL---CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVI 503 (522)
Q Consensus 437 ----------~L~ls~N~l~~~~---~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 503 (522)
.|++++|.++.++ .++|+.|++++|.+++.+.+..+++|+.|+|++|.++++++..+..+++|+.|+
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 2333333332222 134555666666665554456666777777777777766556666677777777
Q ss_pred ecCCCCcc
Q psy13451 504 LTGNPVSA 511 (522)
Q Consensus 504 L~~N~l~~ 511 (522)
+++|.++.
T Consensus 279 L~~n~l~~ 286 (390)
T 3o6n_A 279 ISNNRLVA 286 (390)
T ss_dssp CCSSCCCE
T ss_pred CCCCcCcc
Confidence 77766654
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=1.7e-17 Score=173.80 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=140.1
Q ss_pred hhHHHHhcccccccCccCcchhhchhhhhhhh----------cccccCCC-CC-cEEEecCCCcccccCcCCCCcccEEE
Q psy13451 326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIE----------TFIQTNPR-AN-QITNLSSLQLTSIHHMHCFAHCKQVD 393 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~----------~~l~~l~~-~~-~~L~ls~n~l~~l~~~~~l~~L~~L~ 393 (522)
++..+..+++|+.|++++|...+..+ +... +.+..++. +. +.|++++|.++.++. ..+++|+.|+
T Consensus 50 ~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~-~~l~~L~~L~ 126 (487)
T 3oja_A 50 SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC-SRGQGKKNIY 126 (487)
T ss_dssp CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEE-CCCSSCEEEE
T ss_pred CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCc-cccCCCCEEE
Confidence 45566777777777777776554322 1110 01111111 11 566666666666554 3467899999
Q ss_pred ecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCC-CCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCC
Q psy13451 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFP-HLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSL 466 (522)
Q Consensus 394 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~-~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~ 466 (522)
+++|.+++..|..|+.+++|+.|++++|.+++++ .+. .+++|+.|++++|.+++++ +++|+.|+|++|.|+++
T Consensus 127 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp CCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE
T ss_pred CCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCC
Confidence 9999999888888889999999999999998853 444 6889999999999998765 57899999999999998
Q ss_pred CC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 467 HV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 467 ~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
++ +..+++|+.|+|++|.|+++|. .++.+++|+.|++++|++.|.+.
T Consensus 207 ~~~~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 207 GPEFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CGGGGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCBCHHHH
T ss_pred CHhHcCCCCccEEEecCCcCcccch-hhccCCCCCEEEcCCCCCcCcch
Confidence 76 8888999999999999998774 58888999999999999997764
No 46
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=3e-16 Score=151.57 Aligned_cols=144 Identities=24% Similarity=0.304 Sum_probs=131.4
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCCCC
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHNAP 445 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N~l 445 (522)
+.|++++|.++.++.+..+++|+.|++++|.+++ + ..+..+++|++|++++|.++.++. +..+++|+.|++++|.+
T Consensus 44 ~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 44 DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121 (272)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eeeeeCCCCcccccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcC
Confidence 5899999999999999999999999999999985 3 468899999999999999999864 78999999999999999
Q ss_pred Cccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 446 NIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 446 ~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
+.++ +++|+.|++++|.++++++ +..+++|+.|++++|.++++++..++.+++|+.|++++|.++...
T Consensus 122 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 8765 4689999999999999887 789999999999999999999888999999999999999998644
No 47
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=1.3e-16 Score=170.74 Aligned_cols=172 Identities=19% Similarity=0.228 Sum_probs=148.0
Q ss_pred HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCC
Q psy13451 330 LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTP 409 (522)
Q Consensus 330 l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 409 (522)
+..+++|+.|++.++.... ++. + ..++.+ +.|+|++|.|++++++..+++|+.|+|++|.+++ +| .+..
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~~-l---~~l~~L----~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~ 107 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQG-I---QYLPNV----TKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SLKD 107 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CTT-G---GGCTTC----CEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TSTT
T ss_pred hhcCCCCCEEECcCCCCCC-ChH-H---ccCCCC----CEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hhcc
Confidence 5788999999988876443 221 1 122222 5999999999999889999999999999999984 44 6899
Q ss_pred CCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCC
Q psy13451 410 LVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI 485 (522)
Q Consensus 410 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l 485 (522)
+++|+.|+|++|.++.++.+..+++|+.|+|++|.++.++ +++|+.|+|++|.|++++++..+++|+.|+|++|.|
T Consensus 108 l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp CTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred CCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCC
Confidence 9999999999999999998999999999999999998765 588999999999999988899999999999999999
Q ss_pred CCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 486 DHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 486 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
++++ .+..+++|+.|+|++|++.....
T Consensus 188 ~~l~--~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 188 SDLR--ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CBCG--GGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCh--HHccCCCCCEEEccCCcCcCCcc
Confidence 9974 68999999999999999876543
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.69 E-value=1.1e-16 Score=174.81 Aligned_cols=189 Identities=21% Similarity=0.207 Sum_probs=144.7
Q ss_pred hHHHHhcccccccCccCcchhhchhh-hhhhhc----------ccccCC------CCC-cEEEecCCCccc---ccC-cC
Q psy13451 327 EIILKRFDLLKTLDPLRLNYYKDSES-KYKIET----------FIQTNP------RAN-QITNLSSLQLTS---IHH-MH 384 (522)
Q Consensus 327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~-~~~~~~----------~l~~l~------~~~-~~L~ls~n~l~~---l~~-~~ 384 (522)
+..+..+++|+.|+++++.....++. .+.... .+..+. .+. +.|++++|.++. +|. +.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 45567788888888877766543321 111100 011110 012 567777776653 344 77
Q ss_pred CCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC----------CCCCCCCcCEEEccCCCCCccc-----
Q psy13451 385 CFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH----------VFPHLPSLESLDVSHNAPNIIL----- 449 (522)
Q Consensus 385 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~ls~N~l~~~~----- 449 (522)
.+++|+.|++++|.+++..+..|.++++|+.|++++|.++.++ .+..+++|+.|++++|.++.++
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 8889999999999999777777889999999999999988652 2678899999999999998776
Q ss_pred -cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhc-CCCCccEEEecCCCCcccccc
Q psy13451 450 -CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFA-KYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 450 -~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~ 515 (522)
+++|+.|++++|.++.+++ +..+++|+.|+|++|.++.+++..++ .+++|+.|++++|++.|+|..
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 3678999999999999886 78899999999999999999988787 789999999999999999963
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=3.2e-17 Score=162.15 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=140.5
Q ss_pred hhHHHHhcccccccCccCcchhhchhhhhhhh----------cccccCCC-CC-cEEEecCCCcccccCcCCCCcccEEE
Q psy13451 326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIE----------TFIQTNPR-AN-QITNLSSLQLTSIHHMHCFAHCKQVD 393 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~----------~~l~~l~~-~~-~~L~ls~n~l~~l~~~~~l~~L~~L~ 393 (522)
.+..+..+++|+.|+++++......+ +... +.+..++. +. +.|++++|.++.++. ..+++|+.|+
T Consensus 50 ~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~ 126 (317)
T 3o53_A 50 SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC-SRGQGKKNIY 126 (317)
T ss_dssp CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEE-CCCSSCEEEE
T ss_pred CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCc-cccCCCCEEE
Confidence 56778888888888888877654222 1110 11111111 11 456666666666544 3467889999
Q ss_pred ecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CC-CCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCC
Q psy13451 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VF-PHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSL 466 (522)
Q Consensus 394 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~-~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~ 466 (522)
+++|.+++..+..+..+++|+.|++++|.++.++ .+ ..+++|+.|++++|.++.++ .++|+.|++++|.++++
T Consensus 127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l 206 (317)
T 3o53_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM 206 (317)
T ss_dssp CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEE
T ss_pred CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcc
Confidence 9999998777778888999999999999998863 34 46789999999999998765 57899999999999988
Q ss_pred CC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 467 HV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 467 ~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
++ +..+++|+.|+|++|.|+.++. .+..+++|+.|++++|++.|++.
T Consensus 207 ~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp CGGGGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCCBHHHH
T ss_pred hhhhcccCcccEEECcCCcccchhh-HhhcCCCCCEEEccCCCccCcCH
Confidence 76 7888999999999999998874 57889999999999999997654
No 50
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.8e-16 Score=145.32 Aligned_cols=140 Identities=18% Similarity=0.282 Sum_probs=113.6
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCC--CCCCCCCCCcCEEEccCCCC
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS--LHVFPHLPSLESLDVSHNAP 445 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~ls~N~l 445 (522)
+.|++++|.++.+|.+..+++|+.|++++|.++ .+..+..+++|+.|++++|.++. ++.++.+++|+.|++++|.+
T Consensus 47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred cEEeccCCCccChHHHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence 378888888888888888888888888888766 33467888888888888888886 45688888888888888888
Q ss_pred Cccc------cCcccEEEcCCCC-CCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451 446 NIIL------CVYFQSLKLTHCS-LSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511 (522)
Q Consensus 446 ~~~~------~~~L~~L~Ls~n~-l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 511 (522)
+... +++|+.|++++|. +++++.+..+++|+.|++++|.+++++ .+..+++|+.|++++|+++.
T Consensus 125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 125 DDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp BGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred CcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 7522 5788899999997 888877888999999999999999876 68889999999999999864
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=3.3e-17 Score=161.67 Aligned_cols=180 Identities=11% Similarity=0.088 Sum_probs=149.9
Q ss_pred hhHHHHhcccccccCccC-cchhhchhhhhhhhcccccCCCCCcEEEecCCCccc-ccC-cCCCCcccEEEecCCCCCCc
Q psy13451 326 NEIILKRFDLLKTLDPLR-LNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTS-IHH-MHCFAHCKQVDLSNNPLTNN 402 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~-~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~-l~~-~~~l~~L~~L~Ls~n~l~~~ 402 (522)
.+..+..+++|+.|++.+ +...+.++..+.. +..+ ++|++++|.+++ +|. +..+++|++|++++|.+++.
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~---l~~L----~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 140 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK---LTQL----HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGGGG---CTTC----SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhHhc---CCCC----CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc
Confidence 455678899999999985 6666655554432 2222 599999999994 676 89999999999999999999
Q ss_pred ccccCCCCCCccEEEcCCCCCC-CCC-CCCCCC-CcCEEEccCCCCCccc-----cCcccEEEcCCCCCCCCCC--CCCC
Q psy13451 403 CLRHLTPLVACESLKLTHCSLS-SLH-VFPHLP-SLESLDVSHNAPNIIL-----CVYFQSLKLTHCSLSSLHV--FPHL 472 (522)
Q Consensus 403 ~~~~~~~l~~L~~L~l~~n~l~-~~~-~~~~l~-~L~~L~ls~N~l~~~~-----~~~L~~L~Ls~n~l~~~~~--l~~~ 472 (522)
+|..|..+++|++|++++|.++ .+| .+..++ +|+.|++++|.+++.. ...|+.|++++|.+++..+ +..+
T Consensus 141 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l 220 (313)
T 1ogq_A 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTT
T ss_pred CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcC
Confidence 9999999999999999999998 455 577787 9999999999987432 2349999999999987665 8899
Q ss_pred CCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 473 PSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 473 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
++|+.|+|++|.++..++. +..+++|+.|+|++|.+++..
T Consensus 221 ~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~ 260 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECC
T ss_pred CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcC
Confidence 9999999999999976644 788999999999999998544
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.68 E-value=1.3e-16 Score=158.45 Aligned_cols=173 Identities=20% Similarity=0.202 Sum_probs=144.3
Q ss_pred cccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC-cCCCCcccEEEecCCCCCCcccccCCCCC
Q psy13451 333 FDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLV 411 (522)
Q Consensus 333 l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 411 (522)
.+.++.|++.++.+. .++..+.. +..+ ++|++++|.++.+|. +..+++|+.|++++|.++ .+|..+..++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~---l~~L----~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~ 150 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFR---LSHL----QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLN 150 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGG---GTTC----SEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCT
T ss_pred ccceeEEEccCCCch-hcChhhhh---CCCC----CEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCc
Confidence 478889999887765 33332221 2222 599999999999988 899999999999999999 8898999999
Q ss_pred CccEEEcCCCCCC-CCC-CCC---------CCCCcCEEEccCCCCCccc-----cCcccEEEcCCCCCCCCCC-CCCCCC
Q psy13451 412 ACESLKLTHCSLS-SLH-VFP---------HLPSLESLDVSHNAPNIIL-----CVYFQSLKLTHCSLSSLHV-FPHLPS 474 (522)
Q Consensus 412 ~L~~L~l~~n~l~-~~~-~~~---------~l~~L~~L~ls~N~l~~~~-----~~~L~~L~Ls~n~l~~~~~-l~~~~~ 474 (522)
+|+.|++++|.+. .+| .+. .+++|+.|++++|.++.++ +++|+.|++++|.++++++ +..+++
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~ 230 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence 9999999997544 455 233 4899999999999998775 5789999999999999876 888999
Q ss_pred CCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 475 LESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 475 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
|+.|+|++|.+.+..+..++.+++|+.|+|++|++.....
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 9999999999888777889999999999999998765543
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=1.6e-16 Score=170.95 Aligned_cols=182 Identities=22% Similarity=0.279 Sum_probs=104.3
Q ss_pred hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcc
Q psy13451 326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNC 403 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~ 403 (522)
++..++.+++|+.|+++++.+.......+.. ++.+ +.|++++|.++++++ +..+++|+.|++++|.+++..
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~---l~~L----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHN---TPKL----TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---CTTC----CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc---CCCC----CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence 4445566667777766665444211111111 1111 699999999999765 889999999999999988543
Q ss_pred cccCCCC-------------------------------------CCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCC
Q psy13451 404 LRHLTPL-------------------------------------VACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPN 446 (522)
Q Consensus 404 ~~~~~~l-------------------------------------~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~ 446 (522)
+..+..+ ++|+.|++++|.+++++.+..+++|+.|++++|.++
T Consensus 188 ~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccC
Confidence 2222211 124444444444444444555566666666666655
Q ss_pred ccc------cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChh--------------------hhcCCCCc
Q psy13451 447 IIL------CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDS--------------------VFAKYEAC 499 (522)
Q Consensus 447 ~~~------~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~--------------------~l~~l~~L 499 (522)
+++ +++|+.|+|++|.+++++. +..+++|+.|+|++|.++.++.. .+..+++|
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L 347 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTL 347 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCC
T ss_pred CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCC
Confidence 432 3455566666666555544 34455555555555555544321 14455666
Q ss_pred cEEEecCCCCccccc
Q psy13451 500 VQVILTGNPVSADMV 514 (522)
Q Consensus 500 ~~L~L~~N~l~~~~~ 514 (522)
+.|++++|+++|++.
T Consensus 348 ~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 348 KNLTLSHNDWDCNSL 362 (597)
T ss_dssp SEEECCSSCEEHHHH
T ss_pred CEEEeeCCCCCChhH
Confidence 666777777766654
No 54
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=2.9e-16 Score=153.23 Aligned_cols=141 Identities=22% Similarity=0.260 Sum_probs=130.3
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI 447 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~ 447 (522)
+.|++++|.++.++.+..+++|+.|++++|.+++..+ +..+++|+.|++++|.++.++.+..+++|+.|++++|.++.
T Consensus 49 ~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~ 126 (291)
T 1h6t_A 49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD 126 (291)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC
T ss_pred cEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCC
Confidence 4899999999999889999999999999999995444 89999999999999999999999999999999999999987
Q ss_pred cc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 448 IL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 448 ~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
++ +++|+.|++++|.+++++.+..+++|+.|++++|.++++++ +..+++|+.|++++|.++..
T Consensus 127 ~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 127 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred ChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence 65 58899999999999999778999999999999999999875 89999999999999999864
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.67 E-value=2e-16 Score=157.24 Aligned_cols=145 Identities=18% Similarity=0.211 Sum_probs=115.3
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCC--cccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N 443 (522)
+.|++++|.++.++. +..+++|+.|++++|.++. ..+..|..+++|+.|++++|.++.+|... .++|+.|++++|
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n 202 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGN 202 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTS
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCC
Confidence 678888888877665 7778888888888888753 45667778888888888888888876422 278889999999
Q ss_pred CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 444 APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 444 ~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
.++.++ +++|+.|++++|.++++++ +..+++|+.|+|++|.++.++ ..+..+++|+.|++++|+++....
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC-TTTTTCSSCCEEECCSSCCCCCCT
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC-hhhccCCCcCEEECCCCcCCccCh
Confidence 887653 4678999999999988765 778889999999999999776 457888999999999999886543
No 56
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.67 E-value=3.8e-16 Score=156.24 Aligned_cols=145 Identities=17% Similarity=0.209 Sum_probs=114.9
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI 447 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~ 447 (522)
+.|++++|.++.++.+..+++|+.|++++|.+++..+ +..+++|+.|++++|.++.++.+..+++|+.|++++|.++.
T Consensus 180 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp SEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred CEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC
Confidence 5777777777777767777777777777777774333 67778888888888888887777888888888888888876
Q ss_pred cc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 448 IL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 448 ~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
++ +++|+.|++++|.+++++.+..+++|+.|++++|.+++.++..++.+++|+.|++++|++++...
T Consensus 258 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 258 INAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred ChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 54 57788888888888887667778888888888888888877788888888888888888876543
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=167.28 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=130.8
Q ss_pred cEEEecCCCccc-ccC-cCCCCcccEEEecCCCCCC--cccccCCCCCCccEEEcCCCCCCC-CC--CCCCCCCcCEEEc
Q psy13451 368 QITNLSSLQLTS-IHH-MHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSS-LH--VFPHLPSLESLDV 440 (522)
Q Consensus 368 ~~L~ls~n~l~~-l~~-~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l 440 (522)
+.|++++|.+++ +|. +..+++|+.|++++|.+++ .+|..+..+++|+.|++++|.++. +| .+..+++|+.|++
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 799999999998 455 8899999999999999986 455778899999999999999998 76 4788899999999
Q ss_pred cCCCCCccc----cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451 441 SHNAPNIIL----CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 441 s~N~l~~~~----~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 515 (522)
++|.+++.. +++|+.|++++|.|+.++. +..+++|+.|+|++|.++.++...+..+++|+.|++++|+++|+|..
T Consensus 407 s~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 407 SSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 999996432 2689999999999998886 66899999999999999999877799999999999999999999864
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=1.2e-16 Score=157.56 Aligned_cols=173 Identities=16% Similarity=0.126 Sum_probs=109.4
Q ss_pred hcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC-cCCC-----CcccEEEecCCCCCCcccc
Q psy13451 332 RFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH-MHCF-----AHCKQVDLSNNPLTNNCLR 405 (522)
Q Consensus 332 ~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~-~~~l-----~~L~~L~Ls~n~l~~~~~~ 405 (522)
.+++|+.|+++++...+..+..+.. ..++.+ +.|++++|.++++|. +..+ ++|++|++++|.+++..|.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~-~~l~~L----~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLE-ATGPDL----NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSS-CCSCCC----SEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred CcCCccEEEccCCcccchhHHHHHH-hcCCCc----cEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 5778888887777665544432210 111111 577777777777655 4444 6777777777777766667
Q ss_pred cCCCCCCccEEEcCCCCCCCC----CC--CCCCCCcCEEEccCCCCCccc---------cCcccEEEcCCCCCCCCCC--
Q psy13451 406 HLTPLVACESLKLTHCSLSSL----HV--FPHLPSLESLDVSHNAPNIIL---------CVYFQSLKLTHCSLSSLHV-- 468 (522)
Q Consensus 406 ~~~~l~~L~~L~l~~n~l~~~----~~--~~~l~~L~~L~ls~N~l~~~~---------~~~L~~L~Ls~n~l~~~~~-- 468 (522)
.|+.+++|+.|++++|.+.+. +. +..+++|+.|++++|.++.++ .++|+.|++++|.+++.++
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 777777777777777776542 12 366777777777777776332 2567777777777776442
Q ss_pred -CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 469 -FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 469 -l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
+..+++|+.|+|++|.|+.++.. +. ++|+.|+|++|+++..
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~~ip~~-~~--~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLKQVPKG-LP--AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp CCCCCTTCCEEECTTSCCSSCCSS-CC--SEEEEEECCSSCCCSC
T ss_pred hhhhcCCCCEEECCCCccChhhhh-cc--CCceEEECCCCCCCCC
Confidence 44566777777777777765532 22 5666677777666543
No 59
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=1.9e-15 Score=140.60 Aligned_cols=187 Identities=13% Similarity=0.055 Sum_probs=165.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchh
Q psy13451 28 METIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWF 107 (522)
Q Consensus 28 ~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~ 107 (522)
..........|.+ ++|+..+++++.++|++..+|..++.++...+. +++++..++++++.+|++..+|.
T Consensus 9 ~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~~~P~~~~a~~ 77 (217)
T 2pl2_A 9 LRLGVQLYALGRY-DAALTLFERALKENPQDPEALYWLARTQLKLGL----------VNPALENGKTLVARTPRYLGGYM 77 (217)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHH
Confidence 3445556667776 889999999999999999999999999999988 79999999999999999999999
Q ss_pred hHHHHHHHhc--------CCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhh
Q psy13451 108 QRCYVLDHIS--------RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWH 179 (522)
Q Consensus 108 ~R~~il~~l~--------~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~ 179 (522)
.++.++.... ..+++++++..++++++.+|++..+|..++.++...+. ++++++.++++++.+ .+..+|.
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE-RDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcc-cchHHHH
Confidence 9999887641 01678999999999999999999999999999999998 799999999999999 9999999
Q ss_pred HHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 180 YRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 180 ~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
.++.++... +++++++..+++++..+|++..+|..+..++...++...
T Consensus 156 ~la~~~~~~------------g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 156 ALAELYLSM------------GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHHHHHH------------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHHHHHHc------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 999999988 889999999999999999999999999999988877655
No 60
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=2.7e-16 Score=160.02 Aligned_cols=183 Identities=22% Similarity=0.257 Sum_probs=102.0
Q ss_pred hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcc
Q psy13451 326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNC 403 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~ 403 (522)
++..+..+++|+.|++.++.... ++.... ..++.+ +.|++++|.++.++. +..+++|+.|++++|.+++..
T Consensus 109 ~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 181 (390)
T 3o6n_A 109 PPHVFQNVPLLTVLVLERNDLSS-LPRGIF--HNTPKL----TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181 (390)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC-CCTTTT--TTCTTC----CEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred CHHHhcCCCCCCEEECCCCccCc-CCHHHh--cCCCCC----cEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence 34455666777777766654432 111100 011111 799999999999765 889999999999999987543
Q ss_pred cccCCCC-------------------------------------CCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCC
Q psy13451 404 LRHLTPL-------------------------------------VACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPN 446 (522)
Q Consensus 404 ~~~~~~l-------------------------------------~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~ 446 (522)
...+..+ ++|+.|++++|.++.++.+..+++|+.|++++|.++
T Consensus 182 ~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCC
Confidence 2222211 134444444444444444455555666666666555
Q ss_pred ccc------cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChh--------------------hhcCCCCc
Q psy13451 447 IIL------CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDS--------------------VFAKYEAC 499 (522)
Q Consensus 447 ~~~------~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~--------------------~l~~l~~L 499 (522)
.+. +++|+.|++++|.+++++. +..+++|+.|+|++|.++.++.. .+..+++|
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L 341 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTL 341 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCC
T ss_pred CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhhccC
Confidence 432 3445555555555555443 33445555555555555444321 13455666
Q ss_pred cEEEecCCCCcccccc
Q psy13451 500 VQVILTGNPVSADMVV 515 (522)
Q Consensus 500 ~~L~L~~N~l~~~~~~ 515 (522)
+.|++++|++.|++..
T Consensus 342 ~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 342 KNLTLSHNDWDCNSLR 357 (390)
T ss_dssp SEEECCSSCEEHHHHH
T ss_pred CEEEcCCCCccchhHH
Confidence 6666667776666543
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=1.7e-15 Score=136.47 Aligned_cols=163 Identities=12% Similarity=0.036 Sum_probs=154.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451 31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC 110 (522)
Q Consensus 31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~ 110 (522)
.......|++ ++|++.++++|.++|++..+|..++.++...+. +++++..+..++..+|++..+|...+
T Consensus 12 G~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 12 GDKKRTKGDF-DGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL----------PNDAIESLKKFVVLDTTSAEAYYILG 80 (184)
T ss_dssp HHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 4445667777 889999999999999999999999999999988 79999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCC
Q psy13451 111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYP 190 (522)
Q Consensus 111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~ 190 (522)
.+.... .+++.++..+.+++..+|.+..+|..++.+....+. +++++++++++++.+|.+..+|..++.++..+
T Consensus 81 ~~~~~~---~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~-- 154 (184)
T 3vtx_A 81 SANFMI---DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE-HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK-- 154 (184)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred HHHHHc---CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC-chhHHHHHHHHHHhcchhhhHHHHHHHHHHHC--
Confidence 999998 899999999999999999999999999999999998 79999999999999999999999999999988
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHhcCCCC
Q psy13451 191 DPNNHLPIEQDKYVNEFSMVESAVFTEPKD 220 (522)
Q Consensus 191 ~~~~~~~~~~~~~~~el~~~~~ai~~~p~~ 220 (522)
+.++++++++++|+..+|++
T Consensus 155 ----------g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 155 ----------GLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp ----------TCHHHHHHHHHHHHHTTHHH
T ss_pred ----------CCHHHHHHHHHHHHhCCccC
Confidence 88999999999999999986
No 62
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=1.7e-16 Score=171.05 Aligned_cols=180 Identities=20% Similarity=0.175 Sum_probs=145.2
Q ss_pred hHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC---cCCCCcccEEEecCCCCCCcc
Q psy13451 327 EIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH---MHCFAHCKQVDLSNNPLTNNC 403 (522)
Q Consensus 327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n~l~~~~ 403 (522)
+..+..+++|+.|+++++.... ++..+. .+..+ +.|++++|.+++++. +..+++|+.|++++|.+++..
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~-~~~~~~---~l~~L----~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAII-MSANFM---GLEEL----QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEE-ECCCCT---TCTTC----CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred hhhhccCCcccEeECCCCcccc-chhhcc---CCCCC----CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence 4566677777777776665332 111111 11111 689999999888632 788999999999999999888
Q ss_pred cccCCCCCCccEEEcCCCCCCC--CC-CCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCC
Q psy13451 404 LRHLTPLVACESLKLTHCSLSS--LH-VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHL 472 (522)
Q Consensus 404 ~~~~~~l~~L~~L~l~~n~l~~--~~-~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~ 472 (522)
|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++|.++.++ +++|+.|++++|.++++++ +..+
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 520 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence 8899999999999999999986 44 5889999999999999998764 4789999999999999854 8899
Q ss_pred CCCCEEEccCCCCCCCChhhhcCCC-CccEEEecCCCCcccccc
Q psy13451 473 PSLESLDVSHNAIDHIEDSVFAKYE-ACVQVILTGNPVSADMVV 515 (522)
Q Consensus 473 ~~L~~L~Ls~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~ 515 (522)
++|+.|+|++|.++.++.. +..++ +|+.|++++|++.|+|..
T Consensus 521 ~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 521 YSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999988754 88886 599999999999999864
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=1e-16 Score=158.06 Aligned_cols=174 Identities=19% Similarity=0.223 Sum_probs=141.1
Q ss_pred HhcccccccCccCcchhhchhhhhhhhcccccCCCCC-cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCc--ccc
Q psy13451 331 KRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN-QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNN--CLR 405 (522)
Q Consensus 331 ~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~-~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~--~~~ 405 (522)
..+++|+.|+++++..... +..+... .....+. ++|++++|.++.++. +..+++|+.|++++|.+.+. .|.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l---~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAEL---QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHH---HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHH---HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 7889999999999887665 3322211 1111123 699999999999874 89999999999999998765 233
Q ss_pred cC--CCCCCccEEEcCCCCCCCCCC-----CCCCCCcCEEEccCCCCCccc-------cCcccEEEcCCCCCCCCCC-CC
Q psy13451 406 HL--TPLVACESLKLTHCSLSSLHV-----FPHLPSLESLDVSHNAPNIIL-------CVYFQSLKLTHCSLSSLHV-FP 470 (522)
Q Consensus 406 ~~--~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~ls~N~l~~~~-------~~~L~~L~Ls~n~l~~~~~-l~ 470 (522)
.+ ..+++|+.|++++|.++.++. +..+++|+.|++++|.++... +++|+.|++++|.|+.++. +.
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~ 273 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc
Confidence 44 889999999999999996542 357789999999999998743 3689999999999998876 44
Q ss_pred CCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 471 HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 471 ~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
++|+.|+|++|.|++++. +..+++|+.|++++|+++..
T Consensus 274 --~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp --SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred --CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence 899999999999999953 88999999999999999864
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.67 E-value=3.2e-16 Score=155.93 Aligned_cols=143 Identities=16% Similarity=0.231 Sum_probs=87.0
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCC--cccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N 443 (522)
+.|++++|.++.++. +..+++|+.|++++|.++. ..+..+..+ +|+.|++++|.++.+|.. ..++|+.|++++|
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n 203 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD-LPETLNELHLDHN 203 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS-SCSSCSCCBCCSS
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc-ccCCCCEEECCCC
Confidence 344555555544443 4445555555555555431 333444444 455555555555544421 1146677777777
Q ss_pred CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 444 APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 444 ~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
.++.++ +++|+.|++++|.++++++ +..+++|+.|+|++|.++.++. .+..+++|+.|++++|+++...
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT-TGGGCTTCCEEECCSSCCCBCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh-hhhcCccCCEEECCCCCCCccC
Confidence 766544 3567778888888777765 6777788888888888887663 4777888888888888887554
No 65
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.66 E-value=3.1e-16 Score=156.83 Aligned_cols=168 Identities=18% Similarity=0.158 Sum_probs=138.5
Q ss_pred HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCC
Q psy13451 330 LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTP 409 (522)
Q Consensus 330 l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 409 (522)
+..+++|+.|++.++....... ...+..+ +.+++++|.++.++.+..+++|+.|++++|.+++. +. +..
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L----~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~~-~~~ 241 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP-----LASLTSL----HYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL-SP-LAN 241 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG-----GGGCTTC----CEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GG-GTT
T ss_pred hccCCCCCEEEccCCccccccc-----ccCCCcc----ceeecccCCCCCCchhhcCCcCCEEEccCCccCCC-cc-hhc
Confidence 5667777777776665432111 1111222 69999999999988888999999999999999854 43 889
Q ss_pred CCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCC
Q psy13451 410 LVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHN 483 (522)
Q Consensus 410 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N 483 (522)
+++|+.|++++|.++.++.+..+++|+.|++++|.++.++ +++|+.|++++|.+++.++ +..+++|+.|++++|
T Consensus 242 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred CCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 9999999999999999988999999999999999998765 5889999999999998765 788999999999999
Q ss_pred CCCCCChhhhcCCCCccEEEecCCCCc
Q psy13451 484 AIDHIEDSVFAKYEACVQVILTGNPVS 510 (522)
Q Consensus 484 ~l~~~~~~~l~~l~~L~~L~L~~N~l~ 510 (522)
.++++++ +..+++|+.|++++|+++
T Consensus 322 ~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 322 HITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccccccC--hhhhhccceeehhhhccc
Confidence 9999875 889999999999999986
No 66
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.66 E-value=2.8e-16 Score=174.05 Aligned_cols=78 Identities=27% Similarity=0.232 Sum_probs=40.6
Q ss_pred cEEEecCCCccc-ccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCC-CC-CCCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTS-IHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS-LH-VFPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~-l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~ls~N 443 (522)
+.|++++|.+++ +|. +..+++|+.|++++|.+++.+|..++.+++|+.|++++|.+++ +| .+..+++|+.|++++|
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 455555555553 333 5555555555555555555555555555555555555555543 22 3444444555555444
Q ss_pred CC
Q psy13451 444 AP 445 (522)
Q Consensus 444 ~l 445 (522)
.+
T Consensus 549 ~l 550 (768)
T 3rgz_A 549 LF 550 (768)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 67
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.66 E-value=1.4e-16 Score=171.76 Aligned_cols=147 Identities=20% Similarity=0.223 Sum_probs=103.2
Q ss_pred cEEEecCCCccccc-C--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCC-----CCCCCCCCcCEEE
Q psy13451 368 QITNLSSLQLTSIH-H--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL-----HVFPHLPSLESLD 439 (522)
Q Consensus 368 ~~L~ls~n~l~~l~-~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~ 439 (522)
+.|++++|.++... . +..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++. ..+..+++|+.|+
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence 56666666666532 1 55666777777777777666666666677777777777766541 1356667777777
Q ss_pred ccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451 440 VSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511 (522)
Q Consensus 440 ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 511 (522)
+++|.++.++ +++|+.|++++|.+++.++ +..+++| .|+|++|.++++++..++.+++|+.|++++|++.|
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 7777776553 3567777777777776654 6777777 78888888887777777888888999999999999
Q ss_pred cccc
Q psy13451 512 DMVV 515 (522)
Q Consensus 512 ~~~~ 515 (522)
+|..
T Consensus 562 ~c~~ 565 (606)
T 3t6q_A 562 TCSN 565 (606)
T ss_dssp SGGG
T ss_pred cCCc
Confidence 8863
No 68
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=6e-16 Score=161.79 Aligned_cols=145 Identities=26% Similarity=0.369 Sum_probs=85.8
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N 443 (522)
+.|++++|.++.++. +..+++|+.|++++|.+++..+..|..+++|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 456666666655433 555666666666666666555555666666666666666666554 2555556666666666
Q ss_pred CCCccc------cC------------------------cccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChh
Q psy13451 444 APNIIL------CV------------------------YFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDS 491 (522)
Q Consensus 444 ~l~~~~------~~------------------------~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~ 491 (522)
.+..++ ++ +|+.|++++|.++.++. +..+++|+.|+|++|.++.+++.
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence 554332 11 34555555555555553 55666666677776666666666
Q ss_pred hhcCCCCccEEEecCCCCccc
Q psy13451 492 VFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 492 ~l~~l~~L~~L~L~~N~l~~~ 512 (522)
.|..+++|+.|+|++|.++..
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEE
T ss_pred hccccccCCEEECCCCccceE
Confidence 666666777777777766543
No 69
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.65 E-value=2.8e-16 Score=173.96 Aligned_cols=146 Identities=23% Similarity=0.222 Sum_probs=127.7
Q ss_pred cEEEecCCCccc-ccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCC-CC-----------------
Q psy13451 368 QITNLSSLQLTS-IHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS-LH----------------- 427 (522)
Q Consensus 368 ~~L~ls~n~l~~-l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~----------------- 427 (522)
+.|++++|.+++ +|. +..+++|+.|++++|.+++.+|..++.+++|+.|++++|.+++ +|
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 699999999995 666 8899999999999999999999999999999999999998763 22
Q ss_pred ------------------------------------------------------CCCCCCCcCEEEccCCCCCcc-c---
Q psy13451 428 ------------------------------------------------------VFPHLPSLESLDVSHNAPNII-L--- 449 (522)
Q Consensus 428 ------------------------------------------------------~~~~l~~L~~L~ls~N~l~~~-~--- 449 (522)
.+..+++|+.|++++|.+++. |
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence 234467899999999999853 3
Q ss_pred --cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 450 --CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 450 --~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
++.|+.|+|++|.+++..+ ++.+++|+.|||++|++++..+..++.++.|+.|++++|++++..
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 5789999999999997555 899999999999999999888889999999999999999987654
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=5.9e-16 Score=149.74 Aligned_cols=172 Identities=22% Similarity=0.266 Sum_probs=137.9
Q ss_pred ccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCC
Q psy13451 334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLV 411 (522)
Q Consensus 334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 411 (522)
++|+.|+++++.........+.. +..+ +.|++++|.++.++. +..+++|+.|++++|.+++..+..|..++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~---l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFS---FPEL----QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTT---CTTC----SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred CCccEEECCCCcccccCHhHhcc---ccCC----cEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 46889998887665433222211 2222 699999999999875 88999999999999999977778899999
Q ss_pred CccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCcc--c-----cCcccEEEcCCCCCCCCCC--CCCCCCCC----
Q psy13451 412 ACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNII--L-----CVYFQSLKLTHCSLSSLHV--FPHLPSLE---- 476 (522)
Q Consensus 412 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~--~-----~~~L~~L~Ls~n~l~~~~~--l~~~~~L~---- 476 (522)
+|+.|++++|.++.++ .+..+++|+.|++++|.++.+ + +++|+.|++++|.++++++ +..+++|+
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 9999999999999876 488999999999999999863 2 4789999999999998764 44445555
Q ss_pred EEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 477 SLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 477 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
.|++++|.++.+++..+.. .+|+.|++++|.++...
T Consensus 181 ~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVP 216 (276)
T ss_dssp EEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCC
T ss_pred eeecCCCcccccCccccCC-CcccEEECCCCceeecC
Confidence 8999999999988665554 48999999999987544
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.65 E-value=1.1e-15 Score=151.92 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=132.9
Q ss_pred hHHHHhcccccccCccCcchhhchhhhhh--------hhcccccCC------CCC-cEEEecCCCccc--c-cC-cCCCC
Q psy13451 327 EIILKRFDLLKTLDPLRLNYYKDSESKYK--------IETFIQTNP------RAN-QITNLSSLQLTS--I-HH-MHCFA 387 (522)
Q Consensus 327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~--------~~~~l~~l~------~~~-~~L~ls~n~l~~--l-~~-~~~l~ 387 (522)
+..+..+++|+.|+++++.... ++.... ..+.+..+. .+. +.|++++|.++. + +. +..++
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCSB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred HHHhcCCCCCCEEECCCCcCCc-cChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 4556777778888777765442 111110 001111111 012 689999998864 2 33 77889
Q ss_pred cccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCcccEEEcC
Q psy13451 388 HCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLT 459 (522)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls 459 (522)
+|+.|++++|.++ .+|..+. ++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ +++|+.|+++
T Consensus 172 ~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 172 KLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248 (330)
T ss_dssp TCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred CcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence 9999999999988 5665544 78999999999988863 5788899999999999988654 4678999999
Q ss_pred CCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhhcC------CCCccEEEecCCCCccc
Q psy13451 460 HCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVFAK------YEACVQVILTGNPVSAD 512 (522)
Q Consensus 460 ~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~------l~~L~~L~L~~N~l~~~ 512 (522)
+|.++.++. +..+++|+.|++++|.|+.++...|.. .+.|+.|++++|++.+.
T Consensus 249 ~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 249 NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp SSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred CCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 999998876 888889999999999999988766653 36788999999998653
No 72
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=1.5e-15 Score=138.68 Aligned_cols=130 Identities=21% Similarity=0.251 Sum_probs=111.3
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCC
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAP 445 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l 445 (522)
+.+++++|+++.+|. .-.++|+.|++++|.++ .+|..|..+++|+.|++++|.|+.++ .|..+++|+.|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 578999999999987 22468999999999998 77888999999999999999999886 488888888888888877
Q ss_pred CccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451 446 NIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 446 ~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 515 (522)
+.++.. .|..+++|+.|+|++|.|+.++...|..+++|+.|+|++|++.|+|..
T Consensus 91 ~~i~~~----------------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 91 RCIPPR----------------TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CBCCTT----------------TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CEeCHH----------------HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 655422 267788999999999999999988899999999999999999999864
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=1.1e-15 Score=163.15 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=131.2
Q ss_pred cEEEecCCCccc-ccC-cCCCCcccEEEecCCCCCC--cccccCCCCCCccEEEcCCCCCCC-CC--CCCCCCCcCEEEc
Q psy13451 368 QITNLSSLQLTS-IHH-MHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSS-LH--VFPHLPSLESLDV 440 (522)
Q Consensus 368 ~~L~ls~n~l~~-l~~-~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l 440 (522)
+.|++++|.+++ +|. +..+++|+.|++++|.+++ ..|..|..+++|+.|++++|.++. +| .+..+++|+.|++
T Consensus 356 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l 435 (562)
T 3a79_B 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435 (562)
T ss_dssp CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEEC
Confidence 799999999998 455 8899999999999999986 335678999999999999999998 66 3788999999999
Q ss_pred cCCCCCccc----cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451 441 SHNAPNIIL----CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 441 s~N~l~~~~----~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 515 (522)
++|.+++.. +++|+.|++++|.|+.++. +..+++|+.|+|++|.++.++...+..+++|+.|++++|++.|+|..
T Consensus 436 ~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 436 SSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 999997533 2689999999999999886 66899999999999999999876799999999999999999999854
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=4.9e-16 Score=153.57 Aligned_cols=178 Identities=16% Similarity=0.105 Sum_probs=133.7
Q ss_pred hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccc
Q psy13451 326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLR 405 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~ 405 (522)
+...+..+++|+.||++++......+..+... ..+ +.|++++|.+++++++..+++|+.|++++|.+++..+.
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L----~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~ 98 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPF---TKL----ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG 98 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC---TTC----CEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEEC
T ss_pred HHHHhccCCCCCEEECcCCccCcCCHHHhhCC---CcC----CEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCC
Confidence 34455677899999999987766444333222 222 47777777777665566667777777776665532110
Q ss_pred ----------------cCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc-------cCcccEEEcCC
Q psy13451 406 ----------------HLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL-------CVYFQSLKLTH 460 (522)
Q Consensus 406 ----------------~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~-------~~~L~~L~Ls~ 460 (522)
....+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ +++|+.|++++
T Consensus 99 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp TTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 0123567888888888888874 5777899999999999998643 47899999999
Q ss_pred CCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451 461 CSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511 (522)
Q Consensus 461 n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 511 (522)
|.++.++....+++|+.|+|++|.++.+++. +..+++|+.|+|++|.++.
T Consensus 179 N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp SCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE
T ss_pred CcCcccccccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccc
Confidence 9999987766789999999999999998864 8889999999999999984
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.64 E-value=5.9e-16 Score=165.41 Aligned_cols=178 Identities=19% Similarity=0.233 Sum_probs=146.9
Q ss_pred HhcccccccCccCcchhhch--hhhhhhhcccccCCCCCcEEEecCCCcccccC-cCCCCcccEEEecCCCCCCccc-cc
Q psy13451 331 KRFDLLKTLDPLRLNYYKDS--ESKYKIETFIQTNPRANQITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCL-RH 406 (522)
Q Consensus 331 ~~l~~L~~Ldl~~~~~~~~l--~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~ 406 (522)
..+++|+.|+++++...... +..+. .++.+ +.|++++|.++.++. +..+++|+.|++++|.+++..+ ..
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~~L----~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDF---GTTSL----KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHH---TCSCC----CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred ccCCCCCEEeCcCCccCcccccccccc---ccCcc----CEEECCCCccccccccccccCCCCEEEccCCccccccchhh
Confidence 56778888887776654321 11111 11222 689999999998876 8889999999999999986655 56
Q ss_pred CCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCc--cc-----cCcccEEEcCCCCCCCCCC--CCCCCCC
Q psy13451 407 LTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNI--IL-----CVYFQSLKLTHCSLSSLHV--FPHLPSL 475 (522)
Q Consensus 407 ~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~--~~-----~~~L~~L~Ls~n~l~~~~~--l~~~~~L 475 (522)
+..+++|+.|++++|.++... .+..+++|+.|++++|.++. ++ +++|+.|++++|.++++++ +..+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 889999999999999988753 57889999999999999862 33 5789999999999999854 8899999
Q ss_pred CEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451 476 ESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 476 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 515 (522)
+.|++++|.++++++..+..+++|+.|++++|+++|+|..
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999999988899999999999999999999864
No 76
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=6.3e-16 Score=165.45 Aligned_cols=141 Identities=23% Similarity=0.267 Sum_probs=130.6
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI 447 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~ 447 (522)
+.|++++|.++.++.+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.++.++.+..+++|+.|+|++|.+..
T Consensus 46 ~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~ 123 (605)
T 1m9s_A 46 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD 123 (605)
T ss_dssp CCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC
T ss_pred CEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC
Confidence 4799999999999999999999999999999996544 88999999999999999999999999999999999999987
Q ss_pred cc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 448 IL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 448 ~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
++ +++|+.|+|++|.|++++.+..+++|+.|+|++|.|+++++ +..+++|+.|+|++|+|+..
T Consensus 124 l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 124 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 65 68899999999999999778999999999999999999875 89999999999999999864
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=4e-16 Score=153.68 Aligned_cols=173 Identities=17% Similarity=0.188 Sum_probs=124.8
Q ss_pred HhcccccccCccCcchhhchhhhhhh-hcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCc--cc-
Q psy13451 331 KRFDLLKTLDPLRLNYYKDSESKYKI-ETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNN--CL- 404 (522)
Q Consensus 331 ~~l~~L~~Ldl~~~~~~~~l~~~~~~-~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~--~~- 404 (522)
..+++|+.|+++++.........-.. ...++.+ +.|++++|.++.++. +..+++|+.|+|++|++.+. .+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 189 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGL----KVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA 189 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCC----CEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCC----CEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH
Confidence 67788888888887766532211000 0012222 588888888888764 77888888888888887642 22
Q ss_pred -ccCCCCCCccEEEcCCCCCCCCCC-----CCCCCCcCEEEccCCCCCcc-c--------cCcccEEEcCCCCCCCCCC-
Q psy13451 405 -RHLTPLVACESLKLTHCSLSSLHV-----FPHLPSLESLDVSHNAPNII-L--------CVYFQSLKLTHCSLSSLHV- 468 (522)
Q Consensus 405 -~~~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~ls~N~l~~~-~--------~~~L~~L~Ls~n~l~~~~~- 468 (522)
..+..+++|++|++++|.++.++. +..+++|++|++++|.++.. | +++|+.|++++|.|+.++.
T Consensus 190 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~ 269 (310)
T 4glp_A 190 ALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG 269 (310)
T ss_dssp TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC
T ss_pred HHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh
Confidence 233677888888888888877653 35678888889998888765 2 1578888999998887765
Q ss_pred CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511 (522)
Q Consensus 469 l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 511 (522)
+ .++|+.|+|++|.|++++. +..+++|+.|+|++|+++.
T Consensus 270 ~--~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 270 L--PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C--CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred h--cCCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence 3 2788899999998888753 6778888899999998864
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=5.7e-16 Score=162.27 Aligned_cols=172 Identities=16% Similarity=0.114 Sum_probs=130.6
Q ss_pred hcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccc------
Q psy13451 332 RFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLR------ 405 (522)
Q Consensus 332 ~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~------ 405 (522)
.+++|+.|+++++......+..+... +.+ +.|++++|.+++++++..+++|+.|+|++|.+++..+.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L----~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPF---TKL----ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTC---TTC----CEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCC---CCC----CEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEE
Confidence 34589999999987766444333221 222 57888888887765577777777777777766532211
Q ss_pred ----------cCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc-------cCcccEEEcCCCCCCCC
Q psy13451 406 ----------HLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL-------CVYFQSLKLTHCSLSSL 466 (522)
Q Consensus 406 ----------~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~-------~~~L~~L~Ls~n~l~~~ 466 (522)
....+++|+.|++++|.+++++ .++.+++|+.|++++|.+++++ +++|+.|+|++|.|+++
T Consensus 105 ~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp ECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred ECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 0123567888888888888863 5678899999999999998643 47889999999999998
Q ss_pred CCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451 467 HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511 (522)
Q Consensus 467 ~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 511 (522)
++...+++|+.|+|++|.|+++++. +..+++|+.|+|++|.++.
T Consensus 185 ~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 185 KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE
T ss_pred cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc
Confidence 8777799999999999999998864 8889999999999999985
No 79
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=1.9e-15 Score=165.03 Aligned_cols=180 Identities=18% Similarity=0.209 Sum_probs=128.9
Q ss_pred ccccccCccCcchhhchhhhhhhhc----------cccc-CC-----C-CC-cEEEecCCCcccccC--cCCCCcccEEE
Q psy13451 334 DLLKTLDPLRLNYYKDSESKYKIET----------FIQT-NP-----R-AN-QITNLSSLQLTSIHH--MHCFAHCKQVD 393 (522)
Q Consensus 334 ~~L~~Ldl~~~~~~~~l~~~~~~~~----------~l~~-l~-----~-~~-~~L~ls~n~l~~l~~--~~~l~~L~~L~ 393 (522)
+.|+.|++.++......+..+.... .+.. ++ . +. +.|++++|.++.++. +..+++|+.|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 5889999988876654433322111 0000 00 0 11 455555555554433 55556666666
Q ss_pred ecCCCCC--CcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc--------------cCcccE
Q psy13451 394 LSNNPLT--NNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL--------------CVYFQS 455 (522)
Q Consensus 394 Ls~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~--------------~~~L~~ 455 (522)
+++|.++ +..|..|..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++ +++|+.
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 6666554 356777888888999999999888875 3788889999999999887541 367899
Q ss_pred EEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 456 LKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 456 L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
|++++|.++.++. |..+++|+.|+|++|.++.+++..|..+++|+.|+|++|.++...
T Consensus 541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 9999999998875 888999999999999999998888889999999999999887544
No 80
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.63 E-value=1.4e-15 Score=151.30 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=78.1
Q ss_pred cEEEecCCCccc--c-cC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEcc
Q psy13451 368 QITNLSSLQLTS--I-HH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVS 441 (522)
Q Consensus 368 ~~L~ls~n~l~~--l-~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls 441 (522)
+.|++++|.++. + +. +..+ +|+.|++++|.++ .+|..+. ++|+.|++++|.++.++ .+..+++|+.|+++
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred CEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 456666666543 2 22 4444 6666666666665 3444332 45666666666666553 35556666666666
Q ss_pred CCCCCccc------cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhhcCC------CCccEEEecCCC
Q psy13451 442 HNAPNIIL------CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVFAKY------EACVQVILTGNP 508 (522)
Q Consensus 442 ~N~l~~~~------~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l------~~L~~L~L~~N~ 508 (522)
+|.++.++ +++|+.|++++|.++.++. +..+++|+.|++++|.|+.++...|..+ +.|+.|++++|+
T Consensus 226 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 226 HNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 66665443 2455666666666665554 5556666666666666666554444432 445666666666
Q ss_pred Cc
Q psy13451 509 VS 510 (522)
Q Consensus 509 l~ 510 (522)
+.
T Consensus 306 ~~ 307 (332)
T 2ft3_A 306 VP 307 (332)
T ss_dssp SC
T ss_pred cc
Confidence 55
No 81
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.63 E-value=1.2e-15 Score=158.45 Aligned_cols=93 Identities=11% Similarity=0.123 Sum_probs=63.5
Q ss_pred hHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCccc--ccC--cCCCCcccEEEecCCCCCCc
Q psy13451 327 EIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTS--IHH--MHCFAHCKQVDLSNNPLTNN 402 (522)
Q Consensus 327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~--l~~--~~~l~~L~~L~Ls~n~l~~~ 402 (522)
+..+..+++|++||++++......+..+.. +..+ ++|++++|.+++ ++. +..+++|+.|++++|.+++.
T Consensus 72 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L----~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 144 (455)
T 3v47_A 72 NNTFRGLSSLIILKLDYNQFLQLETGAFNG---LANL----EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144 (455)
T ss_dssp TTTTTTCTTCCEEECTTCTTCEECTTTTTT---CTTC----CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC
T ss_pred cccccccccCCEEeCCCCccCccChhhccC---cccC----CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc
Confidence 445667777777777776654433322221 1111 588888888876 333 77788888888888888866
Q ss_pred cccc-CCCCCCccEEEcCCCCCCCC
Q psy13451 403 CLRH-LTPLVACESLKLTHCSLSSL 426 (522)
Q Consensus 403 ~~~~-~~~l~~L~~L~l~~n~l~~~ 426 (522)
.|.. +..+++|+.|++++|.++.+
T Consensus 145 ~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 145 QPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp CCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred CcccccCCCCcccEEeCCCCccccc
Confidence 6665 77888888888888887764
No 82
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=3e-15 Score=150.70 Aligned_cols=145 Identities=23% Similarity=0.244 Sum_probs=127.4
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCC-CCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCC
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLT-PLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA 444 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~ 444 (522)
+.+++++++|+.+|. .-...++.|+|++|.+++..+..|. .+++|+.|+|++|.|+.++ .|..+++|+.|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 589999999999997 2245789999999999977777787 8999999999999999986 58999999999999999
Q ss_pred CCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhh---cCCCCccEEEecCCCCcccc
Q psy13451 445 PNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVF---AKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 445 l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l---~~l~~L~~L~L~~N~l~~~~ 513 (522)
++.++ +++|+.|+|++|.|+.+++ |..+++|+.|+|++|.|+.++...| ..+++|+.|+|++|.|+...
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 98765 4789999999999999865 8999999999999999999997777 66899999999999998543
No 83
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.62 E-value=5.4e-16 Score=167.96 Aligned_cols=180 Identities=14% Similarity=0.177 Sum_probs=108.3
Q ss_pred hhHHHHhcccccccCccCcc-hhh-chhhhhhhhc---ccccCCCCCcEEEecCCCcccccC---cCCCCcccEEEecCC
Q psy13451 326 NEIILKRFDLLKTLDPLRLN-YYK-DSESKYKIET---FIQTNPRANQITNLSSLQLTSIHH---MHCFAHCKQVDLSNN 397 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~-~~~-~l~~~~~~~~---~l~~l~~~~~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n 397 (522)
.|..+..+++|+.|+++++. +.+ .++..+.... .++.+ +.|++++|.++.+|. +..+++|+.|++++|
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L----~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI----QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTC----CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCC----CEEECCCCcCCccCchhhhccCCCCCEEeCcCC
Confidence 55667788888888888887 555 4555443321 11222 467777777766665 666667777777777
Q ss_pred CCCCcccccCCCCCCccEEEcCCCCCCCCC-CCCCCCC-cCEEEccCCCCCcccc-------CcccEEEcCCCCCCCCCC
Q psy13451 398 PLTNNCLRHLTPLVACESLKLTHCSLSSLH-VFPHLPS-LESLDVSHNAPNIILC-------VYFQSLKLTHCSLSSLHV 468 (522)
Q Consensus 398 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~-L~~L~ls~N~l~~~~~-------~~L~~L~Ls~n~l~~~~~ 468 (522)
.++|.+| .|..+++|+.|++++|.++.+| .+..+++ |+.|++++|.++.+|. ++|+.|++++|.+++..+
T Consensus 341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 341 QLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp CCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred cCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcch
Confidence 7666666 5666666666666666666554 3555665 6666666666655441 245666666666655432
Q ss_pred --CC-------CCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCc
Q psy13451 469 --FP-------HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510 (522)
Q Consensus 469 --l~-------~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 510 (522)
+. .+++|+.|+|++|.++.++...+..+++|+.|+|++|.++
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 33 4455666666666666555555555556666666666554
No 84
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.62 E-value=5.7e-16 Score=155.49 Aligned_cols=173 Identities=18% Similarity=0.173 Sum_probs=139.8
Q ss_pred ccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCC
Q psy13451 334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLV 411 (522)
Q Consensus 334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 411 (522)
++|+.|+++++.........+.. ++.+ +.|++++|.++.++. +..+++|+.|++++|.+++..+..|..++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~---l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQR---CVNL----QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT---CTTC----CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred ccCcEEECCCCcCcccCHHHhcc---CCCC----CEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence 58899998887755422212211 1222 699999999999754 88999999999999999965555588999
Q ss_pred CccEEEcCCCCCCCCCC---CCCCCCcCEEEccCC-CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEE
Q psy13451 412 ACESLKLTHCSLSSLHV---FPHLPSLESLDVSHN-APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLD 479 (522)
Q Consensus 412 ~L~~L~l~~n~l~~~~~---~~~l~~L~~L~ls~N-~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~ 479 (522)
+|++|++++|.++.++. +..+++|+.|++++| .++.++ +++|+.|++++|.+++..+ +..+++|+.|+
T Consensus 125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence 99999999999998864 788999999999998 466553 4688999999999998754 88899999999
Q ss_pred ccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 480 VSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 480 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
+++|.++.++...+..+++|+.|++++|.++...
T Consensus 205 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp EECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred CCCCccccchhhhhhhcccccEEECCCCcccccc
Confidence 9999998887767777899999999999988643
No 85
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.62 E-value=3.8e-15 Score=155.32 Aligned_cols=140 Identities=19% Similarity=0.253 Sum_probs=83.7
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI 447 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~ 447 (522)
+.|++++|.+++++.+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++++.+..+++|+.|++++|.+++
T Consensus 246 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 246 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp SEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC
T ss_pred CEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCC
Confidence 3555555555555445555555555555555553222 55555666666666666555555556666666666666554
Q ss_pred cc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451 448 IL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511 (522)
Q Consensus 448 ~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 511 (522)
++ +++|+.|++++|.+++++.+..+++|+.|++++|.+++.++ +..+++|+.|++++|++++
T Consensus 324 ~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 324 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred chhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 43 35666666666666666556666667777777776666554 6666777777777776654
No 86
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=4.6e-15 Score=135.36 Aligned_cols=131 Identities=18% Similarity=0.246 Sum_probs=104.8
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccc-cCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCC
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLR-HLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA 444 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~ 444 (522)
+.+++++|+++.+|. .-..+++.|++++|.+++..+. .|..+++|+.|++++|.|+.++ .|..+++|+.|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 578999999999887 1234899999999999855553 4888999999999999999873 57888888888888888
Q ss_pred CCccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451 445 PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 445 l~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 515 (522)
++.++.. .+..+++|+.|+|++|.|+++++..+..+++|+.|+|++|++.|+|..
T Consensus 90 l~~~~~~----------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 90 IKEISNK----------------MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCEECSS----------------SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCccCHH----------------HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 7655432 156678888888888888888777888888888888888888888754
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=1.2e-15 Score=144.25 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=138.7
Q ss_pred hHHHHhcccccccCccCcchhhchhh-hhhhhcccccCCCCCcEEEecC-CCcccccC--cCCCCcccEEEecCCCCCCc
Q psy13451 327 EIILKRFDLLKTLDPLRLNYYKDSES-KYKIETFIQTNPRANQITNLSS-LQLTSIHH--MHCFAHCKQVDLSNNPLTNN 402 (522)
Q Consensus 327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~-~~~~~~~l~~l~~~~~~L~ls~-n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~ 402 (522)
+..+..+++|+.|++.++.....++. .+. .++.+ +.|++++ |.++.++. +..+++|+.|++++|.+++
T Consensus 48 ~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~---~l~~L----~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~- 119 (239)
T 2xwt_C 48 SHAFSNLPNISRIYVSIDVTLQQLESHSFY---NLSKV----THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM- 119 (239)
T ss_dssp TTTTTTCTTCCEEEEECCSSCCEECTTTEE---SCTTC----CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-
T ss_pred HHHccCCCCCcEEeCCCCCCcceeCHhHcC---CCcCC----cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-
Confidence 34567899999999998863333332 111 12222 6999998 99999875 8899999999999999995
Q ss_pred ccccCCCCCCcc---EEEcCCC-CCCCCC--CCCCCCCcC-EEEccCCCCCccc-----cCcccEEEcCCCC-CCCCCC-
Q psy13451 403 CLRHLTPLVACE---SLKLTHC-SLSSLH--VFPHLPSLE-SLDVSHNAPNIIL-----CVYFQSLKLTHCS-LSSLHV- 468 (522)
Q Consensus 403 ~~~~~~~l~~L~---~L~l~~n-~l~~~~--~~~~l~~L~-~L~ls~N~l~~~~-----~~~L~~L~Ls~n~-l~~~~~- 468 (522)
+|. |..+++|+ .|++++| .++.++ .|..+++|+ .|++++|.++.++ ..+|+.|++++|. ++.+++
T Consensus 120 lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 120 FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTT
T ss_pred ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHH
Confidence 676 88888888 9999999 999886 388999999 9999999998766 3578999999995 998875
Q ss_pred -CCCC-CCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCC
Q psy13451 469 -FPHL-PSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508 (522)
Q Consensus 469 -l~~~-~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~ 508 (522)
+..+ ++|+.|++++|.++.++.. .+++|+.|.++++.
T Consensus 199 ~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 199 AFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred HhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 7888 9999999999999998864 57788899988763
No 88
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.61 E-value=3e-15 Score=156.06 Aligned_cols=173 Identities=20% Similarity=0.216 Sum_probs=149.5
Q ss_pred HHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCC
Q psy13451 329 ILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLT 408 (522)
Q Consensus 329 ~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 408 (522)
.+..+++|+.|++.++......+ + ..++.+ +.|++++|.++.++.+..+++|+.|++++|.+++..+ +.
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~--~---~~l~~L----~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP--L---GILTNL----DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--G---GGCTTC----CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred hhccCCCCCEEEecCCccccccc--c---cccCCC----CEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hh
Confidence 36889999999999887654332 1 112222 6999999999999888999999999999999996544 88
Q ss_pred CCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCC
Q psy13451 409 PLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484 (522)
Q Consensus 409 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~ 484 (522)
.+++|+.|++++|.++.++.+..+++|+.|++++|.++.++ +++|+.|++++|.+++.+++..+++|+.|++++|.
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 342 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC
T ss_pred cCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCc
Confidence 99999999999999999888899999999999999998765 58899999999999998888899999999999999
Q ss_pred CCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 485 IDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 485 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
++++ ..+..+++|+.|++++|+++....
T Consensus 343 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 343 VSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred cCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 9987 478899999999999999976543
No 89
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.61 E-value=1.3e-14 Score=150.64 Aligned_cols=166 Identities=16% Similarity=0.143 Sum_probs=92.4
Q ss_pred HHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCC
Q psy13451 329 ILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLT 408 (522)
Q Consensus 329 ~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 408 (522)
.++.+++|+.||++++...+ ++ .+. .++.+ +.|++++|.++++| +..+++|+.|++++|.+++. + ++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-~~-~l~---~l~~L----~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-MT-GIE---KLTGL----TKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-CT-TGG---GCTTC----SEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred ChhHcCCCCEEEccCCCccc-Ch-hhc---ccCCC----CEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee-e--cC
Confidence 45667777777776665443 11 111 11111 35555555555554 45555555555555555532 2 45
Q ss_pred CCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc-------------------------cCcccEEEcCCCCC
Q psy13451 409 PLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL-------------------------CVYFQSLKLTHCSL 463 (522)
Q Consensus 409 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~-------------------------~~~L~~L~Ls~n~l 463 (522)
.+++|++|++++|.++.++ ++.+++|+.|++++|.++.++ +++|+.|++++|.+
T Consensus 104 ~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCC
T ss_pred CCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcc
Confidence 5555555555555555543 455555555555555554432 34556666666666
Q ss_pred CCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 464 SSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 464 ~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
++++ +..+++|+.|++++|.+++++ ++.+++|+.|++++|.++..
T Consensus 183 ~~l~-l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~i 227 (457)
T 3bz5_A 183 TELD-VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEI 227 (457)
T ss_dssp CCCC-CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC
T ss_pred ceec-cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCccccc
Confidence 6654 556666666666666666652 56667777777777776653
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=1.3e-15 Score=139.53 Aligned_cols=149 Identities=15% Similarity=0.247 Sum_probs=124.7
Q ss_pred HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCC
Q psy13451 330 LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTP 409 (522)
Q Consensus 330 l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 409 (522)
...+++|+.|++.++... +++. + ..++.+ +.|++++|.++.++.+..+++|+.|++++|.+++..+..++.
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~~-l---~~l~~L----~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLTG-I---EYAHNI----KDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCTT-G---GGCTTC----SEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhhcCCccEEeccCCCcc-ChHH-H---hcCCCC----CEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcC
Confidence 378899999999887655 3331 1 122222 599999999998888999999999999999999878889999
Q ss_pred CCCccEEEcCCCCCCC--CCCCCCCCCcCEEEccCCC-CCccc----cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccC
Q psy13451 410 LVACESLKLTHCSLSS--LHVFPHLPSLESLDVSHNA-PNIIL----CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482 (522)
Q Consensus 410 l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~ls~N~-l~~~~----~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~ 482 (522)
+++|+.|++++|.++. ++.+..+++|+.|++++|. ++.++ +++|+.|++++|.+++++.+..+++|+.|++++
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECB
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeC
Confidence 9999999999999997 3468899999999999998 87765 578999999999999988888999999999999
Q ss_pred CCCCC
Q psy13451 483 NAIDH 487 (522)
Q Consensus 483 N~l~~ 487 (522)
|+|++
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 99875
No 91
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=3.6e-15 Score=165.31 Aligned_cols=181 Identities=17% Similarity=0.136 Sum_probs=114.8
Q ss_pred hhHHHHhcccccccCccCcc-hhh-chhhhhhhhc-ccccCCCCC-cEEEecCCCcccccC---cCCCCcccEEEecCCC
Q psy13451 326 NEIILKRFDLLKTLDPLRLN-YYK-DSESKYKIET-FIQTNPRAN-QITNLSSLQLTSIHH---MHCFAHCKQVDLSNNP 398 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~-~~~-~l~~~~~~~~-~l~~l~~~~-~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n~ 398 (522)
.|..+..+++|+.|+++++. +.+ .++..+.... .+.. .+. +.|++++|.++.+|. +..+++|+.|+|++|.
T Consensus 507 iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~--l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT--GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTT--TTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccc--cCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC
Confidence 56777888889999888887 554 4555443321 1111 012 577777777777765 6777777777777777
Q ss_pred CCCcccccCCCCCCccEEEcCCCCCCCCC-CCCCCCC-cCEEEccCCCCCcccc-------CcccEEEcCCCCCCCCCC-
Q psy13451 399 LTNNCLRHLTPLVACESLKLTHCSLSSLH-VFPHLPS-LESLDVSHNAPNIILC-------VYFQSLKLTHCSLSSLHV- 468 (522)
Q Consensus 399 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~-L~~L~ls~N~l~~~~~-------~~L~~L~Ls~n~l~~~~~- 468 (522)
++ .+| .|+.+++|+.|++++|.++.+| .+..+++ |+.|++++|.++.+|. ++|+.|++++|.+++..+
T Consensus 585 l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 585 VR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp CC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred cc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 77 666 6777777777777777777665 4666666 7777777777765541 236667777776655322
Q ss_pred CC------CCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCc
Q psy13451 469 FP------HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510 (522)
Q Consensus 469 l~------~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 510 (522)
+. .+++|+.|+|++|.++.++...+..+++|+.|+|++|.++
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence 11 2335666666666666655555555666666666666555
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=1.2e-15 Score=146.57 Aligned_cols=140 Identities=20% Similarity=0.263 Sum_probs=127.5
Q ss_pred EEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCcc
Q psy13451 369 ITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII 448 (522)
Q Consensus 369 ~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~ 448 (522)
.++++++.++.++.+..+++|+.|++++|.++ .++ .+..+++|+.|++++|.++.++.+..+++|+.|++++|.++.+
T Consensus 23 ~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l 100 (263)
T 1xeu_A 23 KQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL 100 (263)
T ss_dssp HHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCC
T ss_pred HHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCc
Confidence 46778889998888888999999999999998 555 6889999999999999999998899999999999999999876
Q ss_pred c---cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 449 L---CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 449 ~---~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
+ .++|+.|++++|.+++++.+..+++|+.|+|++|.|++++ .++.+++|+.|++++|+++..
T Consensus 101 ~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 101 NGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp TTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred CccccCcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch
Confidence 5 3789999999999999888999999999999999999985 688999999999999999876
No 93
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.61 E-value=2.4e-15 Score=162.03 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=127.5
Q ss_pred cEEEecCCCcccccC-cCCCCcccEEEecCCCCCCccc-ccCCCCCCccEEEcCCCCCCCC-C-CCCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCL-RHLTPLVACESLKLTHCSLSSL-H-VFPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~ls~N 443 (522)
+.|++++|.++.+|. +..+++|+.|++++|.+++..| ..+..+++|+.|++++|.++.. + .+..+++|+.|++++|
T Consensus 379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 689999999988876 8889999999999999987766 6788999999999999998874 3 5888999999999999
Q ss_pred CCCc--cc-----cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451 444 APNI--IL-----CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511 (522)
Q Consensus 444 ~l~~--~~-----~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 511 (522)
.++. ++ +++|+.|++++|.++++++ +..+++|+.|+|++|.++++++..++.+++|+.|++++|+++.
T Consensus 459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence 9875 23 4789999999999998865 8899999999999999999988899999999999999999874
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=5.4e-15 Score=136.63 Aligned_cols=140 Identities=21% Similarity=0.186 Sum_probs=120.0
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N 443 (522)
+.|++++|.++.++. +..+++|+.|++++|.+++..+..|..+++|++|++++|.++.++. +..+++|+.|++++|
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence 799999999999876 7889999999999999996666678899999999999999999863 788999999999999
Q ss_pred CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 444 APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 444 ~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
.++.++ .++|+.|++++|.++++++ +..+++|+.|++++|.+.. .+++|+.|+++.|.+++...
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBB
T ss_pred cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceee
Confidence 998765 4688999999999998876 7889999999999997664 45677788888877775543
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=149.06 Aligned_cols=173 Identities=16% Similarity=0.111 Sum_probs=136.6
Q ss_pred hcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccc-c---C--cCCCCcccEEEecCCCCCCcccc
Q psy13451 332 RFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSI-H---H--MHCFAHCKQVDLSNNPLTNNCLR 405 (522)
Q Consensus 332 ~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l-~---~--~~~l~~L~~L~Ls~n~l~~~~~~ 405 (522)
.+++|+.|++.++...+..+..+.. ..+..+ ++|++++|.++.. + . +..+++|+.|++++|.+++..+.
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L----~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 163 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLE-ATGLAL----SSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE 163 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSS-CCCBCC----SSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT
T ss_pred ccCceeEEEeeCCEeccchhhhhhh-ccCCCC----CEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH
Confidence 3467999999988776655443210 111222 6899999999872 2 1 45789999999999999988888
Q ss_pred cCCCCCCccEEEcCCCCCCC---CC---CCCCCCCcCEEEccCCCCCccc---------cCcccEEEcCCCCCCCCCC--
Q psy13451 406 HLTPLVACESLKLTHCSLSS---LH---VFPHLPSLESLDVSHNAPNIIL---------CVYFQSLKLTHCSLSSLHV-- 468 (522)
Q Consensus 406 ~~~~l~~L~~L~l~~n~l~~---~~---~~~~l~~L~~L~ls~N~l~~~~---------~~~L~~L~Ls~n~l~~~~~-- 468 (522)
.|..+++|++|++++|.+.+ ++ .+..+++|++|++++|.++.++ .++|+.|+|++|.|++..+
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 99999999999999999765 22 2468899999999999998543 3889999999999999732
Q ss_pred CCCC---CCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 469 FPHL---PSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 469 l~~~---~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
+..+ ++|+.|+|++|.|+.++... .++|+.|+|++|+++..
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRA 287 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSC
T ss_pred HHhccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCC
Confidence 4444 79999999999999887533 27999999999999873
No 96
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=2.9e-15 Score=166.06 Aligned_cols=142 Identities=19% Similarity=0.205 Sum_probs=99.7
Q ss_pred cEEEecCCCccc------------------ccC-cC--CCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCC-CCC
Q psy13451 368 QITNLSSLQLTS------------------IHH-MH--CFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCS-LSS 425 (522)
Q Consensus 368 ~~L~ls~n~l~~------------------l~~-~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~ 425 (522)
+.|++++|.|++ +|. +. .+++|+.|+|++|.+.+.+|..|+.+++|+.|++++|. +++
T Consensus 451 ~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg 530 (876)
T 4ecn_A 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530 (876)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc
Confidence 688888888887 777 55 78888888888888888888888888888888888886 664
Q ss_pred --CC--------CCCCCCCcCEEEccCCCCCcccc-------CcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCC
Q psy13451 426 --LH--------VFPHLPSLESLDVSHNAPNIILC-------VYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHI 488 (522)
Q Consensus 426 --~~--------~~~~l~~L~~L~ls~N~l~~~~~-------~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~ 488 (522)
+| .+..+++|+.|++++|.++.+|. ++|+.|+|++|.++.++.++.+++|+.|+|++|.++.+
T Consensus 531 ~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~l 610 (876)
T 4ecn_A 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEI 610 (876)
T ss_dssp HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCC
T ss_pred ccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccc
Confidence 33 23445577777777777665542 45677777777766665566666667777777666654
Q ss_pred ChhhhcCCCC-ccEEEecCCCCc
Q psy13451 489 EDSVFAKYEA-CVQVILTGNPVS 510 (522)
Q Consensus 489 ~~~~l~~l~~-L~~L~L~~N~l~ 510 (522)
+ ..+..+++ |+.|+|++|.++
T Consensus 611 p-~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 611 P-EDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp C-TTSCEECTTCCEEECCSSCCC
T ss_pred h-HHHhhccccCCEEECcCCCCC
Confidence 4 34555666 666666666655
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=9.6e-15 Score=154.76 Aligned_cols=135 Identities=22% Similarity=0.270 Sum_probs=101.4
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI 447 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~ 447 (522)
+.|++++|.|+++|.+.. +|+.|+|++|.+++ +|. .+++|+.|++++|.|+.+|. .+++|+.|++++|.++.
T Consensus 103 ~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 103 EYLDACDNRLSTLPELPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CEEECCSSCCSCCCCCCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC
T ss_pred CEEEccCCCCCCcchhhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCC
Confidence 577777777777776332 77778888887774 554 56778888888888887775 56788888888888877
Q ss_pred cc--cCcccEEEcCCCCCCCCCCCCCCCCC-------CEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 448 IL--CVYFQSLKLTHCSLSSLHVFPHLPSL-------ESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 448 ~~--~~~L~~L~Ls~n~l~~~~~l~~~~~L-------~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
++ .++|+.|+|++|.|+.++.+.. +| +.|+|++|.|+.+|. .+..+++|+.|+|++|++++..
T Consensus 175 lp~l~~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 175 LPELPESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CCCCCTTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCCCCCG-GGGGSCTTEEEECCSSSCCHHH
T ss_pred cchhhCCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcceecCH-HHhcCCCCCEEEeeCCcCCCcC
Confidence 65 2678888888888888776332 67 899999999998875 4555999999999999998654
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.60 E-value=6.9e-15 Score=158.88 Aligned_cols=145 Identities=23% Similarity=0.246 Sum_probs=113.4
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N 443 (522)
++|+|++|.|+.+|. |..+++|++|+|++|.|++..+++|.++++|++|+|++|+|+.++ .|..+++|++|++++|
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence 788888888888865 888888888888888888666677888888888888888888876 3788888888888888
Q ss_pred CCCccc------cCcccEEEcCCCCCCCCC--C-CCCCCCCCEEEccCCCCCCCChhhhcCCCCc----cEEEecCCCCc
Q psy13451 444 APNIIL------CVYFQSLKLTHCSLSSLH--V-FPHLPSLESLDVSHNAIDHIEDSVFAKYEAC----VQVILTGNPVS 510 (522)
Q Consensus 444 ~l~~~~------~~~L~~L~Ls~n~l~~~~--~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L----~~L~L~~N~l~ 510 (522)
.++.++ +++|+.|++++|.++.+. . +..+++|+.|+|++|.|+++++..+..+.++ ..++++.|+++
T Consensus 135 ~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence 887765 367888888888887653 2 6677888888888888888776666554433 36778888776
Q ss_pred cc
Q psy13451 511 AD 512 (522)
Q Consensus 511 ~~ 512 (522)
..
T Consensus 215 ~i 216 (635)
T 4g8a_A 215 FI 216 (635)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 99
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.59 E-value=5.5e-15 Score=159.21 Aligned_cols=144 Identities=24% Similarity=0.269 Sum_probs=98.8
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCccccc-CCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccC
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRH-LTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSH 442 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~ 442 (522)
+.|++++|.+++++. +..+++|+.|++++|.+++..+.. +..+++|+.|++++|.++..+ .+..+++|+.|++++
T Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence 566777776666433 666677777777777766554433 666777777777777776643 366677777777777
Q ss_pred CCCCcc--c-------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451 443 NAPNII--L-------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511 (522)
Q Consensus 443 N~l~~~--~-------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 511 (522)
|.++.. + +++|+.|++++|.++++++ +..+++|+.|+|++|.+++.++..+..++.| .|++++|.++.
T Consensus 459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 776541 1 3667777777777777654 6777777777887777777777777777777 77777777764
Q ss_pred c
Q psy13451 512 D 512 (522)
Q Consensus 512 ~ 512 (522)
.
T Consensus 538 ~ 538 (606)
T 3t6q_A 538 I 538 (606)
T ss_dssp C
T ss_pred c
Confidence 3
No 100
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=7.1e-15 Score=132.33 Aligned_cols=172 Identities=10% Similarity=0.027 Sum_probs=158.7
Q ss_pred CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451 56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL 135 (522)
Q Consensus 56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~ 135 (522)
++..++|+..+.+....|. +++++..++++++.+|++..+|..++.++... +++++++..+.+++..
T Consensus 2 ge~~~iy~~lG~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~a~~~~~~~~~~ 68 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGD----------FDGAIRAYKKVLKADPNNVETLLKLGKTYMDI---GLPNDAIESLKKFVVL 68 (184)
T ss_dssp --CHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhc
Confidence 4678999999999999998 89999999999999999999999999999999 9999999999999999
Q ss_pred cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHh
Q psy13451 136 DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVF 215 (522)
Q Consensus 136 d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~ 215 (522)
+|.+..+|...+.+....+. ++.+.+.+.+++..+|.+..+|..++.+...+ +.++++++++++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 69 DTTSAEAYYILGSANFMIDE-KQAAIDALQRAIALNTVYADAYYKLGLVYDSM------------GEHDKAIEAYEKTIS 135 (184)
T ss_dssp CCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccchHHHHHHHHHHHHh------------CCchhHHHHHHHHHH
Confidence 99999999999999999887 68999999999999999999999999999988 889999999999999
Q ss_pred cCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEEeccccccccc
Q psy13451 216 TEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTST 264 (522)
Q Consensus 216 ~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (522)
.+|.+..+|+.++.++...++... |+..|.++++++|+
T Consensus 136 ~~p~~~~~~~~lg~~~~~~g~~~~-----------A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 136 IKPGFIRAYQSIGLAYEGKGLRDE-----------AVKYFKKALEKEEK 173 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHHTTHH
T ss_pred hcchhhhHHHHHHHHHHHCCCHHH-----------HHHHHHHHHhCCcc
Confidence 999999999999999999888766 55567777777663
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=2.2e-14 Score=152.03 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=131.8
Q ss_pred hHHHHhcc-----cccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCC
Q psy13451 327 EIILKRFD-----LLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN 401 (522)
Q Consensus 327 ~~~l~~l~-----~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~ 401 (522)
+..+..++ +|+.|++.++.+.. ++..+ ++.+ +.|++++|.|+.+| ..+++|+.|++++|.+++
T Consensus 47 ~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l-----~~~L----~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ 114 (571)
T 3cvr_A 47 NEAVSLLKECLINQFSELQLNRLNLSS-LPDNL-----PPQI----TVLEITQNALISLP--ELPASLEYLDACDNRLST 114 (571)
T ss_dssp HHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCC-----CTTC----SEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC
T ss_pred cchhhhccccccCCccEEEeCCCCCCc-cCHhH-----cCCC----CEEECcCCCCcccc--cccCCCCEEEccCCCCCC
Confidence 33455554 89999999876543 33211 1112 69999999999999 668999999999999995
Q ss_pred cccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc--cCcccEEEcCCCCCCCCCCCCCCCCCCEEE
Q psy13451 402 NCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL--CVYFQSLKLTHCSLSSLHVFPHLPSLESLD 479 (522)
Q Consensus 402 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~--~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~ 479 (522)
+|. +.. +|+.|++++|.|+.+|. .+++|+.|++++|.++.++ +++|+.|+|++|.|++++.+. ++|+.|+
T Consensus 115 -ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~ 186 (571)
T 3cvr_A 115 -LPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELP--ESLEALD 186 (571)
T ss_dssp -CCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEE
T ss_pred -cch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcchhh--CCCCEEE
Confidence 777 665 99999999999999987 7899999999999999887 578999999999999988754 8999999
Q ss_pred ccCCCCCCCChhhhcCCCCc-------cEEEecCCCCcc
Q psy13451 480 VSHNAIDHIEDSVFAKYEAC-------VQVILTGNPVSA 511 (522)
Q Consensus 480 Ls~N~l~~~~~~~l~~l~~L-------~~L~L~~N~l~~ 511 (522)
|++|.|+.++. +.. +| +.|+|++|.|+.
T Consensus 187 Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~ 221 (571)
T 3cvr_A 187 VSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRITH 221 (571)
T ss_dssp CCSSCCSSCCC--CC----------CCEEEECCSSCCCC
T ss_pred CcCCCCCchhh--HHH--hhhcccccceEEecCCCccee
Confidence 99999998875 443 67 999999999984
No 102
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.58 E-value=8.3e-15 Score=158.26 Aligned_cols=148 Identities=21% Similarity=0.235 Sum_probs=129.8
Q ss_pred cEEEecCCCcccccC---cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCC--CC-CCCCCCCcCEEEcc
Q psy13451 368 QITNLSSLQLTSIHH---MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS--LH-VFPHLPSLESLDVS 441 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~-~~~~l~~L~~L~ls 441 (522)
+.++++++....... +..+++++.++++.|.+++..+..+..++.++.|++++|.+.. .| .+..+++|+.|+++
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 678888776665432 7788999999999999998888889999999999999997543 33 58899999999999
Q ss_pred CCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCC-CCccEEEecCCCCccc
Q psy13451 442 HNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKY-EACVQVILTGNPVSAD 512 (522)
Q Consensus 442 ~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l-~~L~~L~L~~N~l~~~ 512 (522)
+|+++.++ +++|+.|+|++|+|+++++ +..+++|+.|+|++|+|+.+++..+..+ ++|+.|+|++||+.|+
T Consensus 503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999775 4789999999999999986 8899999999999999999998889888 6899999999999999
Q ss_pred ccc
Q psy13451 513 MVV 515 (522)
Q Consensus 513 ~~~ 515 (522)
|..
T Consensus 583 C~~ 585 (635)
T 4g8a_A 583 CEH 585 (635)
T ss_dssp GGG
T ss_pred CCc
Confidence 964
No 103
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=2.5e-14 Score=128.56 Aligned_cols=130 Identities=22% Similarity=0.265 Sum_probs=101.9
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCCCC
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHNAP 445 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N~l 445 (522)
+.+++++++++.+|. ...++|+.|++++|.+++..+..|..+++|++|++++|.++.++. +..+++|+.|++++|.+
T Consensus 10 ~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 578899999998886 334789999999999986666677888999999999999988763 67788888888877777
Q ss_pred CccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 446 NIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 446 ~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
+.++.. .+..+++|+.|++++|.++.+++..+..+++|+.|++++|++.|++.
T Consensus 89 ~~~~~~----------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 89 QSLPNG----------------VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCTT----------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccCHH----------------HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 544321 15667788888888888888877777788888888888888888764
No 104
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.58 E-value=1.1e-15 Score=165.39 Aligned_cols=180 Identities=12% Similarity=0.171 Sum_probs=113.6
Q ss_pred hhHHHHhcccccccCccCcchhhc-----------------hhhhhhhhcccccCCCCCcEEEecCCCccc-ccC-cCCC
Q psy13451 326 NEIILKRFDLLKTLDPLRLNYYKD-----------------SESKYKIETFIQTNPRANQITNLSSLQLTS-IHH-MHCF 386 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~~~~~-----------------l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~-l~~-~~~l 386 (522)
.|..++.+++|+.|+++++.+.+. ++..+.+ ..+..+ ++|++++|.+.+ +|. +..+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~-~~l~~L----~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW-DNLKDL----TDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG-GGCTTC----CEEEEECCTTCSSCCTTTTTC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh-cccCCC----CEEEecCCcCCccChHHHhcC
Confidence 566789999999999999887763 3332220 011111 588888887665 565 7778
Q ss_pred CcccEEEecCCC-CCC-cccccCCCC------CCccEEEcCCCCCCCCCC---CCCCCCcCEEEccCCCCC-ccc----c
Q psy13451 387 AHCKQVDLSNNP-LTN-NCLRHLTPL------VACESLKLTHCSLSSLHV---FPHLPSLESLDVSHNAPN-IIL----C 450 (522)
Q Consensus 387 ~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~ls~N~l~-~~~----~ 450 (522)
++|+.|++++|. +++ .+|..++.+ ++|+.|++++|.++.+|. ++.+++|+.|++++|.++ .++ +
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l 352 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCC
Confidence 888888888887 776 677666554 777788888777777765 677777777777777776 333 2
Q ss_pred CcccEEEcCCCCCCCCCC-CCCCCC-CCEEEccCCCCCCCChhhhcCCC--CccEEEecCCCCcc
Q psy13451 451 VYFQSLKLTHCSLSSLHV-FPHLPS-LESLDVSHNAIDHIEDSVFAKYE--ACVQVILTGNPVSA 511 (522)
Q Consensus 451 ~~L~~L~Ls~n~l~~~~~-l~~~~~-L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~L~~N~l~~ 511 (522)
++|+.|++++|.++.++. +..+++ |+.|++++|.++.++ ..+..++ +|+.|++++|.++.
T Consensus 353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP-NIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp EEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCC-SCCCTTCSSCEEEEECCSSCTTT
T ss_pred CCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccc-hhhhhcccCccCEEECcCCcCCC
Confidence 445555666665555443 445555 555555555555444 2333322 45555555555443
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=7.7e-15 Score=130.73 Aligned_cols=126 Identities=22% Similarity=0.223 Sum_probs=87.4
Q ss_pred CCcccEEEecCCCCC-CcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc-cc-----cCcccEEEc
Q psy13451 386 FAHCKQVDLSNNPLT-NNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI-IL-----CVYFQSLKL 458 (522)
Q Consensus 386 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~-~~-----~~~L~~L~L 458 (522)
+++|+.|++++|.++ +.+|..+..+++|+.|++++|.++.++.+..+++|+.|++++|.++. ++ +++|+.|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 345666666666655 44555555566666666666666655555666666666666666655 22 456666777
Q ss_pred CCCCCCCCC---CCCCCCCCCEEEccCCCCCCCCh---hhhcCCCCccEEEecCCCCcc
Q psy13451 459 THCSLSSLH---VFPHLPSLESLDVSHNAIDHIED---SVFAKYEACVQVILTGNPVSA 511 (522)
Q Consensus 459 s~n~l~~~~---~l~~~~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~~L~L~~N~l~~ 511 (522)
++|.+++++ .+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.+..
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 777766654 27788999999999999999886 588999999999999998753
No 106
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.57 E-value=4.4e-14 Score=146.61 Aligned_cols=164 Identities=16% Similarity=0.094 Sum_probs=94.2
Q ss_pred HHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCC
Q psy13451 330 LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTP 409 (522)
Q Consensus 330 l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 409 (522)
++.+++|+.|+++++..... + + ..++.+ +.|++++|.++++| +..+++|+.|++++|.+++ ++ ++.
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-~--~---~~l~~L----~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~-l~--l~~ 146 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-D--V---TPLTKL----TYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTE-ID--VSH 146 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-C--C---TTCTTC----CEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSC-CC--CTT
T ss_pred cccCCCCCEEECcCCCCcee-e--c---CCCCcC----CEEECCCCcCCeec-CCCCCcCCEEECCCCccce-ec--ccc
Confidence 35566666666666554331 0 0 111111 46666666666654 5666666666666666664 22 555
Q ss_pred CCCccEEEcCCC-CCCCCCCCCCCCCcCEEEccCCCCCccc---cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCC
Q psy13451 410 LVACESLKLTHC-SLSSLHVFPHLPSLESLDVSHNAPNIIL---CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI 485 (522)
Q Consensus 410 l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~ls~N~l~~~~---~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l 485 (522)
+++|+.|++++| .+..+ .+..+++|+.|++++|.++.++ +++|+.|++++|.++++ +++.+++|+.|++++|.+
T Consensus 147 l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 147 NTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp CTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCC
T ss_pred CCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcc
Confidence 566666666666 33333 3555666666666666666554 34566666666666665 355566666666666666
Q ss_pred CCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 486 DHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 486 ~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
++++ ++.+++|+.|++++|++++.
T Consensus 225 ~~ip---~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 225 TEID---VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp SCCC---CTTCTTCSEEECCSSCCSCC
T ss_pred cccC---ccccCCCCEEEeeCCcCCCc
Confidence 6654 45566666666666666543
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=2.5e-14 Score=133.49 Aligned_cols=120 Identities=21% Similarity=0.248 Sum_probs=110.7
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N 443 (522)
+.|++++|.|+.++. +..+++|+.|+|++|.+++..|..|.++++|+.|+|++|.|+.++. |..+++|+.|++++|
T Consensus 35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN 114 (220)
T ss_dssp CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC
Confidence 799999999999875 8899999999999999998889999999999999999999999874 788999999999999
Q ss_pred CCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCC
Q psy13451 444 APNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDH 487 (522)
Q Consensus 444 ~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~ 487 (522)
.++.++ +++|+.|+|++|.|+.+++ +..+++|+.|+|++|.+..
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 115 KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 998775 4789999999999999886 8889999999999999864
No 108
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=1.2e-13 Score=128.92 Aligned_cols=191 Identities=9% Similarity=-0.049 Sum_probs=161.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCcc
Q psy13451 26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIP-DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYG 104 (522)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np-~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~ 104 (522)
.+..........|++ ++|+..+.+++.++| .+..+|..++.+...++. +++++..+++++..+|++..
T Consensus 9 ~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~ 77 (228)
T 4i17_A 9 QLKNEGNDALNAKNY-AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK----------YKEAADYFDIAIKKNYNLAN 77 (228)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHTTCSHHH
T ss_pred HHHHHHHHHHHccCH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc----------HHHHHHHHHHHHHhCcchHH
Confidence 344455566677777 889999999999999 999999999999999988 79999999999999999999
Q ss_pred chhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc-------chhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCC--cc
Q psy13451 105 TWFQRCYVLDHISRAPNYEKELELCNYYLELDERNF-------HCWDYRRYVTDRHKVAPLKELNYSTEKIEANFS--NY 175 (522)
Q Consensus 105 ~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~-------~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~--n~ 175 (522)
+|..++.++... +++++++..++++++.+|++. .+|...+.+....+. +++++++++++++.+|. +.
T Consensus 78 ~~~~l~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~ 153 (228)
T 4i17_A 78 AYIGKSAAYRDM---KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN-IEKAEENYKHATDVTSKKWKT 153 (228)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHHHc---ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc-HHHHHHHHHHHHhcCCCcccH
Confidence 999999999999 999999999999999999999 679999999999988 79999999999999999 88
Q ss_pred hHhhHHHHHhchhCCC--------CCCC-------CccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHh
Q psy13451 176 SAWHYRSKLLPLLYPD--------PNNH-------LPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL 231 (522)
Q Consensus 176 saW~~r~~ll~~l~~~--------~~~~-------~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll 231 (522)
.+|...+.+....... .... .....+.++++++++++++..+|+|..+......+-
T Consensus 154 ~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 154 DALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 9999999887655111 0000 000113348999999999999999998887665553
No 109
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.55 E-value=8.1e-14 Score=144.50 Aligned_cols=157 Identities=18% Similarity=0.188 Sum_probs=114.9
Q ss_pred ccccccCccCcchhhchhhhhhhhcccccCCCCC-cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCC
Q psy13451 334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN-QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVA 412 (522)
Q Consensus 334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~-~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 412 (522)
++|+.|+++++.... ++.+. +. ++|++++|.++++|.+..+++|+.|++++|.+++ +|..+ .+
T Consensus 111 ~~L~~L~l~~n~l~~-----------l~~~~-~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp~~~---~~ 174 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-----------LSDLP-PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDLP---PS 174 (454)
T ss_dssp TTCCEEECCSSCCSC-----------CCSCC-TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC-CCCCC---TT
T ss_pred CCCcEEECCCCccCc-----------ccCCC-CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc-cCCCc---cc
Confidence 667777776654332 11111 22 6888888888888888888888889998888884 55433 58
Q ss_pred ccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc--cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCCh
Q psy13451 413 CESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL--CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIED 490 (522)
Q Consensus 413 L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~--~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~ 490 (522)
|++|++++|.++.+|.++.+++|+.|++++|.+++++ +.+|+.|++++|.++.++.+..+++|+.|++++|.+++++.
T Consensus 175 L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 175 LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS
T ss_pred ccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc
Confidence 8888888888888888888888888888888888765 46788888888888877777788888888888888877652
Q ss_pred hhhcCCCCccEEEecCCCCc
Q psy13451 491 SVFAKYEACVQVILTGNPVS 510 (522)
Q Consensus 491 ~~l~~l~~L~~L~L~~N~l~ 510 (522)
..++|+.|++++|.++
T Consensus 255 ----~~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 255 ----LPPSLEALNVRDNYLT 270 (454)
T ss_dssp ----CCTTCCEEECCSSCCS
T ss_pred ----cccccCEEECCCCccc
Confidence 1245555555555544
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=1.3e-14 Score=126.60 Aligned_cols=121 Identities=21% Similarity=0.254 Sum_probs=96.4
Q ss_pred CCcccEEEecCCCCC-CcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc-cc-----cCcccEEEc
Q psy13451 386 FAHCKQVDLSNNPLT-NNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI-IL-----CVYFQSLKL 458 (522)
Q Consensus 386 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~-~~-----~~~L~~L~L 458 (522)
.++++.|++++|.++ +.+|..+..+++|+.|++++|.++.++.++.+++|+.|++++|.++. ++ +++|+.|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 467777788888776 56777777778888888888887777667777888888888888776 33 577888888
Q ss_pred CCCCCCCCC---CCCCCCCCCEEEccCCCCCCCCh---hhhcCCCCccEEEecC
Q psy13451 459 THCSLSSLH---VFPHLPSLESLDVSHNAIDHIED---SVFAKYEACVQVILTG 506 (522)
Q Consensus 459 s~n~l~~~~---~l~~~~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~~L~L~~ 506 (522)
++|.+++++ .+..+++|+.|++++|.++++++ ..++.+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888753 37889999999999999999886 6789999999998864
No 111
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.55 E-value=5e-14 Score=153.61 Aligned_cols=165 Identities=10% Similarity=0.078 Sum_probs=150.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchh
Q psy13451 28 METIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWF 107 (522)
Q Consensus 28 ~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~ 107 (522)
.+........|++ ++|++.+.++|+++|++..+|+.++.++..+++ +++++..++++|+.+|++..+|+
T Consensus 13 ~nLG~~~~~~G~~-~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~----------~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 13 NNLANIKREQGNI-EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK----------LQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 3445556677777 899999999999999999999999999999998 79999999999999999999999
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhch
Q psy13451 108 QRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPL 187 (522)
Q Consensus 108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~ 187 (522)
.++.++..+ +++++++++++++++++|++..+|...+.++...+. +++++++++++++.+|.+..+|.+++.++..
T Consensus 82 nLg~~l~~~---g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 82 NMGNTLKEM---QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN-IPEAIASYRTALKLKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence 999999999 999999999999999999999999999999999998 7999999999999999999999999999998
Q ss_pred hCCCCCCCCccchhHHHHHHHHHHHHHhcCCC
Q psy13451 188 LYPDPNNHLPIEQDKYVNEFSMVESAVFTEPK 219 (522)
Q Consensus 188 l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~ 219 (522)
+ +.++++.+.+++++.+.|+
T Consensus 158 ~------------g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 158 V------------CDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp T------------TCCTTHHHHHHHHHHHHHH
T ss_pred c------------ccHHHHHHHHHHHHHhChh
Confidence 8 5566677777777766554
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=8e-14 Score=130.85 Aligned_cols=121 Identities=24% Similarity=0.224 Sum_probs=109.5
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N 443 (522)
+.|++++|.|+.++. +..+++|+.|+|++|.++...+..|..+++|+.|+|++|.|+.++. |..+++|+.|++++|
T Consensus 43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence 799999999999854 8899999999999999986655778999999999999999999863 789999999999999
Q ss_pred CCCccc-----cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCC
Q psy13451 444 APNIIL-----CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHI 488 (522)
Q Consensus 444 ~l~~~~-----~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~ 488 (522)
.++.++ .++|+.|+|++|.|+.+++ +..+++|+.|+|++|.+...
T Consensus 123 ~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 123 KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999876 5789999999999999875 88899999999999998754
No 113
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.54 E-value=5.9e-15 Score=165.07 Aligned_cols=145 Identities=22% Similarity=0.251 Sum_probs=82.7
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC-----------------
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV----------------- 428 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------- 428 (522)
+.|++++|.++.+++ +..+++|+.|++++|.+++..+..|..+++|+.|++++|.++.++.
T Consensus 317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l 396 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL 396 (844)
T ss_dssp CEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCC
T ss_pred CEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccc
Confidence 456666666655422 5566666666666666654444555566666666666665554321
Q ss_pred -------------------------CCCCCCcCEEEccCCCCCccc-------cCcccEEEcCCCCCCCCC-------CC
Q psy13451 429 -------------------------FPHLPSLESLDVSHNAPNIIL-------CVYFQSLKLTHCSLSSLH-------VF 469 (522)
Q Consensus 429 -------------------------~~~l~~L~~L~ls~N~l~~~~-------~~~L~~L~Ls~n~l~~~~-------~l 469 (522)
+..+++|+.|++++|.++.++ .++|+.|++++|.++... .+
T Consensus 397 ~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 476 (844)
T 3j0a_A 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476 (844)
T ss_dssp CCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred cccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhh
Confidence 113344444555555444221 234455555555544221 14
Q ss_pred CCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 470 PHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 470 ~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
..+++|+.|+|++|.++++++..|..+++|+.|+|++|.++..
T Consensus 477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 519 (844)
T 3j0a_A 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519 (844)
T ss_dssp SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence 5566677777777777777767777778888888888877643
No 114
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.54 E-value=1.1e-14 Score=154.90 Aligned_cols=172 Identities=16% Similarity=0.198 Sum_probs=131.9
Q ss_pred ccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCC
Q psy13451 334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLV 411 (522)
Q Consensus 334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 411 (522)
++|+.||++++......+..+.. +..+ ++|++++|.++.+++ +..+++|++|++++|.+++..|..|+.++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~---l~~L----~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRA---CANL----QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSS---CTTC----CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEEECcCCccCccChhhhhc---CCcc----cEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 68888998887755433322211 1222 689999999998764 88899999999999999877777788999
Q ss_pred CccEEEcCCCCCCCC---CCCCCCCCcCEEEccCCC-CCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEE
Q psy13451 412 ACESLKLTHCSLSSL---HVFPHLPSLESLDVSHNA-PNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLD 479 (522)
Q Consensus 412 ~L~~L~l~~n~l~~~---~~~~~l~~L~~L~ls~N~-l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~ 479 (522)
+|++|++++|.++.+ +.++.+++|+.|++++|. ++.++ +++|+.|++++|.+++..+ +..+++|+.|+
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 999999999998864 357888999999999987 55443 4678899999999887543 77788888888
Q ss_pred ccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 480 VSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 480 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
+++|.+..++...++.+++|+.|++++|.++..
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cccCcccccchhhHhhcccccEEEccCCccccc
Confidence 888887776655566778888888888887763
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=5.7e-14 Score=131.02 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=109.5
Q ss_pred cEEEecCCCcccccC---cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccC
Q psy13451 368 QITNLSSLQLTSIHH---MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSH 442 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~ 442 (522)
+.|++++|.|+.++. +..+++|+.|+|++|.+++..+..|..+++|+.|++++|.++.++. |..+++|+.|++++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 799999999999843 7899999999999999997777789999999999999999999863 88999999999999
Q ss_pred CCCCccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCC
Q psy13451 443 NAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHI 488 (522)
Q Consensus 443 N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~ 488 (522)
|.++.++ +++|+.|+|++|.|+++++ +..+++|+.|+|++|.+...
T Consensus 115 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9998774 4789999999999999855 88999999999999998753
No 116
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.53 E-value=1.4e-13 Score=147.59 Aligned_cols=135 Identities=23% Similarity=0.169 Sum_probs=104.9
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI 447 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~ 447 (522)
+.|++++|.|+.+| ..+++|+.|++++|.++ .+|.. +++|+.|++++|.++.+|.. +++|+.|++++|.++.
T Consensus 164 ~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~ 235 (622)
T 3g06_A 164 CKLWAYNNQLTSLP--MLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTS 235 (622)
T ss_dssp CEEECCSSCCSCCC--CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC
T ss_pred CEEECCCCCCCCCc--ccCCCCcEEECCCCCCC-CCCCc---cchhhEEECcCCcccccCCC--CCCCCEEEccCCccCc
Confidence 45555555555555 33467777777777776 34432 36777777777777777642 4789999999999988
Q ss_pred cc--cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 448 IL--CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 448 ~~--~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
++ +++|+.|++++|.|+.++. .+++|+.|+|++|.|+.+| ..+..+++|+.|+|++|++++..
T Consensus 236 lp~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 236 LPVLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CCCCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCC-GGGGGSCTTCEEECCSCCCCHHH
T ss_pred CCCCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCC-HHHhhccccCEEEecCCCCCCcC
Confidence 76 5789999999999998876 6789999999999999886 56899999999999999998654
No 117
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.53 E-value=8.3e-14 Score=151.87 Aligned_cols=160 Identities=11% Similarity=0.024 Sum_probs=152.4
Q ss_pred hCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHH
Q psy13451 54 NIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYL 133 (522)
Q Consensus 54 ~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l 133 (522)
-+|++..+|+..+.++...++ +++++..++++|+.+|++..+|+.++.++..+ ++++++++.+++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~----------~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~---g~~~eA~~~~~~Al 70 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGN----------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ---GKLQEALMHYKEAI 70 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Confidence 479999999999999999998 89999999999999999999999999999999 99999999999999
Q ss_pred hhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHH
Q psy13451 134 ELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESA 213 (522)
Q Consensus 134 ~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~a 213 (522)
+++|++..+|...+.++..++. +++++++++++++.+|.+..||++++.++..+ ++++++++++++|
T Consensus 71 ~l~P~~~~a~~nLg~~l~~~g~-~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~------------g~~~eAi~~~~~A 137 (723)
T 4gyw_A 71 RISPTFADAYSNMGNTLKEMQD-VQGALQCYTRAIQINPAFADAHSNLASIHKDS------------GNIPEAIASYRTA 137 (723)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------CCHHHHHHHHHHH
Confidence 9999999999999999999998 79999999999999999999999999999988 8899999999999
Q ss_pred HhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 214 VFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 214 i~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
+.++|++..+|..+..++...++...
T Consensus 138 l~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 138 LKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999988877654
No 118
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.52 E-value=4.9e-14 Score=148.85 Aligned_cols=145 Identities=22% Similarity=0.244 Sum_probs=119.6
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC----CCCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH----VFPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~ls~N 443 (522)
+.|++++|++..++.+..+++|+.|++++|.+++..|..+..+++|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus 305 ~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred eEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 566777776666554468899999999999999888999999999999999999999754 3788999999999999
Q ss_pred CCCc-cc------cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 444 APNI-IL------CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 444 ~l~~-~~------~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
.++. ++ +++|+.|++++|.+++..+-.-.++|+.|+|++|.|+.++.. +..+++|+.|++++|+++...
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQ-VVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCC
T ss_pred cCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchh-hhcCCCCCEEECCCCcCCccC
Confidence 9987 55 368999999999997654311127999999999999988754 458999999999999998543
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=9.4e-15 Score=131.31 Aligned_cols=126 Identities=20% Similarity=0.169 Sum_probs=87.5
Q ss_pred cCCCCcccEEEecCCCCCCcccccCCCC-CCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc------cCcccE
Q psy13451 383 MHCFAHCKQVDLSNNPLTNNCLRHLTPL-VACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL------CVYFQS 455 (522)
Q Consensus 383 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~------~~~L~~ 455 (522)
+..+++|+.|++++|.++ .+|. +..+ ++|+.|++++|.++.++.+..+++|+.|++++|.++.++ +++|+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 445566666666666666 3333 3333 366666666666666666666666666677666666544 356677
Q ss_pred EEcCCCCCCCCCC---CCCCCCCCEEEccCCCCCCCChh---hhcCCCCccEEEecCCCCc
Q psy13451 456 LKLTHCSLSSLHV---FPHLPSLESLDVSHNAIDHIEDS---VFAKYEACVQVILTGNPVS 510 (522)
Q Consensus 456 L~Ls~n~l~~~~~---l~~~~~L~~L~Ls~N~l~~~~~~---~l~~l~~L~~L~L~~N~l~ 510 (522)
|++++|.|+.++. +..+++|+.|++++|.++.++.. .+..+++|+.|++++|.+.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777766553 67788999999999999887743 5888999999999998764
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.51 E-value=7.3e-14 Score=144.84 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=59.4
Q ss_pred cccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc----cCcccEEEcCCCCC
Q psy13451 388 HCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSL 463 (522)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~----~~~L~~L~Ls~n~l 463 (522)
+|+.|++++|.+++ +| .|+.+++|++|++++|.++++|.. .++|+.|++++|.++.++ +++|+.|++++|.+
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcC
Confidence 44444444444442 33 244444444444444444444321 124444444444444433 23444555555555
Q ss_pred CCCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcc
Q psy13451 464 SSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511 (522)
Q Consensus 464 ~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 511 (522)
++++.. .++|+.|++++|.++.++ .++.+++|+.|++++|.++.
T Consensus 208 ~~l~~~--~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 208 KKLPDL--PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp SSCCCC--CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS
T ss_pred CcCCCC--cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCc
Confidence 444332 135566666666666554 36777888888888887765
No 121
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.51 E-value=6.2e-14 Score=149.66 Aligned_cols=143 Identities=24% Similarity=0.260 Sum_probs=68.9
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N 443 (522)
+.|++++|.++.++. +..+++|+.|++++|.+++..+..|..+++|++|++++|.++.++ .|..+++|++|++++|
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence 445555555554432 445555555555555555443444555555555555555554432 3445555555555555
Q ss_pred CCCccc------cCcccEEEcCCCCCCCC--CC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCc----cEEEecCCCCc
Q psy13451 444 APNIIL------CVYFQSLKLTHCSLSSL--HV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEAC----VQVILTGNPVS 510 (522)
Q Consensus 444 ~l~~~~------~~~L~~L~Ls~n~l~~~--~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L----~~L~L~~N~l~ 510 (522)
.++.++ +.+|+.|++++|.++++ +. ++.+++|++|++++|.++.+++..++.+++| ..|++++|.++
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce
Confidence 544332 23445555555555442 22 4445555555555555555444444444444 44555555443
No 122
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.51 E-value=9.9e-14 Score=140.26 Aligned_cols=168 Identities=12% Similarity=0.052 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN 121 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~ 121 (522)
++|+..+.+++.++|++..+|..++.++...+. +++++..++.+++.+|+++.+|...+.++... ++
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~ 150 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGD----------MEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL---GR 150 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC----------SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT---SC
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---cC
Confidence 444555555555555555555555555444444 24444444444444444444444444444444 44
Q ss_pred hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchh
Q psy13451 122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201 (522)
Q Consensus 122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 201 (522)
++++++.++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|..++.++... +
T Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------------~ 217 (388)
T 1w3b_A 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE-IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA------------R 217 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT------------T
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc------------C
Confidence 4444555555555455444444444444444444 34444444555555555444444444444433 3
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCC
Q psy13451 202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERT 235 (522)
Q Consensus 202 ~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~ 235 (522)
.++++++.+.+++..+|++..+|.....++...+
T Consensus 218 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 251 (388)
T 1w3b_A 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC
Confidence 3444444444444444444444444444443333
No 123
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.50 E-value=8.5e-14 Score=151.89 Aligned_cols=172 Identities=9% Similarity=-0.082 Sum_probs=159.1
Q ss_pred hcCCCCHHHHHHHHHHH--------HhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchh
Q psy13451 36 KNQEYDDEALSLTSEVL--------RNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWF 107 (522)
Q Consensus 36 ~~~~~~~eal~~~~~~l--------~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~ 107 (522)
..|++ ++|++.+++++ ..+|++..+|..++.++...+. +++++..++++++.+|++..+|+
T Consensus 403 ~~~~~-~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~ 471 (681)
T 2pzi_A 403 VLSQP-VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD----------VAKATRKLDDLAERVGWRWRLVW 471 (681)
T ss_dssp TTCCH-HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cccCH-HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC----------HHHHHHHHHHHhccCcchHHHHH
Confidence 34444 88999999999 9999999999999999999998 79999999999999999999999
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhch
Q psy13451 108 QRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPL 187 (522)
Q Consensus 108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~ 187 (522)
+++.++... ++++++++.++++++.+|.+..+|..++.+....+. +++ +++++++++.+|.+..+|.+++.++..
T Consensus 472 ~lg~~~~~~---g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~-~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~ 546 (681)
T 2pzi_A 472 YRAVAELLT---GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN-TDE-HKFYQTVWSTNDGVISAAFGLARARSA 546 (681)
T ss_dssp HHHHHHHHH---TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-hHH-HHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999999999999998 577 999999999999999999999999998
Q ss_pred hCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCC
Q psy13451 188 LYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERT 235 (522)
Q Consensus 188 l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~ 235 (522)
+ +.++++++.+++|+..+|++..+|..+..++-..+
T Consensus 547 ~------------g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 547 E------------GDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp T------------TCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred c------------CCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 8 88999999999999999999999988888875543
No 124
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.50 E-value=1.7e-13 Score=138.47 Aligned_cols=181 Identities=10% Similarity=0.018 Sum_probs=162.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHH
Q psy13451 32 FEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCY 111 (522)
Q Consensus 32 ~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~ 111 (522)
......|.+ ++|++.+.+++.++|++.++|...+.++...+. +++++..++.++..+|.+..+|...+.
T Consensus 109 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~ 177 (388)
T 1w3b_A 109 AALVAAGDM-EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR----------LEEAKACYLKAIETQPNFAVAWSNLGC 177 (388)
T ss_dssp HHHHHHSCS-SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC----------HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344555666 778999999999999999999999999999888 799999999999999999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCC
Q psy13451 112 VLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPD 191 (522)
Q Consensus 112 il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~ 191 (522)
++... +++++++..++++++.+|.+..+|...+.+....+. ++++++.+.++++.+|.+..+|...+.+....
T Consensus 178 ~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--- 250 (388)
T 1w3b_A 178 VFNAQ---GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI-FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ--- 250 (388)
T ss_dssp HHHTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---
T ss_pred HHHHc---CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHc---
Confidence 99888 889999999999999999999999999999999888 68999999999999999999999999888877
Q ss_pred CCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 192 PNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 192 ~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
+.++++++.+.+++..+|++..+|..+..++...++...
T Consensus 251 ---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 251 ---------GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp ---------TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH
T ss_pred ---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 788999999999999999999999888888877776554
No 125
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.50 E-value=3.8e-14 Score=131.79 Aligned_cols=170 Identities=10% Similarity=-0.042 Sum_probs=154.1
Q ss_pred CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451 56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL 135 (522)
Q Consensus 56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~ 135 (522)
|.+..+|..++.++...+. +++++..++.+++.+|++..+|..++.++... +++++++..++++++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~~ 68 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGR----------YDAALTLFERALKENPQDPEALYWLARTQLKL---GLVNPALENGKTLVAR 68 (217)
T ss_dssp --CCHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHh
Confidence 7888999999999999988 79999999999999999999999999999999 9999999999999999
Q ss_pred cCCCcchhhHHHHHHHhc-----------CCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHH
Q psy13451 136 DERNFHCWDYRRYVTDRH-----------KVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYV 204 (522)
Q Consensus 136 d~kn~~aW~~R~~~l~~~-----------~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~ 204 (522)
+|.+..+|...+.+.... +. ++++++.++++++.+|.+..+|..++.++... +.++
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~------------g~~~ 135 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGY-LEQALSVLKDAERVNPRYAPLHLQRGLVYALL------------GERD 135 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------TCHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc------------CChH
Confidence 999999999999999998 87 69999999999999999999999999999988 8899
Q ss_pred HHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEEecccccccc
Q psy13451 205 NEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTS 263 (522)
Q Consensus 205 ~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (522)
++++.+++++..+ ++..+|..++.++...++... ++..|.+++.++|
T Consensus 136 ~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~-----------A~~~~~~al~~~P 182 (217)
T 2pl2_A 136 KAEASLKQALALE-DTPEIRSALAELYLSMGRLDE-----------ALAQYAKALEQAP 182 (217)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHH-----------HHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHH-----------HHHHHHHHHHhCC
Confidence 9999999999999 999999999999888887665 3444566655544
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.49 E-value=1.3e-13 Score=116.44 Aligned_cols=123 Identities=11% Similarity=0.117 Sum_probs=113.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHH
Q psy13451 49 SEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELEL 128 (522)
Q Consensus 49 ~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~ 128 (522)
.++..+||+...+|+.||..+...+. +++++..++++|+.+|++..+|..++.++..+ +++++++..
T Consensus 3 ar~a~inP~~a~~~~~~G~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~ 69 (126)
T 4gco_A 3 ARLAYINPELAQEEKNKGNEYFKKGD----------YPTAMRHYNEAVKRDPENAILYSNRAACLTKL---MEFQRALDD 69 (126)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred hHHHHHCHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh---ccHHHHHHH
Confidence 45667999999999999999999988 89999999999999999999999999999999 999999999
Q ss_pred HHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHh
Q psy13451 129 CNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLL 185 (522)
Q Consensus 129 ~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll 185 (522)
+++++++||++..+|..++.+...++. +++++++++++++.+|.|..|+...+.++
T Consensus 70 ~~~al~~~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 70 CDTCIRLDSKFIKGYIRKAACLVAMRE-WSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999998 79999999999999999999987766554
No 127
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.49 E-value=1.6e-13 Score=146.54 Aligned_cols=138 Identities=25% Similarity=0.296 Sum_probs=68.0
Q ss_pred EEEecCCCcccccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCC
Q psy13451 369 ITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAP 445 (522)
Q Consensus 369 ~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l 445 (522)
.+++++|+++.+|. + .++++.|++++|.+++..|..|..+++|++|++++|.++.++ .|..+++|++|++++|.+
T Consensus 35 ~l~ls~~~L~~ip~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp EEECTTSCCCSCCTTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEEcCCCCCccCCCCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 45555555555554 2 245555555555555444445555555555555555555542 245555555555555555
Q ss_pred Cccc---cCcccEEEcCCCCCCCCC--C-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCC
Q psy13451 446 NIIL---CVYFQSLKLTHCSLSSLH--V-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPV 509 (522)
Q Consensus 446 ~~~~---~~~L~~L~Ls~n~l~~~~--~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l 509 (522)
+.++ +++|+.|++++|.++.++ . ++.+++|+.|++++|.++......+..+ +|+.|++++|.+
T Consensus 113 ~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l 181 (562)
T 3a79_B 113 QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSY 181 (562)
T ss_dssp CEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSC
T ss_pred CccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccc
Confidence 5444 244555555555555433 1 4555555555555555544322222222 225555555554
No 128
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.49 E-value=2.3e-13 Score=152.13 Aligned_cols=170 Identities=17% Similarity=0.208 Sum_probs=120.8
Q ss_pred ccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCC
Q psy13451 334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLV 411 (522)
Q Consensus 334 ~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 411 (522)
++|+.|+++++......+..+.. ++.+ +.|++++|.++.+++ +..+++|+.|+|++|.+++..|..|..++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~---l~~L----~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFET---LKDL----KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSS---CCCC----CEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred CCccEEECCCCcccccChhhhhc---CCCC----CEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 67888888877655432222111 1112 689999999998754 88899999999999999977788999999
Q ss_pred CccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc-cCcccEEEcCCCCCCCCCC--------------------
Q psy13451 412 ACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL-CVYFQSLKLTHCSLSSLHV-------------------- 468 (522)
Q Consensus 412 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~-~~~L~~L~Ls~n~l~~~~~-------------------- 468 (522)
+|+.|++++|.++.++ .|..+++|+.|++++|.++.++ .++|+.|++++|.++.++.
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI 418 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCch
Confidence 9999999999998876 4888999999999999988765 4667777777776665543
Q ss_pred ---CCCCCCCCEEEccCCCCCCCCh-hhhcCCCCccEEEecCCCCc
Q psy13451 469 ---FPHLPSLESLDVSHNAIDHIED-SVFAKYEACVQVILTGNPVS 510 (522)
Q Consensus 469 ---l~~~~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~ 510 (522)
+..+++|+.|+|++|.++..+. ..+..+++|+.|+|++|.++
T Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464 (844)
T ss_dssp HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCS
T ss_pred hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccc
Confidence 2245556666666666555432 23344556666666666554
No 129
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.48 E-value=8.8e-14 Score=139.30 Aligned_cols=186 Identities=11% Similarity=0.093 Sum_probs=122.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451 27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW 106 (522)
Q Consensus 27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W 106 (522)
++.........|.+ ++|+..+.+++.++|++..+|+..+.++...+. +++++..+++++..+|++..+|
T Consensus 68 ~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~ 136 (365)
T 4eqf_A 68 AFEEGLKRLKEGDL-PVTILFMEAAILQDPGDAEAWQFLGITQAENEN----------EQAAIVALQRCLELQPNNLKAL 136 (365)
T ss_dssp HHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHCCCH-HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCCCCHHHH
Confidence 34444455555655 778888888888888888888888888888777 6788888888888888888888
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHH----------HHHHHhcCCCCHHHHHHHHHHHHhcCC--c
Q psy13451 107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYR----------RYVTDRHKVAPLKELNYSTEKIEANFS--N 174 (522)
Q Consensus 107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R----------~~~l~~~~~~~~~el~~~~~~i~~~~~--n 174 (522)
...+.++... +++++++..++++++.+|.+..+|..+ +.+....+. +++++++++++++.+|. +
T Consensus 137 ~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 137 MALAVSYTNT---SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV-LEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHH-HHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHcc---ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhCcCccC
Confidence 8888887777 667777777777777777666666555 334444333 45666666666666666 5
Q ss_pred chHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 175 YSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 175 ~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
..+|...+.++... +.++++++++.+++..+|++..+|..++.++...+++..
T Consensus 213 ~~~~~~l~~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 213 PDLQTGLGVLFHLS------------GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp HHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 56666666665555 556666666666666666666666666666655555443
No 130
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.48 E-value=3e-13 Score=124.82 Aligned_cols=174 Identities=9% Similarity=0.003 Sum_probs=143.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHH----------------HHHHHHHhhccccHHHHHHHHHHHH
Q psy13451 26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNY----------------RKEVLLHMKATLAEEELHELVDREL 89 (522)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~----------------R~~~l~~l~~~~~~~~~~~~~~~eL 89 (522)
.++.+.......|++ ++|+..+.+++.++|++..+|.+ ++.++...+. +++++
T Consensus 6 ~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~ 74 (208)
T 3urz_A 6 EMLQKVSAAIEAGQN-GQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN----------YDKAY 74 (208)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC----------HHHHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC----------HHHHH
Confidence 456667777788888 88999999999999999999999 9999999888 79999
Q ss_pred HHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCC-CHHHHHHHHHHH
Q psy13451 90 KLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVA-PLKELNYSTEKI 168 (522)
Q Consensus 90 ~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~-~~~el~~~~~~i 168 (522)
..++++++.+|++..+|..++.++... +++++++..++++++++|.|..+|...+.+....+.. .......+.+.+
T Consensus 75 ~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 75 LFYKELLQKAPNNVDCLEACAEMQVCR---GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 9999999999999999999999999999988654321 123344555555
Q ss_pred HhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHH
Q psy13451 169 EANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQ 227 (522)
Q Consensus 169 ~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~ 227 (522)
..+| ...+|++++...... +.++++++++++|+..+|+++ +..+.
T Consensus 152 ~~~~-~~~a~~~~g~~~~~~------------~~~~~A~~~~~~al~l~P~~~-~~~~l 196 (208)
T 3urz_A 152 SPTK-MQYARYRDGLSKLFT------------TRYEKARNSLQKVILRFPSTE-AQKTL 196 (208)
T ss_dssp CCCH-HHHHHHHHHHHHHHH------------HTHHHHHHHHHHHTTTSCCHH-HHHHH
T ss_pred CCCc-hhHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCHH-HHHHH
Confidence 4333 334788888877776 889999999999999999754 44333
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=7.1e-15 Score=149.32 Aligned_cols=179 Identities=16% Similarity=0.131 Sum_probs=136.6
Q ss_pred HHHHhcccccccCccCcchhhc----hhhhhhhhcccccCCCCCcEEEecCCCcccc-----cC-cCCC---------Cc
Q psy13451 328 IILKRFDLLKTLDPLRLNYYKD----SESKYKIETFIQTNPRANQITNLSSLQLTSI-----HH-MHCF---------AH 388 (522)
Q Consensus 328 ~~l~~l~~L~~Ldl~~~~~~~~----l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l-----~~-~~~l---------~~ 388 (522)
..+..+++|+.|+++++.+... ++..+.. ++.+ +.|++++|.++.. +. +..+ ++
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~---~~~L----~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK---HTPL----EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP 160 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHH---CTTC----CEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHh---CCCC----CEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC
Confidence 3457889999999999887663 2222221 2222 5999999999753 22 3333 89
Q ss_pred ccEEEecCCCCC-Cccc---ccCCCCCCccEEEcCCCCCCC------CC-CCCCCCCcCEEEccCCCCC-----ccc---
Q psy13451 389 CKQVDLSNNPLT-NNCL---RHLTPLVACESLKLTHCSLSS------LH-VFPHLPSLESLDVSHNAPN-----IIL--- 449 (522)
Q Consensus 389 L~~L~Ls~n~l~-~~~~---~~~~~l~~L~~L~l~~n~l~~------~~-~~~~l~~L~~L~ls~N~l~-----~~~--- 449 (522)
|+.|++++|.++ +.++ ..+..+++|+.|++++|.++. ++ .+..+++|+.|++++|.++ .++
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 999999999997 3344 456678899999999999983 34 6788999999999999995 222
Q ss_pred --cCcccEEEcCCCCCCCCC-----C-C--CCCCCCCEEEccCCCCCC-----CChhhhcCCCCccEEEecCCCCcccc
Q psy13451 450 --CVYFQSLKLTHCSLSSLH-----V-F--PHLPSLESLDVSHNAIDH-----IEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 450 --~~~L~~L~Ls~n~l~~~~-----~-l--~~~~~L~~L~Ls~N~l~~-----~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
.++|+.|+|++|.|++.+ . + +.+++|+.|+|++|.|+. ++......+++|+.|++++|++++..
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 578999999999998752 1 3 458999999999999998 44433367899999999999999766
No 132
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=2.8e-13 Score=141.41 Aligned_cols=185 Identities=15% Similarity=0.094 Sum_probs=165.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451 31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC 110 (522)
Q Consensus 31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~ 110 (522)
.......|++.++|++.+.+++.++|++..+|+..+.++...+. +++++..+++++..+|+ ..+|...+
T Consensus 109 g~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~-~~~~~~lg 177 (474)
T 4abn_A 109 GKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD----------VTSAHTCFSGALTHCKN-KVSLQNLS 177 (474)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHTTCCC-HHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCC-HHHHHHHH
Confidence 33444557777999999999999999999999999999999988 79999999999999999 68999999
Q ss_pred HHHHHhc------CCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc--------CCCCHHHHHHHHHHHHhcC---C
Q psy13451 111 YVLDHIS------RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRH--------KVAPLKELNYSTEKIEANF---S 173 (522)
Q Consensus 111 ~il~~l~------~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~--------~~~~~~el~~~~~~i~~~~---~ 173 (522)
.++.... ..++++++++.++++++.+|.+..+|...+.++... +. +++++++++++++.+| .
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI-SQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH-HHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch-HHHHHHHHHHHHHhCCCccc
Confidence 8886640 015789999999999999999999999999999887 66 6999999999999999 9
Q ss_pred cchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 174 NYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 174 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
+..+|.+++.++... +.++++++++.+|+..+|++..+|..+..++...++...
T Consensus 257 ~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 257 NPDLHLNRATLHKYE------------ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 889999999999999999999999999998877765443
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.46 E-value=1.1e-12 Score=140.56 Aligned_cols=112 Identities=26% Similarity=0.205 Sum_probs=71.0
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCc
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNI 447 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~ 447 (522)
++|++++|.|+.+|. .+++|+.|++++|.++ .+|. .+++|+.|++++|.++.+|.. +++|+.|++++|.++.
T Consensus 84 ~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~lp~~--l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 84 RTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLAS 155 (622)
T ss_dssp CEEEECSCCCSCCCC--CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSC
T ss_pred CEEEcCCCcCCcCCC--CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCcCCCC--CCCCCEEECcCCcCCC
Confidence 466666666666655 4556666666666665 2333 345666666666666665532 3566777777776666
Q ss_pred cc--cCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCC
Q psy13451 448 IL--CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489 (522)
Q Consensus 448 ~~--~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~ 489 (522)
++ +++|+.|++++|.|+.++ ..+++|+.|++++|.|++++
T Consensus 156 l~~~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~ 197 (622)
T 3g06_A 156 LPALPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLP 197 (622)
T ss_dssp CCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCC
T ss_pred cCCccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCC
Confidence 54 456667777777766665 34577888888888887765
No 134
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.46 E-value=1.4e-13 Score=137.86 Aligned_cols=194 Identities=10% Similarity=-0.032 Sum_probs=166.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhH--
Q psy13451 32 FEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQR-- 109 (522)
Q Consensus 32 ~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R-- 109 (522)
......|++ ++|+..+.+++.++|++..+|...+.++...+. +++++..++.+++.+|++..+|..+
T Consensus 107 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~~ 175 (365)
T 4eqf_A 107 ITQAENENE-QAAIVALQRCLELQPNNLKALMALAVSYTNTSH----------QQDACEALKNWIKQNPKYKYLVKNKKG 175 (365)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCHHHHCC------
T ss_pred HHHHHCCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc----------HHHHHHHHHHHHHhCccchHHHhhhcc
Confidence 334445655 889999999999999999999999999999988 7999999999999999999999887
Q ss_pred --------HHHHHHhcCCCChHHHHHHHHHHHhhcCC--CcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhh
Q psy13451 110 --------CYVLDHISRAPNYEKELELCNYYLELDER--NFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWH 179 (522)
Q Consensus 110 --------~~il~~l~~~~~~~~el~~~~~~l~~d~k--n~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~ 179 (522)
+.++... +++++++.+++++++.+|. +..+|...+.+....+. +++++++++++++.+|.+..+|.
T Consensus 176 ~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~ 251 (365)
T 4eqf_A 176 SPGLTRRMSKSPVDS---SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE-FNRAIDAFNAALTVRPEDYSLWN 251 (365)
T ss_dssp -------------CC---HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred chHHHHHHHHHHhhh---hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHH
Confidence 5555555 8899999999999999999 88999999999999988 79999999999999999999999
Q ss_pred HHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEEecccc
Q psy13451 180 YRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLV 259 (522)
Q Consensus 180 ~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (522)
..+.++... +.++++++++.+++..+|++..+|..++.++...+++.. |...|.+++
T Consensus 252 ~l~~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~-----------A~~~~~~al 308 (365)
T 4eqf_A 252 RLGATLANG------------DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE-----------AVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH-----------HHHHHHHHH
T ss_pred HHHHHHHHc------------CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH-----------HHHHHHHHH
Confidence 999999888 889999999999999999999999999999988887665 444566666
Q ss_pred cccc
Q psy13451 260 DLTS 263 (522)
Q Consensus 260 ~~~~ 263 (522)
.+.|
T Consensus 309 ~~~~ 312 (365)
T 4eqf_A 309 SLQR 312 (365)
T ss_dssp HHHH
T ss_pred HhCc
Confidence 6554
No 135
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.46 E-value=1.2e-12 Score=128.30 Aligned_cols=193 Identities=8% Similarity=-0.043 Sum_probs=148.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHH
Q psy13451 34 KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVL 113 (522)
Q Consensus 34 ~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il 113 (522)
....|...++|+..+.+++.++|++..+|...+.++...+. +++++..++.++..+|++..+|...+.+.
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE----------HDQAMAAYFTAAQLMKGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 33444344667777777777777777777777777777766 67777888888888888777777777777
Q ss_pred HHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhc---------CCcchHhhHHHHH
Q psy13451 114 DHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEAN---------FSNYSAWHYRSKL 184 (522)
Q Consensus 114 ~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~---------~~n~saW~~r~~l 184 (522)
... +++++++..++++++.+|.+..+|...+.+....+. +++++++++++++.. |.+..+|...+.+
T Consensus 170 ~~~---~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 170 GLT---NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHT---TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HHH---hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 777 777888888888888888888888888888877776 677888888888876 6666778777777
Q ss_pred hchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEEecccccccc
Q psy13451 185 LPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTS 263 (522)
Q Consensus 185 l~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (522)
.... +.++++++++.+++..+|++..+|.....++...++... |...|.+++.++|
T Consensus 246 ~~~~------------g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~-----------A~~~~~~al~~~p 301 (330)
T 3hym_B 246 CRKL------------KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFEN-----------AVDYFHTALGLRR 301 (330)
T ss_dssp HHHT------------TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHH-----------HHHHHHTTTTTCS
T ss_pred HHHh------------cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHH-----------HHHHHHHHHccCC
Confidence 7766 789999999999999999999999999999988877655 3444566555543
No 136
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=2.1e-13 Score=127.66 Aligned_cols=179 Identities=12% Similarity=0.091 Sum_probs=129.1
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHH
Q psy13451 34 KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVL 113 (522)
Q Consensus 34 ~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il 113 (522)
....|++ ++|+..+.+++..+|++..+|..++.++...+. +++++..++.++..+|++..+|...+.+.
T Consensus 33 ~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 33 GSEFGDY-EKAAEAFTKAIEENKEDAIPYINFANLLSSVNE----------LERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp ----------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhhCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3444555 667777777777788777777777777777766 57777777777777777777777777777
Q ss_pred HHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCC
Q psy13451 114 DHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPN 193 (522)
Q Consensus 114 ~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~ 193 (522)
... +++++++..++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+....
T Consensus 102 ~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 172 (243)
T 2q7f_A 102 VVK---EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ-PKLALPYLQRAVELNENDTEARFQFGMCLANE----- 172 (243)
T ss_dssp HHT---TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----
T ss_pred HHh---ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-----
Confidence 777 777777777888877777777777777777777776 57777777777777777777777777777666
Q ss_pred CCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 194 NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 194 ~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
+.++++++++.+++..+|.+..+|..+..+....+....
T Consensus 173 -------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 211 (243)
T 2q7f_A 173 -------GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREK 211 (243)
T ss_dssp -------TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTH
T ss_pred -------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHH
Confidence 566777777777777777777777777777766665443
No 137
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=5.2e-12 Score=118.07 Aligned_cols=174 Identities=12% Similarity=0.050 Sum_probs=158.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451 31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC 110 (522)
Q Consensus 31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~ 110 (522)
.......|++ ++|+..+.+++.++|++..+|...+.++...+. +++++..++++++.+|++..+|...+
T Consensus 64 a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~a 132 (243)
T 2q7f_A 64 ANLLSSVNEL-ERALAFYDKALELDSSAATAYYGAGNVYVVKEM----------YKEAKDMFEKALRAGMENGDLFYMLG 132 (243)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3334455655 889999999999999999999999999999887 79999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCC
Q psy13451 111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYP 190 (522)
Q Consensus 111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~ 190 (522)
.+.... +++++++..++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+....
T Consensus 133 ~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 206 (243)
T 2q7f_A 133 TVLVKL---EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM-LDEALSQFAAVTEQDPGHADAFYNAGVTYAYK-- 206 (243)
T ss_dssp HHHHHT---SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred HHHHHh---ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--
Confidence 999998 999999999999999999999999999999999998 79999999999999999999999999999887
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHh
Q psy13451 191 DPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL 231 (522)
Q Consensus 191 ~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll 231 (522)
+.++++++++++++..+|++..+|..+..+-
T Consensus 207 ----------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 207 ----------ENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp ----------TCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred ----------cCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 7789999999999999999999997665543
No 138
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.43 E-value=4.9e-12 Score=123.87 Aligned_cols=186 Identities=11% Similarity=-0.010 Sum_probs=170.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451 27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW 106 (522)
Q Consensus 27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W 106 (522)
+..........|++ ++|+..+++++..+|.+..++.....++...+. +++++..++.++..+|++..+|
T Consensus 25 ~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~ 93 (330)
T 3hym_B 25 VVSLAERHYYNCDF-KMCYKLTSVVMEKDPFHASCLPVHIGTLVELNK----------ANELFYLSHKLVDLYPSNPVSW 93 (330)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhh----------HHHHHHHHHHHHHhCcCCHHHH
Confidence 34445555666776 889999999999999999999999999998887 7999999999999999999999
Q ss_pred hhHHHHHHHhcCCC-ChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHh
Q psy13451 107 FQRCYVLDHISRAP-NYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLL 185 (522)
Q Consensus 107 ~~R~~il~~l~~~~-~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll 185 (522)
...+.+.... + ++++++.+++++++.+|++..+|...+.+....+. ++++++.++++++.+|.+..+|.+.+.+.
T Consensus 94 ~~l~~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 94 FAVGCYYLMV---GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE-HDQAMAAYFTAAQLMKGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHS---CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHh---hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 9999999998 7 89999999999999999999999999999999998 79999999999999999999999999988
Q ss_pred chhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 186 PLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 186 ~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
... +.++++++++.+++..+|.+..+|.....++...++...
T Consensus 170 ~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 211 (330)
T 3hym_B 170 GLT------------NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKT 211 (330)
T ss_dssp HHT------------TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHH------------hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHH
Confidence 887 789999999999999999999999999999988877654
No 139
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.43 E-value=1.2e-12 Score=129.57 Aligned_cols=186 Identities=11% Similarity=-0.003 Sum_probs=166.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451 27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW 106 (522)
Q Consensus 27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W 106 (522)
.+.........|++ ++|+..+.+++..+|++..+|..++.++...+. +++++..++.++..+|.+..+|
T Consensus 6 ~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~ 74 (359)
T 3ieg_A 6 HLELGKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK----------SKAALPDLTKVIALKMDFTAAR 74 (359)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcchHH
Confidence 44455566677777 889999999999999999999999999999988 7999999999999999999999
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHhhcC---CCcchhhHH------------HHHHHhcCCCCHHHHHHHHHHHHhc
Q psy13451 107 FQRCYVLDHISRAPNYEKELELCNYYLELDE---RNFHCWDYR------------RYVTDRHKVAPLKELNYSTEKIEAN 171 (522)
Q Consensus 107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~---kn~~aW~~R------------~~~l~~~~~~~~~el~~~~~~i~~~ 171 (522)
...+.++... +++++++..++++++.+| .+..+|... +.+....+. +++++++++++++.+
T Consensus 75 ~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 75 LQRGHLLLKQ---GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD-YTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHH---TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHc---CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhC
Confidence 9999999999 899999999999999999 999998877 466667776 699999999999999
Q ss_pred CCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 172 FSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 172 ~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
|.+..+|..++.+.... +.++++++.+.+++..+|.+..+|.....+....++...
T Consensus 151 ~~~~~~~~~~~~~~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 151 VWDAELRELRAECFIKE------------GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp TTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred CCchHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999888 789999999999999999999999999888877776554
No 140
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=5.9e-13 Score=125.53 Aligned_cols=185 Identities=10% Similarity=0.014 Sum_probs=167.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC----
Q psy13451 27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS---- 102 (522)
Q Consensus 27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~---- 102 (522)
...........|++ ++|+..+.+++..+ ++..+|..++.++...+. +++++..++.++..+|++
T Consensus 8 ~~~~g~~~~~~~~~-~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 8 EKAEGNKFYKARQF-DEAIEHYNKAWELH-KDITYLNNRAAAEYEKGE----------YETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHhccH-HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHhCcccccch
Confidence 33445555667776 88999999999999 999999999999999988 799999999999999987
Q ss_pred ---ccchhhHHHHHHHhcCCCChHHHHHHHHHHHh--------------------------hcCCCcchhhHHHHHHHhc
Q psy13451 103 ---YGTWFQRCYVLDHISRAPNYEKELELCNYYLE--------------------------LDERNFHCWDYRRYVTDRH 153 (522)
Q Consensus 103 ---y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~--------------------------~d~kn~~aW~~R~~~l~~~ 153 (522)
..+|...+.+.... +++++++..++++++ .+|.+..+|...+.+....
T Consensus 76 ~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKL---GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence 68999999999988 888999999999998 7788889999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451 154 KVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233 (522)
Q Consensus 154 ~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~ 233 (522)
+. +++++++++++++.+|.+..+|..++.+.... +.+++++.++++++..+|++..+|.....++..
T Consensus 153 ~~-~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 153 SD-WPNAVKAYTEMIKRAPEDARGYSNRAAALAKL------------MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 219 (258)
T ss_dssp TC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cC-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 88 79999999999999999999999999999887 789999999999999999999999999999988
Q ss_pred CCCccc
Q psy13451 234 RTSPVQ 239 (522)
Q Consensus 234 ~~~~~~ 239 (522)
.++...
T Consensus 220 ~g~~~~ 225 (258)
T 3uq3_A 220 VKEYAS 225 (258)
T ss_dssp TTCHHH
T ss_pred HhhHHH
Confidence 887655
No 141
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.43 E-value=3.8e-13 Score=113.65 Aligned_cols=122 Identities=12% Similarity=0.045 Sum_probs=113.0
Q ss_pred HHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q psy13451 94 DCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFS 173 (522)
Q Consensus 94 ~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~ 173 (522)
++..+||+...+|..||..+.+. ++++++++.++++++.+|.+..+|..++.+...++. ++++++.++++|+.+|.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKK---GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME-FQRALDDCDTCIRLDSK 79 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHCHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc-HHHHHHHHHHHHHhhhh
Confidence 34568999999999999999998 999999999999999999999999999999999998 79999999999999999
Q ss_pred cchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHh
Q psy13451 174 NYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL 231 (522)
Q Consensus 174 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll 231 (522)
+..+|..++.++..+ +.++++++.+++++.++|+|..++.-.+.++
T Consensus 80 ~~~a~~~lg~~~~~~------------~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 80 FIKGYIRKAACLVAM------------REWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp CHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999998 8899999999999999999999987766554
No 142
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=2.7e-13 Score=120.62 Aligned_cols=121 Identities=25% Similarity=0.291 Sum_probs=104.3
Q ss_pred cEEEecCCCcc--cccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCC-CCC-CCCCCCcCEEEccC
Q psy13451 368 QITNLSSLQLT--SIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS-LHV-FPHLPSLESLDVSH 442 (522)
Q Consensus 368 ~~L~ls~n~l~--~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~ls~ 442 (522)
+.|++++|.++ .+|. +..+++|+.|++++|.+++. ..+..+++|+.|++++|.++. +|. +..+++|+.|++++
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 104 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence 68999999998 6887 68899999999999999854 678889999999999999998 554 34588999999999
Q ss_pred CCCCccc-------cCcccEEEcCCCCCCCCCC-----CCCCCCCCEEEccCCCCCCCCh
Q psy13451 443 NAPNIIL-------CVYFQSLKLTHCSLSSLHV-----FPHLPSLESLDVSHNAIDHIED 490 (522)
Q Consensus 443 N~l~~~~-------~~~L~~L~Ls~n~l~~~~~-----l~~~~~L~~L~Ls~N~l~~~~~ 490 (522)
|.++.++ +++|+.|++++|.++.++. +..+++|+.|++++|.+..++.
T Consensus 105 N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 105 NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 9998754 4688999999999998875 7889999999999999988763
No 143
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=1.2e-13 Score=139.05 Aligned_cols=141 Identities=18% Similarity=0.135 Sum_probs=66.6
Q ss_pred cEEEecCCCcccccC------cCCC-CcccEEEecCCCCCCcccccC----CC-CCCccEEEcCCCCCCCCC------CC
Q psy13451 368 QITNLSSLQLTSIHH------MHCF-AHCKQVDLSNNPLTNNCLRHL----TP-LVACESLKLTHCSLSSLH------VF 429 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~------~~~l-~~L~~L~Ls~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~------~~ 429 (522)
+.|++++|.++..+. +..+ ++|+.|++++|.+++..+..+ .. .++|+.|++++|.++... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 355555555554321 2222 455555555555553333222 22 135555555555555321 12
Q ss_pred CCCC-CcCEEEccCCCCCccc----------c-CcccEEEcCCCCCCCCC-----C-CCC-CCCCCEEEccCCCCCCCCh
Q psy13451 430 PHLP-SLESLDVSHNAPNIIL----------C-VYFQSLKLTHCSLSSLH-----V-FPH-LPSLESLDVSHNAIDHIED 490 (522)
Q Consensus 430 ~~l~-~L~~L~ls~N~l~~~~----------~-~~L~~L~Ls~n~l~~~~-----~-l~~-~~~L~~L~Ls~N~l~~~~~ 490 (522)
..++ +|+.|++++|.++... . ++|+.|+|++|.|++.+ . +.. .++|+.|+|++|.|++.+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 2222 5555555555554322 1 35555566655555522 1 222 2355566666665555443
Q ss_pred ----hhhcCCCCccEEEecCCC
Q psy13451 491 ----SVFAKYEACVQVILTGNP 508 (522)
Q Consensus 491 ----~~l~~l~~L~~L~L~~N~ 508 (522)
..+..+++|+.|+|++|.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHhcCCCccEEEeccCC
Confidence 223444555666665555
No 144
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.40 E-value=4.2e-12 Score=121.13 Aligned_cols=180 Identities=9% Similarity=0.030 Sum_probs=160.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccc--
Q psy13451 28 METIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGT-- 105 (522)
Q Consensus 28 ~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~-- 105 (522)
+.........|.+ ++|+..+.+++..+|++..+|..++.+....+. +++++..++.++. .|++...
T Consensus 7 ~~~a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~-~~~~~~~~~ 74 (272)
T 3u4t_A 7 FRYADFLFKNNNY-AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAK----------YDLAQKDIETYFS-KVNATKAKS 74 (272)
T ss_dssp HHHHHHHHTTTCH-HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTC----------HHHHHHHHHHHHT-TSCTTTCCH
T ss_pred HHHHHHHHHhcCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHh-ccCchhHHH
Confidence 3445555666776 889999999999999999999999999999988 7999999999999 6665555
Q ss_pred --hhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHH-
Q psy13451 106 --WFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS- 182 (522)
Q Consensus 106 --W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~- 182 (522)
|..++.+.... ++++++++.++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|..++
T Consensus 75 ~~~~~lg~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~ 150 (272)
T 3u4t_A 75 ADFEYYGKILMKK---GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN-FPLAIQYMEKQIRPTTTDPKVFYELGQ 150 (272)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHGGGCCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC-HHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 99999999998 999999999999999999999999999999999998 79999999999999999999999999
Q ss_pred HHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCC
Q psy13451 183 KLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTS 236 (522)
Q Consensus 183 ~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~ 236 (522)
.+... ..++++++.+.+++..+|++..+|.++..+....++
T Consensus 151 ~~~~~-------------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 151 AYYYN-------------KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HHHHT-------------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred HHHHH-------------HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence 54443 378999999999999999999999999888876654
No 145
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.40 E-value=7.8e-13 Score=132.39 Aligned_cols=167 Identities=15% Similarity=0.133 Sum_probs=87.2
Q ss_pred HHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccc
Q psy13451 328 IILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLR 405 (522)
Q Consensus 328 ~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~ 405 (522)
.++..+++|+.||++++.....++.. .+..+....+.+.+++|+|+.+++ |..+++|+.|++++|.++...+.
T Consensus 48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~-----~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~ 122 (350)
T 4ay9_X 48 GAFSGFGDLEKIEISQNDVLEVIEAD-----VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122 (350)
T ss_dssp TSSTTCTTCCEEEEECCTTCCEECTT-----SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred HHHcCCCCCCEEECcCCCCCCccChh-----HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCch
Confidence 34455666666666655544333221 111111111345555566666543 55666666666666666544444
Q ss_pred cCCCCCCccEEEcCC-CCCCCCC--CCCCCC-CcCEEEccCCCCCccc-----cCcccEEEcCC-CCCCCCCC--CCCCC
Q psy13451 406 HLTPLVACESLKLTH-CSLSSLH--VFPHLP-SLESLDVSHNAPNIIL-----CVYFQSLKLTH-CSLSSLHV--FPHLP 473 (522)
Q Consensus 406 ~~~~l~~L~~L~l~~-n~l~~~~--~~~~l~-~L~~L~ls~N~l~~~~-----~~~L~~L~Ls~-n~l~~~~~--l~~~~ 473 (522)
.+....++..|++.+ +.+..++ .|..+. .++.|++++|.|+.++ ..+++.|++++ |.++.++. |..++
T Consensus 123 ~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred hhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence 444445555565543 3455543 233332 4566666666666554 23456666653 45666654 56666
Q ss_pred CCCEEEccCCCCCCCChhhhcCCCCc
Q psy13451 474 SLESLDVSHNAIDHIEDSVFAKYEAC 499 (522)
Q Consensus 474 ~L~~L~Ls~N~l~~~~~~~l~~l~~L 499 (522)
+|+.|+|++|.|+.++...+.++++|
T Consensus 203 ~L~~LdLs~N~l~~lp~~~~~~L~~L 228 (350)
T 4ay9_X 203 GPVILDISRTRIHSLPSYGLENLKKL 228 (350)
T ss_dssp CCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred ccchhhcCCCCcCccChhhhccchHh
Confidence 66666666666666665444444333
No 146
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.40 E-value=2.5e-12 Score=128.43 Aligned_cols=182 Identities=11% Similarity=0.061 Sum_probs=126.3
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHH
Q psy13451 34 KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVL 113 (522)
Q Consensus 34 ~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il 113 (522)
....|.+ ++|+..+.+++..+|++..+|..++.++...+. +++++..++.++..+|++..+|...+.++
T Consensus 74 ~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 74 RLQEGDL-PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ----------ELLAISALRRCLELKPDNQTALMALAVSF 142 (368)
T ss_dssp HHHTTCH-HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3334444 556666666666666666666666666666555 45555556666666666555555555555
Q ss_pred HHhc----------------------------------------------CCCChHHHHHHHHHHHhhcCC--CcchhhH
Q psy13451 114 DHIS----------------------------------------------RAPNYEKELELCNYYLELDER--NFHCWDY 145 (522)
Q Consensus 114 ~~l~----------------------------------------------~~~~~~~el~~~~~~l~~d~k--n~~aW~~ 145 (522)
.... ..+++++++..++++++.+|. +..+|..
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 5440 003445555666666666666 5666777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhh
Q psy13451 146 RRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWF 225 (522)
Q Consensus 146 R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~ 225 (522)
.+.+....+. +++++++++++++.+|.+..+|...+.+.... +.++++++++++++..+|.+..+|.
T Consensus 223 l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~ 289 (368)
T 1fch_A 223 LGVLFNLSGE-YDKAVDCFTAALSVRPNDYLLWNKLGATLANG------------NQSEEAVAAYRRALELQPGYIRSRY 289 (368)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 7777777777 68888888999999998888888888888877 7788999999999999999988888
Q ss_pred HHHHHhccCCCccc
Q psy13451 226 YQRWLLGERTSPVQ 239 (522)
Q Consensus 226 y~~~ll~~~~~~~~ 239 (522)
.+..++...+++..
T Consensus 290 ~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 290 NLGISCINLGAHRE 303 (368)
T ss_dssp HHHHHHHHHTCHHH
T ss_pred HHHHHHHHCCCHHH
Confidence 88888877776554
No 147
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.40 E-value=3.4e-13 Score=135.06 Aligned_cols=171 Identities=13% Similarity=0.056 Sum_probs=131.1
Q ss_pred ccccccCccCcchhhchhh-hhhhhcccccCCCCCcEEEecCCCccc-ccC--cCCCCcccE-EEecCCCCCCcccccCC
Q psy13451 334 DLLKTLDPLRLNYYKDSES-KYKIETFIQTNPRANQITNLSSLQLTS-IHH--MHCFAHCKQ-VDLSNNPLTNNCLRHLT 408 (522)
Q Consensus 334 ~~L~~Ldl~~~~~~~~l~~-~~~~~~~l~~l~~~~~~L~ls~n~l~~-l~~--~~~l~~L~~-L~Ls~n~l~~~~~~~~~ 408 (522)
+++++|+++++.... ++. .+.. +..+ +.|++++|.+.+ +|. |.+++++.. +.+++|+++...|..|.
T Consensus 30 ~~l~~L~Ls~N~i~~-i~~~~f~~---l~~L----~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV-IQKGAFSG---FGDL----EKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp TTCSEEEEESCCCSE-ECTTSSTT---CTTC----CEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred CCCCEEEccCCcCCC-cCHHHHcC---CCCC----CEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence 578899988876543 222 1211 2222 699999999755 665 778888765 67778999977788899
Q ss_pred CCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccC-CCCCcccc-------CcccEEEcCCCCCCCCCC-CCCCCCCCE
Q psy13451 409 PLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSH-NAPNIILC-------VYFQSLKLTHCSLSSLHV-FPHLPSLES 477 (522)
Q Consensus 409 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~-N~l~~~~~-------~~L~~L~Ls~n~l~~~~~-l~~~~~L~~ 477 (522)
.+++|++|++++|.++.++. +....++..+++++ +.+..++. ..++.|++++|.|+.++. .....+|+.
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~ 181 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE 181 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEE
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhH
Confidence 99999999999999999874 34455677888865 56776652 357889999999999876 445568999
Q ss_pred EEcc-CCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 478 LDVS-HNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 478 L~Ls-~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
|+++ +|.++.++...|..+++|+.|+|++|+|+..
T Consensus 182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp EECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred HhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 9997 5789999988899999999999999998754
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=2.4e-12 Score=114.85 Aligned_cols=77 Identities=21% Similarity=0.207 Sum_probs=37.3
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCCCC
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHNAP 445 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N~l 445 (522)
+.+++++|+++.+|. .-.++|+.|+|++|.+++..|..|..+++|+.|+|++|+|+.++. |..+++|+.|++++|.+
T Consensus 12 ~~l~~s~n~l~~ip~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 12 TTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCc-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 355555555555554 112455555555555554444445555555555555555554431 33444444444444433
No 149
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.39 E-value=7.6e-12 Score=123.75 Aligned_cols=195 Identities=10% Similarity=0.054 Sum_probs=167.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451 31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC 110 (522)
Q Consensus 31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~ 110 (522)
.......|.+ ++|+..+.+++..+|++..+|..++.++...+. +++++..++.++..+|++..+|...+
T Consensus 127 a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la 195 (359)
T 3ieg_A 127 ALDAFDGADY-TAAITFLDKILEVCVWDAELRELRAECFIKEGE----------PRKAISDLKAASKLKSDNTEAFYKIS 195 (359)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTTCSCCHHHHHHHH
T ss_pred HHHHHHccCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4455566666 889999999999999999999999999999988 79999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHH------------HHHHHhcCCCCHHHHHHHHHHHHhcCCcchH-
Q psy13451 111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYR------------RYVTDRHKVAPLKELNYSTEKIEANFSNYSA- 177 (522)
Q Consensus 111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R------------~~~l~~~~~~~~~el~~~~~~i~~~~~n~sa- 177 (522)
.+.... +++++++..++++++.+|.+..+|.+. +.+....+. ++++++.++++++.+|.+...
T Consensus 196 ~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~ 271 (359)
T 3ieg_A 196 TLYYQL---GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDATSKYESVMKTEPSVAEYT 271 (359)
T ss_dssp HHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHc---CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCchHHH
Confidence 999999 899999999999999999999998755 555666776 799999999999999998754
Q ss_pred ---hhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEE
Q psy13451 178 ---WHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVT 254 (522)
Q Consensus 178 ---W~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 254 (522)
|...+.+.... +.++++++++++++..+|++..+|..++.++...++... |...
T Consensus 272 ~~~~~~la~~~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----------A~~~ 328 (359)
T 3ieg_A 272 VRSKERICHCFSKD------------EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE-----------AIQD 328 (359)
T ss_dssp HHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH-----------HHHH
T ss_pred HHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHH-----------HHHH
Confidence 44566666666 789999999999999999999999999999988887665 3444
Q ss_pred ecccccccc
Q psy13451 255 FNQLVDLTS 263 (522)
Q Consensus 255 ~~~~~~~~~ 263 (522)
|.++++++|
T Consensus 329 ~~~a~~~~p 337 (359)
T 3ieg_A 329 YEAAQEHNE 337 (359)
T ss_dssp HHHHHTTCT
T ss_pred HHHHHhcCC
Confidence 566655544
No 150
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=1.6e-13 Score=139.38 Aligned_cols=144 Identities=15% Similarity=0.206 Sum_probs=94.9
Q ss_pred cEEEecCCCccc-----ccC-cCCCCcccEEEecCCCCCCcccccCC----CC---------CCccEEEcCCCCCCC--C
Q psy13451 368 QITNLSSLQLTS-----IHH-MHCFAHCKQVDLSNNPLTNNCLRHLT----PL---------VACESLKLTHCSLSS--L 426 (522)
Q Consensus 368 ~~L~ls~n~l~~-----l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~l~~--~ 426 (522)
+.|++++|.++. ++. +..+++|+.|+|++|.+++..+..+. .+ ++|++|++++|.++. +
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 577777777776 443 56677777777777777543333332 22 677777777777763 2
Q ss_pred C----CCCCCCCcCEEEccCCCCCc----------c-ccCcccEEEcCCCCCCC-----CCC-CCCCCCCCEEEccCCCC
Q psy13451 427 H----VFPHLPSLESLDVSHNAPNI----------I-LCVYFQSLKLTHCSLSS-----LHV-FPHLPSLESLDVSHNAI 485 (522)
Q Consensus 427 ~----~~~~l~~L~~L~ls~N~l~~----------~-~~~~L~~L~Ls~n~l~~-----~~~-l~~~~~L~~L~Ls~N~l 485 (522)
+ .+..+++|+.|++++|.++. + .+++|+.|+|++|.+++ ++. +..+++|+.|+|++|.|
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 2 34566778888888887761 1 14677888888888742 222 66677888888888887
Q ss_pred CCCC----hhhh--cCCCCccEEEecCCCCcc
Q psy13451 486 DHIE----DSVF--AKYEACVQVILTGNPVSA 511 (522)
Q Consensus 486 ~~~~----~~~l--~~l~~L~~L~L~~N~l~~ 511 (522)
++.. +..+ +.+++|+.|+|++|.++.
T Consensus 257 ~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred chhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 7652 2344 337788888888888776
No 151
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.38 E-value=1.5e-11 Score=115.95 Aligned_cols=188 Identities=11% Similarity=-0.023 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCcc
Q psy13451 25 HNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYG 104 (522)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~ 104 (522)
.............|++ ++|++.+.+++..+|++..+|...+.++...+. +++++..++.++..+|.+..
T Consensus 38 ~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~ 106 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNT-EQAKVPLRKALEIDPSSADAHAALAVVFQTEME----------PKLADEEYRKALASDSRNAR 106 (252)
T ss_dssp HHHHHHHHHHHHTTCT-GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHCcCcHH
Confidence 3444555556667777 789999999999999999999999999999887 79999999999999999999
Q ss_pred chhhHHHHHHHhcCCCChHHHHHHHHHHHh--hcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHH
Q psy13451 105 TWFQRCYVLDHISRAPNYEKELELCNYYLE--LDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS 182 (522)
Q Consensus 105 ~W~~R~~il~~l~~~~~~~~el~~~~~~l~--~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~ 182 (522)
+|...+.++... +++++++++++++++ .+|.+..+|...+.+....+. ++++++++.++++.+|.+..+|...+
T Consensus 107 ~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~la 182 (252)
T 2ho1_A 107 VLNNYGGFLYEQ---KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK-PAQAKEYFEKSLRLNRNQPSVALEMA 182 (252)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHH---hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 999999999998 999999999999999 899999999999999999988 79999999999999999999999999
Q ss_pred HHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 183 KLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 183 ~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
.+.... +.++++++++.+++..+|.+..+|.....+....+....
T Consensus 183 ~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 183 DLLYKE------------REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT 227 (252)
T ss_dssp HHHHHT------------TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHc------------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHH
Confidence 988887 789999999999999999999999888888777766544
No 152
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.38 E-value=2e-12 Score=132.90 Aligned_cols=187 Identities=11% Similarity=-0.003 Sum_probs=163.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccc
Q psy13451 26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGT 105 (522)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~ 105 (522)
............|++ ++|+..+++++..+|++..+|..++.++...+. +++++..++.+++.+|++..+
T Consensus 28 ~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~ 96 (450)
T 2y4t_A 28 KHLELGKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK----------SKAALPDLTKVIQLKMDFTAA 96 (450)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCCCcHHH
Confidence 344445556667777 889999999999999999999999999999988 799999999999999999999
Q ss_pred hhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc---chhhHH------------HHHHHhcCCCCHHHHHHHHHHHHh
Q psy13451 106 WFQRCYVLDHISRAPNYEKELELCNYYLELDERNF---HCWDYR------------RYVTDRHKVAPLKELNYSTEKIEA 170 (522)
Q Consensus 106 W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~---~aW~~R------------~~~l~~~~~~~~~el~~~~~~i~~ 170 (522)
|...+.++... +++++++..++++++.+|.+. .+|..- +.+....+. +++++++++++++.
T Consensus 97 ~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~ 172 (450)
T 2y4t_A 97 RLQRGHLLLKQ---GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD-YTAAIAFLDKILEV 172 (450)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence 99999999998 899999999999999999988 777644 444666666 68999999999999
Q ss_pred cCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 171 NFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 171 ~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
+|.+..+|..++.++... +.++++++.+.+++..+|.+..+|..+..++...++...
T Consensus 173 ~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 173 CVWDAELRELRAECFIKE------------GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp CTTCHHHHHHHHHHHHHT------------TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCChHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999988887 778899999999999999999999999888888776554
No 153
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.38 E-value=9.4e-14 Score=138.02 Aligned_cols=174 Identities=16% Similarity=0.131 Sum_probs=119.8
Q ss_pred HhcccccccCccCcchhhc-hhhhhhhhcccccCCCCCcEEEecCCCccc-ccC-cCCCCcccEEEecCC-CCCCc-ccc
Q psy13451 331 KRFDLLKTLDPLRLNYYKD-SESKYKIETFIQTNPRANQITNLSSLQLTS-IHH-MHCFAHCKQVDLSNN-PLTNN-CLR 405 (522)
Q Consensus 331 ~~l~~L~~Ldl~~~~~~~~-l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~-l~~-~~~l~~L~~L~Ls~n-~l~~~-~~~ 405 (522)
..+++|+.|+++++..... ++..+. .++.+ +.|++++|.++. .+. +..+++|+.|++++| .+++. ++.
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~~~~~---~~~~L----~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~ 162 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLHGILS---QCSKL----QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 162 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHT---TBCCC----SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH
T ss_pred ccCCCCCEEEccCCCcCHHHHHHHHh---hCCCC----CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH
Confidence 4578888888888765433 332221 12222 588888888775 333 777888888888888 67642 455
Q ss_pred cCCCCCCccEEEcCCC-CCCC--CC-CCCCCC-CcCEEEccCCC--CC--ccc-----cCcccEEEcCCCC-CCCCC--C
Q psy13451 406 HLTPLVACESLKLTHC-SLSS--LH-VFPHLP-SLESLDVSHNA--PN--IIL-----CVYFQSLKLTHCS-LSSLH--V 468 (522)
Q Consensus 406 ~~~~l~~L~~L~l~~n-~l~~--~~-~~~~l~-~L~~L~ls~N~--l~--~~~-----~~~L~~L~Ls~n~-l~~~~--~ 468 (522)
.+..+++|+.|++++| .++. ++ .+..++ +|+.|++++|. ++ .++ +++|+.|++++|. +++.. .
T Consensus 163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 5677888888888888 7775 23 356677 88888888884 43 222 5788888888888 55432 3
Q ss_pred CCCCCCCCEEEccCCC-CCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 469 FPHLPSLESLDVSHNA-IDHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 469 l~~~~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
+..+++|+.|++++|. +.......++.+++|+.|++++| ++..
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~ 286 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG 286 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH
Confidence 7777888999998884 33333335778888899999888 5543
No 154
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.37 E-value=2.7e-12 Score=111.84 Aligned_cols=133 Identities=10% Similarity=-0.023 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN 121 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~ 121 (522)
++|+..+.+++..+|++..+|...+.+....+. +++++..++++++.+|++..+|..++.+.... ++
T Consensus 14 e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~----------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---~~ 80 (150)
T 4ga2_A 14 ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKE----------YDLAKKYICTYINVQERDPKAHRFLGLLYELE---EN 80 (150)
T ss_dssp HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TC
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---Cc
Confidence 789999999999999999999999999999988 89999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHH-HHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451 122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKEL-NYSTEKIEANFSNYSAWHYRSKLLPLL 188 (522)
Q Consensus 122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el-~~~~~~i~~~~~n~saW~~r~~ll~~l 188 (522)
+++++..++++++++|++..+|...+.++...+.. .++. .+++++++.+|.|..+|..|+.++...
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT-DGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS-SSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999884 4555 567999999999999999999887654
No 155
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=1.5e-13 Score=150.60 Aligned_cols=123 Identities=20% Similarity=0.183 Sum_probs=91.8
Q ss_pred EEecCCCcccccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC-CCCCCCCcCEEEccCCCCCc
Q psy13451 370 TNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH-VFPHLPSLESLDVSHNAPNI 447 (522)
Q Consensus 370 L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~ls~N~l~~ 447 (522)
++++.|.+...+. +..++.|+.|+|++|.+. .+|..+..+++|+.|+|++|.|+.+| .+..+++|+.|+|++|.|+.
T Consensus 206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 206 DDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS
T ss_pred ccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc
Confidence 3444444443344 778889999999999988 67777778899999999999998887 47888899999999999887
Q ss_pred cc-----cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhh
Q psy13451 448 IL-----CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVF 493 (522)
Q Consensus 448 ~~-----~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l 493 (522)
+| +.+|+.|+|++|.|+.++. ++.+++|+.|+|++|.|++.++..+
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 76 4688999999999988876 8889999999999999987665444
No 156
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.37 E-value=1.2e-12 Score=114.15 Aligned_cols=136 Identities=14% Similarity=0.077 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHH
Q psy13451 85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYS 164 (522)
Q Consensus 85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~ 164 (522)
+++++..+..++..+|++..+|.+.+.+.... ++++++++.++++++++|++..+|...+.+....+. +++++.++
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~---~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-~~~A~~~~ 88 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEA---KEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN-TDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc-hHHHHHHH
Confidence 68999999999999999999999999999999 999999999999999999999999999999999998 79999999
Q ss_pred HHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHH-HHHHHhcCCCCcchhhHHHHHhccCCC
Q psy13451 165 TEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSM-VESAVFTEPKDQSAWFYQRWLLGERTS 236 (522)
Q Consensus 165 ~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~-~~~ai~~~p~~~s~W~y~~~ll~~~~~ 236 (522)
.++++.+|.+..+|...+.++... +.++++.+. +++|+.++|+|..+|..+..++...++
T Consensus 89 ~~al~~~p~~~~~~~~la~~~~~~------------~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 89 RRSVELNPTQKDLVLKIAELLCKN------------DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHH------------CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHc------------CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999887 555666654 689999999999999999888876553
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=4.9e-12 Score=113.23 Aligned_cols=103 Identities=23% Similarity=0.278 Sum_probs=64.7
Q ss_pred cEEEecCCCcccccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCCC
Q psy13451 368 QITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHNA 444 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N~ 444 (522)
+.+++++|+++.+|. + .++|+.|+|++|.+++..|..|..+++|+.|+|++|+|+.++. |..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 467777777777766 3 2677777777777776656667777777777777777776652 4556666666655555
Q ss_pred CCccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCC
Q psy13451 445 PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHI 488 (522)
Q Consensus 445 l~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~ 488 (522)
++.++.. .+..+++|+.|+|++|.+...
T Consensus 93 l~~l~~~----------------~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 93 LKSIPRG----------------AFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCTT----------------TTTTCTTCSEEECCSSCBCTT
T ss_pred cceeCHH----------------HhccccCCCEEEeCCCCcccc
Confidence 5433211 145556666677776666644
No 158
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.36 E-value=2.8e-13 Score=136.28 Aligned_cols=187 Identities=22% Similarity=0.189 Sum_probs=137.9
Q ss_pred hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCCCcccccC--cCCC-----CcccEEEecCCC
Q psy13451 326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHH--MHCF-----AHCKQVDLSNNP 398 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n~l~~l~~--~~~l-----~~L~~L~Ls~n~ 398 (522)
.+..+...++|+.||++++.........+. ..+..++..-+.|++++|.++.... +..+ ++|+.|+|++|.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~--~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELI--QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHH--HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHH--HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 566666667799999999987665442211 1122222111699999999998533 4433 899999999999
Q ss_pred CCCcccccC----CCC-CCccEEEcCCCCCCCCCC------CCC-CCCcCEEEccCCCCCccc-----------cCcccE
Q psy13451 399 LTNNCLRHL----TPL-VACESLKLTHCSLSSLHV------FPH-LPSLESLDVSHNAPNIIL-----------CVYFQS 455 (522)
Q Consensus 399 l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~------~~~-l~~L~~L~ls~N~l~~~~-----------~~~L~~ 455 (522)
+++..+..+ ..+ ++|+.|++++|.++..+. +.. .++|+.|++++|.++... .++|+.
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 987666543 344 899999999999988652 444 369999999999998422 248999
Q ss_pred EEcCCCCCCCCCC------CCCC-CCCCEEEccCCCCCCCCh----hhhcC-CCCccEEEecCCCCccccc
Q psy13451 456 LKLTHCSLSSLHV------FPHL-PSLESLDVSHNAIDHIED----SVFAK-YEACVQVILTGNPVSADMV 514 (522)
Q Consensus 456 L~Ls~n~l~~~~~------l~~~-~~L~~L~Ls~N~l~~~~~----~~l~~-l~~L~~L~L~~N~l~~~~~ 514 (522)
|+|++|.+++.+. +..+ ++|+.|+|++|.|++... ..+.. .++|+.|+|++|+++....
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 9999999988763 3445 599999999999998542 34444 4699999999999987543
No 159
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.36 E-value=2.6e-13 Score=134.79 Aligned_cols=178 Identities=17% Similarity=0.181 Sum_probs=111.2
Q ss_pred hhHHHHhcccccccCccCcchhhchhhhhhhhcccccCCCCCcEEEecCC-Cccc--ccC-cCCCCcccEEEecCC-CCC
Q psy13451 326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSL-QLTS--IHH-MHCFAHCKQVDLSNN-PLT 400 (522)
Q Consensus 326 ~~~~l~~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~ls~n-~l~~--l~~-~~~l~~L~~L~Ls~n-~l~ 400 (522)
.+..+..+++|+.|++.++.........+.. ++.+ +.|++++| .++. ++. +..+++|+.|++++| .++
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~---~~~L----~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAK---NSNL----VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTT---CTTC----SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhc---CCCC----CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 4556777888888888777655444433221 2222 57888888 6774 555 667778888888888 776
Q ss_pred Cc-ccccCCCCC-CccEEEcCCCC--CCC--CC-CCCCCCCcCEEEccCCC-CCcc------ccCcccEEEcCCCC-CCC
Q psy13451 401 NN-CLRHLTPLV-ACESLKLTHCS--LSS--LH-VFPHLPSLESLDVSHNA-PNII------LCVYFQSLKLTHCS-LSS 465 (522)
Q Consensus 401 ~~-~~~~~~~l~-~L~~L~l~~n~--l~~--~~-~~~~l~~L~~L~ls~N~-l~~~------~~~~L~~L~Ls~n~-l~~ 465 (522)
+. ++..+..++ +|+.|++++|. ++. ++ .+..+++|+.|++++|. ++.. ..++|+.|++++|. ++.
T Consensus 183 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 43 455566777 88888888883 432 33 34567788888888887 4421 14677888888874 333
Q ss_pred CC--CCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccc
Q psy13451 466 LH--VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 466 ~~--~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
.. .+..+++|+.|++++| ++......+. ..+..|++++|.++...
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIA 309 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTT
T ss_pred HHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCcccc
Confidence 21 2566778888888887 4443322222 12444557777776544
No 160
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.34 E-value=4.4e-12 Score=124.00 Aligned_cols=180 Identities=13% Similarity=0.032 Sum_probs=101.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451 31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC 110 (522)
Q Consensus 31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~ 110 (522)
.......|++ ++|+..+.+++..+|++..+|..++.++...+. +++++..++.++..+|++..+|...+
T Consensus 28 a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la 96 (327)
T 3cv0_A 28 GLSMLKLANL-AEAALAFEAVCQAAPEREEAWRSLGLTQAENEK----------DGLAIIALNHARMLDPKDIAVHAALA 96 (327)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 3344444544 556666666666666666666666666666655 46666666666666666666666666
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHH--------------HH-HHHhcCCCCHHHHHHHHHHHHhcCCcc
Q psy13451 111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYR--------------RY-VTDRHKVAPLKELNYSTEKIEANFSNY 175 (522)
Q Consensus 111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R--------------~~-~l~~~~~~~~~el~~~~~~i~~~~~n~ 175 (522)
.+.... +++++++..++++++.+|.+..+|... +- +....+. +++++++++++++.+|.+.
T Consensus 97 ~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~ 172 (327)
T 3cv0_A 97 VSHTNE---HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE-YRECRTLLHAALEMNPNDA 172 (327)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHH-HHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHc---CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc-HHHHHHHHHHHHhhCCCCH
Confidence 666555 556666666666666666665555444 21 1222222 3455555566666666655
Q ss_pred hHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCc
Q psy13451 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSP 237 (522)
Q Consensus 176 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~ 237 (522)
.+|...+.+.... +.++++++++.+++..+|++..+|.....++...++.
T Consensus 173 ~~~~~la~~~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 173 QLHASLGVLYNLS------------NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp HHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHh------------ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 5555555555544 4555566666666666665555555555555554443
No 161
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.34 E-value=5.8e-11 Score=109.22 Aligned_cols=185 Identities=11% Similarity=0.034 Sum_probs=159.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchh
Q psy13451 28 METIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWF 107 (522)
Q Consensus 28 ~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~ 107 (522)
..........|++ ++|+..+.+++..+|++..+|...+.++...+. +++++..++.++..+|++..+|.
T Consensus 12 ~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~ 80 (225)
T 2vq2_A 12 TQLAMEYMRGQDY-RQATASIEDALKSDPKNELAWLVRAEIYQYLKV----------NDKAQESFRQALSIKPDSAEINN 80 (225)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhhH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCChHHHH
Confidence 3344455566666 889999999999999999999999999999887 79999999999999999999999
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHh--hcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHh
Q psy13451 108 QRCYVLDHISRAPNYEKELELCNYYLE--LDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLL 185 (522)
Q Consensus 108 ~R~~il~~l~~~~~~~~el~~~~~~l~--~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll 185 (522)
..+.++... .+++++++..++++++ .+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+.
T Consensus 81 ~l~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 81 NYGWFLCGR--LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ-FGLAEAYLKRSLAAQPQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHTT--TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 988877543 1789999999999999 777778999999999999988 79999999999999999999999999988
Q ss_pred chhCCCCCCCCccchhHHHHHHHHHHHHHhcCC-CCcchhhHHHHHhccCCCcc
Q psy13451 186 PLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEP-KDQSAWFYQRWLLGERTSPV 238 (522)
Q Consensus 186 ~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p-~~~s~W~y~~~ll~~~~~~~ 238 (522)
... +.++++++.+++++..+| .+..+|.....+....+...
T Consensus 158 ~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (225)
T 2vq2_A 158 MLA------------GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ 199 (225)
T ss_dssp HHH------------TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHc------------CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence 887 789999999999999999 88888866665555555443
No 162
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=1.4e-12 Score=136.03 Aligned_cols=192 Identities=11% Similarity=0.038 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHH-HHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCC
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELV-DRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAP 120 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~-~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~ 120 (522)
++++.....++...|+...+|..++.++...+. + ++++..++++++.+|++..+|+..+.++... +
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~----------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---g 151 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPD----------YSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK---G 151 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSS----------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---T
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccc----------cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---C
Confidence 567888888899999999999999999999887 7 9999999999999999999999999999999 9
Q ss_pred ChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc---------CCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCC
Q psy13451 121 NYEKELELCNYYLELDERNFHCWDYRRYVTDRH---------KVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPD 191 (522)
Q Consensus 121 ~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~---------~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~ 191 (522)
++++++++++++++.+|. ..+|...+.++... +. +++++++++++++.+|.+..+|+..+.++....-.
T Consensus 152 ~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 152 DVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH-VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp CHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 69999999999998 77 68999999999999999999999999988765111
Q ss_pred CCCCCccchhHHHHHHHHHHHHHhcCC---CCcchhhHHHHHhccCCCcccceecccCCCceEEEEecccccccc
Q psy13451 192 PNNHLPIEQDKYVNEFSMVESAVFTEP---KDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTS 263 (522)
Q Consensus 192 ~~~~~~~~~~~~~~el~~~~~ai~~~p---~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (522)
.. ...+.++++++++.+|+..+| .+..+|+.++.++...+++.. |...|.+++.++|
T Consensus 230 ~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~-----------A~~~~~~al~l~p 289 (474)
T 4abn_A 230 TG----QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGE-----------ALEGFSQAAALDP 289 (474)
T ss_dssp TT----CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHHHCT
T ss_pred hc----cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHH-----------HHHHHHHHHHhCC
Confidence 00 023789999999999999999 999999999999998887765 4445666665543
No 163
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=7.5e-13 Score=118.78 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=101.5
Q ss_pred cEEEecCCCcccccCcCCCC-cccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC-C-CCCCCCcCEEEccCCC
Q psy13451 368 QITNLSSLQLTSIHHMHCFA-HCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH-V-FPHLPSLESLDVSHNA 444 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~ls~N~ 444 (522)
+.|++++|.++.+|.+..+. +|+.|++++|.+++. ..|..+++|+.|++++|.++.++ . +..+++|+.|++++|.
T Consensus 22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 99 (176)
T 1a9n_A 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99 (176)
T ss_dssp EEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC
T ss_pred eEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc
Confidence 68999999999988765555 999999999999854 67889999999999999999886 3 4788999999999999
Q ss_pred CCccc-------cCcccEEEcCCCCCCCCCC-----CCCCCCCCEEEccCCCCCCC
Q psy13451 445 PNIIL-------CVYFQSLKLTHCSLSSLHV-----FPHLPSLESLDVSHNAIDHI 488 (522)
Q Consensus 445 l~~~~-------~~~L~~L~Ls~n~l~~~~~-----l~~~~~L~~L~Ls~N~l~~~ 488 (522)
++.++ +++|+.|++++|.++.++. +..+++|+.||+++|.+...
T Consensus 100 i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 100 LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 87654 4678999999999988876 67889999999999987653
No 164
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.34 E-value=8.8e-12 Score=128.13 Aligned_cols=182 Identities=11% Similarity=0.042 Sum_probs=155.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451 31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC 110 (522)
Q Consensus 31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~ 110 (522)
.......|.+ ++|+..+.+++.++|++..+|..++.++...+. +++++..++.+++.+|++..+|...+
T Consensus 150 a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~ 218 (450)
T 2y4t_A 150 ALNAFGSGDY-TAAIAFLDKILEVCVWDAELRELRAECFIKEGE----------PRKAISDLKAASKLKNDNTEAFYKIS 218 (450)
T ss_dssp HHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------GGGGHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3344555665 789999999999999999999999999999887 58899999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHH------------HHHHHhcCCCCHHHHHHHHHHHHhcCCcc---
Q psy13451 111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYR------------RYVTDRHKVAPLKELNYSTEKIEANFSNY--- 175 (522)
Q Consensus 111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R------------~~~l~~~~~~~~~el~~~~~~i~~~~~n~--- 175 (522)
.++... +++++++..++++++.+|.+..+|... +.+....+. +++++++++++++.+|.+.
T Consensus 219 ~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~ 294 (450)
T 2y4t_A 219 TLYYQL---GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDATSKYESVMKTEPSIAEYT 294 (450)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHc---CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCcchHHH
Confidence 999888 889999999999999999998888766 667777777 6899999999999999884
Q ss_pred -hHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 176 -SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 176 -saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
.+|..++.++... +.++++++++++++..+|++..+|..+..++...++...
T Consensus 295 ~~~~~~l~~~~~~~------------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 347 (450)
T 2y4t_A 295 VRSKERICHCFSKD------------EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE 347 (450)
T ss_dssp HHHHHHHHHHHHTT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 4677777777776 788999999999999999999999999988888777655
No 165
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.34 E-value=3.5e-11 Score=120.00 Aligned_cols=191 Identities=10% Similarity=0.006 Sum_probs=164.0
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHH--------------------------------
Q psy13451 32 FEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEE-------------------------------- 79 (522)
Q Consensus 32 ~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~-------------------------------- 79 (522)
......|.+ ++|+..+.+++.++|++..+|...+.++...+......
T Consensus 106 ~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 106 TTQAENEQE-LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred HHHHHCcCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHH
Confidence 334455655 78999999999999999999999999988775521000
Q ss_pred -------HHHHHHHHHHHHHHHHHHhCCC--CccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q psy13451 80 -------ELHELVDRELKLTKDCLLAQPK--SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVT 150 (522)
Q Consensus 80 -------~~~~~~~~eL~~~~~~l~~~pk--~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l 150 (522)
-...-+++++..++.++..+|. ...+|...+.+.... +++++++..++++++.+|.+..+|...+.+.
T Consensus 185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 261 (368)
T 1fch_A 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS---GEYDKAVDCFTAALSVRPNDYLLWNKLGATL 261 (368)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 0112356778888888888888 778888889988888 8999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCC----------
Q psy13451 151 DRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKD---------- 220 (522)
Q Consensus 151 ~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~---------- 220 (522)
...+. +++++++++++++.+|.+..+|...+.+.... +.++++++++.+++..+|++
T Consensus 262 ~~~g~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 262 ANGNQ-SEEAVAAYRRALELQPGYIRSRYNLGISCINL------------GAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp HHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 99998 79999999999999999999999999999988 88999999999999999999
Q ss_pred -cchhhHHHHHhccCCCccc
Q psy13451 221 -QSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 221 -~s~W~y~~~ll~~~~~~~~ 239 (522)
..+|..++.++...++...
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGG
T ss_pred hhHHHHHHHHHHHHhCChHh
Confidence 7899999999988877655
No 166
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.3e-11 Score=116.23 Aligned_cols=179 Identities=8% Similarity=0.050 Sum_probs=151.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHhhccccHHHHH-------------------HH
Q psy13451 31 IFEKRKNQEYDDEALSLTSEVLRNIPDI-------NSLWNYRKEVLLHMKATLAEEELH-------------------EL 84 (522)
Q Consensus 31 ~~~~~~~~~~~~eal~~~~~~l~~np~~-------~t~wn~R~~~l~~l~~~~~~~~~~-------------------~~ 84 (522)
.......|++ ++|+..+.+++.++|++ ..+|...+.++...+.. ++.. .-
T Consensus 45 ~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~~~ 120 (258)
T 3uq3_A 45 AAAEYEKGEY-ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL---KKTIEYYQKSLTEHRTADILTKLRN 120 (258)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHcccH-HHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH---HHHHHHHHHHHhcCchhHHHHHHhH
Confidence 3444555665 88999999999999987 79999999999988762 1111 11
Q ss_pred HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHH
Q psy13451 85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYS 164 (522)
Q Consensus 85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~ 164 (522)
+++++..++.++..+|....+|..++.++... +++++++..++++++.+|.+..+|...+.+....+. ++++++++
T Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~ 196 (258)
T 3uq3_A 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTK---SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC-HHHHHHHH
Confidence 23334445555558899999999999999998 999999999999999999999999999999999998 79999999
Q ss_pred HHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcC------CCCcchhhHHHH
Q psy13451 165 TEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTE------PKDQSAWFYQRW 229 (522)
Q Consensus 165 ~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~------p~~~s~W~y~~~ 229 (522)
+++++.+|.+..+|...+.++... +.++++++++++++..+ |.+..+|.....
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIAV------------KEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 999999999999999999999988 78999999999999999 998888765543
No 167
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=1.4e-11 Score=114.79 Aligned_cols=154 Identities=11% Similarity=-0.002 Sum_probs=142.2
Q ss_pred CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCC-CCccchhhHHHHHHHhcCCCChHHHHHHHHHHHh
Q psy13451 56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQP-KSYGTWFQRCYVLDHISRAPNYEKELELCNYYLE 134 (522)
Q Consensus 56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-k~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~ 134 (522)
|.+..+|..++.++...+. +++++..++.++..+| ++..+|+.++.+.... +++++++..++++++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~ 70 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKN----------YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI---KKYKEAADYFDIAIK 70 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh---hcHHHHHHHHHHHHH
Confidence 4456899999999999888 7999999999999999 9999999999999999 999999999999999
Q ss_pred hcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc-------hHhhHHHHHhchhCCCCCCCCccchhHHHHHH
Q psy13451 135 LDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY-------SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEF 207 (522)
Q Consensus 135 ~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~-------saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el 207 (522)
.+|.+..+|..++.+....+. ++++++.++++++.+|.|. .+|..++.+.... +.+++++
T Consensus 71 ~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~------------~~~~~A~ 137 (228)
T 4i17_A 71 KNYNLANAYIGKSAAYRDMKN-NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA------------GNIEKAE 137 (228)
T ss_dssp TTCSHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT------------TCHHHHH
T ss_pred hCcchHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh------------ccHHHHH
Confidence 999999999999999999998 7999999999999999999 6799999888877 8899999
Q ss_pred HHHHHHHhcCCC--CcchhhHHHHHhccCC
Q psy13451 208 SMVESAVFTEPK--DQSAWFYQRWLLGERT 235 (522)
Q Consensus 208 ~~~~~ai~~~p~--~~s~W~y~~~ll~~~~ 235 (522)
+++.+++..+|+ +..+|..++.+....+
T Consensus 138 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~~ 167 (228)
T 4i17_A 138 ENYKHATDVTSKKWKTDALYSLGVLFYNNG 167 (228)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence 999999999999 8899988888775443
No 168
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=1.1e-12 Score=114.05 Aligned_cols=113 Identities=25% Similarity=0.287 Sum_probs=97.2
Q ss_pred cEEEecCCCcc--cccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCC-CCC-CCCCCCcCEEEccC
Q psy13451 368 QITNLSSLQLT--SIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS-LHV-FPHLPSLESLDVSH 442 (522)
Q Consensus 368 ~~L~ls~n~l~--~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~ls~ 442 (522)
+.|++++|.++ .+|. +..+++|+.|++++|.+++. ..+..+++|+.|++++|.++. +|. +..+++|+.|++++
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~ 97 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence 68999999998 6777 78899999999999999855 678899999999999999998 554 45688999999999
Q ss_pred CCCCccc-------cCcccEEEcCCCCCCCCCC-----CCCCCCCCEEEccC
Q psy13451 443 NAPNIIL-------CVYFQSLKLTHCSLSSLHV-----FPHLPSLESLDVSH 482 (522)
Q Consensus 443 N~l~~~~-------~~~L~~L~Ls~n~l~~~~~-----l~~~~~L~~L~Ls~ 482 (522)
|.++.++ +++|+.|++++|.+++.++ +..+++|+.|++++
T Consensus 98 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 98 NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9998753 4789999999999998875 77789999999864
No 169
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.33 E-value=1.5e-11 Score=131.31 Aligned_cols=180 Identities=9% Similarity=-0.041 Sum_probs=163.9
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHH
Q psy13451 33 EKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYV 112 (522)
Q Consensus 33 ~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~i 112 (522)
...+.|.+ ++|++.+++++.++|++..+|+....++...+. +++++..++.++..+|++..+|...+.+
T Consensus 382 ~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 382 YYLCVNKI-SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE----------HDQAISAYTTAARLFQGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHTTTTCSHHHHHHHHH
T ss_pred HHHHhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34445555 889999999999999999999999999999888 7999999999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHh------cCCc-chHhhHHHHHh
Q psy13451 113 LDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEA------NFSN-YSAWHYRSKLL 185 (522)
Q Consensus 113 l~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~------~~~n-~saW~~r~~ll 185 (522)
..+. ++++++++.++++++.+|++..+|...+.++...+. +++++++++++++. +|.+ ..+|...+.++
T Consensus 451 ~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 451 HMQL---GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD-MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHH---TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 9999 899999999999999999999999999999999988 79999999999998 6666 58899999998
Q ss_pred chhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 186 PLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 186 ~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
... +.++++++.+++++..+|++..+|..+..++...++...
T Consensus 527 ~~~------------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 527 RKL------------KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp HHT------------TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHh------------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 887 889999999999999999999999999999988887665
No 170
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=3.3e-11 Score=107.02 Aligned_cols=167 Identities=11% Similarity=-0.017 Sum_probs=153.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451 31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC 110 (522)
Q Consensus 31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~ 110 (522)
.......|++ ++|+..+.+++..+|++..+|...+.++...+. +++++..++.+++.+|.+..+|...+
T Consensus 15 ~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~a 83 (186)
T 3as5_A 15 GISHAKAGRY-SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA----------VDRGTELLERSLADAPDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHTCH-HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhcCH-HHHHHHHHHHHHhCccChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3444555666 889999999999999999999999999999887 79999999999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCC
Q psy13451 111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYP 190 (522)
Q Consensus 111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~ 190 (522)
.++... ++++++++.++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+....
T Consensus 84 ~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 157 (186)
T 3as5_A 84 LTYVQV---QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR-FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM-- 157 (186)
T ss_dssp HHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred HHHHHh---cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHc--
Confidence 999999 899999999999999999999999999999999988 79999999999999999999999999988887
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHhcCCCCcchh
Q psy13451 191 DPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAW 224 (522)
Q Consensus 191 ~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W 224 (522)
+.++++++++++++..+|++....
T Consensus 158 ----------~~~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 158 ----------GRHEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp ----------TCHHHHHHHHHHHHHHHHCCCGGG
T ss_pred ----------CCHHHHHHHHHHHHHcCCCchhhH
Confidence 789999999999999999887543
No 171
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.32 E-value=7.4e-12 Score=122.39 Aligned_cols=181 Identities=9% Similarity=-0.020 Sum_probs=158.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhH--
Q psy13451 32 FEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQR-- 109 (522)
Q Consensus 32 ~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R-- 109 (522)
......|++ ++|+..+.+++.++|++..+|...+.++...+. +++++..++.++..+|++..+|...
T Consensus 63 ~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (327)
T 3cv0_A 63 LTQAENEKD-GLAIIALNHARMLDPKDIAVHAALAVSHTNEHN----------ANAALASLRAWLLSQPQYEQLGSVNLQ 131 (327)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHTSTTTTTC------
T ss_pred HHHHHcCCH-HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCccHHHHHHHhH
Confidence 334455655 889999999999999999999999999999888 7999999999999999999999887
Q ss_pred ------------HH-HHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcch
Q psy13451 110 ------------CY-VLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176 (522)
Q Consensus 110 ------------~~-il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~s 176 (522)
+. ++... +++++++..++++++.+|.+..+|...+.+....+. ++++++++.++++.+|.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~ 207 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAP---NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN-YDSAAANLRRAVELRPDDAQ 207 (327)
T ss_dssp --------------CCTTSH---HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhHHHHHc---ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCcHH
Confidence 33 33344 778999999999999999999999999999999988 79999999999999999999
Q ss_pred HhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 177 AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 177 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
+|...+.+.... +.++++++++.+++..+|.+..+|.....+....++...
T Consensus 208 ~~~~l~~~~~~~------------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 208 LWNKLGATLANG------------NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHc------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 999999999887 789999999999999999999999999999888877655
No 172
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=1.6e-12 Score=142.45 Aligned_cols=143 Identities=14% Similarity=0.072 Sum_probs=94.2
Q ss_pred cEEEecCCCcccccC-cCCCC-----cccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC-CCCCCCCcCEEEc
Q psy13451 368 QITNLSSLQLTSIHH-MHCFA-----HCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH-VFPHLPSLESLDV 440 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~-~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l 440 (522)
+.|++.+|.+...+. +.... .+..++++.|.+. ..+..|..++.|+.|+|++|.+..++ .+..+++|+.|+|
T Consensus 176 ~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~L 254 (727)
T 4b8c_D 176 PKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYL 254 (727)
T ss_dssp -----------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBC
T ss_pred ceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEe
Confidence 456666666666443 11111 2333445556655 56788999999999999999999987 5678999999999
Q ss_pred cCCCCCccc-----cCcccEEEcCCCCCCCCCC-CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 441 SHNAPNIIL-----CVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 441 s~N~l~~~~-----~~~L~~L~Ls~n~l~~~~~-l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
++|.|+.+| +++|+.|+|++|.|+.++. ++.+++|+.|+|++|.|+.+|. .|+.+++|+.|+|++|+|++.
T Consensus 255 s~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 255 NGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp TTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSH
T ss_pred eCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCC
Confidence 999999776 4789999999999998876 8899999999999999998875 499999999999999999854
No 173
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=3.6e-11 Score=117.83 Aligned_cols=179 Identities=9% Similarity=-0.007 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-------hccccHHHHHHHHHHHHHHHHHHHH-hCCCCccchhhHHHHH
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHM-------KATLAEEELHELVDRELKLTKDCLL-AQPKSYGTWFQRCYVL 113 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l-------~~~~~~~~~~~~~~~eL~~~~~~l~-~~pk~y~~W~~R~~il 113 (522)
++|+..+++++..+|.+..+|..++.++... +.. +.....+++++..++++++ .+|++..+|...+.++
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~---~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM---NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCC---HHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccch---hhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 6899999999999999999999999998754 321 1112224899999999999 7999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhhcCCCcc-hhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhch-hCCC
Q psy13451 114 DHISRAPNYEKELELCNYYLELDERNFH-CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPL-LYPD 191 (522)
Q Consensus 114 ~~l~~~~~~~~el~~~~~~l~~d~kn~~-aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~-l~~~ 191 (522)
... ++++++.+.++++++.+|.+.. +|...+.+....+. ++++.+.++++++.+|.+..+|.....+-.. .
T Consensus 110 ~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~--- 182 (308)
T 2ond_A 110 ESR---MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAALMEYYCS--- 182 (308)
T ss_dssp HHT---TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTS---
T ss_pred Hhc---CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc---
Confidence 998 8999999999999999999997 99999999988887 6899999999999999999888755544321 2
Q ss_pred CCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 192 PNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 192 ~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
+.++++...+++++..+|++..+|....-++...++...
T Consensus 183 ---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~ 221 (308)
T 2ond_A 183 ---------KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 221 (308)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH
T ss_pred ---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 578999999999999999999999888888777766554
No 174
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=4.7e-15 Score=135.98 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=115.2
Q ss_pred cEEEecCC--CcccccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC-CCCCCCcCEEEccCC
Q psy13451 368 QITNLSSL--QLTSIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV-FPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n--~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ls~N 443 (522)
+...++++ .++.+|. +..+++|+.|++++|.+++ +| .+..+++|+.|++++|.++.+|. +..+++|+.|++++|
T Consensus 26 ~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp SEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred heeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 34455444 4555665 7889999999999999985 66 78889999999999999998875 455689999999999
Q ss_pred CCCccc----cCcccEEEcCCCCCCCCCC---CCCCCCCCEEEccCCCCCCCCh----------hhhcCCCCccEEEecC
Q psy13451 444 APNIIL----CVYFQSLKLTHCSLSSLHV---FPHLPSLESLDVSHNAIDHIED----------SVFAKYEACVQVILTG 506 (522)
Q Consensus 444 ~l~~~~----~~~L~~L~Ls~n~l~~~~~---l~~~~~L~~L~Ls~N~l~~~~~----------~~l~~l~~L~~L~L~~ 506 (522)
.++.++ +++|+.|++++|.+++++. +..+++|+.|++++|.+++..+ ..+..+++|+.|+ +
T Consensus 104 ~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~ 181 (198)
T 1ds9_A 104 QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--G 181 (198)
T ss_dssp ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--C
T ss_pred cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--C
Confidence 998875 5789999999999998653 7889999999999999876533 2478899999886 7
Q ss_pred CCCcccc
Q psy13451 507 NPVSADM 513 (522)
Q Consensus 507 N~l~~~~ 513 (522)
|+++...
T Consensus 182 ~~i~~~e 188 (198)
T 1ds9_A 182 MPVDVDE 188 (198)
T ss_dssp GGGTTTT
T ss_pred cccCHHH
Confidence 8876543
No 175
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.28 E-value=1.4e-10 Score=109.14 Aligned_cols=167 Identities=10% Similarity=-0.060 Sum_probs=153.8
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH--hCCCCccchhhHHH
Q psy13451 34 KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLL--AQPKSYGTWFQRCY 111 (522)
Q Consensus 34 ~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pk~y~~W~~R~~ 111 (522)
....|++ ++|+..+.+++..+|++..+|...+.++...+. +++++..++.++. .+|.+..+|...+.
T Consensus 81 ~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 81 FQTEMEP-KLADEEYRKALASDSRNARVLNNYGGFLYEQKR----------YEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHHcCCH-HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 3444555 889999999999999999999999999999887 7999999999999 89999999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCC
Q psy13451 112 VLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPD 191 (522)
Q Consensus 112 il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~ 191 (522)
++... +++++++..++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+....
T Consensus 150 ~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 222 (252)
T 2ho1_A 150 VSLQM---KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE-YVPARQYYDLFAQGGGQNARSLLLGIRLAKVF--- 222 (252)
T ss_dssp HHHHT---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHT---
T ss_pred HHHHc---CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc---
Confidence 99998 899999999999999999999999999999999988 79999999999999999999999988888877
Q ss_pred CCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHH
Q psy13451 192 PNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQ 227 (522)
Q Consensus 192 ~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~ 227 (522)
+.++++.+++.+++..+|++..++.+.
T Consensus 223 ---------g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 223 ---------EDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp ---------TCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred ---------cCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 789999999999999999998887654
No 176
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.28 E-value=4.5e-11 Score=113.88 Aligned_cols=183 Identities=9% Similarity=0.016 Sum_probs=102.5
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451 35 RKNQEYDDEALSLTSEVLRNIPDI----NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC 110 (522)
Q Consensus 35 ~~~~~~~~eal~~~~~~l~~np~~----~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~ 110 (522)
...|++ ++|++.+.+++. .|++ ..+|..++.++...+. +++++..++.++..+|.+..+|...+
T Consensus 48 ~~~~~~-~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~l~ 115 (272)
T 3u4t_A 48 YELAKY-DLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQ----------DSLAIQQYQAAVDRDTTRLDMYGQIG 115 (272)
T ss_dssp HHTTCH-HHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred HHHhhH-HHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHccc----------HHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 334444 555555665555 2222 2235555555555555 45556666666666666666666666
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHH-HHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhC
Q psy13451 111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRR-YVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLY 189 (522)
Q Consensus 111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~-~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~ 189 (522)
.+.... +++++++..++++++.+|.+..+|...+ .+.... . ++++++.++++++.+|.+..+|..++.+...+.
T Consensus 116 ~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~-~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 190 (272)
T 3u4t_A 116 SYFYNK---GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-E-YVKADSSFVKVLELKPNIYIGYLWRARANAAQD 190 (272)
T ss_dssp HHHHHT---TCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-C-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc---cCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 555555 5555666666666666666666665555 333332 2 455555556666666665555555555555543
Q ss_pred CCC---CCC------------Cc------------------cchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccC
Q psy13451 190 PDP---NNH------------LP------------------IEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER 234 (522)
Q Consensus 190 ~~~---~~~------------~~------------------~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~ 234 (522)
... .+. .+ ...+.++++++++++++..+|+|..+|--.+.+....
T Consensus 191 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp TTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred cchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 311 000 00 0116788999999999999999999998777666544
No 177
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.27 E-value=1.7e-11 Score=106.92 Aligned_cols=128 Identities=7% Similarity=-0.018 Sum_probs=115.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451 27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW 106 (522)
Q Consensus 27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W 106 (522)
+...+......|.. +.+++.++|++..+|..++.++...++ +++++..++.++..+|++..+|
T Consensus 11 ~~~~l~~~~~~~~~-------l~~al~l~p~~~~~~~~lg~~~~~~g~----------~~eA~~~~~~al~~~P~~~~~~ 73 (151)
T 3gyz_A 11 ISTAVIDAINSGAT-------LKDINAIPDDMMDDIYSYAYDFYNKGR----------IEEAEVFFRFLCIYDFYNVDYI 73 (151)
T ss_dssp HHHHHHHHHHTSCC-------TGGGCCSCHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHCCCC-------HHHHhCCCHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHH
Confidence 33444444555544 567788999999999999999999998 8999999999999999999999
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc
Q psy13451 107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175 (522)
Q Consensus 107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~ 175 (522)
+.++.++..+ +++++++++++++++++|.+..+|.+.+.++..++. +++++++++++++.+|..-
T Consensus 74 ~~lg~~~~~~---g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~-~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 74 MGLAAIYQIK---EQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA-PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHH---ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCHH
Confidence 9999999999 999999999999999999999999999999999998 7999999999999998753
No 178
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.27 E-value=1.6e-10 Score=106.15 Aligned_cols=169 Identities=9% Similarity=-0.080 Sum_probs=150.8
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHH--hCCCCccchhhH
Q psy13451 33 EKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHM-KATLAEEELHELVDRELKLTKDCLL--AQPKSYGTWFQR 109 (522)
Q Consensus 33 ~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l-~~~~~~~~~~~~~~~eL~~~~~~l~--~~pk~y~~W~~R 109 (522)
.....|++ ++|++.+.+++..+|++..+|...+.++... +. +++++..++.++. .+|....+|...
T Consensus 51 ~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l 119 (225)
T 2vq2_A 51 IYQYLKVN-DKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR----------PAESMAYFDKALADPTYPTPYIANLNK 119 (225)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC----------HHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred HHHHcCCh-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence 34455555 8899999999999999999999999999998 87 7999999999999 777778999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CcchHhhHHHHHhchh
Q psy13451 110 CYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANF-SNYSAWHYRSKLLPLL 188 (522)
Q Consensus 110 ~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~-~n~saW~~r~~ll~~l 188 (522)
+.+.... +++++++..++++++.+|.+..+|...+.+....+. +++++++++++++.+| .+..+|.....+....
T Consensus 120 ~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (225)
T 2vq2_A 120 GICSAKQ---GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ-LGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL 195 (225)
T ss_dssp HHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHc---CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 9999998 999999999999999999999999999999999988 7999999999999999 8888887666666655
Q ss_pred CCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHH
Q psy13451 189 YPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQR 228 (522)
Q Consensus 189 ~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~ 228 (522)
+..+++..++..+...+|++..++.+..
T Consensus 196 ------------~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 196 ------------GNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp ------------TCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred ------------CcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 6788899999999999999998887654
No 179
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.27 E-value=1.3e-10 Score=123.96 Aligned_cols=173 Identities=8% Similarity=-0.037 Sum_probs=158.8
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHH
Q psy13451 33 EKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYV 112 (522)
Q Consensus 33 ~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~i 112 (522)
.....|.+ ++|++.+++++..+|++..+|+..+.++...+. +++++..++.++..+|++..+|...+.+
T Consensus 416 ~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 416 SFAIEGEH-DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN----------ILLANEYLQSSYALFQYDPLLLNELGVV 484 (597)
T ss_dssp HHHHHTCH-HHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHcCCH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 33444555 889999999999999999999999999999888 7999999999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHhh------cCCC-cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHh
Q psy13451 113 LDHISRAPNYEKELELCNYYLEL------DERN-FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLL 185 (522)
Q Consensus 113 l~~l~~~~~~~~el~~~~~~l~~------d~kn-~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll 185 (522)
+.+. +++++++++++++++. +|.+ ..+|...+.+....+. ++++++.++++++.+|.+..+|...+.++
T Consensus 485 ~~~~---g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 485 AFNK---SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM-YDAAIDALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHT---TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHh---CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9998 9999999999999998 6666 5799999999999998 79999999999999999999999999999
Q ss_pred chhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhc
Q psy13451 186 PLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232 (522)
Q Consensus 186 ~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~ 232 (522)
... +.++++.+++++++..+|+|..+|..+..++.
T Consensus 561 ~~~------------g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 561 LHK------------KIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHh------------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 888 88999999999999999999999988777653
No 180
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=3.1e-11 Score=109.88 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=87.3
Q ss_pred cEEEecCCCcccccC-cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCC
Q psy13451 368 QITNLSSLQLTSIHH-MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA 444 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~ 444 (522)
+.|++++|.|+.+|. +..+++|+.|+|++|.+++..+..|.++++|+.|+|++|.|+.++ .|..+++|+.|++++|.
T Consensus 34 ~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp CEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC
Confidence 799999999999987 899999999999999999877788999999999999999999986 48888999999998888
Q ss_pred CCccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCC
Q psy13451 445 PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486 (522)
Q Consensus 445 l~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~ 486 (522)
++.++.. .+..+++|+.|+|++|.+.
T Consensus 114 l~~~~~~----------------~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 114 ISVVPEG----------------AFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTT----------------TTTTCTTCCEEECCSSCEE
T ss_pred CCeeChh----------------hhhcCccccEEEeCCCCee
Confidence 8765432 1455667777777777764
No 181
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.26 E-value=7.9e-13 Score=137.28 Aligned_cols=146 Identities=15% Similarity=0.076 Sum_probs=90.2
Q ss_pred cEEEecCCCcccc------cC-cCCCCcccEEEecCCCCCCc----ccccCCCCCCccEEEcCCCCCCCCC------C-C
Q psy13451 368 QITNLSSLQLTSI------HH-MHCFAHCKQVDLSNNPLTNN----CLRHLTPLVACESLKLTHCSLSSLH------V-F 429 (522)
Q Consensus 368 ~~L~ls~n~l~~l------~~-~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~------~-~ 429 (522)
+.|++++|.++.. +. +..+++|+.|++++|.+++. ++..+..+++|+.|++++|.++... . .
T Consensus 230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc
Confidence 4566666655542 11 22456666666666666532 3444555666666666666665321 1 1
Q ss_pred CCCCCcCEEEccCCCCCccc----------cCcccEEEcCCCCCCCCCC------CC-CCCCCCEEEccCCCCCC----C
Q psy13451 430 PHLPSLESLDVSHNAPNIIL----------CVYFQSLKLTHCSLSSLHV------FP-HLPSLESLDVSHNAIDH----I 488 (522)
Q Consensus 430 ~~l~~L~~L~ls~N~l~~~~----------~~~L~~L~Ls~n~l~~~~~------l~-~~~~L~~L~Ls~N~l~~----~ 488 (522)
...++|+.|++++|.++... .++|+.|++++|.+++.+. +. ..++|+.|+|++|.+++ .
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 22356777777777766431 3677888888887766432 11 25688888888888885 2
Q ss_pred ChhhhcCCCCccEEEecCCCCcccc
Q psy13451 489 EDSVFAKYEACVQVILTGNPVSADM 513 (522)
Q Consensus 489 ~~~~l~~l~~L~~L~L~~N~l~~~~ 513 (522)
.+..+..+++|+.|++++|+++...
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred HHHHHHhCCCccEEECCCCCCCHHH
Confidence 2456677888888899888887653
No 182
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=2.8e-11 Score=125.29 Aligned_cols=186 Identities=12% Similarity=-0.026 Sum_probs=151.7
Q ss_pred HHHhcCCCCHHHHHHHHHHHHh---------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCC---
Q psy13451 33 EKRKNQEYDDEALSLTSEVLRN---------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQP--- 100 (522)
Q Consensus 33 ~~~~~~~~~~eal~~~~~~l~~---------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--- 100 (522)
.....|.+ ++|++.+.+++.+ +|....+|+.++.+...++. +++++..+++++.++|
T Consensus 60 ~~~~~G~~-~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~----------~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 60 LKHLKGQN-EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR----------LSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHCCCH-HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHhHhcc
Confidence 34556776 8999999999987 78888999999999999998 7888888888888643
Q ss_pred -----CCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh---cCCCCHHHHHHHHHHHHhcC
Q psy13451 101 -----KSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDR---HKVAPLKELNYSTEKIEANF 172 (522)
Q Consensus 101 -----k~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~---~~~~~~~el~~~~~~i~~~~ 172 (522)
....++..++|.+..+ ..+.+++++++++++++++|+|..+|...+.+... .+. .+++++.+.++++.+|
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~-~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~-~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKC-GGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP-SQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC-CCCTHHHHHHHHHHCS
T ss_pred cccchhhHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhcCC
Confidence 4456788899998888 66779999999999999999999999888877543 444 4788999999999999
Q ss_pred CcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 173 SNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 173 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
.+..+|...+..+..+... .+.++++..++.+++..+|.+..+|..++.++...+....
T Consensus 207 ~~~~~~~~l~~~~~~~~~~--------~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREE--------GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp SCHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHH
Confidence 9999999988877766432 2567889999999999999999999999888888777654
No 183
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=1.1e-10 Score=114.29 Aligned_cols=171 Identities=9% Similarity=-0.039 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCcc-chhhHHHHHHHhcCC
Q psy13451 42 DEALSLTSEVLR-NIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYG-TWFQRCYVLDHISRA 119 (522)
Q Consensus 42 ~eal~~~~~~l~-~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~-~W~~R~~il~~l~~~ 119 (522)
++|...+++++. ++|++..+|...+.++...+. ++++...++++++.+|+++. +|...+.++.+.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--- 147 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMK----------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA--- 147 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhccccCccHHHHHHHHHHHHh---
Confidence 899999999999 799999999999999999887 79999999999999999997 999999999888
Q ss_pred CChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCcc
Q psy13451 120 PNYEKELELCNYYLELDERNFHCWDYRRYVTDR-HKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPI 198 (522)
Q Consensus 120 ~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~-~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~ 198 (522)
+++++++..++++++.+|.++++|...+.+-.. .+. ++++.+.++++++.+|.+..+|...+.++...
T Consensus 148 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---------- 216 (308)
T 2ond_A 148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL---------- 216 (308)
T ss_dssp HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----------
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----------
Confidence 889999999999999999999998766555432 455 68999999999999999999999998888776
Q ss_pred chhHHHHHHHHHHHHHhc---CCC-CcchhhHHHHHhccCCCcc
Q psy13451 199 EQDKYVNEFSMVESAVFT---EPK-DQSAWFYQRWLLGERTSPV 238 (522)
Q Consensus 199 ~~~~~~~el~~~~~ai~~---~p~-~~s~W~y~~~ll~~~~~~~ 238 (522)
+.++++...+++++.. +|+ ...+|.-...+....+...
T Consensus 217 --g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 217 --NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp --CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred --CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 6889999999999996 564 6678877666665555433
No 184
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.25 E-value=4.1e-13 Score=139.39 Aligned_cols=126 Identities=15% Similarity=0.103 Sum_probs=71.0
Q ss_pred CcccEEEecCCCCCCc----ccccCCCCCCccEEEcCCCCCCCC------CC-CCCCCCcCEEEccCCCCCc-----cc-
Q psy13451 387 AHCKQVDLSNNPLTNN----CLRHLTPLVACESLKLTHCSLSSL------HV-FPHLPSLESLDVSHNAPNI-----IL- 449 (522)
Q Consensus 387 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~------~~-~~~l~~L~~L~ls~N~l~~-----~~- 449 (522)
++|+.|++++|.+++. ++..+..+++|+.|++++|.++.. +. +..+++|+.|++++|.++. ++
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 3555555555555532 233444555666666666655542 11 2245566666666666654 22
Q ss_pred ----cCcccEEEcCCCCCCCCCC-------CCCCCCCCEEEccCCCCCCCC----hhhhcCCCCccEEEecCCCCccc
Q psy13451 450 ----CVYFQSLKLTHCSLSSLHV-------FPHLPSLESLDVSHNAIDHIE----DSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 450 ----~~~L~~L~Ls~n~l~~~~~-------l~~~~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
+++|+.|++++|.+++.+. ....++|+.|++++|.++... +..+..+++|+.|++++|.++..
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 3566666776666654321 122356777777777766543 23455667777777777777644
No 185
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.25 E-value=3.1e-10 Score=108.00 Aligned_cols=185 Identities=10% Similarity=0.002 Sum_probs=154.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy13451 26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDI---NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS 102 (522)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~---~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~ 102 (522)
..+.........|++ ++|+..+.+++..+|++ ..+|..++.++...+. +++++..++.+++.+|++
T Consensus 17 ~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~----------~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 17 EAFERAMEFYNQGKY-DRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKE----------YLLAASEYERFIQIYQID 85 (261)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCc----------HHHHHHHHHHHHHHCCCC
Confidence 455666677788888 88999999999999999 8999999999999988 799999999999998865
Q ss_pred ---ccchhhHHHHHHHhc-----CCCChHHHHHHHHHHHhhcCCCcchh-----------------hHHHHHHHhcCCCC
Q psy13451 103 ---YGTWFQRCYVLDHIS-----RAPNYEKELELCNYYLELDERNFHCW-----------------DYRRYVTDRHKVAP 157 (522)
Q Consensus 103 ---y~~W~~R~~il~~l~-----~~~~~~~el~~~~~~l~~d~kn~~aW-----------------~~R~~~l~~~~~~~ 157 (522)
..+|+.++.+..... ..+++++++..++++++.+|.+..++ ...+.+....+. +
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-~ 164 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL-Y 164 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-H
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-H
Confidence 568999999998810 12889999999999999999999988 777999999888 7
Q ss_pred HHHHHHHHHHHHhcCCc---chHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchh
Q psy13451 158 LKELNYSTEKIEANFSN---YSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAW 224 (522)
Q Consensus 158 ~~el~~~~~~i~~~~~n---~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W 224 (522)
++++..++++++.+|.+ ..+|...+.+...+..... .....+.+++++..+++++..+|++..+.
T Consensus 165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~--~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSV--RARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSC--GGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccch--hhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 99999999999999984 4588888888876522110 00123789999999999999999996544
No 186
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=3.7e-11 Score=109.26 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=81.3
Q ss_pred cEEEecCCCcccccC---cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccC
Q psy13451 368 QITNLSSLQLTSIHH---MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSH 442 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~ 442 (522)
+.|++++|.++.++. +..+++|+.|+|++|.+++..|..|..+++|+.|++++|.|+.++ .|..+++|+.|++++
T Consensus 32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 799999999999864 789999999999999999888999999999999999999999975 388899999999999
Q ss_pred CCCCcccc------CcccEEEcCCCCCC
Q psy13451 443 NAPNIILC------VYFQSLKLTHCSLS 464 (522)
Q Consensus 443 N~l~~~~~------~~L~~L~Ls~n~l~ 464 (522)
|.++++.+ ++|+.|++++|.++
T Consensus 112 N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 112 NQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 98876532 34445555555444
No 187
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.25 E-value=2.2e-11 Score=127.16 Aligned_cols=202 Identities=11% Similarity=0.022 Sum_probs=147.3
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccc------------cH---HH---H------HHHHHHH
Q psy13451 33 EKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATL------------AE---EE---L------HELVDRE 88 (522)
Q Consensus 33 ~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~------------~~---~~---~------~~~~~~e 88 (522)
.....|++ ++|+..+.+++..+|+ ..+|..++.++...+... .+ +- . ..-++++
T Consensus 246 ~~~~~~~~-~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 246 FKFLKNDP-LGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHSSCH-HHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHCCCH-HHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 33444444 5556666666666666 566666555555543310 00 00 0 0014677
Q ss_pred HHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHH
Q psy13451 89 LKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKI 168 (522)
Q Consensus 89 L~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i 168 (522)
+..++.++..+|++..+|...+.++... +++++++..++++++.+|.+..+|...+.+....+. ++++++++++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~ 399 (514)
T 2gw1_A 324 GKDFDKAKELDPENIFPYIQLACLAYRE---NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND-FDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHTCSSCSHHHHHHHHHTTTT---TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 8888888888888888888888777776 788888888888888888888888888888888887 688888888888
Q ss_pred HhcCCcch------HhhHHHHHhch---hCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 169 EANFSNYS------AWHYRSKLLPL---LYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 169 ~~~~~n~s------aW~~r~~ll~~---l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
+.+|.+.. +|..++.+... . +.++++++.+.+++..+|++..+|..+..++...++...
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTV------------ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCT------------THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhc------------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence 88888865 88888888776 6 889999999999999999999999999999888877655
Q ss_pred ceecccCCCceEEEEecccccccc
Q psy13451 240 IISAGVLPSGVTFVTFNQLVDLTS 263 (522)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~ 263 (522)
+...|.+++++.|
T Consensus 468 -----------A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 468 -----------AITLFEESADLAR 480 (514)
T ss_dssp -----------HHHHHHHHHHHCS
T ss_pred -----------HHHHHHHHHHhcc
Confidence 3344555555544
No 188
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=4.7e-11 Score=106.76 Aligned_cols=107 Identities=24% Similarity=0.332 Sum_probs=91.7
Q ss_pred ccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccccCcccEEEcCCCCCCCC
Q psy13451 389 CKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSL 466 (522)
Q Consensus 389 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~~~~L~~L~Ls~n~l~~~ 466 (522)
-+.+++++|.++ .+|..+. ++|+.|++++|.|+.++ .|..+++|+.|+|++|+++.++..
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~--------------- 75 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG--------------- 75 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---------------
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh---------------
Confidence 478999999997 7787664 89999999999999984 478888888888888877654322
Q ss_pred CCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 467 HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 467 ~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
.|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|++.|+|.
T Consensus 76 -~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 76 -VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp -TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred -HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 15678899999999999999999999999999999999999999884
No 189
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.25 E-value=4.8e-11 Score=106.25 Aligned_cols=108 Identities=23% Similarity=0.361 Sum_probs=88.5
Q ss_pred cccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccccCcccEEEcCCCCCCC
Q psy13451 388 HCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSS 465 (522)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~~~~L~~L~Ls~n~l~~ 465 (522)
..+.+++++|.++ .+|..+. ++|+.|++++|.|+.++ .|..+++|+.|++++|+++.++..
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-------------- 72 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG-------------- 72 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT--------------
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh--------------
Confidence 5678999999998 6776664 88999999999999984 488899999988888887655422
Q ss_pred CCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCccccc
Q psy13451 466 LHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 466 ~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
.|..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|++.|+|.
T Consensus 73 --~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 73 --VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp --TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred --hccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 15667888888888888888888888888888888888888888874
No 190
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.25 E-value=9e-11 Score=125.18 Aligned_cols=163 Identities=9% Similarity=-0.124 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN 121 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~ 121 (522)
++|++.+.+++.++|++..+|...+.++...+. +++++..++++++.+|++..+|...+.++... ++
T Consensus 6 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~ 72 (568)
T 2vsy_A 6 PRELLQLRAAVRHRPQDFVAWLMLADAELGMGD----------TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ---QR 72 (568)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT---TC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---CC
Confidence 789999999999999999999999999999988 79999999999999999999999999999998 99
Q ss_pred hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchh
Q psy13451 122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201 (522)
Q Consensus 122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 201 (522)
++++++.++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+....... +
T Consensus 73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~---------g 142 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ-AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDW---------R 142 (568)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC---------T
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcc---------c
Confidence 9999999999999999999999999999999998 79999999999999999999999999888776322 5
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhhHH
Q psy13451 202 KYVNEFSMVESAVFTEPKDQSAWFYQ 227 (522)
Q Consensus 202 ~~~~el~~~~~ai~~~p~~~s~W~y~ 227 (522)
.++++++.+.+++..+|.+.++|...
T Consensus 143 ~~~~A~~~~~~al~~~p~~~~~~~~l 168 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQGVGAVEPFAFL 168 (568)
T ss_dssp THHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred cHHHHHHHHHHHHhcCCcccChHHHh
Confidence 78999999999999999998888543
No 191
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.25 E-value=5.4e-11 Score=125.07 Aligned_cols=195 Identities=8% Similarity=0.008 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN 121 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~ 121 (522)
++|+..+.+++..+|++..+|..++.++...+. +++++..++.++..+|++..+|..++.++... ++
T Consensus 293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---g~ 359 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD----------YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ---GK 359 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT---TC
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CC
Confidence 556666666666666666666666666666555 56666666666666666666666666666666 66
Q ss_pred hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhH------HHHHhchhCCCCCCC
Q psy13451 122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHY------RSKLLPLLYPDPNNH 195 (522)
Q Consensus 122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~------r~~ll~~l~~~~~~~ 195 (522)
+++++..++++++.+|.+..+|.+.+.+....+. +++++++++++++.+|.+..+|.. ++.++...... ..
T Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~ 436 (537)
T 3fp2_A 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD-FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ--DP 436 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc--cc
Confidence 6666666666666666666666666666666665 466666666666666555544332 22222222000 00
Q ss_pred CccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEEecccccccc
Q psy13451 196 LPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTS 263 (522)
Q Consensus 196 ~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (522)
.....+.++++++++.+++..+|++..+|..+..++...+++.. |...|.+++++.+
T Consensus 437 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~-----------A~~~~~~al~~~~ 493 (537)
T 3fp2_A 437 TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE-----------AIELFEDSAILAR 493 (537)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHHHC-
T ss_pred hhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH-----------HHHHHHHHHHhCC
Confidence 01112789999999999999999999999999999988887665 4444666666544
No 192
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.24 E-value=6.2e-11 Score=129.24 Aligned_cols=165 Identities=9% Similarity=-0.069 Sum_probs=140.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhh
Q psy13451 29 ETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQ 108 (522)
Q Consensus 29 ~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~ 108 (522)
.........|++ ++|++.+++++.++|++..+|+.++.++...+. +++++..++++++.+|+++.+|..
T Consensus 438 ~~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 438 MEVRALLDLGDV-AKATRKLDDLAERVGWRWRLVWYRAVAELLTGD----------YDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp HHHHHHHHHTCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred HHHHHHHhcCCH-HHHHHHHHHHhccCcchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCChHHHHH
Confidence 344455566776 889999999999999999999999999999988 799999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451 109 RCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL 188 (522)
Q Consensus 109 R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l 188 (522)
++.++... +++++ ++.|+++++.+|.+..+|.+++.++...+. ++++++.++++++.+|.+..||..++.++...
T Consensus 507 lg~~~~~~---g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~ 581 (681)
T 2pzi_A 507 LAATAELA---GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD-RVGAVRTLDEVPPTSRHFTTARLTSAVTLLSG 581 (681)
T ss_dssp HHHHHHHH---TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHTSCTTSTTHHHHHHHHHHHTC--
T ss_pred HHHHHHHc---CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC-HHHHHHHHHhhcccCcccHHHHHHHHHHHHcc
Confidence 99999999 88889 999999999999999999999999999998 79999999999999999999999999987553
Q ss_pred CCCCCCCCccchhHHHHHHHHHHHH
Q psy13451 189 YPDPNNHLPIEQDKYVNEFSMVESA 213 (522)
Q Consensus 189 ~~~~~~~~~~~~~~~~~el~~~~~a 213 (522)
... .....+.+.+++..+..+
T Consensus 582 ~~~----~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 582 RST----SEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp ---------CCHHHHHHHHHHHHTS
T ss_pred CCC----CCCCHHHHHHHHHHHhhC
Confidence 210 011234566666555444
No 193
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=5.7e-14 Score=128.71 Aligned_cols=95 Identities=18% Similarity=0.101 Sum_probs=45.7
Q ss_pred EEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCcc
Q psy13451 369 ITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII 448 (522)
Q Consensus 369 ~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~ 448 (522)
.|++++|.++.+|.+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++.++++..+++|+.|++++|.++.+
T Consensus 52 ~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~ 130 (198)
T 1ds9_A 52 HLALSTNNIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNW 130 (198)
T ss_dssp EEECSEEEESCCCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCH
T ss_pred EEECCCCCCccccccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCch
Confidence 45555555555444444455555555555554 33433334445555555555555444444444555555555554432
Q ss_pred c-------cCcccEEEcCCCCCC
Q psy13451 449 L-------CVYFQSLKLTHCSLS 464 (522)
Q Consensus 449 ~-------~~~L~~L~Ls~n~l~ 464 (522)
+ +++|+.|++++|.++
T Consensus 131 ~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 131 GEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHHHTTTTTCSEEEECSCHHH
T ss_pred hHHHHHhcCCCCCEEEecCCccc
Confidence 2 244455555555443
No 194
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.23 E-value=1.1e-11 Score=108.09 Aligned_cols=118 Identities=8% Similarity=-0.039 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHH
Q psy13451 88 ELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEK 167 (522)
Q Consensus 88 eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~ 167 (522)
+-..+..++..+|++..+|+.++.++.+. +++++++..++++++.+|.|..+|...+.++...+. +++++++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~---g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~Ai~~~~~a 96 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNK---GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ-FQQAADLYAVA 96 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc-HHHHHHHHHHH
Confidence 33556778889999999999999999998 999999999999999999999999999999999998 79999999999
Q ss_pred HHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCc
Q psy13451 168 IEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQ 221 (522)
Q Consensus 168 i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~ 221 (522)
++.+|.|..+|++++.++..+ +++++++.++++++..+|+..
T Consensus 97 l~l~P~~~~~~~~lg~~~~~l------------g~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLRL------------KAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCCCHH
T ss_pred HhhCCCCcHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999998 899999999999999999864
No 195
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.22 E-value=3e-10 Score=108.14 Aligned_cols=167 Identities=11% Similarity=-0.010 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHh----CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc
Q psy13451 42 DEALSLTSEVLRN----IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS 117 (522)
Q Consensus 42 ~eal~~~~~~l~~----np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~ 117 (522)
++|+..+.+++.. +|.+..+|..++.+....+. +++++..++.++..+|++..+|...+.+....
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~- 90 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGL----------RALARNDFSQALAIRPDMPEVFNYLGIYLTQA- 90 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc-
Confidence 7789999999987 46788999999999999988 79999999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCc
Q psy13451 118 RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLP 197 (522)
Q Consensus 118 ~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~ 197 (522)
+++++++.+++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+....... ...
T Consensus 91 --~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~--------- 157 (275)
T 1xnf_A 91 --GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR-DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQK--------- 157 (275)
T ss_dssp --TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHH---------
T ss_pred --cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHh---------
Confidence 999999999999999999999999999999999998 7999999999999999998666555433 222
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCC
Q psy13451 198 IEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERT 235 (522)
Q Consensus 198 ~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~ 235 (522)
+.+++++..+.+++..+|.+...|......+....
T Consensus 158 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (275)
T 1xnf_A 158 ---LDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS 192 (275)
T ss_dssp ---HCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSC
T ss_pred ---cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcC
Confidence 78999999999999999999888876555555443
No 196
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.21 E-value=1.5e-10 Score=103.59 Aligned_cols=106 Identities=24% Similarity=0.235 Sum_probs=88.9
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCC--CCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV--FPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ls~N 443 (522)
+.|++++|.+++++. +..+++|+.|++++|.+++..+..|..+++|+.|++++|.++.++. +..+++|+.|++++|
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence 799999999999876 7889999999999999996666678999999999999999999863 678888888888888
Q ss_pred CCCccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCCCCCCC
Q psy13451 444 APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489 (522)
Q Consensus 444 ~l~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~l~~~~ 489 (522)
.++.++.. .+..+++|+.|+|++|.+....
T Consensus 111 ~l~~~~~~----------------~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 111 QLKSVPDG----------------IFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCSCCCTT----------------TTTTCTTCCEEECCSSCBCCCH
T ss_pred cceEeCHH----------------HhcCCcccCEEEecCCCeeccC
Confidence 77654321 1566788999999999988654
No 197
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.21 E-value=4.4e-10 Score=109.23 Aligned_cols=171 Identities=7% Similarity=-0.041 Sum_probs=148.6
Q ss_pred cCCCCHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHH
Q psy13451 37 NQEYDDEALSLTSEVLRN--IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLD 114 (522)
Q Consensus 37 ~~~~~~eal~~~~~~l~~--np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~ 114 (522)
....-++|++.+++++.. +|++.++|...+.++...++ +++++..++. |.+..+|..++.++.
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~----------~~~Al~~l~~-----~~~~~~~~~l~~~~~ 141 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN----------PDAALRTLHQ-----GDSLECMAMTVQILL 141 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC----------HHHHHHHHTT-----CCSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHhC-----CCCHHHHHHHHHHHH
Confidence 344458899999999986 69999999999999999988 7899998887 999999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHH--hcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCC
Q psy13451 115 HISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTD--RHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDP 192 (522)
Q Consensus 115 ~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~--~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~ 192 (522)
++ ++++++++.++++++.+|.+.......+|+-. ..++ +++++..++++++.+|.+..+|+.++.++..+
T Consensus 142 ~~---g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~-~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~---- 213 (291)
T 3mkr_A 142 KL---DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK-LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ---- 213 (291)
T ss_dssp HT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT----
T ss_pred HC---CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----
Confidence 99 89999999999999999997644444444432 2244 68999999999999999999999999999988
Q ss_pred CCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcc
Q psy13451 193 NNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPV 238 (522)
Q Consensus 193 ~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~ 238 (522)
++++++.+.+.+++..+|+|..+|..+..++...++..
T Consensus 214 --------g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 214 --------GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP 251 (291)
T ss_dssp --------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCH
Confidence 89999999999999999999999999998888777654
No 198
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.20 E-value=1.4e-11 Score=113.48 Aligned_cols=171 Identities=8% Similarity=-0.015 Sum_probs=136.1
Q ss_pred chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhh----------------HHHHHHHhcCCCC
Q psy13451 58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQ----------------RCYVLDHISRAPN 121 (522)
Q Consensus 58 ~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~----------------R~~il~~l~~~~~ 121 (522)
....+..++..+...+. +++++..++.++..+|++..+|+. ++.++... ++
T Consensus 3 ~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~ 69 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQ----------NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN---RN 69 (208)
T ss_dssp CHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT---TC
T ss_pred CHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC---CC
Confidence 34567778888888877 799999999999999999999999 99999998 99
Q ss_pred hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchh
Q psy13451 122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201 (522)
Q Consensus 122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 201 (522)
+++++..++++++.+|++..+|..++.+....+. +++++++++++++.+|.|..+|..++.++.... ..
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~----------~~ 138 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ-EKDALRMYEKILQLEADNLAANIFLGNYYYLTA----------EQ 138 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----------HH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh----------HH
Confidence 9999999999999999999999999999999998 799999999999999999999999998875541 12
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCcccceecccCCCceEEEEeccccccccc
Q psy13451 202 KYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTST 264 (522)
Q Consensus 202 ~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (522)
........+.+++..+|. ..+|++++......+++.. |+..|.+++.++|+
T Consensus 139 ~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~-----------A~~~~~~al~l~P~ 189 (208)
T 3urz_A 139 EKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEK-----------ARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHH-----------HHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHH-----------HHHHHHHHHHhCCC
Confidence 344556666666644432 2466666655555555544 55567888877664
No 199
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.20 E-value=1.4e-09 Score=103.40 Aligned_cols=182 Identities=12% Similarity=-0.012 Sum_probs=135.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451 27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW 106 (522)
Q Consensus 27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W 106 (522)
...........|++ ++|+..+.+++.++|++..+|...+.++...+. +++++..++.++..+|++..+|
T Consensus 46 ~~~l~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~ 114 (275)
T 1xnf_A 46 LYERGVLYDSLGLR-ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN----------FDAAYEAFDSVLELDPTYNYAH 114 (275)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHHHcccH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhcCccccHHH
Confidence 33444555566766 889999999999999999999999999999888 7999999999999999999999
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451 107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP 186 (522)
Q Consensus 107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~ 186 (522)
..++.++... +++++++..++++++.+|.+..+......... .+. +++++.++.+++..+|.+...|......+.
T Consensus 115 ~~la~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 1xnf_A 115 LNRGIALYYG---GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ-KLD-EKQAKEVLKQHFEKSDKEQWGWNIVEFYLG 189 (275)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHC-HHHHHHHHHHHHHHSCCCSTHHHHHHHHTT
T ss_pred HHHHHHHHHh---ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-hcC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 9999999998 89999999999999999998866555544433 344 577888888888887777665543333222
Q ss_pred hhCCCCC--------CC-----------------CccchhHHHHHHHHHHHHHhcCCCCcchh
Q psy13451 187 LLYPDPN--------NH-----------------LPIEQDKYVNEFSMVESAVFTEPKDQSAW 224 (522)
Q Consensus 187 ~l~~~~~--------~~-----------------~~~~~~~~~~el~~~~~ai~~~p~~~s~W 224 (522)
....... .. .....+.++++++++++++..+|++...+
T Consensus 190 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 190 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 1100000 00 00011567788888888888888776555
No 200
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.20 E-value=2.8e-10 Score=118.59 Aligned_cols=171 Identities=10% Similarity=-0.047 Sum_probs=150.9
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHH
Q psy13451 34 KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVL 113 (522)
Q Consensus 34 ~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il 113 (522)
....|++ ++|+..+.+++.++|++..+|...+.++...+. +++++..++.++..+|.+..+|..++.++
T Consensus 314 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 382 (514)
T 2gw1_A 314 NFILQNY-DQAGKDFDKAKELDPENIFPYIQLACLAYRENK----------FDDCETLFSEAKRKFPEAPEVPNFFAEIL 382 (514)
T ss_dssp HHHTTCT-THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTC----------HHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred HHHhCCH-HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence 3344444 667777777777777777777777777777666 79999999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhhcCCCcc------hhhHHHHHHHh---cCCCCHHHHHHHHHHHHhcCCcchHhhHHHHH
Q psy13451 114 DHISRAPNYEKELELCNYYLELDERNFH------CWDYRRYVTDR---HKVAPLKELNYSTEKIEANFSNYSAWHYRSKL 184 (522)
Q Consensus 114 ~~l~~~~~~~~el~~~~~~l~~d~kn~~------aW~~R~~~l~~---~~~~~~~el~~~~~~i~~~~~n~saW~~r~~l 184 (522)
... +++++++..++++++.+|.+.. +|...+.+... .+. +++++++++++++.+|.+..+|...+.+
T Consensus 383 ~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 383 TDK---NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN-FIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHT---TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH-HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHC---CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC-HHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 999 8999999999999999999966 99999999999 887 7999999999999999999999999999
Q ss_pred hchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHh
Q psy13451 185 LPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL 231 (522)
Q Consensus 185 l~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll 231 (522)
.... +.++++++++.+++..+|++..+|....++-
T Consensus 459 ~~~~------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 459 KLQQ------------EDIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HHHT------------TCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHh------------cCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 9888 7899999999999999999999998776654
No 201
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.19 E-value=1.5e-10 Score=100.45 Aligned_cols=123 Identities=4% Similarity=-0.187 Sum_probs=114.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHH
Q psy13451 47 LTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKEL 126 (522)
Q Consensus 47 ~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el 126 (522)
.+.+++.++|++..+|..++.++...+. +++++..+..++..+|.+..+|+.++.++... +++++++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~ 75 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGX----------YEDAHXVFQALCVLDHYDSRFFLGLGACRQAM---GQYDLAI 75 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH---hhHHHHH
Confidence 4678899999999999999999999988 79999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHH
Q psy13451 127 ELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSK 183 (522)
Q Consensus 127 ~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ 183 (522)
..+++++.++|.+..+|.+.+.+...++. +++++++++++++.+|.+...+..+..
T Consensus 76 ~~~~~al~l~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 76 HSYSYGAVMDIXEPRFPFHAAECLLQXGE-LAEAESGLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp HHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence 99999999999999999999999999998 799999999999999988766554443
No 202
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.18 E-value=4.6e-11 Score=103.66 Aligned_cols=106 Identities=10% Similarity=0.035 Sum_probs=97.9
Q ss_pred cchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCC-------Ccc-----hhhHHHHHHHhcCCCCHHHHHHHHHHHHh-
Q psy13451 104 GTWFQRCYVLDHISRAPNYEKELELCNYYLELDER-------NFH-----CWDYRRYVTDRHKVAPLKELNYSTEKIEA- 170 (522)
Q Consensus 104 ~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~k-------n~~-----aW~~R~~~l~~~~~~~~~el~~~~~~i~~- 170 (522)
..|..++..+... +++++++++|+++++.+|. +.. +|.+|+.++..+++ +++++++++++|+.
T Consensus 12 ~~~~~~G~~l~~~---g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr-~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 12 YLALSDAQRQLVA---GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhh
Confidence 4577888888888 9999999999999999999 443 99999999999998 79999999999999
Q ss_pred ------cCCcchHh----hHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhh
Q psy13451 171 ------NFSNYSAW----HYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWF 225 (522)
Q Consensus 171 ------~~~n~saW----~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~ 225 (522)
+|.+..|| +.|+.++..+ ++++++++++++++.++|+|..+..
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~l------------gr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGL------------GRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHC------------CCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999 9999999999 8999999999999999999987653
No 203
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.17 E-value=4.4e-10 Score=118.01 Aligned_cols=160 Identities=11% Similarity=0.016 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN 121 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~ 121 (522)
++|+..+.+++.++|+ ..+|...+.++...+. +++++..++.++..+|++..+|..++.++... ++
T Consensus 260 ~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 325 (537)
T 3fp2_A 260 LDAQVLLQESINLHPT-PNSYIFLALTLADKEN----------SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL---QD 325 (537)
T ss_dssp HHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSC----------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TC
T ss_pred HHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcC----------HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc---CC
Confidence 7899999999999999 8999999998888777 68999999999999999999999999999998 89
Q ss_pred hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchh
Q psy13451 122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQD 201 (522)
Q Consensus 122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 201 (522)
+++++..++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|.+.+.+.... +
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------g 392 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK-FTESEAFFNETKLKFPTLPEVPTFFAEILTDR------------G 392 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT------------T
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh------------C
Confidence 9999999999999999999999999999999988 79999999999999999999999999998887 7
Q ss_pred HHHHHHHHHHHHHhcCCCCcchhhHHH
Q psy13451 202 KYVNEFSMVESAVFTEPKDQSAWFYQR 228 (522)
Q Consensus 202 ~~~~el~~~~~ai~~~p~~~s~W~y~~ 228 (522)
.++++++.+.+++..+|.+..+|....
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 899999999999999999988875443
No 204
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.16 E-value=6.9e-10 Score=107.83 Aligned_cols=164 Identities=10% Similarity=-0.064 Sum_probs=141.3
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHH
Q psy13451 33 EKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYV 112 (522)
Q Consensus 33 ~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~i 112 (522)
.....|.+ ++|+..+.+ |++..+|..++.++..+++ +++++..++.++..+|++..+.....|+
T Consensus 110 ~~~~~g~~-~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~----------~~~A~~~l~~~~~~~p~~~~~~l~~a~~ 173 (291)
T 3mkr_A 110 IYFYDQNP-DAALRTLHQ-----GDSLECMAMTVQILLKLDR----------LDLARKELKKMQDQDEDATLTQLATAWV 173 (291)
T ss_dssp HHHHTTCH-HHHHHHHTT-----CCSHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHCCCH-HHHHHHHhC-----CCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhhCcCcHHHHHHHHHH
Confidence 33445555 888998887 9999999999999999998 7999999999999999987555555565
Q ss_pred HHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCC
Q psy13451 113 LDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDP 192 (522)
Q Consensus 113 l~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~ 192 (522)
-... ..+++++++.+++++++.+|.+..+|+.++.+....++ ++++.+.++++++.+|.|..+|.+++.+....
T Consensus 174 ~l~~-~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~---- 247 (291)
T 3mkr_A 174 SLAA-GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR-WEAAEGVLQEALDKDSGHPETLINLVVLSQHL---- 247 (291)
T ss_dssp HHHH-CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----
T ss_pred HHHh-CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Confidence 5444 45789999999999999999999999999999999998 79999999999999999999999999988887
Q ss_pred CCCCccchhHHHH-HHHHHHHHHhcCCCCcchhhH
Q psy13451 193 NNHLPIEQDKYVN-EFSMVESAVFTEPKDQSAWFY 226 (522)
Q Consensus 193 ~~~~~~~~~~~~~-el~~~~~ai~~~p~~~s~W~y 226 (522)
++..+ ..+++.+++..+|+|..+-.+
T Consensus 248 --------g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 248 --------GKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp --------TCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 45555 468999999999999877654
No 205
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.16 E-value=5.8e-10 Score=115.36 Aligned_cols=188 Identities=12% Similarity=0.039 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc----
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS---- 117 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~---- 117 (522)
++|...+.+++.++|++..+|+..+.++...+. +++++..++++++.+|++..+|+..+.+.....
T Consensus 230 ~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~ 299 (472)
T 4g1t_A 230 GEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE----------PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299 (472)
T ss_dssp CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc----------hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhh
Confidence 578888888888888888888888888888877 799999999999999999999998887764320
Q ss_pred ------------CCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchH--hhHH-H
Q psy13451 118 ------------RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA--WHYR-S 182 (522)
Q Consensus 118 ------------~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~sa--W~~r-~ 182 (522)
....+++++..++++++.+|.+..+|...+.+....+. +++++++++++++.++.+... ++++ +
T Consensus 300 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~kaL~~~~~~~~~~~~~~~~~ 378 (472)
T 4g1t_A 300 NLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ-YEEAEYYFQKEFSKELTPVAKQLLHLRYG 378 (472)
T ss_dssp HC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC-HHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc-HHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 01236788999999999999999999999999999988 799999999999999887653 2222 2
Q ss_pred HH-hchhCCCCCCCCccchhHHHHHHHHHHHH------------------------HhcCCCCcchhhHHHHHhccCCCc
Q psy13451 183 KL-LPLLYPDPNNHLPIEQDKYVNEFSMVESA------------------------VFTEPKDQSAWFYQRWLLGERTSP 237 (522)
Q Consensus 183 ~l-l~~l~~~~~~~~~~~~~~~~~el~~~~~a------------------------i~~~p~~~s~W~y~~~ll~~~~~~ 237 (522)
.+ .... +.++++++++.+| +..+|++..+|..++.+....+++
T Consensus 379 ~~~~~~~------------~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~ 446 (472)
T 4g1t_A 379 NFQLYQM------------KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKM 446 (472)
T ss_dssp HHHHHTS------------SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHC------------CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 22 1122 3344555555444 555788889999999988877766
Q ss_pred ccceecccCCCceEEEEecccccccc
Q psy13451 238 VQIISAGVLPSGVTFVTFNQLVDLTS 263 (522)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (522)
.. |+..|.+++++.+
T Consensus 447 ~~-----------A~~~y~kALe~~~ 461 (472)
T 4g1t_A 447 QQ-----------ADEDSERGLESGS 461 (472)
T ss_dssp C-------------------------
T ss_pred HH-----------HHHHHHHHHhcCC
Confidence 55 7888999888654
No 206
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.14 E-value=2e-10 Score=98.67 Aligned_cols=129 Identities=7% Similarity=-0.167 Sum_probs=115.1
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHH
Q psy13451 46 SLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKE 125 (522)
Q Consensus 46 ~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~e 125 (522)
..+.+++.++|++..+|..++.++...+. +++++..++.++..+|++..+|...+.++... ++++++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A 71 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGK----------WDDAQKIFQALCMLDHYDARYFLGLGACRQSL---GLYEQA 71 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHcc----------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH---hhHHHH
Confidence 35677889999999999999999999888 79999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451 126 LELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL 188 (522)
Q Consensus 126 l~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l 188 (522)
+.++++++..+|.+..+|.+.+.++..++. +++++++++++++.+|.+...+..+..+...+
T Consensus 72 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 72 LQSYSYGALMDINEPRFPFHAAECHLQLGD-LDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999998 79999999999999999887766655544433
No 207
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.14 E-value=1.5e-10 Score=100.51 Aligned_cols=124 Identities=6% Similarity=-0.158 Sum_probs=114.8
Q ss_pred HHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy13451 90 KLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIE 169 (522)
Q Consensus 90 ~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~ 169 (522)
..+..++..+|++..+|+.++.++... +++++++..+++++..+|.|..+|..++.+....+. ++++++++++++.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~ 83 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQS---GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ-YDLAIHSYSYGAV 83 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHc---CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHh
Confidence 356788999999999999999999998 999999999999999999999999999999999998 7999999999999
Q ss_pred hcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHH
Q psy13451 170 ANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRW 229 (522)
Q Consensus 170 ~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ 229 (522)
.+|.|..+|.+++.++..+ +.++++++++.+++..+|++...+..+..
T Consensus 84 l~p~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQX------------GELAEAESGLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence 9999999999999999988 88999999999999999998876554433
No 208
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.14 E-value=1.9e-09 Score=100.34 Aligned_cols=173 Identities=5% Similarity=-0.076 Sum_probs=147.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc
Q psy13451 27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDIN---SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY 103 (522)
Q Consensus 27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~---t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y 103 (522)
.+.........|++ ++|+..+++++..+|+.. .+|..++.++...+. +++++..++.+++.+|++.
T Consensus 7 ~~~~a~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~----------~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 7 IYATAQQKLQDGNW-RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD----------LPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHCcCCC
Confidence 44555666677888 899999999999999864 789999999999988 7999999999999999998
Q ss_pred c---chhhHHHHHHHhc---------------CCCChHHHHHHHHHHHhhcCCCcchhh-----------------HHHH
Q psy13451 104 G---TWFQRCYVLDHIS---------------RAPNYEKELELCNYYLELDERNFHCWD-----------------YRRY 148 (522)
Q Consensus 104 ~---~W~~R~~il~~l~---------------~~~~~~~el~~~~~~l~~d~kn~~aW~-----------------~R~~ 148 (522)
. +|+.++.+...+. ..+++++++..++++++.+|.+..+|. ..+.
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~ 155 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAE 155 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 8999999887630 135789999999999999999999984 4455
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCcc---hHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcch
Q psy13451 149 VTDRHKVAPLKELNYSTEKIEANFSNY---SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSA 223 (522)
Q Consensus 149 ~l~~~~~~~~~el~~~~~~i~~~~~n~---saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~ 223 (522)
+....+. +.+++..++++++.+|.+. .+|..++.+...+ +.++++++.++.+....|.+..-
T Consensus 156 ~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~------------g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 156 YYTERGA-WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM------------QMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHTC-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHcCc-HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc------------CCcHHHHHHHHHHHhhCCCchhh
Confidence 5666666 6899999999999999986 6799999999998 88999999999999999987643
No 209
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=1.4e-10 Score=115.77 Aligned_cols=107 Identities=18% Similarity=0.268 Sum_probs=81.6
Q ss_pred cEEEecCC-CCCCcccccCCCCCCccEEEcCC-CCCCCCC--CCCCCCCcCEEEccCCCCCccccCcccEEEcCCCCCCC
Q psy13451 390 KQVDLSNN-PLTNNCLRHLTPLVACESLKLTH-CSLSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSS 465 (522)
Q Consensus 390 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~~~~L~~L~Ls~n~l~~ 465 (522)
..++++++ .++ .+|. +..+++|+.|+|++ |.|+.++ .|..+++|+.|+|++|.|+++++..
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~------------- 75 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA------------- 75 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG-------------
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH-------------
Confidence 35688887 787 5777 88888899999985 8888876 3788888888888888776654321
Q ss_pred CCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451 466 LHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 466 ~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 515 (522)
|..+++|+.|+|++|.|+.+++..+..++ |+.|+|.+|+|.|+|.+
T Consensus 76 ---~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 76 ---FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp ---GGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred ---hcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 45667888888888888888776666665 88888888888888753
No 210
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.12 E-value=3.3e-10 Score=98.24 Aligned_cols=108 Identities=15% Similarity=0.090 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC-------chH-----HHHHHHHHHHHhhccccHHHHHHHHHHHH
Q psy13451 22 KWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPD-------INS-----LWNYRKEVLLHMKATLAEEELHELVDREL 89 (522)
Q Consensus 22 ~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~-------~~t-----~wn~R~~~l~~l~~~~~~~~~~~~~~~eL 89 (522)
.+-..+.+......+.|.| ++|+..|+++|.++|+ +.. +|+.|+.++..+++ +++++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~-eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr----------~~eAl 77 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEY-DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS----------FDEAL 77 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC----------HHHHH
T ss_pred HHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC----------HHHHH
Confidence 3444566677777788888 8999999999999999 444 99999999999998 79999
Q ss_pred HHHHHHHHh-------CCCCccch----hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchh
Q psy13451 90 KLTKDCLLA-------QPKSYGTW----FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCW 143 (522)
Q Consensus 90 ~~~~~~l~~-------~pk~y~~W----~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW 143 (522)
..++.+|.+ +|+++.+| +.|+.++..+ +++++++..|+++++++|.+-...
T Consensus 78 ~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l---gr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGL---GRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp HHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHC---CCHHHHHHHHHHHHhcCCCcHHHH
Confidence 999999999 99999999 9999999999 999999999999999999776554
No 211
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=3.1e-10 Score=112.39 Aligned_cols=142 Identities=20% Similarity=0.276 Sum_probs=99.2
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCC----CCCCC--------CCC---
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCS----LSSLH--------VFP--- 430 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~--------~~~--- 430 (522)
+.+++++ .++.++. |.++++|+.|++++|.++...+..|.++.++..+.+..+. ...+. .+.
T Consensus 104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i 182 (329)
T 3sb4_A 104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTI 182 (329)
T ss_dssp CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEE
T ss_pred cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeE
Confidence 4666666 6666655 6777777777777777665555666666555555544311 00000 000
Q ss_pred -----------------------------------------CCCCcCEEEccCCCCCccc------cCcccEEEcCCCCC
Q psy13451 431 -----------------------------------------HLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSL 463 (522)
Q Consensus 431 -----------------------------------------~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l 463 (522)
.+++|+.+++++|.++.++ +.+|+.|++++| +
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i 261 (329)
T 3sb4_A 183 QVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L 261 (329)
T ss_dssp EECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred EecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c
Confidence 2678888899888888776 568888999887 7
Q ss_pred CCCCC--CCCCCCCC-EEEccCCCCCCCChhhhcCCCCccEEEecCCCCccc
Q psy13451 464 SSLHV--FPHLPSLE-SLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 464 ~~~~~--l~~~~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
+.++. |.++.+|+ .+++.+ .++.++..+|.+|++|+.|++++|.+...
T Consensus 262 ~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 262 KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence 77765 88888898 999988 78888888899999999999988877643
No 212
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.09 E-value=2.2e-10 Score=113.75 Aligned_cols=133 Identities=12% Similarity=-0.018 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC---------------ccch
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS---------------YGTW 106 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~---------------y~~W 106 (522)
++|++.+.+++..+|+...+|+.++.++...+. +++++..+++++..+|.+ ..+|
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~----------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK----------YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHH
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence 346677788889999999999999999999988 799999999999999999 5999
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451 107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP 186 (522)
Q Consensus 107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~ 186 (522)
..++.++..+ +++++++..|+++++++|.|..+|..++.++..++. +++++++++++++.+|.|..+|..++.+..
T Consensus 200 ~nla~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 200 LNLAMCHLKL---QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND-FELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999998 799999999999999999999999999998
Q ss_pred hh
Q psy13451 187 LL 188 (522)
Q Consensus 187 ~l 188 (522)
.+
T Consensus 276 ~~ 277 (336)
T 1p5q_A 276 RI 277 (336)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 213
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.09 E-value=9e-10 Score=92.09 Aligned_cols=118 Identities=10% Similarity=0.011 Sum_probs=109.1
Q ss_pred CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451 56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL 135 (522)
Q Consensus 56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~ 135 (522)
|+...+|..++..+...+. +++++..++.++..+|++..+|..++.++..+ +++++++..++++++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSD----------WPNAVKAYTEMIKRAPEDARGYSNRAAALAKL---MSFPEAIADCNKAIEK 67 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---cCHHHHHHHHHHHHHh
Confidence 5567889999999999888 79999999999999999999999999999999 9999999999999999
Q ss_pred cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhc------CCcchHhhHHHHHhch
Q psy13451 136 DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEAN------FSNYSAWHYRSKLLPL 187 (522)
Q Consensus 136 d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~------~~n~saW~~r~~ll~~ 187 (522)
+|.+..+|..++.+...++. ++++++++.++++.+ |.|..++.....+...
T Consensus 68 ~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 DPNFVRAYIRKATAQIAVKE-YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999998 799999999999999 9998888777665544
No 214
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.06 E-value=1.3e-09 Score=95.94 Aligned_cols=117 Identities=13% Similarity=-0.026 Sum_probs=110.2
Q ss_pred CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHh
Q psy13451 55 IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLE 134 (522)
Q Consensus 55 np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~ 134 (522)
+++...+|..++.++...+. +++++..++.++..+|++..+|..++.++... +++++++..++++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~ 73 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKE----------YSKAIDLYTQALSIAPANPIYLSNRAAAYSAS---GQHEKAAEDAELATV 73 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHH
Confidence 56678899999999999888 79999999999999999999999999999999 999999999999999
Q ss_pred hcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHh
Q psy13451 135 LDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLL 185 (522)
Q Consensus 135 ~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll 185 (522)
++|.+..+|..++.+...++. ++++++++.++++.+|.|..+|..++...
T Consensus 74 ~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 74 VDPKYSKAWSRLGLARFDMAD-YKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999999999999998 79999999999999999999998887543
No 215
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.06 E-value=2.1e-10 Score=98.52 Aligned_cols=125 Identities=6% Similarity=-0.147 Sum_probs=112.9
Q ss_pred HHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy13451 90 KLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIE 169 (522)
Q Consensus 90 ~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~ 169 (522)
..+..++..+|++..+|+.++.++... +++++++..+++++..+|.+..+|...+.+....+. ++++++++++++.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~ 80 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQA---GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL-YEQALQSYSYGAL 80 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHh
Confidence 456777889999999999999999998 999999999999999999999999999999999998 7999999999999
Q ss_pred hcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHH
Q psy13451 170 ANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWL 230 (522)
Q Consensus 170 ~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~l 230 (522)
.+|.|..+|.+++.++..+ +.++++++++++++..+|++...+..+..+
T Consensus 81 ~~p~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 81 MDINEPRFPFHAAECHLQL------------GDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HCTTCTHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 9999999999999999988 889999999999999999998777654443
No 216
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=4.8e-10 Score=110.94 Aligned_cols=93 Identities=17% Similarity=0.271 Sum_probs=83.2
Q ss_pred CCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCccc-EEEcCCCCCCCCCC--CCCCCCCCEE
Q psy13451 410 LVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQ-SLKLTHCSLSSLHV--FPHLPSLESL 478 (522)
Q Consensus 410 l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~-~L~Ls~n~l~~~~~--l~~~~~L~~L 478 (522)
+++|+.+++++|+++.++ .|..+++|+.+++++| ++.++ +.+|+ .+.+.+ .++.++. |.++++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 689999999999999987 5899999999999998 77665 57798 999998 8888875 9999999999
Q ss_pred EccCCCCCCCChhhhcCCCCccEEEe
Q psy13451 479 DVSHNAIDHIEDSVFAKYEACVQVIL 504 (522)
Q Consensus 479 ~Ls~N~l~~~~~~~l~~l~~L~~L~L 504 (522)
++++|.++.++..+|.++++|+.+..
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999999999999999998863
No 217
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.04 E-value=7.4e-12 Score=126.07 Aligned_cols=176 Identities=18% Similarity=0.180 Sum_probs=98.4
Q ss_pred hcccccccCccCcchhhchhhhhhhhcccccCCCCC-cEEEecCCCcccc--cC-cCCCCcccEEEecCCCCCCcccccC
Q psy13451 332 RFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN-QITNLSSLQLTSI--HH-MHCFAHCKQVDLSNNPLTNNCLRHL 407 (522)
Q Consensus 332 ~l~~L~~Ldl~~~~~~~~l~~~~~~~~~l~~l~~~~-~~L~ls~n~l~~l--~~-~~~l~~L~~L~Ls~n~l~~~~~~~~ 407 (522)
..+.|+.|+++++.+.......+... +.. .... +.|++++|.++.. .. ...+++|+.|+|++|.++......+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~--L~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAV--LGS-GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHH--HSS-CSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHH--Hhh-CCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 34567777777776554333322211 111 0122 5777887777652 22 2334567777888877764433333
Q ss_pred -----CCCCCccEEEcCCCCCCCCC------CCCCCCCcCEEEccCCCCCccc----------cCcccEEEcCCCCCCCC
Q psy13451 408 -----TPLVACESLKLTHCSLSSLH------VFPHLPSLESLDVSHNAPNIIL----------CVYFQSLKLTHCSLSSL 466 (522)
Q Consensus 408 -----~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~ls~N~l~~~~----------~~~L~~L~Ls~n~l~~~ 466 (522)
...++|+.|+|++|.|+... .+..+++|++|+|++|.++... +++|+.|+|++|.|++.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 23567777777777776521 2355667777777777776321 35677777777777654
Q ss_pred CC------CCCCCCCCEEEccCCCCCCCChhhhcCCCC-----ccEEE--ecCCCCc
Q psy13451 467 HV------FPHLPSLESLDVSHNAIDHIEDSVFAKYEA-----CVQVI--LTGNPVS 510 (522)
Q Consensus 467 ~~------l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~-----L~~L~--L~~N~l~ 510 (522)
+. +...++|+.|+|++|.|++.....+..+.. |+.+. +.+|.++
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 31 334567777777777777655444433311 55555 5555554
No 218
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.04 E-value=5.3e-10 Score=99.71 Aligned_cols=161 Identities=12% Similarity=0.017 Sum_probs=132.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchh
Q psy13451 28 METIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWF 107 (522)
Q Consensus 28 ~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~ 107 (522)
+.........|++ ++|+..+.+++..+|++..+|...+.++...+. +++++..++.++..+| +..++.
T Consensus 10 ~~~a~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~----------~~~A~~~~~~a~~~~p-~~~~~~ 77 (176)
T 2r5s_A 10 LKQVSELLQQGEH-AQALNVIQTLSDELQSRGDVKLAKADCLLETKQ----------FELAQELLATIPLEYQ-DNSYKS 77 (176)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTC----------HHHHHHHHTTCCGGGC-CHHHHH
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCC----------HHHHHHHHHHhhhccC-ChHHHH
Confidence 3444555667776 889999999999999999999999999999988 7999999999999999 766665
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc--chHhhHHHHHh
Q psy13451 108 QRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN--YSAWHYRSKLL 185 (522)
Q Consensus 108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n--~saW~~r~~ll 185 (522)
....+.... .....+++..++++++.+|.+..+|...+.++...+. ++++++.+.++++.+|.. ..+|...+.++
T Consensus 78 ~~~~~~~~~--~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 78 LIAKLELHQ--QAAESPELKRLEQELAANPDNFELACELAVQYNQVGR-DEEALELLWNILKVNLGAQDGEVKKTFMDIL 154 (176)
T ss_dssp HHHHHHHHH--HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHh--hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccChHHHHHHHHHHH
Confidence 555442211 0122357999999999999999999999999999998 799999999999999976 55999999988
Q ss_pred chhCCCCCCCCccchhHHHHHHHHHHHHHh
Q psy13451 186 PLLYPDPNNHLPIEQDKYVNEFSMVESAVF 215 (522)
Q Consensus 186 ~~l~~~~~~~~~~~~~~~~~el~~~~~ai~ 215 (522)
..+ +..++++..+.+++.
T Consensus 155 ~~~------------g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 155 SAL------------GQGNAIASKYRRQLY 172 (176)
T ss_dssp HHH------------CSSCHHHHHHHHHHH
T ss_pred HHh------------CCCCcHHHHHHHHHH
Confidence 888 555677777777764
No 219
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.03 E-value=6.9e-10 Score=92.84 Aligned_cols=117 Identities=5% Similarity=-0.044 Sum_probs=107.5
Q ss_pred CCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhh
Q psy13451 100 PKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWH 179 (522)
Q Consensus 100 pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~ 179 (522)
|....+|..++..+... +++++++..++++++.+|.+..+|..++.+....+. ++++++.++++++.+|.+..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~ 76 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTK---SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKDPNFVRAYI 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CchHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHH
Confidence 44567888999988888 999999999999999999999999999999999998 79999999999999999999999
Q ss_pred HHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcC------CCCcchhhHHHHHhc
Q psy13451 180 YRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTE------PKDQSAWFYQRWLLG 232 (522)
Q Consensus 180 ~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~------p~~~s~W~y~~~ll~ 232 (522)
.++.++..+ +.++++++.+.+++..+ |.+..++.....+..
T Consensus 77 ~lg~~~~~~------------~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 77 RKATAQIAV------------KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------hCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999988 78999999999999999 999988887766543
No 220
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.02 E-value=2.2e-09 Score=95.06 Aligned_cols=156 Identities=9% Similarity=-0.039 Sum_probs=142.3
Q ss_pred chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC
Q psy13451 58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDE 137 (522)
Q Consensus 58 ~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~ 137 (522)
...+|..++.+....+. +++++..++.++..+|++..+|...+.+.... +++++++..++++++.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~ 73 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGR----------YSQAVMLLEQVYDADAFDVDVALHLGIAYVKT---GAVDRGTELLERSLADAP 73 (186)
T ss_dssp HHHHHHHHHHHHHHHTC----------HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCccChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCC
Confidence 34677778888888777 79999999999999999999999999999988 899999999999999999
Q ss_pred CCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcC
Q psy13451 138 RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTE 217 (522)
Q Consensus 138 kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~ 217 (522)
.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+.... +.++++++++.+++..+
T Consensus 74 ~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~------------~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 74 DNVKVATVLGLTYVQVQK-YDLAVPLLIKVAEANPINFNVRFRLGVALDNL------------GRFDEAIDSFKIALGLR 140 (186)
T ss_dssp TCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc------------CcHHHHHHHHHHHHhcC
Confidence 999999999999999888 79999999999999999999999999988877 78999999999999999
Q ss_pred CCCcchhhHHHHHhccCCCccc
Q psy13451 218 PKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 218 p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
|.+..+|.....+....++...
T Consensus 141 ~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 141 PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHH
Confidence 9999999988888877776554
No 221
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.01 E-value=3.9e-10 Score=116.89 Aligned_cols=133 Identities=12% Similarity=-0.025 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC---------------ccch
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS---------------YGTW 106 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~---------------y~~W 106 (522)
++|++.+..++..+|+...+|+.++.++...+. +++++..+++++..+|.+ ..+|
T Consensus 251 ~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~----------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T 1kt0_A 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK----------YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320 (457)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred ccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence 356777788889999999999999999999888 899999999999999999 6999
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451 107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP 186 (522)
Q Consensus 107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~ 186 (522)
..++.++.++ +++++++..|+++++++|+|..+|..|+.++..++. +++++.++.++++.+|.|..+|..++.+..
T Consensus 321 ~nla~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 321 LNLAMCYLKL---REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE-FESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHh---cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999998 799999999999999999999999999988
Q ss_pred hh
Q psy13451 187 LL 188 (522)
Q Consensus 187 ~l 188 (522)
.+
T Consensus 397 ~~ 398 (457)
T 1kt0_A 397 KA 398 (457)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 222
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=6.2e-10 Score=99.31 Aligned_cols=158 Identities=8% Similarity=-0.080 Sum_probs=130.3
Q ss_pred CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHh
Q psy13451 55 IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLE 134 (522)
Q Consensus 55 np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~ 134 (522)
||.....+..++..+...+. +++++..++.+++.+|++..+|...+.++... +++++++..+++++.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~---g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGE----------HAQALNVIQTLSDELQSRGDVKLAKADCLLET---KQFELAQELLATIPL 68 (176)
T ss_dssp ----CTTHHHHHHHHHHTTC----------HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT---TCHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC---CCHHHHHHHHHHhhh
Confidence 56666777788888888877 79999999999999999999999999999998 999999999999999
Q ss_pred hcCCCcchhhHHHHHHH-hcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHH
Q psy13451 135 LDERNFHCWDYRRYVTD-RHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESA 213 (522)
Q Consensus 135 ~d~kn~~aW~~R~~~l~-~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~a 213 (522)
.+| +...+...+.+.. .... ..++++.++++++.+|.|..+|...+.++... +.++++++.+.++
T Consensus 69 ~~p-~~~~~~~~~~~~~~~~~~-~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~------------g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 69 EYQ-DNSYKSLIAKLELHQQAA-ESPELKRLEQELAANPDNFELACELAVQYNQV------------GRDEEALELLWNI 134 (176)
T ss_dssp GGC-CHHHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHH
T ss_pred ccC-ChHHHHHHHHHHHHhhcc-cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------ccHHHHHHHHHHH
Confidence 999 7665555544422 1111 23578999999999999999999999999888 8899999999999
Q ss_pred HhcCCCC--cchhhHHHHHhccCCCccc
Q psy13451 214 VFTEPKD--QSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 214 i~~~p~~--~s~W~y~~~ll~~~~~~~~ 239 (522)
+..+|+. ..+|.....++...++...
T Consensus 135 l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 135 LKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 9999986 4589888888877766543
No 223
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.00 E-value=1.5e-09 Score=95.52 Aligned_cols=116 Identities=11% Similarity=-0.023 Sum_probs=108.1
Q ss_pred CCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHh
Q psy13451 99 QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAW 178 (522)
Q Consensus 99 ~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW 178 (522)
+++...+|..++.++... +++++++.+++++++.+|.+..+|..++.+....+. +++++++++++++.+|.+..+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 82 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMAR---KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ-HEKAAEDAELATVVDPKYSKAW 82 (164)
T ss_dssp CCHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHH
Confidence 456678899999999988 999999999999999999999999999999999998 7999999999999999999999
Q ss_pred hHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHH
Q psy13451 179 HYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWL 230 (522)
Q Consensus 179 ~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~l 230 (522)
..++.++..+ +.++++++++.+++..+|++..+|..+...
T Consensus 83 ~~lg~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 83 SRLGLARFDM------------ADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHHT------------TCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 9999999988 889999999999999999999999666554
No 224
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.00 E-value=5.6e-10 Score=111.28 Aligned_cols=98 Identities=23% Similarity=0.259 Sum_probs=79.4
Q ss_pred cEEEecCC-CcccccCcCCCCcccEEEecC-CCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451 368 QITNLSSL-QLTSIHHMHCFAHCKQVDLSN-NPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n-~l~~l~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N 443 (522)
..++++++ +|+.+|.+..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++++ .|..+++|+.|+|++|
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 46788888 899998888888999999996 9999777788999999999999999999875 4788999999999999
Q ss_pred CCCccccC-----cccEEEcCCCCCCC
Q psy13451 444 APNIILCV-----YFQSLKLTHCSLSS 465 (522)
Q Consensus 444 ~l~~~~~~-----~L~~L~Ls~n~l~~ 465 (522)
.|+.++.. .|+.|+|++|.+..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCccC
Confidence 88876632 25555555555543
No 225
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=6.5e-09 Score=100.84 Aligned_cols=166 Identities=8% Similarity=0.004 Sum_probs=132.8
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC-----
Q psy13451 34 KRKNQEYDDEALSLTSEVLRNIPD------INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS----- 102 (522)
Q Consensus 34 ~~~~~~~~~eal~~~~~~l~~np~------~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~----- 102 (522)
.+..|.+ ++|++.+.+++.+.++ ...+|+..+.++..++. +++++..+++++...|+.
T Consensus 47 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~----------~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 47 YRLRKEL-NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN----------SVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHTTCT-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHHcCCHHH
Confidence 3445666 8999999999999542 36899999999999988 799999999999988765
Q ss_pred -ccchhhHHHHHHH-hcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc
Q psy13451 103 -YGTWFQRCYVLDH-ISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN 174 (522)
Q Consensus 103 -y~~W~~R~~il~~-l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n 174 (522)
..+|+..+.++.. + +++++++.+++++++++|.+ ..+|...+.+....+. +++++++++++++.+|.+
T Consensus 116 ~a~~~~~lg~~~~~~l---g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 116 GANFKFELGEILENDL---HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ-YIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcC
Confidence 4578888888887 6 89999999999999998876 4578888999999998 799999999999999987
Q ss_pred ch-------HhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhH
Q psy13451 175 YS-------AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFY 226 (522)
Q Consensus 175 ~s-------aW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y 226 (522)
.. +|...+.+...+ +.+++++.++++++.++|+...++..
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAA------------TDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHT------------TCHHHHHHHHHGGGCC---------H
T ss_pred CcccHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 64 456677777766 78999999999999999998876543
No 226
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.99 E-value=3.5e-09 Score=102.54 Aligned_cols=163 Identities=8% Similarity=-0.018 Sum_probs=139.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccc
Q psy13451 26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGT 105 (522)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~ 105 (522)
............|++ ++|+..+.+++..+|++..+|...+.++...++ +++++..++.++..+|.....
T Consensus 119 ~~~~~a~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~----------~~~A~~~l~~~~~~~p~~~~~ 187 (287)
T 3qou_A 119 LXAQQAMQLMQESNY-TDALPLLXDAWQLSNQNGEIGLLLAETLIALNR----------SEDAEAVLXTIPLQDQDTRYQ 187 (287)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC----------HHHHHHHHTTSCGGGCSHHHH
T ss_pred hHHHHHHHHHhCCCH-HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC----------HHHHHHHHHhCchhhcchHHH
Confidence 344555566677777 889999999999999999999999999999998 799999999999999977766
Q ss_pred hhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc--chHhhHHHH
Q psy13451 106 WFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN--YSAWHYRSK 183 (522)
Q Consensus 106 W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n--~saW~~r~~ 183 (522)
+...+..+... ....++++.+.++++.+|.+..+|...+-++...++ ++++++.+.++++.+|.+ ..+|...+.
T Consensus 188 ~~~~~~~l~~~---~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~-~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 188 GLVAQIELLXQ---AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR-NEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHHH---HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHHHHHhh---cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 66666556665 556789999999999999999999999999999998 799999999999999999 889999999
Q ss_pred HhchhCCCCCCCCccchhHHHHHHHHHHHHHh
Q psy13451 184 LLPLLYPDPNNHLPIEQDKYVNEFSMVESAVF 215 (522)
Q Consensus 184 ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~ 215 (522)
++..+ +..+++...+.+++.
T Consensus 264 ~~~~~------------g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAAL------------GTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHH------------CTTCHHHHHHHHHHH
T ss_pred HHHHc------------CCCCcHHHHHHHHHH
Confidence 99888 455666666666653
No 227
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.98 E-value=4.5e-09 Score=90.90 Aligned_cols=99 Identities=10% Similarity=0.118 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc---C
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS---R 118 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~---~ 118 (522)
++|+..+.+++.+||++..+|+..+.++..++......+..+.+++++..++++|+++|++..+|+..+-++..+. |
T Consensus 19 eeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P 98 (158)
T 1zu2_A 19 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTP 98 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCc
Confidence 7789999999999999999999999999998765555556677899999999999999999999999999998760 0
Q ss_pred -----CCChHHHHHHHHHHHhhcCCCc
Q psy13451 119 -----APNYEKELELCNYYLELDERNF 140 (522)
Q Consensus 119 -----~~~~~~el~~~~~~l~~d~kn~ 140 (522)
.+++++++++|+++++++|.|.
T Consensus 99 ~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 99 DETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred chhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 1368888888888888888764
No 228
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.98 E-value=3.2e-11 Score=121.39 Aligned_cols=147 Identities=18% Similarity=0.152 Sum_probs=113.9
Q ss_pred cEEEecCCCccccc-----C-cC-CCCcccEEEecCCCCCCcccccCC-CCCCccEEEcCCCCCCCCC--C----C-CCC
Q psy13451 368 QITNLSSLQLTSIH-----H-MH-CFAHCKQVDLSNNPLTNNCLRHLT-PLVACESLKLTHCSLSSLH--V----F-PHL 432 (522)
Q Consensus 368 ~~L~ls~n~l~~l~-----~-~~-~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~--~----~-~~l 432 (522)
+.|++++|.|+... . +. ..++|+.|+|++|.++......+. .+++|+.|+|++|.|+... . + ...
T Consensus 75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~ 154 (372)
T 3un9_A 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ 154 (372)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence 58999999998632 2 22 347999999999999755444443 4578999999999998642 1 2 356
Q ss_pred CCcCEEEccCCCCCcc----------ccCcccEEEcCCCCCCCCC------CCCCCCCCCEEEccCCCCCCCCh----hh
Q psy13451 433 PSLESLDVSHNAPNII----------LCVYFQSLKLTHCSLSSLH------VFPHLPSLESLDVSHNAIDHIED----SV 492 (522)
Q Consensus 433 ~~L~~L~ls~N~l~~~----------~~~~L~~L~Ls~n~l~~~~------~l~~~~~L~~L~Ls~N~l~~~~~----~~ 492 (522)
++|+.|++++|.++.. ..++|+.|+|++|.|++.+ .+..+++|+.|+|++|.|++... ..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 7899999999999742 2578999999999998743 15667899999999999987543 34
Q ss_pred hcCCCCccEEEecCCCCccccc
Q psy13451 493 FAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 493 l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
+..+++|+.|+|++|+|+....
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHH
T ss_pred HHhCCCCCEEeccCCCCCHHHH
Confidence 5567999999999999985543
No 229
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=5.1e-09 Score=101.40 Aligned_cols=174 Identities=9% Similarity=-0.052 Sum_probs=148.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc
Q psy13451 38 QEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS 117 (522)
Q Consensus 38 ~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~ 117 (522)
|..+.+.+. ..+-..-|+...++...+..+...+. +++++..++.++..+|++..+|...+.++...
T Consensus 98 g~~~~~~l~--~~l~~~lp~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~- 164 (287)
T 3qou_A 98 GPQPEEAIR--ALLDXVLPREEELXAQQAMQLMQESN----------YTDALPLLXDAWQLSNQNGEIGLLLAETLIAL- 164 (287)
T ss_dssp SCCCHHHHH--HHHHHHSCCHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT-
T ss_pred CCCCHHHHH--HHHHHHcCCchhhHHHHHHHHHhCCC----------HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHC-
Confidence 444554333 33334459999999999999999888 79999999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCc
Q psy13451 118 RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLP 197 (522)
Q Consensus 118 ~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~ 197 (522)
+++++++..+++++..+|.+...+...+..+...+. ..++++.+.++++.+|.|..+|...+.++...
T Consensus 165 --g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~-~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~--------- 232 (287)
T 3qou_A 165 --NRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA-DTPEIQQLQQQVAENPEDAALATQLALQLHQV--------- 232 (287)
T ss_dssp --TCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------
T ss_pred --CCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc-cCccHHHHHHHHhcCCccHHHHHHHHHHHHHc---------
Confidence 999999999999999999777666666665656555 57889999999999999999999999999888
Q ss_pred cchhHHHHHHHHHHHHHhcCCCC--cchhhHHHHHhccCCCccc
Q psy13451 198 IEQDKYVNEFSMVESAVFTEPKD--QSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 198 ~~~~~~~~el~~~~~ai~~~p~~--~s~W~y~~~ll~~~~~~~~ 239 (522)
++++++++.+.+++..+|++ ..+|..+.-++...++...
T Consensus 233 ---g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 233 ---GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp ---TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred ---ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 89999999999999999999 8899999999888776443
No 230
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.97 E-value=3.8e-09 Score=93.91 Aligned_cols=128 Identities=10% Similarity=0.044 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHH-HHhcCCCC--HHHH
Q psy13451 85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYV-TDRHKVAP--LKEL 161 (522)
Q Consensus 85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~-l~~~~~~~--~~el 161 (522)
+++++..++.++..+|.+..+|...+.+.... +++++++..++++++.+|.+..+|...+.+ ....+. + ++++
T Consensus 26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~-~~~~~A~ 101 (177)
T 2e2e_A 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQ---NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ-HMTAQTR 101 (177)
T ss_dssp -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-CCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC-cchHHHH
Confidence 67888999999999999999999999999998 999999999999999999999999999999 666676 5 8999
Q ss_pred HHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHH
Q psy13451 162 NYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQR 228 (522)
Q Consensus 162 ~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~ 228 (522)
.+++++++.+|.+..+|...+.+.... +.+++++.++.+++..+|.+...+....
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQ------------ANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc------------ccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 999999999999999999999998887 7899999999999999999987665433
No 231
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=9e-09 Score=97.74 Aligned_cols=157 Identities=10% Similarity=-0.082 Sum_probs=137.1
Q ss_pred HHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC---ccchhhHHHHHHHhcCCCChHHHHHH
Q psy13451 52 LRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS---YGTWFQRCYVLDHISRAPNYEKELEL 128 (522)
Q Consensus 52 l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~---y~~W~~R~~il~~l~~~~~~~~el~~ 128 (522)
..++|+...++..++..+...+. +++++..++.++..+|++ ..+|..++.+.... +++++++..
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~---~~~~~A~~~ 74 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGK----------YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQN---KEYLLAASE 74 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTC----------HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHh---CcHHHHHHH
Confidence 45789999999999999999888 899999999999999999 89999999999999 999999999
Q ss_pred HHHHHhhcCCC---cchhhHHHHHHHh--------cCCCCHHHHHHHHHHHHhcCCcchHh-----------------hH
Q psy13451 129 CNYYLELDERN---FHCWDYRRYVTDR--------HKVAPLKELNYSTEKIEANFSNYSAW-----------------HY 180 (522)
Q Consensus 129 ~~~~l~~d~kn---~~aW~~R~~~l~~--------~~~~~~~el~~~~~~i~~~~~n~saW-----------------~~ 180 (522)
++++++.+|.+ ..+|...+.+... .+. ++++++.++++++.+|.+..++ ..
T Consensus 75 ~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~ 153 (261)
T 3qky_A 75 YERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTD-TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYE 153 (261)
T ss_dssp HHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHH-HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchh-HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998866 4578899999888 666 6899999999999999998888 66
Q ss_pred HHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCc---chhhHHHHHhccC
Q psy13451 181 RSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQ---SAWFYQRWLLGER 234 (522)
Q Consensus 181 r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~---s~W~y~~~ll~~~ 234 (522)
++.+.... +.+++++..+++++..+|++. .+|.+.+.+....
T Consensus 154 la~~~~~~------------g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 154 AARLYERR------------ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHT------------TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc------------cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 67777776 789999999999999999965 4777777766544
No 232
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.95 E-value=4.6e-09 Score=110.83 Aligned_cols=179 Identities=9% Similarity=-0.013 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHH-------hhccccHHHHHHHHHHHHHHHHHHHH-hCCCCccchhhHHHHH
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLH-------MKATLAEEELHELVDRELKLTKDCLL-AQPKSYGTWFQRCYVL 113 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~-------l~~~~~~~~~~~~~~~eL~~~~~~l~-~~pk~y~~W~~R~~il 113 (522)
.+++..++++|..+|.+..+|...+.++.. .+.. +....+.++++..++.+++ .+|++..+|...+.+.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~---~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDM---NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccch---hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 478899999999999999999999999886 3431 1011112489999999997 8999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHhhcCCCc-chhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc-hhCCC
Q psy13451 114 DHISRAPNYEKELELCNYYLELDERNF-HCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP-LLYPD 191 (522)
Q Consensus 114 ~~l~~~~~~~~el~~~~~~l~~d~kn~-~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~-~l~~~ 191 (522)
... ++++++...++++++.+|.+. .+|...+.+..+.+. ++++.+.+.++++..|.++..|...+.+.. ..
T Consensus 332 ~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~--- 404 (530)
T 2ooe_A 332 ESR---MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG-IKSGRMIFKKAREDARTRHHVYVTAALMEYYCS--- 404 (530)
T ss_dssp HHT---TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT---
T ss_pred Hhc---CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC-HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc---
Confidence 998 899999999999999999996 599999998888776 689999999999999988887766555422 22
Q ss_pred CCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCccc
Q psy13451 192 PNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 192 ~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
+.++++...+++++..+|++..+|....-++.+.+....
T Consensus 405 ---------~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 405 ---------KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH
T ss_pred ---------CChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh
Confidence 568999999999999999999999888877777665443
No 233
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=2.5e-08 Score=82.89 Aligned_cols=135 Identities=16% Similarity=0.256 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC
Q psy13451 60 SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERN 139 (522)
Q Consensus 60 t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn 139 (522)
.+|+..+.++...+. +++++..++.++..+|.+..+|...+.+.... +++++++..+++++..+|.+
T Consensus 2 ~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~ 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGD----------YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPRS 68 (136)
T ss_dssp HHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHcCc----------HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh---cCHHHHHHHHHHHHHHCCCc
Confidence 468888888888777 79999999999999999999999999999888 89999999999999999999
Q ss_pred cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCC
Q psy13451 140 FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPK 219 (522)
Q Consensus 140 ~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~ 219 (522)
..+|...+.+....+. +++++++++++++.+|.+..+|...+.+.... +.++++++++.+++..+|+
T Consensus 69 ~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~------------~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ------------GDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT------------TCHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH------------ccHHHHHHHHHHHHccCCC
Confidence 9999999999999887 79999999999999999999999998888776 7899999999999999986
Q ss_pred C
Q psy13451 220 D 220 (522)
Q Consensus 220 ~ 220 (522)
+
T Consensus 136 ~ 136 (136)
T 2fo7_A 136 S 136 (136)
T ss_dssp C
T ss_pred C
Confidence 4
No 234
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.94 E-value=2.8e-08 Score=104.85 Aligned_cols=174 Identities=8% Similarity=-0.054 Sum_probs=147.4
Q ss_pred cCCCC------HHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc-cchhh
Q psy13451 37 NQEYD------DEALSLTSEVLR-NIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY-GTWFQ 108 (522)
Q Consensus 37 ~~~~~------~eal~~~~~~l~-~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y-~~W~~ 108 (522)
.|+++ ++|.+.+++++. ++|++..+|.....+....+. ++++...++++++.+|++. .+|..
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~ 361 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK----------YEKVHSIYNRLLAIEDIDPTLVYIQ 361 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHSSSSCHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhCccccCchHHHHH
Confidence 56664 489999999997 899999999999999999887 7999999999999999986 59999
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHH-HhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhch
Q psy13451 109 RCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVT-DRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPL 187 (522)
Q Consensus 109 R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l-~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~ 187 (522)
.+.++.+. ++++++.+.++++++..|.+++.|.-.+++. ...+. .+++...++++++.+|.+..+|...+.+...
T Consensus 362 ~~~~~~~~---~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~-~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~ 437 (530)
T 2ooe_A 362 YMKFARRA---EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 437 (530)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHh---cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 99998888 7889999999999999999999888777663 23555 6899999999999999999999988887776
Q ss_pred hCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcc----hhhHHHHHhccCCC
Q psy13451 188 LYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQS----AWFYQRWLLGERTS 236 (522)
Q Consensus 188 l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s----~W~y~~~ll~~~~~ 236 (522)
. +..+++...+++++...|.+.. +|....-.....+.
T Consensus 438 ~------------g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 438 L------------NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp T------------TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred C------------CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 6 7789999999999999877655 88543333333343
No 235
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=7.6e-09 Score=99.85 Aligned_cols=175 Identities=13% Similarity=0.073 Sum_probs=136.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451 27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW 106 (522)
Q Consensus 27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W 106 (522)
+..........|++ ++|+..+.+++.++|++..+|..++.++..++. +++++..++++++.+|.+..+|
T Consensus 7 ~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~ 75 (281)
T 2c2l_A 7 LKEQGNRLFVGRKY-PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ----------PEQALADCRRALELDGQSVKAH 75 (281)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHTTSCTTCHHHH
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCCHHHH
Confidence 34445566677777 889999999999999999999999999999988 7999999999999999999999
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451 107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP 186 (522)
Q Consensus 107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~ 186 (522)
+.++.++..+ +++++++..+.++++.+|.+........|..... .+...+........+.+.....+.+.++.
T Consensus 76 ~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~l~~l~~ 148 (281)
T 2c2l_A 76 FFLGQCQLEM---ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI----AKKKRWNSIEERRIHQESELHSYLTRLIA 148 (281)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH----HHHHHHHHHHHTCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999998 8999999999999999998765544333333321 22333333444567777777777766552
Q ss_pred hhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451 187 LLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233 (522)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~ 233 (522)
+.++++++.+..|+..+|+|.....-..-+..+
T Consensus 149 --------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 181 (281)
T 2c2l_A 149 --------------AERERELEECQRNHEGHEDDGHIRAQQACIEAK 181 (281)
T ss_dssp --------------HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHhhhccccchhhhhhHHHHHHHH
Confidence 688999999999999999887666555444433
No 236
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.92 E-value=7.3e-09 Score=92.04 Aligned_cols=127 Identities=11% Similarity=0.071 Sum_probs=114.4
Q ss_pred cCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHH-HHH
Q psy13451 37 NQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYV-LDH 115 (522)
Q Consensus 37 ~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~i-l~~ 115 (522)
.|++ ++|+..+.+++..+|++..+|...+.++...+. +++++..++.+++.+|.+..+|...+.+ ...
T Consensus 23 ~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~ 91 (177)
T 2e2e_A 23 QQNP-EAQLQALQDKIRANPQNSEQWALLGEYYLWQND----------YSNSLLAYRQALQLRGENAELYAALATVLYYQ 91 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred ccCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 3444 668999999999999999999999999999888 7999999999999999999999999999 556
Q ss_pred hcCCCCh--HHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHh
Q psy13451 116 ISRAPNY--EKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAW 178 (522)
Q Consensus 116 l~~~~~~--~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW 178 (522)
. +++ ++++..++++++.+|.+..+|...+.+....+. ++++++++.++++.+|.+...+
T Consensus 92 ~---~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 92 A---SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN-YAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp T---TTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTCCTTSCHH
T ss_pred c---CCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc-HHHHHHHHHHHHhhCCCCccHH
Confidence 6 666 999999999999999999999999999999988 7999999999999999997654
No 237
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.90 E-value=4e-10 Score=120.68 Aligned_cols=147 Identities=10% Similarity=0.058 Sum_probs=111.2
Q ss_pred cEEEecC-----------CCccc--ccC-cCCCCcccEEEecCCCCCCcccccCCC-CCCccEEEcC----CCCCCCCC-
Q psy13451 368 QITNLSS-----------LQLTS--IHH-MHCFAHCKQVDLSNNPLTNNCLRHLTP-LVACESLKLT----HCSLSSLH- 427 (522)
Q Consensus 368 ~~L~ls~-----------n~l~~--l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~- 427 (522)
+.|++++ +.++. ++. ...+++|+.|+++.|.+++..+..+.. +++|+.|+++ .|.+++.|
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 5888883 46664 333 456889999999999998776666655 8899999996 66787753
Q ss_pred ------CCCCCCCcCEEEccCCC--CCcc-------ccCcccEEEcCCCCCCCCC--C-CCCCCCCCEEEccCCCCCCCC
Q psy13451 428 ------VFPHLPSLESLDVSHNA--PNII-------LCVYFQSLKLTHCSLSSLH--V-FPHLPSLESLDVSHNAIDHIE 489 (522)
Q Consensus 428 ------~~~~l~~L~~L~ls~N~--l~~~-------~~~~L~~L~Ls~n~l~~~~--~-l~~~~~L~~L~Ls~N~l~~~~ 489 (522)
.+..+++|+.|++++|. ++.. .+++|+.|++++|.+++.. . +..+++|+.|+|++|.+++..
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 504 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence 14568899999997543 5421 1678999999999988633 2 577899999999999987643
Q ss_pred -hhhhcCCCCccEEEecCCCCccccc
Q psy13451 490 -DSVFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 490 -~~~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
+..+..+++|+.|+|++|+++....
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred HHHHHHhcCccCeeECcCCcCCHHHH
Confidence 3345678999999999999986643
No 238
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.87 E-value=1.2e-08 Score=84.89 Aligned_cols=103 Identities=3% Similarity=-0.058 Sum_probs=91.6
Q ss_pred ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHH
Q psy13451 103 YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS 182 (522)
Q Consensus 103 y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~ 182 (522)
...|..++.++... +++++++..++++++.+|++..+|...+.+....+. +++++..++++++.+|.+..+|...+
T Consensus 17 ~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~~la 92 (121)
T 1hxi_A 17 HENPMEEGLSMLKL---ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-DGLAIIALNHARMLDPKDIAVHAALA 92 (121)
T ss_dssp CSCHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35688888888888 899999999999999999999999999999999998 79999999999999999999999999
Q ss_pred HHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCc
Q psy13451 183 KLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQ 221 (522)
Q Consensus 183 ~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~ 221 (522)
.++... +.++++++.+.+++..+|++.
T Consensus 93 ~~~~~~------------g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 93 VSHTNE------------HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHH------------HHHHHHHHHHHHHHC------
T ss_pred HHHHHc------------CCHHHHHHHHHHHHHhCcCCC
Confidence 999988 899999999999999999875
No 239
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=4e-08 Score=91.16 Aligned_cols=155 Identities=8% Similarity=-0.048 Sum_probs=131.5
Q ss_pred hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc---cchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451 59 NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY---GTWFQRCYVLDHISRAPNYEKELELCNYYLEL 135 (522)
Q Consensus 59 ~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y---~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~ 135 (522)
..++..++..+...+. +++++..++.++..+|.+. .+|..++.+.... +++++++..++++++.
T Consensus 4 ~~~~~~~a~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~---~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGN----------WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN---ADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHH
Confidence 4678888888888887 7999999999999999885 6899999999998 9999999999999999
Q ss_pred cCCCcc---hhhHHHHHHHhc------------------CCCCHHHHHHHHHHHHhcCCcchHhhH--------------
Q psy13451 136 DERNFH---CWDYRRYVTDRH------------------KVAPLKELNYSTEKIEANFSNYSAWHY-------------- 180 (522)
Q Consensus 136 d~kn~~---aW~~R~~~l~~~------------------~~~~~~el~~~~~~i~~~~~n~saW~~-------------- 180 (522)
+|++.. +|.+++.+.... +. +++++..++++++.+|.+..+|.-
T Consensus 71 ~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 71 NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQ-ARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHC--------------CCHH-HHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHH-HHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 999987 899999887652 22 578999999999999999988843
Q ss_pred ---HHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCc---chhhHHHHHhccCCCccc
Q psy13451 181 ---RSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQ---SAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 181 ---r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~---s~W~y~~~ll~~~~~~~~ 239 (522)
.+.+.... +.+++++..+++++..+|++. .+|.+++.+..+.+....
T Consensus 150 ~~~~a~~~~~~------------~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 150 EYSVAEYYTER------------GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp HHHHHHHHHHH------------TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHc------------CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 33333333 789999999999999999986 579888888888887654
No 240
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.86 E-value=1.1e-07 Score=78.97 Aligned_cols=127 Identities=18% Similarity=0.280 Sum_probs=115.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHH
Q psy13451 33 EKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYV 112 (522)
Q Consensus 33 ~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~i 112 (522)
.....|++ ++|+..+.+++..+|++..+|...+.+....+. +++++..++.++..+|.+..+|...+.+
T Consensus 10 ~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 10 AYYKQGDY-DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD----------YDEAIEYYQKALELDPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCcH-HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 33445555 789999999999999999999999999888877 7999999999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc
Q psy13451 113 LDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN 174 (522)
Q Consensus 113 l~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n 174 (522)
.... +++++++..++++++.+|.+..+|...+.+....+. ++++++++.++++.+|.+
T Consensus 79 ~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 79 YYKQ---GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHSTTC
T ss_pred HHHh---cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc-HHHHHHHHHHHHccCCCC
Confidence 8888 899999999999999999999999999999999887 799999999999998864
No 241
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.85 E-value=2.9e-08 Score=98.40 Aligned_cols=132 Identities=12% Similarity=-0.010 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHhhccccHHHHHHHHHHH
Q psy13451 24 YHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDI---------------NSLWNYRKEVLLHMKATLAEEELHELVDRE 88 (522)
Q Consensus 24 y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~---------------~t~wn~R~~~l~~l~~~~~~~~~~~~~~~e 88 (522)
..............|++ ++|+..+.+++.++|++ ..+|+.++.++..++. ++++
T Consensus 147 a~~~~~~g~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~----------~~~A 215 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKY-KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA----------FSAA 215 (336)
T ss_dssp HHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC----------HHHH
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC----------HHHH
Confidence 33444555566677777 88999999999999999 6999999999999998 7999
Q ss_pred HHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHH
Q psy13451 89 LKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKI 168 (522)
Q Consensus 89 L~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i 168 (522)
+..+++++..+|++..+|+.++.++..+ +++++++..++++++++|.|..+|...+.+...++...+.+-..+.+++
T Consensus 216 ~~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 216 IESCNKALELDSNNEKGLSRRGEAHLAV---NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 9999999999999999999999999999999988763233345555555
Q ss_pred H
Q psy13451 169 E 169 (522)
Q Consensus 169 ~ 169 (522)
.
T Consensus 293 ~ 293 (336)
T 1p5q_A 293 E 293 (336)
T ss_dssp H
T ss_pred H
Confidence 3
No 242
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=7.4e-08 Score=83.78 Aligned_cols=135 Identities=10% Similarity=0.012 Sum_probs=116.9
Q ss_pred chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC
Q psy13451 58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDE 137 (522)
Q Consensus 58 ~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~ 137 (522)
...+|...+.+....+. +++++..++.++..+|++..+|..++.+.... +++++++..++++++.+|
T Consensus 12 ~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 12 RAEELKTQANDYFKAKD----------YENAIKFYSQAIELNPSNAIYYGNRSLAYLRT---ECYGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCc
Confidence 34678888888888777 79999999999999999999999999999998 999999999999999999
Q ss_pred CCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhc
Q psy13451 138 RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFT 216 (522)
Q Consensus 138 kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~ 216 (522)
.+..+|...+.+....+. +++++++++++++.+|.+..+|.+...+...+ ..+.++++++.+.++...
T Consensus 79 ~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~----------~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGK-FRAALRDYETVVKVKPHDKDAKMKYQECNKIV----------KQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------HHHHHHHHHHcccchHHH
Confidence 999999999999999998 79999999999999999999996655553222 127888888887776543
No 243
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=1e-08 Score=85.58 Aligned_cols=120 Identities=8% Similarity=0.005 Sum_probs=109.4
Q ss_pred hCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchH
Q psy13451 98 AQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA 177 (522)
Q Consensus 98 ~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~sa 177 (522)
..|.+..+|..++.+.... +++++++.+++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQK---GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE-FQLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHT---TCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTC-HHHHHHHHHHHHHHCTTCHHH
T ss_pred cCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCchHH
Confidence 3577788999999999888 899999999999999999999999999999998887 799999999999999999999
Q ss_pred hhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451 178 WHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233 (522)
Q Consensus 178 W~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~ 233 (522)
|...+.+.... +.++++++++.+++..+|.+..+|.....++..
T Consensus 87 ~~~la~~~~~~------------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 87 YTRKAAALEAM------------KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHT------------TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 99999999887 789999999999999999999999887766543
No 244
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=2.4e-08 Score=83.34 Aligned_cols=120 Identities=11% Similarity=0.138 Sum_probs=111.3
Q ss_pred CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHh
Q psy13451 55 IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLE 134 (522)
Q Consensus 55 np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~ 134 (522)
.|....+|..++.++...+. +++++..++.++..+|++..+|..++.++... +++++++.+++++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGD----------YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL---LEFQLALKDCEECIQ 78 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTC----------SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTT---TCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh---ccHHHHHHHHHHHHH
Confidence 57888999999999999887 69999999999999999999999999999888 899999999999999
Q ss_pred hcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451 135 LDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL 188 (522)
Q Consensus 135 ~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l 188 (522)
.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+....
T Consensus 79 ~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 79 LEPTFIKGYTRKAAALEAMKD-YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 999999999999999999988 79999999999999999999998887766543
No 245
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=8.3e-08 Score=83.43 Aligned_cols=129 Identities=11% Similarity=0.093 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccc
Q psy13451 26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGT 105 (522)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~ 105 (522)
.+..........|++ ++|+..+.+++.++|++..+|..++.++...+. +++++..++.++..+|++..+
T Consensus 15 ~~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 15 ELKTQANDYFKAKDY-ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC----------YGYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCcccHHH
Confidence 444555566677777 889999999999999999999999999999888 799999999999999999999
Q ss_pred hhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHH--HHhcCCCCHHHHHHHHHHHH
Q psy13451 106 WFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYV--TDRHKVAPLKELNYSTEKIE 169 (522)
Q Consensus 106 W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~--l~~~~~~~~~el~~~~~~i~ 169 (522)
|...+.++... +++++++..++++++.+|.+..+|.+.+.+ ....+. ++++++.+.+...
T Consensus 84 ~~~~a~~~~~~---~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~ 145 (166)
T 1a17_A 84 YYRRAASNMAL---GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHcccchHH
Confidence 99999999999 899999999999999999999999766555 433344 4666666655543
No 246
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.83 E-value=4.3e-08 Score=104.36 Aligned_cols=141 Identities=9% Similarity=-0.109 Sum_probs=128.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451 27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW 106 (522)
Q Consensus 27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W 106 (522)
...........|++ ++|++.+.+++.++|++..+|...+.++...+. +++++..++++++.+|++..+|
T Consensus 26 ~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~ 94 (568)
T 2vsy_A 26 WLMLADAELGMGDT-TAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR----------HAEAAVLLQQASDAAPEHPGIA 94 (568)
T ss_dssp HHHHHHHHHHHTCH-HHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCCCCHHHH
Confidence 33444455566766 889999999999999999999999999999988 7999999999999999999999
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc---CCCCHHHHHHHHHHHHhcCCcchHhhHHH
Q psy13451 107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRH---KVAPLKELNYSTEKIEANFSNYSAWHYRS 182 (522)
Q Consensus 107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~---~~~~~~el~~~~~~i~~~~~n~saW~~r~ 182 (522)
...+.++... ++++++++.++++++.+|.+..+|...+.+.... +. ++++++.++++++.+|.+.++|+..+
T Consensus 95 ~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 95 LWLGHALEDA---GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA-LDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT-HHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc-HHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999 9999999999999999999999999999999999 77 68999999999999999999987644
No 247
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.83 E-value=2.2e-08 Score=87.68 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh------------------CCCchHHHHHHHHHHHHhhccccHHHHH
Q psy13451 21 VKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRN------------------IPDINSLWNYRKEVLLHMKATLAEEELH 82 (522)
Q Consensus 21 ~~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~------------------np~~~t~wn~R~~~l~~l~~~~~~~~~~ 82 (522)
++.-..+.+........|.| ++|+..+.++|.+ +|....+|..++.++..++.
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-------- 78 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDY-KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD-------- 78 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc--------
Confidence 44444556667777788888 8899999999999 77778888888888888877
Q ss_pred HHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc-chhhHHHHHHH
Q psy13451 83 ELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNF-HCWDYRRYVTD 151 (522)
Q Consensus 83 ~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~-~aW~~R~~~l~ 151 (522)
+++++..++.+|..+|.+..+|+.++.++..+ +++++++..++++++++|.|. .++...+.+..
T Consensus 79 --~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 79 --LHEAEETSSEVLKREETNEKALFRRAKARIAA---WKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp --HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH---hcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 68888888888888888888888888888888 888888888888888888877 44444444433
No 248
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.82 E-value=2.5e-08 Score=83.03 Aligned_cols=96 Identities=11% Similarity=0.007 Sum_probs=59.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451 31 IFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC 110 (522)
Q Consensus 31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~ 110 (522)
.......|++ ++|+..+.+++.++|++..+|..++.++...+. +++++..++++++.+|.+..+|...+
T Consensus 24 g~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~l~P~~~~~~~~la 92 (121)
T 1hxi_A 24 GLSMLKLANL-AEAALAFEAVCQKEPEREEAWRSLGLTQAENEK----------DGLAIIALNHARMLDPKDIAVHAALA 92 (121)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3344445554 566666666666666666666666666666665 56666666666666666666666666
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhhcCCCc
Q psy13451 111 YVLDHISRAPNYEKELELCNYYLELDERNF 140 (522)
Q Consensus 111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~ 140 (522)
.++... +++++++..++++++.+|.+.
T Consensus 93 ~~~~~~---g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 93 VSHTNE---HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHC------
T ss_pred HHHHHc---CCHHHHHHHHHHHHHhCcCCC
Confidence 666666 666666666666666666543
No 249
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=1.1e-07 Score=86.62 Aligned_cols=131 Identities=11% Similarity=-0.012 Sum_probs=117.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchh
Q psy13451 28 METIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWF 107 (522)
Q Consensus 28 ~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~ 107 (522)
+.........|++ ++|+..+.+++ +| +..+|+.++.++...+. +++++..++.++..+|++..+|.
T Consensus 10 ~~~g~~~~~~~~~-~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~ 75 (213)
T 1hh8_A 10 WNEGVLAADKKDW-KGALDAFSAVQ--DP-HSRICFNIGCMYTILKN----------MTEAEKAFTRSINRDKHLAVAYF 75 (213)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCH-HHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCccchHHHH
Confidence 3445555667777 78999999995 44 67899999999999988 79999999999999999999999
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc----------------chhhHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q psy13451 108 QRCYVLDHISRAPNYEKELELCNYYLELDERNF----------------HCWDYRRYVTDRHKVAPLKELNYSTEKIEAN 171 (522)
Q Consensus 108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~----------------~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~ 171 (522)
.++.++... +++++++..++++++.+|.+. .+|..++.+....+. +++++++++++++.+
T Consensus 76 ~lg~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 76 QRGMLYYQT---EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHc---ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC-HHHHHHHHHHHHHcC
Confidence 999999999 999999999999999999888 999999999999998 799999999999999
Q ss_pred CCcch
Q psy13451 172 FSNYS 176 (522)
Q Consensus 172 ~~n~s 176 (522)
|.+..
T Consensus 152 p~~~~ 156 (213)
T 1hh8_A 152 SEPRH 156 (213)
T ss_dssp CSGGG
T ss_pred ccccc
Confidence 98743
No 250
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=4.2e-08 Score=81.23 Aligned_cols=122 Identities=8% Similarity=0.072 Sum_probs=112.2
Q ss_pred HhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHH
Q psy13451 53 RNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYY 132 (522)
Q Consensus 53 ~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~ 132 (522)
..+|....+|...+.+....+. +++++..++.++..+|++..+|..++.+.... +++++++.+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~ 72 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVEN----------FEAAVHFYGKAIELNPANAVYFCNRAAAYSKL---GNYAGAVQDCERA 72 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---hchHHHHHHHHHH
Confidence 3456778899999999988887 79999999999999999999999999999998 9999999999999
Q ss_pred HhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451 133 LELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL 188 (522)
Q Consensus 133 l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l 188 (522)
++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|...+.+...+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 73 ICIDPAYSKAYGRMGLALSSLNK-HVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HhcCccCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 99999999999999999999988 79999999999999999999999988877665
No 251
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=1.4e-08 Score=84.19 Aligned_cols=123 Identities=11% Similarity=0.021 Sum_probs=111.0
Q ss_pred hCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchH
Q psy13451 98 AQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA 177 (522)
Q Consensus 98 ~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~sa 177 (522)
.+|+...+|...+.+.... +++++++..++++++.+|.+..+|...+.+....+. ++++++++.++++.+|.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~ 82 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKV---ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGN-YAGAVQDCERAICIDPAYSKA 82 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHH
T ss_pred cchhhhHHHHHHHHHHHHc---cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhc-hHHHHHHHHHHHhcCccCHHH
Confidence 3456677888888888887 899999999999999999999999999999999888 799999999999999999999
Q ss_pred hhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCC
Q psy13451 178 WHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTS 236 (522)
Q Consensus 178 W~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~ 236 (522)
|...+.+.... +.+++++.++.+++..+|++..+|.....+....++
T Consensus 83 ~~~~~~~~~~~------------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 83 YGRMGLALSSL------------NKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHT------------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh------------CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 99999998887 789999999999999999999999888877765543
No 252
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=5e-08 Score=89.07 Aligned_cols=135 Identities=7% Similarity=-0.059 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc
Q psy13451 61 LWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNF 140 (522)
Q Consensus 61 ~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~ 140 (522)
.++.++.++...+. +++++..++.++ +| +..+|..++.+.... +++++++..++++++.+|.+.
T Consensus 8 ~~~~~g~~~~~~~~----------~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~ 71 (213)
T 1hh8_A 8 SLWNEGVLAADKKD----------WKGALDAFSAVQ--DP-HSRICFNIGCMYTIL---KNMTEAEKAFTRSINRDKHLA 71 (213)
T ss_dssp HHHHHHHHHHHTTC----------HHHHHHHHHTSS--SC-CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCC----------HHHHHHHHHHHc--CC-ChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCccch
Confidence 45667777777776 789999999886 33 778999999999998 999999999999999999999
Q ss_pred chhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc----------------hHhhHHHHHhchhCCCCCCCCccchhHHH
Q psy13451 141 HCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY----------------SAWHYRSKLLPLLYPDPNNHLPIEQDKYV 204 (522)
Q Consensus 141 ~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~----------------saW~~r~~ll~~l~~~~~~~~~~~~~~~~ 204 (522)
.+|..++.+....+. +++++++++++++.+|.|. .+|.+++.+.... +.++
T Consensus 72 ~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------g~~~ 138 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK------------EEWK 138 (213)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT------------TCHH
T ss_pred HHHHHHHHHHHHccc-HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHc------------cCHH
Confidence 999999999999998 7999999999999998887 9999999999888 7899
Q ss_pred HHHHHHHHHHhcCCCCcchh
Q psy13451 205 NEFSMVESAVFTEPKDQSAW 224 (522)
Q Consensus 205 ~el~~~~~ai~~~p~~~s~W 224 (522)
++++++.+++..+|++....
T Consensus 139 ~A~~~~~~al~~~p~~~~~~ 158 (213)
T 1hh8_A 139 KAEEQLALATSMKSEPRHSK 158 (213)
T ss_dssp HHHHHHHHHHTTCCSGGGGH
T ss_pred HHHHHHHHHHHcCcccccch
Confidence 99999999999999886543
No 253
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.79 E-value=2.2e-08 Score=84.49 Aligned_cols=119 Identities=9% Similarity=-0.026 Sum_probs=106.5
Q ss_pred HhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcch
Q psy13451 97 LAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176 (522)
Q Consensus 97 ~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~s 176 (522)
..+|.+..+|...+.+.... +++++++..+.++++.+|.+..+|..++.+....+. +++++.+++++++.+|.+..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~ 78 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVG---RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVK 78 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHH
T ss_pred CCccccHHHHHHHHHHHHHh---CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCchhHH
Confidence 35788899999999999998 999999999999999999999999999999999988 79999999999999999999
Q ss_pred HhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCC-----CcchhhHHHHHh
Q psy13451 177 AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPK-----DQSAWFYQRWLL 231 (522)
Q Consensus 177 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~-----~~s~W~y~~~ll 231 (522)
+|...+.+...+ +.++++++++.+++..+|+ +..+|...+.+.
T Consensus 79 ~~~~l~~~~~~~------------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 79 AHFFLGQCQLEM------------ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------------hhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 999999999888 7899999999999999999 666666655544
No 254
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.79 E-value=3.2e-08 Score=102.42 Aligned_cols=119 Identities=10% Similarity=-0.005 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHhhccccHHHHHHHHHH
Q psy13451 23 WYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDI---------------NSLWNYRKEVLLHMKATLAEEELHELVDR 87 (522)
Q Consensus 23 ~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~---------------~t~wn~R~~~l~~l~~~~~~~~~~~~~~~ 87 (522)
...............|+| ++|+..+.++|.++|++ ..+|+.++.++..++. +++
T Consensus 267 ~a~~~~~~G~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~----------~~~ 335 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKY-MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE----------YTK 335 (457)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC----------HHH
T ss_pred HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC----------HHH
Confidence 334455556667777877 88999999999999999 7999999999999998 799
Q ss_pred HHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCC
Q psy13451 88 ELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155 (522)
Q Consensus 88 eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~ 155 (522)
++..++++|..+|++..+|+.|+.++..+ +++++++..++++++++|.|..+|..++.+...++.
T Consensus 336 A~~~~~~al~~~p~~~~a~~~~g~a~~~~---g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 336 AVECCDKALGLDSANEKGLYRRGEAQLLM---NEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999999999999988765
No 255
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.79 E-value=5.2e-08 Score=82.13 Aligned_cols=107 Identities=9% Similarity=-0.008 Sum_probs=100.4
Q ss_pred HhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHH
Q psy13451 53 RNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYY 132 (522)
Q Consensus 53 ~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~ 132 (522)
..+|....+|...+.++...+. +++++..+..++..+|++..+|..++.++... +++++++..++++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a 69 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRK----------YPEAAACYGRAITRNPLVAVYYTNRALCYLKM---QQPEQALADCRRA 69 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCc----------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh---cCHHHHHHHHHHH
Confidence 4678899999999999999888 79999999999999999999999999999999 9999999999999
Q ss_pred HhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q psy13451 133 LELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFS 173 (522)
Q Consensus 133 l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~ 173 (522)
++.+|.+..+|...+.+....+. ++++++++.++++.+|.
T Consensus 70 l~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 70 LELDGQSVKAHFFLGQCQLEMES-YDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHChh
Confidence 99999999999999999999998 79999999999999998
No 256
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.79 E-value=1.5e-08 Score=100.46 Aligned_cols=137 Identities=10% Similarity=-0.006 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCch-----------------HHHHHHHHHHHHhhccccHHHHHHHHHH
Q psy13451 25 HNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDIN-----------------SLWNYRKEVLLHMKATLAEEELHELVDR 87 (522)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~-----------------t~wn~R~~~l~~l~~~~~~~~~~~~~~~ 87 (522)
.............|++ ++|+..+.+++.++|++. .+|+.++.++..++. +++
T Consensus 180 ~~~~~~g~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~----------~~~ 248 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKL-EEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR----------YDE 248 (338)
T ss_dssp HHHHHHHHHTCSSSCC-HHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC----------CHH
T ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC----------HHH
Confidence 3444556666677777 889999999999999987 488999999988887 689
Q ss_pred HHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHH
Q psy13451 88 ELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEK 167 (522)
Q Consensus 88 eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~ 167 (522)
++..++.+|..+|++..+|+.++.++..+ +++++++..+.++++++|.|..+|...+.+........+++.+.+.++
T Consensus 249 A~~~~~~al~~~p~~~~a~~~lg~a~~~~---g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 249 AIGHCNIVLTEEEKNPKALFRRGKAKAEL---GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTT---TCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888 889999999999999999999999888877665554456777788888
Q ss_pred HHhcCCcc
Q psy13451 168 IEANFSNY 175 (522)
Q Consensus 168 i~~~~~n~ 175 (522)
+..+|.+-
T Consensus 326 l~~~p~~~ 333 (338)
T 2if4_A 326 FKGKDEGG 333 (338)
T ss_dssp --------
T ss_pred hCCCCCCC
Confidence 88888764
No 257
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.76 E-value=6.1e-09 Score=100.63 Aligned_cols=181 Identities=13% Similarity=0.146 Sum_probs=145.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh
Q psy13451 27 LMETIFEKRKNQEYDDEALSLTSEVLRN--------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA 98 (522)
Q Consensus 27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~--------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~ 98 (522)
+..........|++ ++|+..+.+++.+ +|....+|...+.++...+. +++++..++.++..
T Consensus 30 ~~~l~~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 30 LHNLVIQYASQGRY-EVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK----------YKDAANLLNDALAI 98 (311)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHH
Confidence 33444455666766 8899999999995 78889999999999999887 67788888888776
Q ss_pred --------CCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhc--------CCCcchhhHHHHHHHhcCCCCHHHHH
Q psy13451 99 --------QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELD--------ERNFHCWDYRRYVTDRHKVAPLKELN 162 (522)
Q Consensus 99 --------~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d--------~kn~~aW~~R~~~l~~~~~~~~~el~ 162 (522)
+|....+|...+.+.... +++++++.+++++++.. |....+|...+.+....+. ++++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~ 174 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKR---GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK-YEEVEY 174 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHc---CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 467788999999999888 89999999999999874 6777889999999999888 799999
Q ss_pred HHHHHHHh--------cCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhc---------CCCCcchhh
Q psy13451 163 YSTEKIEA--------NFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFT---------EPKDQSAWF 225 (522)
Q Consensus 163 ~~~~~i~~--------~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~---------~p~~~s~W~ 225 (522)
+++++++. +|....+|...+.+.... +.++++++++.+++.. +|.+...|.
T Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ------------GKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 99999998 788888899999988887 7899999999999964 455666666
Q ss_pred HHHHHhccC
Q psy13451 226 YQRWLLGER 234 (522)
Q Consensus 226 y~~~ll~~~ 234 (522)
....+....
T Consensus 243 ~~~~~~~~~ 251 (311)
T 3nf1_A 243 HAEEREECK 251 (311)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 555554433
No 258
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.76 E-value=3.5e-08 Score=79.44 Aligned_cols=108 Identities=10% Similarity=0.153 Sum_probs=101.7
Q ss_pred hCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHH
Q psy13451 54 NIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYL 133 (522)
Q Consensus 54 ~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l 133 (522)
++|++..+|..++.+....+. +++++..+++++..+|.+..+|..++.++... +++++++.++++++
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGN----------YTESIDLFEKAIQLDPEESKYWLMKGKALYNL---ERYEEAVDCYNYVI 67 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCC----------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHH
Confidence 479999999999999998887 79999999999999999999999999999998 89999999999999
Q ss_pred hhcCC--CcchhhHHHHHHHhc-CCCCHHHHHHHHHHHHhcCCcc
Q psy13451 134 ELDER--NFHCWDYRRYVTDRH-KVAPLKELNYSTEKIEANFSNY 175 (522)
Q Consensus 134 ~~d~k--n~~aW~~R~~~l~~~-~~~~~~el~~~~~~i~~~~~n~ 175 (522)
+.+|. +..+|...+.+.... +. ++++++++.+++..+|.+.
T Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 68 NVIEDEYNKDVWAAKADALRYIEGK-EVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTSCCTTCHHHHHHHHHHHTTCSSC-SHHHHHHHHHHGGGCCCCC
T ss_pred HhCcccchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHhhcccCCC
Confidence 99999 999999999999999 88 7999999999999999764
No 259
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.75 E-value=4.8e-08 Score=85.46 Aligned_cols=117 Identities=9% Similarity=-0.079 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh------------------CCCCccchhhHHHHHHHhcCC
Q psy13451 58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA------------------QPKSYGTWFQRCYVLDHISRA 119 (522)
Q Consensus 58 ~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~------------------~pk~y~~W~~R~~il~~l~~~ 119 (522)
...+|..++..+...+. +++++..+..++.. +|....+|..++.++..+
T Consensus 10 ~a~~~~~~G~~~~~~~~----------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--- 76 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKD----------YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI--- 76 (162)
T ss_dssp HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 45678888988888887 79999999999998 888889999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc-hHhhHHHHHhchh
Q psy13451 120 PNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY-SAWHYRSKLLPLL 188 (522)
Q Consensus 120 ~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~-saW~~r~~ll~~l 188 (522)
+++++++..|+++++++|.+..+|..++.+...++. ++++++++.++++.+|.|. .++.....+...+
T Consensus 77 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 77 GDLHEAEETSSEVLKREETNEKALFRRAKARIAAWK-LDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 7999999999999999998 5565555554443
No 260
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=1.5e-07 Score=76.36 Aligned_cols=114 Identities=10% Similarity=0.003 Sum_probs=104.7
Q ss_pred chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC
Q psy13451 58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDE 137 (522)
Q Consensus 58 ~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~ 137 (522)
...+|...+.+....+. +++++..++.++..+|.+..+|..++.+.... +++++++..++++++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~ 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGN----------IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK---GDYQKAYEDGCKTVDLKP 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHhCc
Confidence 45678888888888777 79999999999999999999999999999999 999999999999999999
Q ss_pred CCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHh
Q psy13451 138 RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLL 185 (522)
Q Consensus 138 kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll 185 (522)
.+..+|...+.+....+. ++++++++.++++.+|.+..+|...+.+.
T Consensus 70 ~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 70 DWGKGYSRKAAALEFLNR-FEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999988 79999999999999999999998776543
No 261
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.73 E-value=1.2e-08 Score=106.32 Aligned_cols=131 Identities=10% Similarity=0.073 Sum_probs=112.1
Q ss_pred hcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHH
Q psy13451 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDH 115 (522)
Q Consensus 36 ~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~ 115 (522)
..|++ ++|++.+++++.++|++..+|+.++.++..++. +++++..++++++.+|++..+|+.++.++..
T Consensus 18 ~~g~~-~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 18 KAKDY-ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC----------YGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HhCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34445 889999999999999999999999999999988 7999999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHH--HHhcCCCCHHHHHHHH-----------HHHHhcCCcchHhhHH
Q psy13451 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYV--TDRHKVAPLKELNYST-----------EKIEANFSNYSAWHYR 181 (522)
Q Consensus 116 l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~--l~~~~~~~~~el~~~~-----------~~i~~~~~n~saW~~r 181 (522)
+ ++++++++.++++++.+|.+..+|...+.+ ....+. ++++++.++ ++++.+|+...+++..
T Consensus 87 ~---g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 161 (477)
T 1wao_1 87 L---GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLED 161 (477)
T ss_dssp H---TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH-HCCC------CCSTTTCCTTSSCCCCTTCCSCCCGG
T ss_pred c---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHhccccccchhHhhhhhhhcccccccccccccc
Confidence 9 999999999999999999999999999888 544454 567788888 8888888877776543
No 262
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.73 E-value=3.1e-09 Score=110.73 Aligned_cols=126 Identities=10% Similarity=0.011 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHH
Q psy13451 85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYS 164 (522)
Q Consensus 85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~ 164 (522)
+++++..++++++.+|++..+|+.++.++... ++++++++.++++++++|.+..+|..++.+...++. ++++++++
T Consensus 22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-~~eA~~~~ 97 (477)
T 1wao_1 22 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRT---ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK-FRAALRDY 97 (477)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 79999999999999999999999999999999 999999999999999999999999999999999998 79999999
Q ss_pred HHHHHhcCCcchHhhHHHHH--hchhCCCCCCCCccchhHHHHHHHHHH-----------HHHhcCCCCcchhhH
Q psy13451 165 TEKIEANFSNYSAWHYRSKL--LPLLYPDPNNHLPIEQDKYVNEFSMVE-----------SAVFTEPKDQSAWFY 226 (522)
Q Consensus 165 ~~~i~~~~~n~saW~~r~~l--l~~l~~~~~~~~~~~~~~~~~el~~~~-----------~ai~~~p~~~s~W~y 226 (522)
+++++.+|.+..+|.+.+.+ +... +.++++++.+. +++..+|....++.-
T Consensus 98 ~~al~~~p~~~~~~~~l~~~~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~ 160 (477)
T 1wao_1 98 ETVVKVKPHDKDAKMKYQECNKIVKQ------------KAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLE 160 (477)
T ss_dssp HHHHHHSTTCTTHHHHHHHHHHHHHH------------HHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCG
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHH------------HHHHHHhccccccchhHhhhhhhhccccccccccccc
Confidence 99999999999999998887 4444 78899999999 999999988777643
No 263
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=7.5e-08 Score=81.96 Aligned_cols=121 Identities=18% Similarity=0.048 Sum_probs=109.8
Q ss_pred HhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC---cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q psy13451 97 LAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERN---FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFS 173 (522)
Q Consensus 97 ~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn---~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~ 173 (522)
..+|+...+|..++.+.... +++++++.+++++++.+|.+ ..+|..++.+....+. +++++++++++++.+|.
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKC---GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED-YDKAETEASKAIEKDGG 97 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTSC
T ss_pred ccchHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHhhCcc
Confidence 35678889999999988887 99999999999999999998 8999999999999988 79999999999999999
Q ss_pred cchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451 174 NYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233 (522)
Q Consensus 174 n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~ 233 (522)
+..+|..++.++..+ +.+++++.++.+++..+|++..+|.....+..+
T Consensus 98 ~~~~~~~~a~~~~~~------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 98 DVKALYRRSQALEKL------------GRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp CHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 999999999999888 789999999999999999999999776665443
No 264
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.71 E-value=5.1e-08 Score=81.83 Aligned_cols=105 Identities=6% Similarity=0.028 Sum_probs=92.0
Q ss_pred CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451 56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL 135 (522)
Q Consensus 56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~ 135 (522)
++...+|...|.++...+. +++++..++++|..+|++..+|+.++.++..+ ++++++++.+++++++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~----------~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~---~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKD----------FEKAHVHYDKAIELDPSNITFYNNKAAVYFEE---KKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh---hhHHHHHHHHHHHHHh
Confidence 3556788888999888887 89999999999999999999999999999999 9999999999999999
Q ss_pred cCCCcc-------hhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc
Q psy13451 136 DERNFH-------CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN 174 (522)
Q Consensus 136 d~kn~~-------aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n 174 (522)
+|.+.. ++...+.+...++. ++++++++.+++..+|..
T Consensus 72 ~~~~~~~~~~~a~~~~~lg~~~~~~~~-~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 72 GRETRADYKLIAKAMSRAGNAFQKQND-LSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSCCH
T ss_pred CcccchhhHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcCH
Confidence 998875 45556666677777 799999999999988853
No 265
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.71 E-value=2.8e-07 Score=83.36 Aligned_cols=120 Identities=14% Similarity=0.016 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCch----------------HHHHHHHHHHHHhhccccHHHHHHH
Q psy13451 21 VKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDIN----------------SLWNYRKEVLLHMKATLAEEELHEL 84 (522)
Q Consensus 21 ~~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~----------------t~wn~R~~~l~~l~~~~~~~~~~~~ 84 (522)
.+.-..+..........|++ ++|+..+.+++.+.|++. .+|..++.++..++.
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---------- 103 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEI-NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD---------- 103 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC----------
Confidence 33344555566667777887 889999999999999987 888888888888877
Q ss_pred HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcC
Q psy13451 85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHK 154 (522)
Q Consensus 85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~ 154 (522)
+++++..++.++..+|++..+|..++.++..+ +++++++..+.++++++|.+..+|...+.+...++
T Consensus 104 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 104 YPKAIDHASKVLKIDKNNVKALYKLGVANMYF---GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 78888999999999999988999998888888 88888999999999999988888877777766543
No 266
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.4e-07 Score=80.29 Aligned_cols=120 Identities=8% Similarity=-0.075 Sum_probs=110.7
Q ss_pred HhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC---ccchhhHHHHHHHhcCCCChHHHHHHH
Q psy13451 53 RNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS---YGTWFQRCYVLDHISRAPNYEKELELC 129 (522)
Q Consensus 53 ~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~---y~~W~~R~~il~~l~~~~~~~~el~~~ 129 (522)
..+|+...+|..++......+. +++++..++.++..+|.+ ..+|..++.++... +++++++..+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~ 88 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGD----------YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL---EDYDKAETEA 88 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH---ccHHHHHHHH
Confidence 3578899999999999998887 799999999999999998 89999999999998 9999999999
Q ss_pred HHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451 130 NYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP 186 (522)
Q Consensus 130 ~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~ 186 (522)
+++++.+|.+..+|..++.+....+. ++++++++.++++.+|.+..+|.....+..
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 89 SKAIEKDGGDVKALYRRSQALEKLGR-LDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHhhCccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999999999999999999999998 799999999999999999999977666543
No 267
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.71 E-value=3.7e-08 Score=95.41 Aligned_cols=179 Identities=4% Similarity=-0.096 Sum_probs=133.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHHhCCCC-
Q psy13451 31 IFEKRKNQEYDDEALSLTSEVLRNIPDI------NSLWNYRKEVLLHM-KATLAEEELHELVDRELKLTKDCLLAQPKS- 102 (522)
Q Consensus 31 ~~~~~~~~~~~~eal~~~~~~l~~np~~------~t~wn~R~~~l~~l-~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~- 102 (522)
.......|++ ++|+..+.+++.+.|+. ..+|+..+.++... +. +++++..+++++..+|+.
T Consensus 84 g~~~~~~g~~-~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~----------~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 84 YKCFKSGGNS-VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD----------YAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC----------HHHHHHHHHHHHHHHHhCC
Confidence 3344455666 88999999999998864 56888899999884 87 799999999999998865
Q ss_pred -----ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcc-------hhhHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy13451 103 -----YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFH-------CWDYRRYVTDRHKVAPLKELNYSTEKIEA 170 (522)
Q Consensus 103 -----y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~-------aW~~R~~~l~~~~~~~~~el~~~~~~i~~ 170 (522)
..+|...+.++..+ +++++++..++++++.+|.+.. +|...+.+...++. +++++.+++++++.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l 228 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALD---GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQSE 228 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGCC
T ss_pred ChHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence 46788889999998 9999999999999999998865 46677888888887 79999999999999
Q ss_pred cCCcchHhhHHHH--HhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHh
Q psy13451 171 NFSNYSAWHYRSK--LLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL 231 (522)
Q Consensus 171 ~~~n~saW~~r~~--ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll 231 (522)
+|+...+...+.. +.... .. ...+.+++++..+++++.++|.+..+|.-.+..+
T Consensus 229 ~p~~~~~~~~~~l~~l~~~~-~~------~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 229 DPNFADSRESNFLKSLIDAV-NE------GDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp ---------HHHHHHHHHHH-HT------TCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHH-Hc------CCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 9998877654332 11111 10 0125789999999999999998766665544444
No 268
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=1.3e-07 Score=91.16 Aligned_cols=147 Identities=8% Similarity=-0.030 Sum_probs=122.3
Q ss_pred CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451 56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL 135 (522)
Q Consensus 56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~ 135 (522)
|....+|..++.++...+. +++++..++.++..+|.+..+|..++.++..+ +++++++..++++++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRK----------YPEAAACYGRAITRNPLVAVYYTNRALCYLKM---QQPEQALADCRRALEL 67 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHTTS
T ss_pred ChhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHh
Confidence 6778899999999999888 79999999999999999999999999999999 9999999999999999
Q ss_pred cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHh
Q psy13451 136 DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVF 215 (522)
Q Consensus 136 d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~ 215 (522)
+|.+..+|..++.++..++. ++++++.+.++++.+|.+..++....+... ...+...+......
T Consensus 68 ~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~ 131 (281)
T 2c2l_A 68 DGQSVKAHFFLGQCQLEMES-YDEAIANLQRAYSLAKEQRLNFGDDIPSAL---------------RIAKKKRWNSIEER 131 (281)
T ss_dssp CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---------------HHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccchhhHHHHHHHHH---------------HHHHHHHHHHHHHH
Confidence 99999999999999999998 799999999999999977433321111111 12233334444556
Q ss_pred cCCCCcchhhHHHHHh
Q psy13451 216 TEPKDQSAWFYQRWLL 231 (522)
Q Consensus 216 ~~p~~~s~W~y~~~ll 231 (522)
..|.+.....|.+.++
T Consensus 132 ~~~~~~~i~~~l~~l~ 147 (281)
T 2c2l_A 132 RIHQESELHSYLTRLI 147 (281)
T ss_dssp CCCCCCHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHH
Confidence 7899999998888876
No 269
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.69 E-value=5.2e-08 Score=81.81 Aligned_cols=102 Identities=9% Similarity=-0.008 Sum_probs=88.2
Q ss_pred ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchH-----
Q psy13451 103 YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA----- 177 (522)
Q Consensus 103 y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~sa----- 177 (522)
..+|...|.+..+. ++++++++.++++++++|.+..+|..++.+...++. +++++++++++|+++|.+..+
T Consensus 8 A~a~~~lG~~~~~~---~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQ---KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK-FAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh-HHHHHHHHHHHHHhCcccchhhHHHH
Confidence 34567778888888 999999999999999999999999999999999998 799999999999999988764
Q ss_pred --hhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCC
Q psy13451 178 --WHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKD 220 (522)
Q Consensus 178 --W~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~ 220 (522)
|..++.+...+ +.++++++++.+++..+|+.
T Consensus 84 ~~~~~lg~~~~~~------------~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 84 KAMSRAGNAFQKQ------------NDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHc------------CCHHHHHHHHHHHHhhCcCH
Confidence 44455555555 78999999999999998864
No 270
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.69 E-value=2.5e-07 Score=88.17 Aligned_cols=167 Identities=11% Similarity=-0.006 Sum_probs=122.9
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhH
Q psy13451 34 KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLH----MKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQR 109 (522)
Q Consensus 34 ~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~----l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R 109 (522)
....|++ ++|+..+.+++. |++..+|...+.++.. .+. +++++..+++++..+ +..+|+..
T Consensus 16 ~~~~~~~-~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~----------~~~A~~~~~~a~~~~--~~~a~~~l 80 (273)
T 1ouv_A 16 SYKEKDF-TQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKN----------LKKAASFYAKACDLN--YSNGCHLL 80 (273)
T ss_dssp HHHTTCH-HHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCC----------HHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHhCCCH-HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCC----------HHHHHHHHHHHHHCC--CHHHHHHH
Confidence 3344444 778888888887 7777888888888777 555 578888888888775 77888888
Q ss_pred HHHHHH----hcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCcchHhhHH
Q psy13451 110 CYVLDH----ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDR----HKVAPLKELNYSTEKIEANFSNYSAWHYR 181 (522)
Q Consensus 110 ~~il~~----l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~----~~~~~~~el~~~~~~i~~~~~n~saW~~r 181 (522)
+.+... . +++++++.+++++++.+ +..+|...+.+... .+. +++++++++++++.+ +..++.+.
T Consensus 81 g~~~~~g~~~~---~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~-~~~A~~~~~~a~~~~--~~~a~~~l 152 (273)
T 1ouv_A 81 GNLYYSGQGVS---QNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRD-FKKAVEYFTKACDLN--DGDGCTIL 152 (273)
T ss_dssp HHHHHHTSSSC---CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCC-HHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHhCCCCcc---cCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccC-HHHHHHHHHHHHhcC--cHHHHHHH
Confidence 888877 5 77888888888888774 77788888888877 555 688888888888876 56777777
Q ss_pred HHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451 182 SKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233 (522)
Q Consensus 182 ~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~ 233 (522)
+.++..-.. ..+.++++++++++++.. ++..++.....++..
T Consensus 153 g~~~~~~~~--------~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 153 GSLYDAGRG--------TPKDLKKALASYDKACDL--KDSPGCFNAGNMYHH 194 (273)
T ss_dssp HHHHHHTSS--------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHcCCC--------CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence 777665210 015678888888888876 356677777777665
No 271
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=3.6e-07 Score=73.99 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccch
Q psy13451 27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTW 106 (522)
Q Consensus 27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W 106 (522)
...........|++ ++|+..+.+++..+|++..+|..++.+....+. +++++..++.++..+|++..+|
T Consensus 7 ~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~ 75 (118)
T 1elw_A 7 LKEKGNKALSVGNI-DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD----------YQKAYEDGCKTVDLKPDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHcccH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc----------HHHHHHHHHHHHHhCcccHHHH
Confidence 33444555566766 889999999999999999999999999999887 7999999999999999999999
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q psy13451 107 FQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVT 150 (522)
Q Consensus 107 ~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l 150 (522)
...+.++... +++++++..++++++.+|.+..+|...+-+.
T Consensus 76 ~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 76 SRKAAALEFL---NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999998 8999999999999999999998887766553
No 272
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.67 E-value=5.3e-08 Score=84.19 Aligned_cols=101 Identities=7% Similarity=-0.078 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCC--------ChHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q psy13451 79 EELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAP--------NYEKELELCNYYLELDERNFHCWDYRRYVT 150 (522)
Q Consensus 79 ~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~--------~~~~el~~~~~~l~~d~kn~~aW~~R~~~l 150 (522)
.+....+++++..++.+++.+|++..+|...+-++..+ ... .+++++..+++++++||++..+|+..+-++
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l-~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLEL-SQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34456689999999999999999999999999999987 211 257999999999999999999999999999
Q ss_pred HhcCC----------CCHHHHHHHHHHHHhcCCcchHhhH
Q psy13451 151 DRHKV----------APLKELNYSTEKIEANFSNYSAWHY 180 (522)
Q Consensus 151 ~~~~~----------~~~~el~~~~~~i~~~~~n~saW~~ 180 (522)
..++. .++++++++.+++++||.|...|..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 87751 2689999999999999998655443
No 273
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.67 E-value=2.9e-07 Score=73.93 Aligned_cols=109 Identities=12% Similarity=0.126 Sum_probs=99.4
Q ss_pred hCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCC--cc
Q psy13451 98 AQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFS--NY 175 (522)
Q Consensus 98 ~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~--n~ 175 (522)
.+|.+..+|...+.+.... +++++++..++++++.+|.+..+|...+.+....+. +++++++++++++.+|. +.
T Consensus 1 l~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~ 76 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDA---GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER-YEEAVDCYNYVINVIEDEYNK 76 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSS---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSCCTTCH
T ss_pred CCCCcHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCcccchH
Confidence 3799999999999999888 899999999999999999999999999999999988 79999999999999999 99
Q ss_pred hHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCc
Q psy13451 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQ 221 (522)
Q Consensus 176 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~ 221 (522)
.+|...+.+...+. +.++++++++.+++..+|.+.
T Consensus 77 ~~~~~l~~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 77 DVWAAKADALRYIE-----------GKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHTTCS-----------SCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHh-----------CCHHHHHHHHHHHhhcccCCC
Confidence 99999998877650 246889999999999999875
No 274
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.67 E-value=1.1e-08 Score=109.48 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=80.0
Q ss_pred hHHHHhcccccccCccCcchhhchhhhh-hhhcccccCCCCCcEEEecCCCccc-----ccC-cCCCCcccEEEecCCCC
Q psy13451 327 EIILKRFDLLKTLDPLRLNYYKDSESKY-KIETFIQTNPRANQITNLSSLQLTS-----IHH-MHCFAHCKQVDLSNNPL 399 (522)
Q Consensus 327 ~~~l~~l~~L~~Ldl~~~~~~~~l~~~~-~~~~~l~~l~~~~~~L~ls~n~l~~-----l~~-~~~l~~L~~L~Ls~n~l 399 (522)
+.....+++|+.|++.++...+.....+ .....++.+ +.|++++|.++. ++. +..+++|+.|++++|.+
T Consensus 157 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L----~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL----EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC----CEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc----cEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 3444577888888887776433211100 011112222 478888887763 233 45677888888888877
Q ss_pred CCcccccCCCCCCccEEEcCCCCCC-C----CCCCCCCCCcCEEEccCCCCCccc-----cCcccEEEcCCCCCCCCCC-
Q psy13451 400 TNNCLRHLTPLVACESLKLTHCSLS-S----LHVFPHLPSLESLDVSHNAPNIIL-----CVYFQSLKLTHCSLSSLHV- 468 (522)
Q Consensus 400 ~~~~~~~~~~l~~L~~L~l~~n~l~-~----~~~~~~l~~L~~L~ls~N~l~~~~-----~~~L~~L~Ls~n~l~~~~~- 468 (522)
.+ +|..+..+++|+.|+++.+... . ...+..+++|+.|+++++....++ +++|+.|++++|.+++...
T Consensus 233 ~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~ 311 (592)
T 3ogk_B 233 LE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHC 311 (592)
T ss_dssp GG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHH
T ss_pred HH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHH
Confidence 63 5566666777777777643211 1 113455556666666554333322 3456666666666443211
Q ss_pred --CCCCCCCCEEEcc
Q psy13451 469 --FPHLPSLESLDVS 481 (522)
Q Consensus 469 --l~~~~~L~~L~Ls 481 (522)
+..+++|+.|+++
T Consensus 312 ~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 312 TLIQKCPNLEVLETR 326 (592)
T ss_dssp HHHTTCTTCCEEEEE
T ss_pred HHHHhCcCCCEEecc
Confidence 2344444444444
No 275
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.66 E-value=3.6e-08 Score=89.37 Aligned_cols=128 Identities=8% Similarity=-0.036 Sum_probs=114.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc----------------cchhhHH
Q psy13451 47 LTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY----------------GTWFQRC 110 (522)
Q Consensus 47 ~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y----------------~~W~~R~ 110 (522)
.++......++...+|..++.++...+. +++++..+..++...|++. .+|..++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 26 IYDYTDEEKVQSAFDIKEEGNEFFKKNE----------INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 3333344555667788889998888887 7999999999999999988 8999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451 111 YVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL 188 (522)
Q Consensus 111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l 188 (522)
.++... +++++++..++++++.+|.+..+|..++.+...++. ++++++++.++++.+|.+..+|...+.+...+
T Consensus 96 ~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 96 TCYNKN---KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF-LEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHh---cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 999998 999999999999999999999999999999999998 79999999999999999999999888877766
No 276
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.65 E-value=1.2e-08 Score=101.38 Aligned_cols=145 Identities=8% Similarity=0.027 Sum_probs=94.3
Q ss_pred HHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc-----------------cchhhHHHHHH
Q psy13451 52 LRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY-----------------GTWFQRCYVLD 114 (522)
Q Consensus 52 l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y-----------------~~W~~R~~il~ 114 (522)
+...|+...+|..++..+...+. +++++..+..++..+|.+. .+|+.++.++.
T Consensus 172 ~~~~~~~a~~~~~~g~~~~~~g~----------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~ 241 (338)
T 2if4_A 172 VEERIGAADRRKMDGNSLFKEEK----------LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSC----------CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667888889988888777 6999999999999999987 49999999999
Q ss_pred HhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCC
Q psy13451 115 HISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNN 194 (522)
Q Consensus 115 ~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~ 194 (522)
++ +++++++..|+++++.+|.|..+|..++.++..++. ++++++++.++++.+|.|..+|.....+....
T Consensus 242 ~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~------ 311 (338)
T 2if4_A 242 KL---KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ-MDSARDDFRKAQKYAPDDKAIRRELRALAEQE------ 311 (338)
T ss_dssp TT---TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC-------------------------
T ss_pred Hc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH------
Confidence 98 899999999999999999999999999999999998 79999999999999999999998877664433
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCc
Q psy13451 195 HLPIEQDKYVNEFSMVESAVFTEPKDQ 221 (522)
Q Consensus 195 ~~~~~~~~~~~el~~~~~ai~~~p~~~ 221 (522)
.+..+++-..+.+++..+|++.
T Consensus 312 -----~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 312 -----KALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------------------
T ss_pred -----HHHHHHHHHHHHHhhCCCCCCC
Confidence 1456677788899999999875
No 277
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.64 E-value=1.3e-07 Score=95.85 Aligned_cols=137 Identities=16% Similarity=0.223 Sum_probs=88.1
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N 443 (522)
+.+.+.. .++.++. |.++++|+.+++..| ++.....+|.+ .+|+.+.+ .+.++.++ .|..+++|+.+.+.+|
T Consensus 206 ~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 206 EEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp SEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESS
T ss_pred CEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCc
Confidence 3455543 2555544 566666666666654 33333445555 56666666 33455543 5777888888888777
Q ss_pred CCC-----ccc------cCcccEEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCc
Q psy13451 444 APN-----IIL------CVYFQSLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510 (522)
Q Consensus 444 ~l~-----~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 510 (522)
.+. .++ +.+|+.+.+. +.++.++. |.++.+|+.+.|..| ++.+...+|.++ +|+.+.+.+|.+.
T Consensus 282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 654 222 5677888887 44776664 777888888888554 777777788888 8888888887654
Q ss_pred c
Q psy13451 511 A 511 (522)
Q Consensus 511 ~ 511 (522)
.
T Consensus 359 ~ 359 (401)
T 4fdw_A 359 Q 359 (401)
T ss_dssp B
T ss_pred c
Confidence 3
No 278
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.63 E-value=4.8e-09 Score=112.24 Aligned_cols=127 Identities=16% Similarity=0.101 Sum_probs=90.5
Q ss_pred CCCcccEEEecCCCCCCcccccCC-CCCCccEEEcC--C----CCCCCCCC-------CCCCCCcCEEEccCCCCCccc-
Q psy13451 385 CFAHCKQVDLSNNPLTNNCLRHLT-PLVACESLKLT--H----CSLSSLHV-------FPHLPSLESLDVSHNAPNIIL- 449 (522)
Q Consensus 385 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~~~-------~~~l~~L~~L~ls~N~l~~~~- 449 (522)
.+++|+.|.+++|.+++..+..+. .+++|+.|+++ + +.++..|. +..+++|+.|++++ .++...
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 367788888888887765554444 47888898888 3 56664431 45677899999977 554321
Q ss_pred ------cCcccEEEcCCCCCCCCCC---CCCCCCCCEEEccCCCCCCCChh-hhcCCCCccEEEecCCCCccc
Q psy13451 450 ------CVYFQSLKLTHCSLSSLHV---FPHLPSLESLDVSHNAIDHIEDS-VFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 450 ------~~~L~~L~Ls~n~l~~~~~---l~~~~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~ 512 (522)
+++|+.|++++|.+++... ...+++|+.|+|++|.+++.... ....+++|+.|++++|+++..
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence 5789999999998876432 25678999999999998654432 445588999999999988543
No 279
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=5.5e-07 Score=73.61 Aligned_cols=119 Identities=15% Similarity=0.199 Sum_probs=106.0
Q ss_pred hCCCc-hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHH
Q psy13451 54 NIPDI-NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYY 132 (522)
Q Consensus 54 ~np~~-~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~ 132 (522)
.+|+. ..+|...+.+....+. +++++..++.++..+|.+..+|...+.++... +++++++.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~ 69 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGD----------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ---GDYDEAIEYYQKA 69 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh---CCHHHHHHHHHHH
Confidence 45655 7889999998888877 79999999999999999999999999999988 8999999999999
Q ss_pred HhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451 133 LELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP 186 (522)
Q Consensus 133 l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~ 186 (522)
++.+|.+..+|...+.+....+. +++++++++++++.+|.+..++...+.+..
T Consensus 70 ~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 70 LELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 99999999999999999999988 799999999999999999999988776654
No 280
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.61 E-value=2.1e-07 Score=88.17 Aligned_cols=167 Identities=13% Similarity=0.144 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHh-------C-CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh--------CCCCccc
Q psy13451 42 DEALSLTSEVLRN-------I-PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA--------QPKSYGT 105 (522)
Q Consensus 42 ~eal~~~~~~l~~-------n-p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pk~y~~ 105 (522)
++|+..+.+++.+ + |....+|...+.++...+. +++++..++.++.. +|....+
T Consensus 18 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (283)
T 3edt_B 18 GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK----------YKEAAHLLNDALAIREKTLGKDHPAVAAT 87 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence 4556666666653 3 7888999999999999888 68888888888876 4777889
Q ss_pred hhhHHHHHHHhcCCCChHHHHHHHHHHHhh--------cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHh-------
Q psy13451 106 WFQRCYVLDHISRAPNYEKELELCNYYLEL--------DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEA------- 170 (522)
Q Consensus 106 W~~R~~il~~l~~~~~~~~el~~~~~~l~~--------d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~------- 170 (522)
|...+.+.... ++++++++.+.++++. +|....+|...+.+....+. +++++++++++++.
T Consensus 88 ~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 88 LNNLAVLYGKR---GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK-AEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCC
Confidence 99999999888 9999999999999998 68889999999999999998 79999999999998
Q ss_pred -cCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhc---------CCCCcchhhHHHHHhccC
Q psy13451 171 -NFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFT---------EPKDQSAWFYQRWLLGER 234 (522)
Q Consensus 171 -~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~---------~p~~~s~W~y~~~ll~~~ 234 (522)
+|.+..+|...+.+.... +.++++++++.+++.. +|.....|..........
T Consensus 164 ~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQ------------GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESK 225 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcC
Confidence 888889999999998888 7899999999999987 667777777666554433
No 281
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.61 E-value=7.6e-07 Score=84.73 Aligned_cols=164 Identities=8% Similarity=-0.010 Sum_probs=137.3
Q ss_pred cCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHH
Q psy13451 37 NQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLH----MKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYV 112 (522)
Q Consensus 37 ~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~----l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~i 112 (522)
.+++ ++|+..+.+++..+ +..+|...+.++.. .+. +++++..+++++..+ +..+|...+.+
T Consensus 55 ~~~~-~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~----------~~~A~~~~~~a~~~~--~~~a~~~lg~~ 119 (273)
T 1ouv_A 55 EKNL-KKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQN----------TNKALQYYSKACDLK--YAEGCASLGGI 119 (273)
T ss_dssp CCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC----------HHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccC----------HHHHHHHHHHHHHcC--CccHHHHHHHH
Confidence 3444 88999999999986 88999999999988 665 689999999999874 88999999999
Q ss_pred HHH----hcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCcchHhhHHHHH
Q psy13451 113 LDH----ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDR----HKVAPLKELNYSTEKIEANFSNYSAWHYRSKL 184 (522)
Q Consensus 113 l~~----l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~----~~~~~~~el~~~~~~i~~~~~n~saW~~r~~l 184 (522)
+.. . +++++++.+++++++.+ +..++...+.+... .+. +++++++++++++.+ +..++...+.+
T Consensus 120 ~~~~~~~~---~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~-~~~A~~~~~~a~~~~--~~~a~~~lg~~ 191 (273)
T 1ouv_A 120 YHDGKVVT---RDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD-LKKALASYDKACDLK--DSPGCFNAGNM 191 (273)
T ss_dssp HHHCSSSC---CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHcCCCcc---cCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHCC--CHHHHHHHHHH
Confidence 988 6 89999999999999987 67889999999887 555 699999999999874 57888888888
Q ss_pred hchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451 185 LPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233 (522)
Q Consensus 185 l~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~ 233 (522)
...-.. ..+.++++++++++++..+| ..++.....++..
T Consensus 192 ~~~g~~--------~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 192 YHHGEG--------ATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHTCS--------SCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred HHcCCC--------CCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 876210 11679999999999999977 6788888888766
No 282
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.59 E-value=1.2e-07 Score=95.88 Aligned_cols=191 Identities=7% Similarity=-0.069 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh
Q psy13451 23 WYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDIN----SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA 98 (522)
Q Consensus 23 ~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~----t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~ 98 (522)
....+..........|.+ ++|+..+.+++.++|++. .+|...+.++...+. +++++..++.++..
T Consensus 47 ~~~~l~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDC-RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD----------YNKAMQYHKHDLTL 115 (411)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHH
Confidence 344555556666777877 789999999999999986 589999999999887 68888888888887
Q ss_pred ------CCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh------cCCCcchhhHHHHHHHhcCCC----------
Q psy13451 99 ------QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL------DERNFHCWDYRRYVTDRHKVA---------- 156 (522)
Q Consensus 99 ------~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~------d~kn~~aW~~R~~~l~~~~~~---------- 156 (522)
.|....+|...+.++... +++++++..++++++. ++....+|...+.+....+..
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 192 (411)
T 4a1s_A 116 AKSMNDRLGEAKSSGNLGNTLKVM---GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG 192 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHccCchHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhh
Confidence 688889999999999998 8999999999999998 667777999999998887751
Q ss_pred ------CHHHHHHHHHHHHhc------CCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcc--
Q psy13451 157 ------PLKELNYSTEKIEAN------FSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQS-- 222 (522)
Q Consensus 157 ------~~~el~~~~~~i~~~------~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s-- 222 (522)
++++++++.++++.. +....+|...+.+.... +.++++++++.+++...|.+..
T Consensus 193 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL------------GDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc------------CChHHHHHHHHHHHHHHHhcCCcH
Confidence 478888888887753 33345888888888777 7899999999999999988766
Q ss_pred ----hhhHHHHHhccCCCccc
Q psy13451 223 ----AWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 223 ----~W~y~~~ll~~~~~~~~ 239 (522)
+|.....++...++...
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHH
Confidence 88888888877776554
No 283
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.58 E-value=2e-07 Score=89.85 Aligned_cols=159 Identities=13% Similarity=0.064 Sum_probs=133.2
Q ss_pred HHhcCCCCHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhC------
Q psy13451 34 KRKNQEYDDEALSLTSEVLRN--------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQ------ 99 (522)
Q Consensus 34 ~~~~~~~~~eal~~~~~~l~~--------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~------ 99 (522)
....|++ ++|+..+.+++.+ +|....+|+..+.++...+. +++++..++.++...
T Consensus 79 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 79 YRDQNKY-KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK----------YKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHCCCH-HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCc----------HHHHHHHHHHHHHHHHHhcCC
Confidence 3444555 8899999999988 57788999999999998887 678888888888763
Q ss_pred --CCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh--------cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy13451 100 --PKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL--------DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIE 169 (522)
Q Consensus 100 --pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~--------d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~ 169 (522)
|....+|...+.++... +++++++++++++++. +|....+|...+.+....+. +++++++++++++
T Consensus 148 ~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 223 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQ---GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-FKQAETLYKEILT 223 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 66778899999999888 8999999999999998 78888899999999999988 6999999999997
Q ss_pred h-------------------------------------------------cCCcchHhhHHHHHhchhCCCCCCCCccch
Q psy13451 170 A-------------------------------------------------NFSNYSAWHYRSKLLPLLYPDPNNHLPIEQ 200 (522)
Q Consensus 170 ~-------------------------------------------------~~~n~saW~~r~~ll~~l~~~~~~~~~~~~ 200 (522)
. +|.+..+|...+.+....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~------------ 291 (311)
T 3nf1_A 224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ------------ 291 (311)
T ss_dssp HHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC------------
Confidence 4 455566777777777766
Q ss_pred hHHHHHHHHHHHHHhcCCC
Q psy13451 201 DKYVNEFSMVESAVFTEPK 219 (522)
Q Consensus 201 ~~~~~el~~~~~ai~~~p~ 219 (522)
+.++++++++.+++.+.|+
T Consensus 292 g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 292 GKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp TCHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHhhc
Confidence 7899999999999998875
No 284
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.58 E-value=1.7e-07 Score=89.33 Aligned_cols=180 Identities=9% Similarity=0.008 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHH-------HHHHHHhhccc---------------------
Q psy13451 25 HNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYR-------KEVLLHMKATL--------------------- 76 (522)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R-------~~~l~~l~~~~--------------------- 76 (522)
+.+++..+.. ..++ ..+|+..+++++.++|+...+|..| +.+|..+.+..
T Consensus 8 ~~~~~~~~~~-~~~d-~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 8 ASLFESAVSM-LPMS-EARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHHH-TTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHHHHhcc-cCCC-HHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 3455555543 2333 3779999999999999999999999 88888764420
Q ss_pred c--------------HHHH----------HHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHH
Q psy13451 77 A--------------EEEL----------HELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYY 132 (522)
Q Consensus 77 ~--------------~~~~----------~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~ 132 (522)
. ++++ ..-++++.+.++.++..+|... +.+-++-+..+. ++|.+.+..++++
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~---~r~~dA~~~l~~a 161 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAA---ERWTDVIDQVKSA 161 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHT---TCHHHHHHHHTTG
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHc---CCHHHHHHHHHHh
Confidence 0 0110 1237788888888888888888 888888877777 8999999999877
Q ss_pred HhhcCCC---cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhc--CC-cchHhhHHHHHhchhCCCCCCCCccchhHHHHH
Q psy13451 133 LELDERN---FHCWDYRRYVTDRHKVAPLKELNYSTEKIEAN--FS-NYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNE 206 (522)
Q Consensus 133 l~~d~kn---~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~--~~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~e 206 (522)
.... .+ ..++.+.+.++..++. ++++++++++++... |. ...++.+++.++..+ ++.+++
T Consensus 162 ~~~~-d~~~~~~a~~~LG~al~~LG~-~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l------------Gr~deA 227 (282)
T 4f3v_A 162 GKWP-DKFLAGAAGVAHGVAAANLAL-FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ------------GNESAA 227 (282)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH------------TCHHHH
T ss_pred hccC-CcccHHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc------------CCHHHH
Confidence 6643 33 2489999999999998 799999999999654 66 556999999999999 889999
Q ss_pred HHHHHHHHhcCCCCcchhh
Q psy13451 207 FSMVESAVFTEPKDQSAWF 225 (522)
Q Consensus 207 l~~~~~ai~~~p~~~s~W~ 225 (522)
...+++++..+|+ ..+|.
T Consensus 228 ~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 228 VALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHhcCCc-HHHHH
Confidence 9999999999999 66663
No 285
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=3.8e-07 Score=74.59 Aligned_cols=118 Identities=16% Similarity=0.199 Sum_probs=104.4
Q ss_pred CCCC-ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchH
Q psy13451 99 QPKS-YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA 177 (522)
Q Consensus 99 ~pk~-y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~sa 177 (522)
+|.. ..+|+..+.+.... ++++++++.++++++.+|.+..+|...+.+....+. +++++.+++++++.+|.+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~ 79 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEA 79 (125)
T ss_dssp ---CHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHH
T ss_pred CccccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCccHHH
Confidence 4555 67888888888888 899999999999999999999999999999999887 799999999999999999999
Q ss_pred hhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhc
Q psy13451 178 WHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232 (522)
Q Consensus 178 W~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~ 232 (522)
|...+.+.... +.++++++++.+++..+|++..++..+..+..
T Consensus 80 ~~~la~~~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 80 WYNLGNAYYKQ------------GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHHT------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh------------cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 99999988877 78999999999999999999998877666543
No 286
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.57 E-value=2.7e-08 Score=106.34 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=28.0
Q ss_pred CcccEEEcCCCCCCCCCC---CCCCCCCCEEEccCCCCCCCC-hhhhcCCCCccEEEe
Q psy13451 451 VYFQSLKLTHCSLSSLHV---FPHLPSLESLDVSHNAIDHIE-DSVFAKYEACVQVIL 504 (522)
Q Consensus 451 ~~L~~L~Ls~n~l~~~~~---l~~~~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L 504 (522)
++|+.|++++|.+++... +..+++|+.|++++| +++.. ......+++|+.|++
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 556666666666543211 345566666666665 33221 112234666667666
No 287
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.56 E-value=4.1e-07 Score=91.34 Aligned_cols=180 Identities=9% Similarity=-0.012 Sum_probs=145.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc
Q psy13451 30 TIFEKRKNQEYDDEALSLTSEVLRN------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY 103 (522)
Q Consensus 30 ~~~~~~~~~~~~~eal~~~~~~l~~------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y 103 (522)
........|++ ++|+..+.+++.+ .+....+|+..+.+...++. +++++..+.+++...++..
T Consensus 109 ~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 109 RGMYELDQREY-LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ----------TYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHTTCH-HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCH-HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhCc
Confidence 34445566777 8899999999998 33466899999999999888 6899999999998765553
Q ss_pred -------cchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCc------chhhHHHHHHHhcCCCCHHHHHHHHHHHH-
Q psy13451 104 -------GTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNF------HCWDYRRYVTDRHKVAPLKELNYSTEKIE- 169 (522)
Q Consensus 104 -------~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~------~aW~~R~~~l~~~~~~~~~el~~~~~~i~- 169 (522)
.+++..+.+...+ ++++++++.++++++..++.- .++...+++....+. ++++++++.++++
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDL---KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-YEDAIPYFKRAIAV 253 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
Confidence 4788888888888 999999999999999877665 389999999999998 7999999999999
Q ss_pred ----hc-CCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcC-----CCCcchhhHHHHHhccCCC
Q psy13451 170 ----AN-FSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTE-----PKDQSAWFYQRWLLGERTS 236 (522)
Q Consensus 170 ----~~-~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~-----p~~~s~W~y~~~ll~~~~~ 236 (522)
.+ |....++...+.+.... +.++++++++++++... |.....+...+.+....+.
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKL------------GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred HHhhccchhHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 57 88888999999999888 78999999999999884 4333444444555544443
No 288
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.54 E-value=1.6e-07 Score=94.24 Aligned_cols=120 Identities=16% Similarity=0.072 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----------------hCCCchHHHHHHHHHHHHhhccccHHHHHHHH
Q psy13451 22 KWYHNLMETIFEKRKNQEYDDEALSLTSEVLR----------------NIPDINSLWNYRKEVLLHMKATLAEEELHELV 85 (522)
Q Consensus 22 ~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~----------------~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~ 85 (522)
+.-..+..........|++ ++|+..+.++|. ++|....+|+.++.++..++. +
T Consensus 221 ~~a~~~~~~g~~~~~~g~~-~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~----------~ 289 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNW-EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD----------W 289 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC----------H
T ss_pred HHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC----------H
Confidence 3334455556667777887 889999999999 778888888888888888877 6
Q ss_pred HHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCC
Q psy13451 86 DRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155 (522)
Q Consensus 86 ~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~ 155 (522)
++++..++++|+.+|++..+|+.++.++..+ ++++++++.++++++++|.+..+|.....+...++.
T Consensus 290 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGL---KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888 888888888888888888888888887777766543
No 289
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.53 E-value=5.1e-07 Score=85.41 Aligned_cols=128 Identities=13% Similarity=0.020 Sum_probs=110.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh-
Q psy13451 28 METIFEKRKNQEYDDEALSLTSEVLRN--------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA- 98 (522)
Q Consensus 28 ~~~~~~~~~~~~~~~eal~~~~~~l~~--------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~- 98 (522)
..........|++ ++|+..+.+++.+ +|....+|+..+.++...+. +++++..+.+++..
T Consensus 47 ~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~ 115 (283)
T 3edt_B 47 NILALVYRDQNKY-KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK----------YKEAEPLCKRALEIR 115 (283)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccH-HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHHH
Confidence 3444445556666 8899999999988 57888999999999999887 68888888888877
Q ss_pred -------CCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh--------cCCCcchhhHHHHHHHhcCCCCHHHHHH
Q psy13451 99 -------QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL--------DERNFHCWDYRRYVTDRHKVAPLKELNY 163 (522)
Q Consensus 99 -------~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~--------d~kn~~aW~~R~~~l~~~~~~~~~el~~ 163 (522)
+|....+|...+.+.... +++++++..++++++. +|....+|...+.+....+. +++++++
T Consensus 116 ~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~ 191 (283)
T 3edt_B 116 EKVLGKFHPDVAKQLNNLALLCQNQ---GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-YQDAETL 191 (283)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 588889999999999998 9999999999999999 88888999999999999998 7999999
Q ss_pred HHHHHHh
Q psy13451 164 STEKIEA 170 (522)
Q Consensus 164 ~~~~i~~ 170 (522)
++++++.
T Consensus 192 ~~~~l~~ 198 (283)
T 3edt_B 192 YKEILTR 198 (283)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 290
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.53 E-value=2.4e-07 Score=92.97 Aligned_cols=187 Identities=9% Similarity=0.005 Sum_probs=151.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh----
Q psy13451 27 LMETIFEKRKNQEYDDEALSLTSEVLRNIPDI----NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA---- 98 (522)
Q Consensus 27 ~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~----~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---- 98 (522)
+..........|.+ ++|+..+++++.++|++ ..+|...+.+....+. +++++..++.++..
T Consensus 12 l~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~ 80 (406)
T 3sf4_A 12 LALEGERLCKSGDC-RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD----------YAKALEYHHHDLTLARTI 80 (406)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccH-HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHhc
Confidence 33445556667777 88999999999999998 4688899999998887 67888888888776
Q ss_pred --CCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcc------hhhHHHHHHHhcCCC--------------
Q psy13451 99 --QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFH------CWDYRRYVTDRHKVA-------------- 156 (522)
Q Consensus 99 --~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~------aW~~R~~~l~~~~~~-------------- 156 (522)
.|....+|...+.+.... +++++++..++++++..|+... +|...+.+....+..
T Consensus 81 ~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 81 GDQLGEAKASGNLGNTLKVL---GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred cccHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 455678899999999988 8999999999999999887654 888888888877651
Q ss_pred -----CHHHHHHHHHHHHh------cCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcc---
Q psy13451 157 -----PLKELNYSTEKIEA------NFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQS--- 222 (522)
Q Consensus 157 -----~~~el~~~~~~i~~------~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s--- 222 (522)
++++++++.++++. .+....+|...+.+.... +.++++++++.+++...|....
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~ 225 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL------------GNFRDAVIAHEQRLLIAKEFGDKAA 225 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------TBHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 47888888888876 444556788888888877 7899999999999999888776
Q ss_pred ---hhhHHHHHhccCCCccc
Q psy13451 223 ---AWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 223 ---~W~y~~~ll~~~~~~~~ 239 (522)
+|.....++...++...
T Consensus 226 ~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCChHH
Confidence 88888888877776554
No 291
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.50 E-value=2e-06 Score=71.34 Aligned_cols=106 Identities=12% Similarity=0.028 Sum_probs=72.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC---cc
Q psy13451 31 IFEKRKNQEYDDEALSLTSEVLRNIPDIN---SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS---YG 104 (522)
Q Consensus 31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~---t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~---y~ 104 (522)
.......|++ ++|+..+.+++..+|++. .+|...+.+....+. +++++..++.++..+|++ ..
T Consensus 9 a~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~ 77 (129)
T 2xev_A 9 AFDALKNGKY-DDASQLFLSFLELYPNGVYTPNALYWLGESYYATRN----------FQLAEAQFRDLVSRYPTHDKAAG 77 (129)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTSTTHHH
T ss_pred HHHHHHhCCH-HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHHCCCCcccHH
Confidence 3344455555 667777777777777776 677777777777666 577777777777777777 66
Q ss_pred chhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHH
Q psy13451 105 TWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVT 150 (522)
Q Consensus 105 ~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l 150 (522)
+|...+.++... +++++++..++++++.+|.+..++.-+..+-
T Consensus 78 ~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 78 GLLKLGLSQYGE---GKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 677777777776 6777777777777777777666655554443
No 292
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.50 E-value=1.7e-07 Score=77.05 Aligned_cols=99 Identities=10% Similarity=0.072 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcC
Q psy13451 42 DEALSLTSEVLRN---IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISR 118 (522)
Q Consensus 42 ~eal~~~~~~l~~---np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~ 118 (522)
++|+..+.+++.+ +|++..+|...+.++...+. +++++..++++++.+|++..+|...+.++..+
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-- 74 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE----------YRKAEAVLANGVKQFPNHQALRVFYAMVLYNL-- 74 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc--
Confidence 5788899999999 58899999999999998888 78999999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc
Q psy13451 119 APNYEKELELCNYYLELDERNFHCWDYRRYVTDRH 153 (522)
Q Consensus 119 ~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~ 153 (522)
+++++++..+.++++.+|.+.....|.+-+....
T Consensus 75 -g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 75 -GRYEQGVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp -TCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 8889999999999999999888777766555443
No 293
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.50 E-value=6e-07 Score=90.11 Aligned_cols=117 Identities=13% Similarity=0.024 Sum_probs=106.8
Q ss_pred chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH----------------hCCCCccchhhHHHHHHHhcCCCC
Q psy13451 58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLL----------------AQPKSYGTWFQRCYVLDHISRAPN 121 (522)
Q Consensus 58 ~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~----------------~~pk~y~~W~~R~~il~~l~~~~~ 121 (522)
...+|..++..+...+. +++++..++++++ .+|....+|..++.++.++ ++
T Consensus 222 ~a~~~~~~g~~~~~~g~----------~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---g~ 288 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQN----------WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM---SD 288 (370)
T ss_dssp HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT---TC
T ss_pred HHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc---cC
Confidence 34668888888888777 7888888988888 7888999999999999999 99
Q ss_pred hHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451 122 YEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL 188 (522)
Q Consensus 122 ~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l 188 (522)
++++++.++++++.+|.+..+|..++.++..++. ++++++++.++++.+|.|..+|.....+...+
T Consensus 289 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 289 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE-YDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 79999999999999999999999988887766
No 294
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.46 E-value=8.3e-08 Score=79.01 Aligned_cols=100 Identities=8% Similarity=-0.005 Sum_probs=75.8
Q ss_pred CChHHHHHHHHHHHhh---cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCC
Q psy13451 120 PNYEKELELCNYYLEL---DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHL 196 (522)
Q Consensus 120 ~~~~~el~~~~~~l~~---d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~ 196 (522)
+++++++.+++++++. +|.+..+|...+.+....+. +++++++++++++.+|.+..+|.+.+.++..+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-------- 74 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE-YRKAEAVLANGVKQFPNHQALRVFYAMVLYNL-------- 74 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc--------
Confidence 4566777788888887 67777888888888877777 67888888888888888888888888777777
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhc
Q psy13451 197 PIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232 (522)
Q Consensus 197 ~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~ 232 (522)
+.++++++.+.+++..+|++..+..|.+.+..
T Consensus 75 ----g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 75 ----GRYEQGVELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp ----TCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 67788888888888888888777777666543
No 295
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.44 E-value=6.5e-07 Score=86.76 Aligned_cols=188 Identities=9% Similarity=-0.003 Sum_probs=147.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh---
Q psy13451 26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDI----NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA--- 98 (522)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~----~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--- 98 (522)
.+..........|++ ++|+..+++++.++|++ ..+|...+.+....+. +++++..++.++..
T Consensus 7 ~l~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~ 75 (338)
T 3ro2_A 7 ELALEGERLCKSGDC-RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD----------YAKALEYHHHDLTLART 75 (338)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhhc
Confidence 344445556667777 88999999999999998 4788888998888877 67777777777765
Q ss_pred ---CCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcc------hhhHHHHHHHhcCCC-------------
Q psy13451 99 ---QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFH------CWDYRRYVTDRHKVA------------- 156 (522)
Q Consensus 99 ---~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~------aW~~R~~~l~~~~~~------------- 156 (522)
.|....+|...+.+.... +++++++..++++++..++.-. ++...+.+....+..
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3ro2_A 76 IGDQLGEAKASGNLGNTLKVL---GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFP 152 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CC
T ss_pred ccccHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhh
Confidence 556678889999999888 8999999999999998877655 888888888777651
Q ss_pred ------CHHHHHHHHHHHHh------cCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcc--
Q psy13451 157 ------PLKELNYSTEKIEA------NFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQS-- 222 (522)
Q Consensus 157 ------~~~el~~~~~~i~~------~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s-- 222 (522)
++++++++++++.. .+....+|...+.+.... +.++++++++.+++...|....
T Consensus 153 ~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~A~~~~~~a~~~~~~~~~~~ 220 (338)
T 3ro2_A 153 EDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL------------GNFRDAVIAHEQRLLIAKEFGDKA 220 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHHHHhcCChH
Confidence 47788888888775 334445777788777776 7899999999999998877665
Q ss_pred ----hhhHHHHHhccCCCccc
Q psy13451 223 ----AWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 223 ----~W~y~~~ll~~~~~~~~ 239 (522)
+|.....++...+++..
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHH
Confidence 77777777777666544
No 296
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=6.3e-06 Score=79.45 Aligned_cols=165 Identities=15% Similarity=0.034 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchH-----HH-HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh
Q psy13451 25 HNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINS-----LW-NYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA 98 (522)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t-----~w-n~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~ 98 (522)
..+...+......|+| ++|++.+.+++...|.... .| .+.+.+....+. +++++..+.+++..
T Consensus 76 ~~l~~~~~~~~~~~~y-~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~~ 144 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRY-KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD----------YEYCILELKKLLNQ 144 (293)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSC----------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhH-HHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHH
Confidence 3445566666777877 8899999999999887432 22 233444344344 78999999999987
Q ss_pred CCCC------ccchhhHHHHHHHhcCCCChHHHHHHHHHHH---hhcCCCc----chhhHHHHHHHhcCCCCHHHHHHHH
Q psy13451 99 QPKS------YGTWFQRCYVLDHISRAPNYEKELELCNYYL---ELDERNF----HCWDYRRYVTDRHKVAPLKELNYST 165 (522)
Q Consensus 99 ~pk~------y~~W~~R~~il~~l~~~~~~~~el~~~~~~l---~~d~kn~----~aW~~R~~~l~~~~~~~~~el~~~~ 165 (522)
.++. ..+|+..+.+.... +++++++.++++++ +..|.+. .++...+.+....+. +++++++++
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~y~~~---~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~Al~~~~ 220 (293)
T 2qfc_A 145 QLTGIDVYQNLYIENAIANIYAEN---GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVN 220 (293)
T ss_dssp CCCSSCTTHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-HHHHHHHHH
Confidence 7765 45788889999888 99999999999999 4555532 589999999999998 799999999
Q ss_pred HHHHhcCCc------chHhhHHHHHhchhCCCCCCCCccchhHHHHH-HHHHHHHHhc
Q psy13451 166 EKIEANFSN------YSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNE-FSMVESAVFT 216 (522)
Q Consensus 166 ~~i~~~~~n------~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~e-l~~~~~ai~~ 216 (522)
++++..+.. ..++.+.+.+...+ +.++++ .+++++|+.+
T Consensus 221 kal~~~~~~~~~~~~~~~~~~lg~~y~~~------------g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 221 KAIEISCRINSMALIGQLYYQRGECLRKL------------EYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTBCSSHHHHHHHHHHHHHHT------------TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHc------------CCcHHHHHHHHHHHHHH
Confidence 999876331 56788888888887 667788 7778888754
No 297
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=1.6e-06 Score=71.46 Aligned_cols=118 Identities=12% Similarity=0.045 Sum_probs=103.6
Q ss_pred CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451 56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL 135 (522)
Q Consensus 56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~ 135 (522)
|+...+|...+.+....+. +++++..++.++..+|.+..+|...+.++... +++++++.+++++++.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKD----------FDTALKHYDKAKELDPTNMTYITNQAAVYFEK---GDYNKCRELCEKAIEV 67 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh---ccHHHHHHHHHHHHhh
Confidence 4456788888888888877 79999999999999999999999999999999 9999999999999999
Q ss_pred cCCC-------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchh
Q psy13451 136 DERN-------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL 188 (522)
Q Consensus 136 d~kn-------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l 188 (522)
+|.+ ..+|...+.+....+. +++++++++++++.+| +..++.....+...+
T Consensus 68 ~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 68 GRENREDYRQIAKAYARIGNSYFKEEK-YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 9988 8899999999999988 7999999999999998 667766665554443
No 298
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.41 E-value=3.4e-06 Score=69.84 Aligned_cols=110 Identities=7% Similarity=-0.153 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc---cchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC
Q psy13451 61 LWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY---GTWFQRCYVLDHISRAPNYEKELELCNYYLELDE 137 (522)
Q Consensus 61 ~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y---~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~ 137 (522)
++..++.++...+. +++++..++.++..+|.+. .+|...+.+.... +++++++..++++++.+|
T Consensus 4 ~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~~~~~~p 70 (129)
T 2xev_A 4 TAYNVAFDALKNGK----------YDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT---RNFQLAEAQFRDLVSRYP 70 (129)
T ss_dssp CHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCC----------HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHCC
Confidence 45566777777776 7999999999999999998 7999999999998 999999999999999999
Q ss_pred CC---cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHH
Q psy13451 138 RN---FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKL 184 (522)
Q Consensus 138 kn---~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~l 184 (522)
.+ ..+|...+.+....+. +++++++++++++.+|.+..++.-+..+
T Consensus 71 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 71 THDKAAGGLLKLGLSQYGEGK-NTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp TSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 99 7789999999999998 7999999999999999998877665543
No 299
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.39 E-value=4.4e-07 Score=91.61 Aligned_cols=179 Identities=8% Similarity=-0.094 Sum_probs=147.3
Q ss_pred HHhcCCCCHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh------CCC
Q psy13451 34 KRKNQEYDDEALSLTSEVLRN------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA------QPK 101 (522)
Q Consensus 34 ~~~~~~~~~eal~~~~~~l~~------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~------~pk 101 (522)
....|++ ++|+..+.+++.+ .|....+|...+.++...+. +++++..++.++.. .|.
T Consensus 96 ~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~ 164 (411)
T 4a1s_A 96 YFYLGDY-NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGR----------FDEAAICCERHLTLARQLGDRLS 164 (411)
T ss_dssp HHHHTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHCCCH-HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHHhhchHH
Confidence 3344555 7899999999999 78899999999999999988 68888888888887 566
Q ss_pred CccchhhHHHHHHHhcCCCC-----------------hHHHHHHHHHHHhhcC------CCcchhhHHHHHHHhcCCCCH
Q psy13451 102 SYGTWFQRCYVLDHISRAPN-----------------YEKELELCNYYLELDE------RNFHCWDYRRYVTDRHKVAPL 158 (522)
Q Consensus 102 ~y~~W~~R~~il~~l~~~~~-----------------~~~el~~~~~~l~~d~------kn~~aW~~R~~~l~~~~~~~~ 158 (522)
...+|...+.+.... ++ ++++++++.++++..+ ....+|...+.+....+. ++
T Consensus 165 ~~~~~~~l~~~~~~~---g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~ 240 (411)
T 4a1s_A 165 EGRALYNLGNVYHAK---GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD-FQ 240 (411)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHHHHHHHHHc---CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hH
Confidence 677999999999988 77 8999999999988643 334588899999999988 79
Q ss_pred HHHHHHHHHHHhcCCcch------HhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCC------cchhhH
Q psy13451 159 KELNYSTEKIEANFSNYS------AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKD------QSAWFY 226 (522)
Q Consensus 159 ~el~~~~~~i~~~~~n~s------aW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~------~s~W~y 226 (522)
+++++++++++..+.+.. +|...+.+.... +.++++++++++++...|.. ..+|..
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 308 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL------------GQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC------------cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998887655 888888888777 78999999999999998865 456666
Q ss_pred HHHHhccCCCccc
Q psy13451 227 QRWLLGERTSPVQ 239 (522)
Q Consensus 227 ~~~ll~~~~~~~~ 239 (522)
+..++...++...
T Consensus 309 la~~~~~~g~~~~ 321 (411)
T 4a1s_A 309 LGNTYTLLHEFNT 321 (411)
T ss_dssp HHHHHHHTTCHHH
T ss_pred HHHHHHHcCCHHH
Confidence 6777766666544
No 300
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.38 E-value=6.4e-06 Score=79.39 Aligned_cols=166 Identities=13% Similarity=0.001 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchH----HHHHH--HHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Q psy13451 24 YHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINS----LWNYR--KEVLLHMKATLAEEELHELVDRELKLTKDCLL 97 (522)
Q Consensus 24 y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t----~wn~R--~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~ 97 (522)
+..+.+.+......|++ ++|+..+.+++...|.... +..+. +.+....+. +++++..+++++.
T Consensus 75 ~~~l~~~i~~~~~~~~y-~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~Ai~~~~~al~ 143 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRY-KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD----------YEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSC----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhH-HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccC----------HHHHHHHHHHHHH
Confidence 33444556666677777 8899999999998876655 32233 332222223 6899999999999
Q ss_pred hCCCCcc------chhhHHHHHHHhcCCCChHHHHHHHHHHHh-------hcCCCcchhhHHHHHHHhcCCCCHHHHHHH
Q psy13451 98 AQPKSYG------TWFQRCYVLDHISRAPNYEKELELCNYYLE-------LDERNFHCWDYRRYVTDRHKVAPLKELNYS 164 (522)
Q Consensus 98 ~~pk~y~------~W~~R~~il~~l~~~~~~~~el~~~~~~l~-------~d~kn~~aW~~R~~~l~~~~~~~~~el~~~ 164 (522)
..++... +++..+.+.... +++++++.+++++++ ..+....++.+.+.+....+. ++++++++
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~y~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~A~~~~ 219 (293)
T 3u3w_A 144 QQLTGIDVYQNLYIENAIANIYAEN---GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQV 219 (293)
T ss_dssp TCCCCSCTTHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 7666554 577788888887 899999999999995 223334588999999999998 79999999
Q ss_pred HHHHHhcCCc------chHhhHHHHHhchhCCCCCCCCccchh-HHHHHHHHHHHHHhc
Q psy13451 165 TEKIEANFSN------YSAWHYRSKLLPLLYPDPNNHLPIEQD-KYVNEFSMVESAVFT 216 (522)
Q Consensus 165 ~~~i~~~~~n------~saW~~r~~ll~~l~~~~~~~~~~~~~-~~~~el~~~~~ai~~ 216 (522)
+++++..+.. ..+|.+.+.+...+ + .++++++++++|+.+
T Consensus 220 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~------------g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 220 NKAIEISCRINSMALIGQLYYQRGECLRKL------------EYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTBCTTHHHHHHHHHHHHHHT------------TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHh------------CCcHHHHHHHHHHHHHH
Confidence 9999976544 56889999999888 5 468999999999865
No 301
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.35 E-value=2.3e-07 Score=92.58 Aligned_cols=138 Identities=12% Similarity=0.183 Sum_probs=91.2
Q ss_pred cEEEecCCCcccccCcCCCCcccEEEecCCCCCCcccccCC--CCCCccEEEcCC--CC------CCCCC-CC--CCCCC
Q psy13451 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLT--PLVACESLKLTH--CS------LSSLH-VF--PHLPS 434 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~l~~--n~------l~~~~-~~--~~l~~ 434 (522)
+.|++++|.-..++.+. +++|+.|++..|.++......+. .+++|+.|+|+. |. +..+. .+ ..+|+
T Consensus 175 ~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~ 253 (362)
T 2ra8_A 175 NNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN 253 (362)
T ss_dssp CEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTT
T ss_pred cEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCC
Confidence 68999887322345543 78999999998887644433343 678899998853 21 11111 12 35788
Q ss_pred cCEEEccCCCCCcc---------ccCcccEEEcCCCCCCCCC------CCCCCCCCCEEEccCCCCCCCChhhhcC-CCC
Q psy13451 435 LESLDVSHNAPNII---------LCVYFQSLKLTHCSLSSLH------VFPHLPSLESLDVSHNAIDHIEDSVFAK-YEA 498 (522)
Q Consensus 435 L~~L~ls~N~l~~~---------~~~~L~~L~Ls~n~l~~~~------~l~~~~~L~~L~Ls~N~l~~~~~~~l~~-l~~ 498 (522)
|+.|++++|.++.. .+++|+.|+|+.|.|++.+ .+..+++|+.|+|++|.|++.....+.. +
T Consensus 254 Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-- 331 (362)
T 2ra8_A 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-- 331 (362)
T ss_dssp CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--
T ss_pred cCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--
Confidence 99999988887631 1567888888888887742 1345678888888888877654444443 3
Q ss_pred ccEEEecCCC
Q psy13451 499 CVQVILTGNP 508 (522)
Q Consensus 499 L~~L~L~~N~ 508 (522)
...+++++|+
T Consensus 332 g~~~~~~~~~ 341 (362)
T 2ra8_A 332 PMKIDVSDSQ 341 (362)
T ss_dssp CSEEECCSBC
T ss_pred CCEEEecCCc
Confidence 2457887776
No 302
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.34 E-value=6.4e-07 Score=89.79 Aligned_cols=181 Identities=7% Similarity=-0.063 Sum_probs=147.1
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc--
Q psy13451 32 FEKRKNQEYDDEALSLTSEVLRN------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY-- 103 (522)
Q Consensus 32 ~~~~~~~~~~~eal~~~~~~l~~------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y-- 103 (522)
......|++ ++|+..+.+++.+ .|....+|...+.++...+. +++++..++.++...|+..
T Consensus 55 ~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~ 123 (406)
T 3sf4_A 55 NAYFYLHDY-AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN----------FDEAIVCCQRHLDISRELNDK 123 (406)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCH-HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhcccc
Confidence 344455665 8899999999888 56778899999999999888 7899999999998877764
Q ss_pred ----cchhhHHHHHHHhcCCCC--------------------hHHHHHHHHHHHhh------cCCCcchhhHHHHHHHhc
Q psy13451 104 ----GTWFQRCYVLDHISRAPN--------------------YEKELELCNYYLEL------DERNFHCWDYRRYVTDRH 153 (522)
Q Consensus 104 ----~~W~~R~~il~~l~~~~~--------------------~~~el~~~~~~l~~------d~kn~~aW~~R~~~l~~~ 153 (522)
.+|...+.+.... ++ +++++..++++++. .+....+|...+.+....
T Consensus 124 ~~~~~~~~~l~~~~~~~---g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 200 (406)
T 3sf4_A 124 VGEARALYNLGNVYHAK---GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL 200 (406)
T ss_dssp HHHHHHHHHHHHHHHHH---HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHc---CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc
Confidence 4899999999888 77 99999999999987 444456888899999988
Q ss_pred CCCCHHHHHHHHHHHHhcCCcch------HhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCC------c
Q psy13451 154 KVAPLKELNYSTEKIEANFSNYS------AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKD------Q 221 (522)
Q Consensus 154 ~~~~~~el~~~~~~i~~~~~n~s------aW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~------~ 221 (522)
+. +++++++++++++..+.... +|...+.+.... +.+++++.++.+++...|.. .
T Consensus 201 g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 201 GN-FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL------------GEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp TB-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cC-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc------------CChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 88 79999999999998776655 888888888877 78999999999999988876 4
Q ss_pred chhhHHHHHhccCCCccc
Q psy13451 222 SAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 222 s~W~y~~~ll~~~~~~~~ 239 (522)
.++.....++...++...
T Consensus 268 ~~~~~la~~~~~~g~~~~ 285 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEK 285 (406)
T ss_dssp HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCcHHH
Confidence 466666666666666544
No 303
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.31 E-value=2.9e-06 Score=85.96 Aligned_cols=134 Identities=13% Similarity=0.271 Sum_probs=81.3
Q ss_pred cEEEecCCCcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCC
Q psy13451 368 QITNLSSLQLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN 443 (522)
Q Consensus 368 ~~L~ls~n~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N 443 (522)
+.+++++|.++.++. |. ..+|+.+.+..+ ++.....+|.++++|+.+.+..| ++.++ .|.. .+|+.+.+. +
T Consensus 183 ~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~ 257 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-N 257 (401)
T ss_dssp CEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-T
T ss_pred CeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-C
Confidence 345555555555544 33 345555555432 44333445555566666666543 33332 3444 456666663 3
Q ss_pred CCCccc------cCcccEEEcCCCCCC-----CCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCC
Q psy13451 444 APNIIL------CVYFQSLKLTHCSLS-----SLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507 (522)
Q Consensus 444 ~l~~~~------~~~L~~L~Ls~n~l~-----~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 507 (522)
.++.++ +.+|+.+.+.+|.+. .++. |..+++|+.+.|. +.++.++..+|.+|++|+.+.|..|
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 344333 567888888877765 3443 8888888888888 4588888888888888998888655
No 304
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=2e-06 Score=70.97 Aligned_cols=115 Identities=12% Similarity=-0.040 Sum_probs=100.3
Q ss_pred CCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc------
Q psy13451 101 KSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN------ 174 (522)
Q Consensus 101 k~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n------ 174 (522)
+...+|...+.+.... +++++++..++++++.+|.+..+|...+.+....+. ++++++++++++..+|.+
T Consensus 2 ~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 2 KQALKEKELGNDAYKK---KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD-YNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred hHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhccccchhHHH
Confidence 3456778888888777 899999999999999999999999999999999988 799999999999999887
Q ss_pred -chHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhc
Q psy13451 175 -YSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLG 232 (522)
Q Consensus 175 -~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~ 232 (522)
..+|...+.+.... +.++++++++.+++..+| +..++.....+..
T Consensus 78 ~~~~~~~la~~~~~~------------~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 78 IAKAYARIGNSYFKE------------EKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh------------ccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 88899998888877 789999999999999999 6677766655543
No 305
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.29 E-value=2.3e-06 Score=69.72 Aligned_cols=87 Identities=11% Similarity=-0.052 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCCh
Q psy13451 43 EALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNY 122 (522)
Q Consensus 43 eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~ 122 (522)
+|+..+.+++..+|++..+|...+.++...+. +++++..++.++..+|.+..+|...+.++... +++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~ 69 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQ----------FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ---GDR 69 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc---CCH
Confidence 56788888888888888888888888888877 68888888888888888888888888888888 888
Q ss_pred HHHHHHHHHHHhhcCCCcch
Q psy13451 123 EKELELCNYYLELDERNFHC 142 (522)
Q Consensus 123 ~~el~~~~~~l~~d~kn~~a 142 (522)
++++..++++++.+|.+-..
T Consensus 70 ~~A~~~~~~al~~~~~~~~~ 89 (115)
T 2kat_A 70 AGARQAWESGLAAAQSRGDQ 89 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhccccccH
Confidence 88888888888888765433
No 306
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=2.1e-07 Score=83.69 Aligned_cols=62 Identities=11% Similarity=0.069 Sum_probs=41.8
Q ss_pred CcccEEEcCCCCCCCCC------CCCCCCCCCEEEc--cCCCCCCCC----hhhhcCCCCccEEEecCCCCccc
Q psy13451 451 VYFQSLKLTHCSLSSLH------VFPHLPSLESLDV--SHNAIDHIE----DSVFAKYEACVQVILTGNPVSAD 512 (522)
Q Consensus 451 ~~L~~L~Ls~n~l~~~~------~l~~~~~L~~L~L--s~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~ 512 (522)
++|+.|+|++|.|++.+ .+...++|+.|+| ++|.|+... ...+...++|+.|+|++|.++..
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 44555666666555422 1556678888999 788888753 23455668899999999888644
No 307
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.25 E-value=1.5e-06 Score=84.04 Aligned_cols=182 Identities=7% Similarity=-0.065 Sum_probs=145.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCcc
Q psy13451 31 IFEKRKNQEYDDEALSLTSEVLRN------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYG 104 (522)
Q Consensus 31 ~~~~~~~~~~~~eal~~~~~~l~~------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~ 104 (522)
.......|++ ++|+..+.+++.+ .|....+|...+.++...+. +++++..++.++...|+...
T Consensus 50 ~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~ 118 (338)
T 3ro2_A 50 GNAYFYLHDY-AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN----------FDEAIVCCQRHLDISRELND 118 (338)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHHHHHhcC
Confidence 3344455665 8899999999988 66778899999999999887 78899999999887776644
Q ss_pred ------chhhHHHHHHHhcCCCC--------------------hHHHHHHHHHHHhh------cCCCcchhhHHHHHHHh
Q psy13451 105 ------TWFQRCYVLDHISRAPN--------------------YEKELELCNYYLEL------DERNFHCWDYRRYVTDR 152 (522)
Q Consensus 105 ------~W~~R~~il~~l~~~~~--------------------~~~el~~~~~~l~~------d~kn~~aW~~R~~~l~~ 152 (522)
+|...+.+.... ++ +++++..+++++.. .+....++...+.+...
T Consensus 119 ~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 119 KVGEARALYNLGNVYHAK---GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHc---CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 888889888888 66 89999999998876 34445688888888888
Q ss_pred cCCCCHHHHHHHHHHHHhcCCcch------HhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCC------
Q psy13451 153 HKVAPLKELNYSTEKIEANFSNYS------AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKD------ 220 (522)
Q Consensus 153 ~~~~~~~el~~~~~~i~~~~~n~s------aW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~------ 220 (522)
.+. +++++++++++++..+.+.. +|...+.+.... +.++++++++.+++...|..
T Consensus 196 ~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 196 LGN-FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL------------GEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hCC-HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 887 79999999999988766555 888888888777 78999999999999988776
Q ss_pred cchhhHHHHHhccCCCccc
Q psy13451 221 QSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 221 ~s~W~y~~~ll~~~~~~~~ 239 (522)
..++.....++...++...
T Consensus 263 ~~~~~~la~~~~~~g~~~~ 281 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEK 281 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHH
Confidence 4456666666666665544
No 308
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.21 E-value=2.2e-05 Score=78.54 Aligned_cols=164 Identities=15% Similarity=0.008 Sum_probs=134.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy13451 29 ETIFEKRKNQEYDDEALSLTSEVLRNI------PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS 102 (522)
Q Consensus 29 ~~~~~~~~~~~~~~eal~~~~~~l~~n------p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~ 102 (522)
-........|++ ++|+..+.+++.+- |....+++..+.+...++. +.+++..+.+++...++.
T Consensus 106 ~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~----------~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 106 FRGMYEFDQKEY-VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ----------THVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHCCH-HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHHHHHhC
Confidence 334445566777 88999999999873 3456788888888888887 688999999988876543
Q ss_pred -------ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy13451 103 -------YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIE 169 (522)
Q Consensus 103 -------y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~ 169 (522)
..+++..+.+.... ++++++++.++++++..++. ..++...+++....+. ++++++++.++++
T Consensus 175 ~~~~~~~~~~~~~lg~~y~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~A~~~~~~al~ 250 (378)
T 3q15_A 175 PLYSIRTIQSLFVIAGNYDDF---KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD-DQMAVEHFQKAAK 250 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 34677778888888 99999999999999964322 3477788999988888 7999999999999
Q ss_pred -----hcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCC
Q psy13451 170 -----ANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPK 219 (522)
Q Consensus 170 -----~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~ 219 (522)
.+|....++...+.+.... +.++++++++++++...+.
T Consensus 251 ~~~~~~~~~~~~~~~~la~~~~~~------------g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 251 VSREKVPDLLPKVLFGLSWTLCKA------------GQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHCCT
T ss_pred HHHhhCChhHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHH
Confidence 8898889999999998888 7899999999999998765
No 309
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.19 E-value=6.3e-06 Score=80.17 Aligned_cols=162 Identities=6% Similarity=-0.047 Sum_probs=124.8
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC------
Q psy13451 35 RKNQEYDDEALSLTSEVLRNIPDI------NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS------ 102 (522)
Q Consensus 35 ~~~~~~~~eal~~~~~~l~~np~~------~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~------ 102 (522)
+..|.+ ++|++.+.+++.+.+.. ..+++..+.++..++. +++++..+++++...++.
T Consensus 47 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~----------~~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 47 KNAKQL-EQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR----------MPEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp HHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------GGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred HHcCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHHcCCHHHH
Confidence 344555 88999999999987643 5677788888888777 578888888888875432
Q ss_pred ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcch
Q psy13451 103 YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176 (522)
Q Consensus 103 y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~s 176 (522)
..+|...+.++. . +++++++.++++++++.+.. ..++...+.+...++. +++++++++++++..+.+..
T Consensus 116 a~~~~~lg~~~~---~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 116 AMALDRAGKLME---P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-FDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHHHHT---T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH---c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCC
Confidence 245555566553 3 78999999999999988765 4678888999999988 79999999999998776543
Q ss_pred ------HhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhh
Q psy13451 177 ------AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWF 225 (522)
Q Consensus 177 ------aW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~ 225 (522)
+|...+.+...+ +.+++++.++++++ .+|....+..
T Consensus 191 ~~~~~~~~~~~g~~~~~~------------g~~~~A~~~~~~al-~~p~~~~~~e 232 (307)
T 2ifu_A 191 YPTCYKKCIAQVLVQLHR------------ADYVAAQKCVRESY-SIPGFSGSED 232 (307)
T ss_dssp HHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHT-TSTTSTTSHH
T ss_pred hhHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHh-CCCCCCCCHH
Confidence 455555555554 68999999999999 9998876543
No 310
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.16 E-value=7.8e-07 Score=88.70 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=92.4
Q ss_pred cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCC--CCC--CCCCCcCEEEccC--CC------CC----
Q psy13451 383 MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL--HVF--PHLPSLESLDVSH--NA------PN---- 446 (522)
Q Consensus 383 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~ls~--N~------l~---- 446 (522)
+..+|+|+.|.|++|.-. ..+. +. +++|+.|++..|.++.- ..+ ..+|+|+.|+|+. |. +.
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 567889999999988411 2333 43 78999999998887642 122 3688999999853 21 11
Q ss_pred ---ccccCcccEEEcCCCCCCCCCC-----CCCCCCCCEEEccCCCCCCCChh----hhcCCCCccEEEecCCCCccccc
Q psy13451 447 ---IILCVYFQSLKLTHCSLSSLHV-----FPHLPSLESLDVSHNAIDHIEDS----VFAKYEACVQVILTGNPVSADMV 514 (522)
Q Consensus 447 ---~~~~~~L~~L~Ls~n~l~~~~~-----l~~~~~L~~L~Ls~N~l~~~~~~----~l~~l~~L~~L~L~~N~l~~~~~ 514 (522)
...+++|+.|+|++|.+++... .+.+++|++|+|+.|.|++.... .+..+++|+.|+|++|.++....
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 1125799999999999875321 34678999999999999885422 23457899999999999885543
No 311
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.09 E-value=8.2e-06 Score=66.39 Aligned_cols=87 Identities=9% Similarity=-0.009 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHH
Q psy13451 87 RELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTE 166 (522)
Q Consensus 87 ~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~ 166 (522)
+++..++.+++.+|++..+|+..+.++... +++++++..++++++.+|.+..+|...+.+....+. ++++++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH---EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD-RAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 567889999999999999999999999998 999999999999999999999999999999999998 7999999999
Q ss_pred HHHhcCCcchH
Q psy13451 167 KIEANFSNYSA 177 (522)
Q Consensus 167 ~i~~~~~n~sa 177 (522)
+++.+|.+...
T Consensus 79 al~~~~~~~~~ 89 (115)
T 2kat_A 79 GLAAAQSRGDQ 89 (115)
T ss_dssp HHHHHHHHTCH
T ss_pred HHHhccccccH
Confidence 99998865443
No 312
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.08 E-value=1e-05 Score=64.26 Aligned_cols=76 Identities=12% Similarity=0.144 Sum_probs=53.8
Q ss_pred hCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHH
Q psy13451 54 NIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYL 133 (522)
Q Consensus 54 ~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l 133 (522)
.+|++..+|...+.++...+. +++++..++.+++.+|++..+|..++.++..+ ++++++++.+++++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al 68 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDN----------ASRALALFEELVETDPDYVGTYYHLGKLYERL---DRTDDAIDTYAQGI 68 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Confidence 467777777777777777766 67777777777777777777777777777777 77777777777777
Q ss_pred hhcCCCcch
Q psy13451 134 ELDERNFHC 142 (522)
Q Consensus 134 ~~d~kn~~a 142 (522)
+++|++-..
T Consensus 69 ~l~~~~~~~ 77 (100)
T 3ma5_A 69 EVAREEGTQ 77 (100)
T ss_dssp HHHHHHSCH
T ss_pred hhhhcCCch
Confidence 776654333
No 313
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.06 E-value=2e-05 Score=60.51 Aligned_cols=82 Identities=15% Similarity=0.243 Sum_probs=55.6
Q ss_pred chHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC
Q psy13451 58 INSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDE 137 (522)
Q Consensus 58 ~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~ 137 (522)
...+|...+.++...+. +++++..+++++..+|.+..+|...+.++... +++++++..++++++.+|
T Consensus 8 ~~~~~~~la~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGD----------YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---hhHHHHHHHHHHHHhcCC
Confidence 45666666666666655 56777777777777777777777777777666 666777777777777777
Q ss_pred CCcchhhHHHHHHHh
Q psy13451 138 RNFHCWDYRRYVTDR 152 (522)
Q Consensus 138 kn~~aW~~R~~~l~~ 152 (522)
.+..+|...+.+...
T Consensus 75 ~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 75 NNAEAKQNLGNAKQK 89 (91)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 776666666655543
No 314
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.04 E-value=9.2e-06 Score=63.96 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=70.8
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcc-hhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc
Q psy13451 108 QRCYVLDHISRAPNYEKELELCNYYLELDERNFH-CWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP 186 (522)
Q Consensus 108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~-aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~ 186 (522)
.++.++... +++++++..++++++.+|.+.. +|..++.+....+. +++++++++++++.+|.+..+|.+
T Consensus 5 ~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~------ 74 (99)
T 2kc7_A 5 KTIKELINQ---GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD-WQKALNNYQSAIELNPDSPALQAR------ 74 (99)
T ss_dssp HHHHHHHHH---TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTHHHHH------
T ss_pred HHHHHHHHc---CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHHH------
Confidence 345555555 7788888888888888888888 88888888888877 688888888888888888888755
Q ss_pred hhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcc
Q psy13451 187 LLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQS 222 (522)
Q Consensus 187 ~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s 222 (522)
..+.+.+.++.+++..+|++.+
T Consensus 75 --------------~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 --------------KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp --------------HHHHHHHHHHCCTTHHHHCCSS
T ss_pred --------------HHHHHHHHHHHHHhccCccccc
Confidence 2466777778888888777654
No 315
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.04 E-value=1.2e-05 Score=80.40 Aligned_cols=153 Identities=8% Similarity=-0.028 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh---CC---CCccchhhHHHHHHHhcCCCChHHHHHHHHHHHh
Q psy13451 61 LWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA---QP---KSYGTWFQRCYVLDHISRAPNYEKELELCNYYLE 134 (522)
Q Consensus 61 ~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~p---k~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~ 134 (522)
.+.+++.+....+. +++++..+++++.. .| ....+|+..+++.... +++++++..+.++++
T Consensus 105 ~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~---~~~~~A~~~~~~al~ 171 (383)
T 3ulq_A 105 FNFFRGMYELDQRE----------YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM---KQTYFSMDYARQAYE 171 (383)
T ss_dssp HHHHHHHHHHHTTC----------HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Confidence 45558888888877 79999999999986 23 3458899999999998 999999999999999
Q ss_pred hcCCCc-------chhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc------hHhhHHHHHhchhCCCCCCCCccchh
Q psy13451 135 LDERNF-------HCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY------SAWHYRSKLLPLLYPDPNNHLPIEQD 201 (522)
Q Consensus 135 ~d~kn~-------~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~------saW~~r~~ll~~l~~~~~~~~~~~~~ 201 (522)
+.++.- .++...+.+...++. ++++++++.++++..+... .++++.+.+.... +
T Consensus 172 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~------------g 238 (383)
T 3ulq_A 172 IYKEHEAYNIRLLQCHSLFATNFLDLKQ-YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ------------S 238 (383)
T ss_dssp HHHTCSTTHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------T
T ss_pred HHHhCccchHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC------------C
Confidence 866554 488888999999988 7999999999999866554 4888999988887 7
Q ss_pred HHHHHHHHHHHHHh-----cC-CCCcchhhHHHHHhccCCCccc
Q psy13451 202 KYVNEFSMVESAVF-----TE-PKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 202 ~~~~el~~~~~ai~-----~~-p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
.++++++++.+|+. .+ |....++...+.+....+++..
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 282 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDK 282 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHH
Confidence 89999999999999 56 7777888888888888877654
No 316
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.03 E-value=5.5e-07 Score=80.94 Aligned_cols=37 Identities=8% Similarity=0.040 Sum_probs=22.4
Q ss_pred CcccEEEc--CCCCCCCCCC------CCCCCCCCEEEccCCCCCC
Q psy13451 451 VYFQSLKL--THCSLSSLHV------FPHLPSLESLDVSHNAIDH 487 (522)
Q Consensus 451 ~~L~~L~L--s~n~l~~~~~------l~~~~~L~~L~Ls~N~l~~ 487 (522)
.+|+.|+| ++|.|++... +...++|+.|+|++|.++.
T Consensus 121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 34555555 5555554321 4455678888888887764
No 317
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.03 E-value=9.8e-06 Score=68.04 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=51.3
Q ss_pred cEEEcCCCCCC--CCCCCCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCcccccc
Q psy13451 454 QSLKLTHCSLS--SLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSADMVV 515 (522)
Q Consensus 454 ~~L~Ls~n~l~--~~~~l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 515 (522)
..++.+++.++ .+|. .-.++|+.|+|++|.|+.++...|..+++|+.|+|++|++.|+|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp TEEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred CEEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 36777777777 6663 1235799999999999999999999999999999999999999965
No 318
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.01 E-value=1.8e-05 Score=63.30 Aligned_cols=83 Identities=10% Similarity=0.082 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCC
Q psy13451 59 NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDER 138 (522)
Q Consensus 59 ~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~k 138 (522)
..+|..++.++...+. +++++..+++++..+|++..+|..++.++..+ ++++++++.++++++.+|.
T Consensus 4 ~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGL----------YREAVHCYDQLITAQPQNPVGYSNKAMALIKL---GEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCC
Confidence 4566666666666665 57777777777777777777777777777776 6677777777777777777
Q ss_pred C------cchhhHHHHHHHhcC
Q psy13451 139 N------FHCWDYRRYVTDRHK 154 (522)
Q Consensus 139 n------~~aW~~R~~~l~~~~ 154 (522)
+ ..++..++.+...++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVG 92 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 6 555555555555443
No 319
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.00 E-value=1.1e-05 Score=64.04 Aligned_cols=77 Identities=13% Similarity=0.023 Sum_probs=68.7
Q ss_pred hCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchH
Q psy13451 98 AQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA 177 (522)
Q Consensus 98 ~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~sa 177 (522)
.+|++..+|+..+.++... +++++++..++++++.+|.+..+|.+.+.+....+. +++++++++++++..+.+...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKH---DNASRALALFEELVETDPDYVGTYYHLGKLYERLDR-TDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp ---CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCH
T ss_pred CCccCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhhcCCch
Confidence 5899999999999999998 999999999999999999999999999999999998 799999999999987765544
Q ss_pred h
Q psy13451 178 W 178 (522)
Q Consensus 178 W 178 (522)
+
T Consensus 78 ~ 78 (100)
T 3ma5_A 78 K 78 (100)
T ss_dssp H
T ss_pred h
Confidence 3
No 320
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.98 E-value=2.3e-05 Score=61.63 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=57.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHH
Q psy13451 32 FEKRKNQEYDDEALSLTSEVLRNIPDINS-LWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRC 110 (522)
Q Consensus 32 ~~~~~~~~~~~eal~~~~~~l~~np~~~t-~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~ 110 (522)
......|++ ++|+..+++++..+|++.. +|..++.++...+. +++++..++.+++.+|++..+|.+
T Consensus 8 ~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~-- 74 (99)
T 2kc7_A 8 KELINQGDI-ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD----------WQKALNNYQSAIELNPDSPALQAR-- 74 (99)
T ss_dssp HHHHHHTCH-HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHCTTSTHHHHH--
T ss_pred HHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCcHHHHHH--
Confidence 334445555 6677777777777777777 77777777777766 577777777777777777777644
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhhcCCC
Q psy13451 111 YVLDHISRAPNYEKELELCNYYLELDERN 139 (522)
Q Consensus 111 ~il~~l~~~~~~~~el~~~~~~l~~d~kn 139 (522)
. .+.+.+.++++++..+|.+
T Consensus 75 ---~------~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 ---K------MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp ---H------HHHHHHHHHCCTTHHHHCC
T ss_pred ---H------HHHHHHHHHHHHhccCccc
Confidence 1 1245566666666666654
No 321
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.96 E-value=7.6e-05 Score=71.72 Aligned_cols=139 Identities=12% Similarity=0.000 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHhCCCCcc-----chh-hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHh
Q psy13451 85 VDRELKLTKDCLLAQPKSYG-----TWF-QRCYVLDHISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDR 152 (522)
Q Consensus 85 ~~~eL~~~~~~l~~~pk~y~-----~W~-~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~ 152 (522)
+++++..+..++...|+... .|+ +.+.+... .+++++++..+.++++..+++ ..+|+..+.+...
T Consensus 91 y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 2qfc_A 91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK---KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT---SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 78999999999998887532 222 22333333 378999999999999877665 4578888999999
Q ss_pred cCCCCHHHHHHHHHHH---HhcCCcc----hHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCC-----
Q psy13451 153 HKVAPLKELNYSTEKI---EANFSNY----SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKD----- 220 (522)
Q Consensus 153 ~~~~~~~el~~~~~~i---~~~~~n~----saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~----- 220 (522)
.+. ++++++++++++ +..+.+. .++++.+.++... +.++++++++++++.+.+..
T Consensus 168 ~~~-~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~------------~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 168 NGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD------------SRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp TTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred cCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH------------hhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 888 799999999999 5556543 6889999998888 88999999999999886532
Q ss_pred -cchhhHHHHHhccCCCccc
Q psy13451 221 -QSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 221 -~s~W~y~~~ll~~~~~~~~ 239 (522)
..+++..+.+....+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~ 254 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEA 254 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHcCCcHH
Confidence 3566667777777776554
No 322
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.93 E-value=2.7e-05 Score=59.82 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=75.8
Q ss_pred CCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhH
Q psy13451 101 KSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHY 180 (522)
Q Consensus 101 k~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~ 180 (522)
.+..+|...+.+.... +++++++..++++++.+|.+..+|...+.+....+. +++++++++++++.+|.+..+|..
T Consensus 7 ~~~~~~~~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4567888899988888 899999999999999999999999999999999988 799999999999999999999998
Q ss_pred HHHHhch
Q psy13451 181 RSKLLPL 187 (522)
Q Consensus 181 r~~ll~~ 187 (522)
.+.+...
T Consensus 83 l~~~~~~ 89 (91)
T 1na3_A 83 LGNAKQK 89 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877654
No 323
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.92 E-value=9e-05 Score=67.66 Aligned_cols=168 Identities=6% Similarity=-0.067 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCC
Q psy13451 41 DDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAP 120 (522)
Q Consensus 41 ~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~ 120 (522)
+++|+..+.++... .+..+++.-+.++...+. +++++.++++++.. .+..+++.-+.++..-....
T Consensus 2 ~~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~----------~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~ 67 (212)
T 3rjv_A 2 ATEPGSQYQQQAEA--GDRRAQYYLADTWVSSGD----------YQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQA 67 (212)
T ss_dssp --CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSC
T ss_pred CchHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCC
Confidence 35678888888875 788888888888888665 68888888888764 57788888888766521123
Q ss_pred ChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh----cCCCCHHHHHHHHHHHHhcCC--cchHhhHHHHHhchhCCCCCC
Q psy13451 121 NYEKELELCNYYLELDERNFHCWDYRRYVTDR----HKVAPLKELNYSTEKIEANFS--NYSAWHYRSKLLPLLYPDPNN 194 (522)
Q Consensus 121 ~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~----~~~~~~~el~~~~~~i~~~~~--n~saW~~r~~ll~~l~~~~~~ 194 (522)
++++++.++.+++ ++.+..++..-+.+... .+. ++++++++.++++.+++ +..|++..+.+...-...
T Consensus 68 ~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d-~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~--- 141 (212)
T 3rjv_A 68 DYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATD-VAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG--- 141 (212)
T ss_dssp CHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCC-HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS---
T ss_pred CHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccC-HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC---
Confidence 7889999999985 45678888888888865 333 68889999999998884 578888888877653211
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccC
Q psy13451 195 HLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER 234 (522)
Q Consensus 195 ~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~ 234 (522)
...+++++.++.+|+.. |.+..+++.++.+....
T Consensus 142 -----~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g 175 (212)
T 3rjv_A 142 -----PEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQG 175 (212)
T ss_dssp -----SCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHC
T ss_pred -----CCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcC
Confidence 14688899999999988 77777887777776543
No 324
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=1.1e-06 Score=83.20 Aligned_cols=79 Identities=20% Similarity=0.234 Sum_probs=49.6
Q ss_pred CCCCccEEEcCCCCCCCCCCCC----CCCCcCEEEccCCCCCccccCcccEEEcCCCCCCCCCCCCCCCCCCEEEccCCC
Q psy13451 409 PLVACESLKLTHCSLSSLHVFP----HLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484 (522)
Q Consensus 409 ~l~~L~~L~l~~n~l~~~~~~~----~l~~L~~L~ls~N~l~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~L~~L~Ls~N~ 484 (522)
.+++|+.|+|++|.|++++++. .+++|+.|+|++|.|+.+. .+..+..+ +|+.|+|++|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~---------------~l~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER---------------ELDKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG---------------GGGGGTTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch---------------hhhhcccC-CcceEEccCCc
Confidence 4667777777777777765432 5666666666666665431 11113334 78888888888
Q ss_pred CCCC-C------hhhhcCCCCccEEE
Q psy13451 485 IDHI-E------DSVFAKYEACVQVI 503 (522)
Q Consensus 485 l~~~-~------~~~l~~l~~L~~L~ 503 (522)
+++- + ...+..+++|+.||
T Consensus 232 l~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 232 LCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CccccCcchhHHHHHHHHCcccCeEC
Confidence 8752 2 23567788888765
No 325
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.91 E-value=2.1e-05 Score=76.35 Aligned_cols=141 Identities=10% Similarity=-0.010 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC------ccchhhHHHHHH
Q psy13451 41 DDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS------YGTWFQRCYVLD 114 (522)
Q Consensus 41 ~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~------y~~W~~R~~il~ 114 (522)
.++|+..+.++ +.++...+. +++++..+.+++...++. ..++...+.++.
T Consensus 32 ~~~A~~~~~~a--------------~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~ 87 (307)
T 2ifu_A 32 YDSAASEYAKA--------------AVAFKNAKQ----------LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK 87 (307)
T ss_dssp HHHHHHHHHHH--------------HHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------------HHHHHHcCC----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 36677777766 234455555 688888888888877654 356777788888
Q ss_pred HhcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc------chHhhHHH
Q psy13451 115 HISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN------YSAWHYRS 182 (522)
Q Consensus 115 ~l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n------~saW~~r~ 182 (522)
.+ +++++++.++++++++.++. ..++...+.+... +. +++++++++++++..+.. ..++...+
T Consensus 88 ~~---g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~-~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 88 DL---QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD-LSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HT---TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC-HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 87 89999999999999986442 3577788888888 76 799999999999987754 45777788
Q ss_pred HHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcc
Q psy13451 183 KLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQS 222 (522)
Q Consensus 183 ~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s 222 (522)
.++..+ +.++++++++.+++.+.|.+..
T Consensus 163 ~~~~~~------------g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 163 RLLVRQ------------QKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHT------------TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHc------------CCHHHHHHHHHHHHHHHHHcCC
Confidence 888777 8899999999999999887764
No 326
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.88 E-value=2.9e-05 Score=62.04 Aligned_cols=84 Identities=4% Similarity=-0.085 Sum_probs=74.9
Q ss_pred CccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc------c
Q psy13451 102 SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN------Y 175 (522)
Q Consensus 102 ~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n------~ 175 (522)
+..+|..++.+.... ++++++++.++++++.+|.+..+|..++.+...++. +++++++++++++.+|.+ .
T Consensus 3 ~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQ---GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE-YTQAIQMCQQGLRYTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCccHHHHHH
Confidence 456788889888888 999999999999999999999999999999999998 799999999999999999 7
Q ss_pred hHhhHHHHHhchhC
Q psy13451 176 SAWHYRSKLLPLLY 189 (522)
Q Consensus 176 saW~~r~~ll~~l~ 189 (522)
.++..++.+...+.
T Consensus 79 ~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 79 KLQYRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666653
No 327
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.80 E-value=4.4e-06 Score=79.14 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=45.9
Q ss_pred cCcccEEEcCCCCCCCCCC----CCCCCCCCEEEccCCCCCCCC-hhhhcCCCCccEEEecCCCCcc
Q psy13451 450 CVYFQSLKLTHCSLSSLHV----FPHLPSLESLDVSHNAIDHIE-DSVFAKYEACVQVILTGNPVSA 511 (522)
Q Consensus 450 ~~~L~~L~Ls~n~l~~~~~----l~~~~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~ 511 (522)
.+.|+.|+|++|.|+++.. +..+++|+.|+|++|.|+++. ...+..+ +|+.|+|++|+++.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 3566777777777766543 347899999999999999873 2334444 89999999999975
No 328
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.75 E-value=0.0001 Score=65.88 Aligned_cols=156 Identities=9% Similarity=-0.156 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH------hCCCCccchhhHHHHHH
Q psy13451 42 DEALSLTSEVLRNIP-DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLL------AQPKSYGTWFQRCYVLD 114 (522)
Q Consensus 42 ~eal~~~~~~l~~np-~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~------~~pk~y~~W~~R~~il~ 114 (522)
++|......+ .-+| ....+|+..+.+....+. +++++..++.++. ..|....+|...+++..
T Consensus 9 ~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 77 (203)
T 3gw4_A 9 ALAERQAQAL-LAHPATASGARFMLGYVYAFMDR----------FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER 77 (203)
T ss_dssp HHHHHHHHHH-HTSTTTHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhCc----------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4555533333 3355 778899999999998887 6888888888888 55566788888999998
Q ss_pred HhcCCCChHHHHHHHHHHHhh---cC----CCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCC--cch----HhhHH
Q psy13451 115 HISRAPNYEKELELCNYYLEL---DE----RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFS--NYS----AWHYR 181 (522)
Q Consensus 115 ~l~~~~~~~~el~~~~~~l~~---d~----kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~--n~s----aW~~r 181 (522)
.. +++++++..+.++++. .+ ....++...+.+....+. +++++++++++++.... +.. ++...
T Consensus 78 ~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 78 MA---GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HT---TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hc---CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 88 8999999999999998 33 234567788888888887 78999999999975332 221 23556
Q ss_pred HHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchh
Q psy13451 182 SKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAW 224 (522)
Q Consensus 182 ~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W 224 (522)
+.+.... +.++++.+++.+++.+.......+
T Consensus 154 a~~~~~~------------g~~~~A~~~~~~al~~~~~~~~~~ 184 (203)
T 3gw4_A 154 GDLAQQE------------KNLLEAQQHWLRARDIFAELEDSE 184 (203)
T ss_dssp HHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHC------------cCHHHHHHHHHHHHHHHHHcCCHH
Confidence 6666555 788999999999998765554444
No 329
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.61 E-value=0.00031 Score=67.43 Aligned_cols=117 Identities=10% Similarity=-0.021 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh-------CCCCccchh
Q psy13451 41 DDEALSLTSEVLRNIPDIN------SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA-------QPKSYGTWF 107 (522)
Q Consensus 41 ~~eal~~~~~~l~~np~~~------t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-------~pk~y~~W~ 107 (522)
.++|+..+.+++.+.++.. .+++.-+.+....+. +++++..+++++.. .|....+++
T Consensus 131 ~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGY----------LKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 3889999999999765433 378888888888887 68888888888852 233346899
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy13451 108 QRCYVLDHISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEA 170 (522)
Q Consensus 108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~ 170 (522)
..+.++... ++++++++++++++++.+++ ..+|...+.+...++..++++++++.+++..
T Consensus 201 nlg~~y~~~---~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 201 NHAKALYLD---SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999 99999999999999987655 5689999999999996458999999999874
No 330
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.51 E-value=0.0012 Score=60.03 Aligned_cols=162 Identities=7% Similarity=-0.031 Sum_probs=124.6
Q ss_pred cCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHh
Q psy13451 37 NQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116 (522)
Q Consensus 37 ~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l 116 (522)
.+++ ++|+..+.+++.. .+..+++.-+.++.. +- . .+-+++++..+++++. +.+..+++..+.++..-
T Consensus 31 ~~~~-~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g-~-----~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g 98 (212)
T 3rjv_A 31 SGDY-QKAEYWAQKAAAQ--GDGDALALLAQLKIR-NP-Q-----QADYPQARQLAEKAVE--AGSKSGEIVLARVLVNR 98 (212)
T ss_dssp HTCH-HHHHHHHHHHHHT--TCHHHHHHHHHHTTS-ST-T-----SCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCG
T ss_pred CCCH-HHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CC-C-----CCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcC
Confidence 3444 8899999999875 688999998888876 31 0 0015888888888854 67889999999988762
Q ss_pred c-CCCChHHHHHHHHHHHhhcC--CCcchhhHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhC
Q psy13451 117 S-RAPNYEKELELCNYYLELDE--RNFHCWDYRRYVTDR----HKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLY 189 (522)
Q Consensus 117 ~-~~~~~~~el~~~~~~l~~d~--kn~~aW~~R~~~l~~----~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~ 189 (522)
. ...++++++.++.++++.++ .+..++..-+.+... .+. +++++.++.++++. +.+..|++..+.+...-.
T Consensus 99 ~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d-~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~ 176 (212)
T 3rjv_A 99 QAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED-DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGE 176 (212)
T ss_dssp GGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC-HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCB
T ss_pred CCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCC
Confidence 1 14789999999999999998 468999999999987 333 68999999999998 677779888888776532
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHHhcCC
Q psy13451 190 PDPNNHLPIEQDKYVNEFSMVESAVFTEP 218 (522)
Q Consensus 190 ~~~~~~~~~~~~~~~~el~~~~~ai~~~p 218 (522)
.. .....+++++.++.+|+...+
T Consensus 177 gg------~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 177 KG------FIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp TT------TBCCCHHHHHHHHHHHHHHTC
T ss_pred CC------CCCCCHHHHHHHHHHHHHcCC
Confidence 10 001368999999999998743
No 331
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.49 E-value=0.00044 Score=58.53 Aligned_cols=134 Identities=8% Similarity=-0.050 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCc------cchhhHHHHHHHhcCCCChHHHHHHHHHH
Q psy13451 59 NSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY------GTWFQRCYVLDHISRAPNYEKELELCNYY 132 (522)
Q Consensus 59 ~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y------~~W~~R~~il~~l~~~~~~~~el~~~~~~ 132 (522)
..++...+.+....+. +++++..+..++...|+.. .++...+.+.... +++++++..++++
T Consensus 9 ~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a 75 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGN----------FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL---GEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Confidence 4567778888887776 6888888888888766644 4788888888888 8999999999999
Q ss_pred HhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCc------chHhhHHHHHhchhCCCCCCCCccch
Q psy13451 133 LELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSN------YSAWHYRSKLLPLLYPDPNNHLPIEQ 200 (522)
Q Consensus 133 l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n------~saW~~r~~ll~~l~~~~~~~~~~~~ 200 (522)
++..++. ..++...+.+....+. +++++++++++++..... ..++...+.+....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~------------ 142 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL------------ 142 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc------------
Confidence 9987664 5578888888888888 799999999999863322 23455555555555
Q ss_pred hHHHHHHHHHHHHHhcCC
Q psy13451 201 DKYVNEFSMVESAVFTEP 218 (522)
Q Consensus 201 ~~~~~el~~~~~ai~~~p 218 (522)
+.++++++++.+++.+..
T Consensus 143 g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 143 GNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp TCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 778999999999987644
No 332
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.49 E-value=0.0012 Score=64.75 Aligned_cols=129 Identities=9% Similarity=-0.001 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCC
Q psy13451 41 DDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKAT-LAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRA 119 (522)
Q Consensus 41 ~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~-~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~ 119 (522)
-.+|+.+++++++++|++..+|-.+..+...+... .........+..++... ..+...|....++.--.......
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~-~a~~~~~~~a~~~~alal~~l~~--- 290 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI-VTLPELNNLSIIYQIKAVSALVK--- 290 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH-HTCGGGTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH-HhcccCCcCHHHHHHHHHHHHhC---
Confidence 37899999999999999999999877766532211 01122223345555522 34456677665554444444434
Q ss_pred CChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc
Q psy13451 120 PNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175 (522)
Q Consensus 120 ~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~ 175 (522)
+++++++..+++++.++| +..+|.-.+++....|. ++++++.+.+++..+|+..
T Consensus 291 gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~-~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGM-NREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSCSHH
T ss_pred CCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCcC
Confidence 899999999999999996 57788899999999998 7999999999999999885
No 333
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.49 E-value=0.00015 Score=69.01 Aligned_cols=133 Identities=5% Similarity=-0.170 Sum_probs=111.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC--ccchh
Q psy13451 30 TIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS--YGTWF 107 (522)
Q Consensus 30 ~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~--y~~W~ 107 (522)
....+...|+| ++|.+.++.++..+|++. +.+.|+.+..+.++ +.+++..++.+....+.. ..+++
T Consensus 108 yA~~L~~~g~y-~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r----------~~dA~~~l~~a~~~~d~~~~~~a~~ 175 (282)
T 4f3v_A 108 FAACEAAQGNY-ADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER----------WTDVIDQVKSAGKWPDKFLAGAAGV 175 (282)
T ss_dssp HHHHHHHHTCH-HHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC----------HHHHHHHHTTGGGCSCHHHHHHHHH
T ss_pred HHHHHHHCCCH-HHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC----------HHHHHHHHHHhhccCCcccHHHHHH
Confidence 34455666777 889999999999999999 99999999999888 799999998776643222 35899
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHhhc--CC-CcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhh
Q psy13451 108 QRCYVLDHISRAPNYEKELELCNYYLELD--ER-NFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWH 179 (522)
Q Consensus 108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d--~k-n~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~ 179 (522)
+.+.++..+ +.+++++.++++++.-. |. ...++.+++.++..+++ .+++.+.+.+++..+|. --+|.
T Consensus 176 ~LG~al~~L---G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr-~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 176 AHGVAAANL---ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN-ESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHC---CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCc-HHHHH
Confidence 999999999 99999999999998644 55 55699999999999998 69999999999999998 55443
No 334
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.48 E-value=0.00024 Score=70.82 Aligned_cols=154 Identities=10% Similarity=-0.053 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCC------CccchhhHHHHHHHhcCCCChHHHHHHHHHHH
Q psy13451 60 SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPK------SYGTWFQRCYVLDHISRAPNYEKELELCNYYL 133 (522)
Q Consensus 60 t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk------~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l 133 (522)
-.+.+++......+. +++++..+++++...++ ...+++..+.+...+ +++.+++..+.+++
T Consensus 102 ~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~---~~~~~A~~~~~~al 168 (378)
T 3q15_A 102 YSLFFRGMYEFDQKE----------YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM---KQTHVSMYHILQAL 168 (378)
T ss_dssp HHHHHHHHHHHHTTC----------HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC----------HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc---CCcHHHHHHHHHHH
Confidence 367788888888777 79999999999986432 446788888888888 89999999999999
Q ss_pred hhcCCC-------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcC------CcchHhhHHHHHhchhCCCCCCCCccch
Q psy13451 134 ELDERN-------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANF------SNYSAWHYRSKLLPLLYPDPNNHLPIEQ 200 (522)
Q Consensus 134 ~~d~kn-------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~------~n~saW~~r~~ll~~l~~~~~~~~~~~~ 200 (522)
+..++. ..++...+.+....+. ++++++++.++++... .-..+++..+.+....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~------------ 235 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKH-YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS------------ 235 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC------------
Confidence 986653 3467788888888888 7999999999998632 1235677788888777
Q ss_pred hHHHHHHHHHHHHHh-----cCCCCcchhhHHHHHhccCCCccc
Q psy13451 201 DKYVNEFSMVESAVF-----TEPKDQSAWFYQRWLLGERTSPVQ 239 (522)
Q Consensus 201 ~~~~~el~~~~~ai~-----~~p~~~s~W~y~~~ll~~~~~~~~ 239 (522)
+.++++++++.+++. .+|....++...+.+....++...
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 279 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQK 279 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHH
Confidence 789999999999999 888888888888888888877654
No 335
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.37 E-value=0.0033 Score=62.10 Aligned_cols=157 Identities=14% Similarity=-0.075 Sum_probs=118.6
Q ss_pred HhcCCCCHHHHHHHHHHHHhCCCchH-----HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccc----
Q psy13451 35 RKNQEYDDEALSLTSEVLRNIPDINS-----LWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGT---- 105 (522)
Q Consensus 35 ~~~~~~~~eal~~~~~~l~~np~~~t-----~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~---- 105 (522)
...|++ ++|+..+.+++...|.... +++..+.+....+. +++++..++.++...|+.-..
T Consensus 25 ~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 25 INDGNP-DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE----------LTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHTTCH-HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCH-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 345555 8899999999999986643 56677777777776 688888888888876655433
Q ss_pred --hhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCC--------CcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcc
Q psy13451 106 --WFQRCYVLDHISRAPNYEKELELCNYYLELDER--------NFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNY 175 (522)
Q Consensus 106 --W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~k--------n~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~ 175 (522)
..+.+.+.... +++++++..++++++..++ ...++...+.+....+. ++++.+++.+++...+...
T Consensus 94 ~~~~~la~~~~~~---G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 94 WSLIQQSEILFAQ---GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-LDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhccC
Confidence 45667777676 8999999999999997643 33456667888888888 7999999999999877532
Q ss_pred -----hHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCC
Q psy13451 176 -----SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEP 218 (522)
Q Consensus 176 -----saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p 218 (522)
.+|...+.+.... +.++++..++.+++...+
T Consensus 170 ~~~~~~~~~~la~~~~~~------------g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 170 PQQQLQCLAMLIQCSLAR------------GDLDNARSQLNRLENLLG 205 (373)
T ss_dssp GGGGHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHHHh
Confidence 3556666666555 789999999999987743
No 336
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.37 E-value=5.1e-05 Score=66.75 Aligned_cols=60 Identities=13% Similarity=0.277 Sum_probs=37.1
Q ss_pred CcccEEEecCCCCCCcccccCCCCCCccEEEcCCCC-CCCC--CCCCCC----CCcCEEEccCCC-CC
Q psy13451 387 AHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCS-LSSL--HVFPHL----PSLESLDVSHNA-PN 446 (522)
Q Consensus 387 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l----~~L~~L~ls~N~-l~ 446 (522)
..|+.||+++|.++......+.++++|+.|+|++|. |++- ..+..+ ++|+.|++++|. |+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 357777777777766555666677777777777773 5542 223332 357777777663 54
No 337
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.34 E-value=5.8e-05 Score=66.42 Aligned_cols=85 Identities=11% Similarity=0.109 Sum_probs=59.8
Q ss_pred cccCCCCCCccEEEcCCCCCCC--CCCCCCCCCcCEEEccCCC-CCcc-----c-----cCcccEEEcCCCC-CCCCCC-
Q psy13451 404 LRHLTPLVACESLKLTHCSLSS--LHVFPHLPSLESLDVSHNA-PNII-----L-----CVYFQSLKLTHCS-LSSLHV- 468 (522)
Q Consensus 404 ~~~~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~ls~N~-l~~~-----~-----~~~L~~L~Ls~n~-l~~~~~- 468 (522)
|.....-..|+.||++++.|+. +..+..+++|+.|+|++|. ++.- . +++|+.|+|++|. |++.+.
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 4333333579999999999876 3467889999999999985 6531 1 2368888888874 776432
Q ss_pred -CCCCCCCCEEEccCCC-CCCC
Q psy13451 469 -FPHLPSLESLDVSHNA-IDHI 488 (522)
Q Consensus 469 -l~~~~~L~~L~Ls~N~-l~~~ 488 (522)
+..+++|+.|+|+++. |++.
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCCH
T ss_pred HHhcCCCCCEEECCCCCCCCch
Confidence 6667888888888774 6653
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.32 E-value=0.0047 Score=70.20 Aligned_cols=185 Identities=9% Similarity=-0.076 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCC
Q psy13451 21 VKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQP 100 (522)
Q Consensus 21 ~~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p 100 (522)
+..-..+.....+..+.|.+ +||++.|.++ ++..+|.....++.+++. ++++++++..+.+..+
T Consensus 1102 vn~p~vWsqLAKAql~~G~~-kEAIdsYiKA-----dD~say~eVa~~~~~lGk----------yEEAIeyL~mArk~~~ 1165 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMV-KEAIDSYIKA-----DDPSSYMEVVQAANTSGN----------WEELVKYLQMARKKAR 1165 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCH-HHHHHHHHhc-----CChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhcc
Confidence 33333444445555556666 7888888654 888888888888888776 4556666555554443
Q ss_pred C---------------------------CccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc
Q psy13451 101 K---------------------------SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRH 153 (522)
Q Consensus 101 k---------------------------~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~ 153 (522)
. +...|..-+..+... +.|++++.+|.++ ..|...+-++.++
T Consensus 1166 e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~e---g~YeeA~~~Y~kA--------~ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1166 ESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDE---KMYDAAKLLYNNV--------SNFGRLASTLVHL 1234 (1630)
T ss_pred cccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhc---CCHHHHHHHHHhh--------hHHHHHHHHHHHh
Confidence 3 223455555555555 7889999999886 4788888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhc-----------hhC--CCCCC-----CCccchhHHHHHHHHHHHHHh
Q psy13451 154 KVAPLKELNYSTEKIEANFSNYSAWHYRSKLLP-----------LLY--PDPNN-----HLPIEQDKYVNEFSMVESAVF 215 (522)
Q Consensus 154 ~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~-----------~l~--~~~~~-----~~~~~~~~~~~el~~~~~ai~ 215 (522)
+. ++++++.+.++ .|..+|..-.++.- .+. ..... ..-...+.+++++.++++++.
T Consensus 1235 ge-~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1235 GE-YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred CC-HHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 87 78999999888 55688874444431 000 00000 001123678899999999999
Q ss_pred cCCCCcchhhHHHHHhccCCCcc
Q psy13451 216 TEPKDQSAWFYQRWLLGERTSPV 238 (522)
Q Consensus 216 ~~p~~~s~W~y~~~ll~~~~~~~ 238 (522)
++|.+...|.....+..+-.+..
T Consensus 1309 LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1309 LERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred cChhHhHHHHHHHHHHHhCCHHH
Confidence 99999999999999988765533
No 339
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.29 E-value=0.0037 Score=61.38 Aligned_cols=163 Identities=9% Similarity=0.024 Sum_probs=109.6
Q ss_pred HHHHHHhCCCchHHHHH--HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCC-----
Q psy13451 48 TSEVLRNIPDINSLWNY--RKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAP----- 120 (522)
Q Consensus 48 ~~~~l~~np~~~t~wn~--R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~----- 120 (522)
.+.+...-|++.+||-+ |+.-+...+. + +-+.+++.+++++++.+|.+..+|..+.++........
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~---~----~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~ 255 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHGD---D----KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEK 255 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHCS---H----HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcCC---H----HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchh
Confidence 34566778888888875 4433332211 1 22689999999999999999999998888765331101
Q ss_pred ---ChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCc
Q psy13451 121 ---NYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLP 197 (522)
Q Consensus 121 ---~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~ 197 (522)
.+..++... .++..+|.+..++.=-+.+.-..+. +++++..+++++..||+ .-+|...+++....
T Consensus 256 ~~~~l~~a~~a~-~a~~~~~~~a~~~~alal~~l~~gd-~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~--------- 323 (372)
T 3ly7_A 256 QLAALNTEIDNI-VTLPELNNLSIIYQIKAVSALVKGK-TDESYQAINTGIDLEMS-WLNYVLLGKVYEMK--------- 323 (372)
T ss_dssp HHHHHHHHHHHH-HTCGGGTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHT---------
T ss_pred hHHHHHHHHHHH-HhcccCCcCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHC---------
Confidence 112222211 2335566655544333333333355 79999999999999974 56777888887766
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451 198 IEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233 (522)
Q Consensus 198 ~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~ 233 (522)
+..+++++.+.+|+.++|.++ .+.+...+...
T Consensus 324 ---G~~~eA~e~~~~AlrL~P~~~-t~~~~~~l~F~ 355 (372)
T 3ly7_A 324 ---GMNREAADAYLTAFNLRPGAN-TLYWIENGIFQ 355 (372)
T ss_dssp ---TCHHHHHHHHHHHHHHSCSHH-HHHHHHHSSSC
T ss_pred ---CCHHHHHHHHHHHHhcCCCcC-hHHHHhCceee
Confidence 889999999999999999996 56555555443
No 340
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.24 E-value=0.0024 Score=65.99 Aligned_cols=162 Identities=7% Similarity=-0.068 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-----hccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHH
Q psy13451 41 DDEALSLTSEVLRNIPDINSLWNYRKEVLLHM-----KATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDH 115 (522)
Q Consensus 41 ~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l-----~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~ 115 (522)
.++|+..+.+++.. .+..++...+.+.... +. +++++..+.+++.. .+..+|+..++++..
T Consensus 275 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~----------~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 275 PLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKN----------REQAISWYTKSAEQ--GDATAQANLGAIYFR 340 (490)
T ss_dssp HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCC----------HHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC----------HHHHHHHHHHHHhc--CCHHHHHHHHHHHHh
Confidence 36677777777654 5566777777766654 22 57888888888875 456788999998887
Q ss_pred hcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCC
Q psy13451 116 ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDR----HKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPD 191 (522)
Q Consensus 116 l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~----~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~ 191 (522)
.....++++++.++.++++. .+..+|.+-+.+... .+. ++++++++.++++.+ +..||.+.+.+...-...
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKD-EQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred CCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 51123788999999999987 578899999999887 444 689999999999864 678898888887752111
Q ss_pred CCCCCccchhHHHHHHHHHHHHHhcCCC---CcchhhHHHH
Q psy13451 192 PNNHLPIEQDKYVNEFSMVESAVFTEPK---DQSAWFYQRW 229 (522)
Q Consensus 192 ~~~~~~~~~~~~~~el~~~~~ai~~~p~---~~s~W~y~~~ 229 (522)
.+.+++++.++++|+..+|+ +..++.....
T Consensus 416 --------~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 416 --------ERDYVQAWAWFDTASTNDMNLFGTENRNITEKK 448 (490)
T ss_dssp --------CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred --------CCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence 15789999999999999954 7777765443
No 341
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.23 E-value=0.0015 Score=55.19 Aligned_cols=127 Identities=8% Similarity=0.031 Sum_probs=97.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC--
Q psy13451 31 IFEKRKNQEYDDEALSLTSEVLRNIPDIN------SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS-- 102 (522)
Q Consensus 31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~------t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~-- 102 (522)
.......|++ ++|+..+.+++.+.|+.. .++...+.+....+. +++++..++.++...++.
T Consensus 16 ~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 16 GNTHYLLGNF-RDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE----------FETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCH-HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhCC
Confidence 3344455665 889999999999877544 478888888888877 688888888888866554
Q ss_pred ----ccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q psy13451 103 ----YGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANF 172 (522)
Q Consensus 103 ----y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~ 172 (522)
..++...+++.... ++++++++.++++++..++. ..++...+.+....+. +++++++++++++.-.
T Consensus 85 ~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLL---QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN-HDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHH
Confidence 56788888888888 89999999999999875433 3456666777777777 6899999999887643
No 342
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.15 E-value=0.0058 Score=62.56 Aligned_cols=164 Identities=12% Similarity=-0.028 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc-CCCCh
Q psy13451 44 ALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS-RAPNY 122 (522)
Q Consensus 44 al~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~-~~~~~ 122 (522)
+..++..+...+|+ +++..+.++...+.. +-+++++..+.++....|....+|+.-+.++.... ...++
T Consensus 164 a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~-------~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 164 VERICKAALNTTDI---CYVELATVYQKKQQP-------EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp HHHHHHHHTTTCTT---HHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred HHHHHHHHHcCCHH---HHHHHHHHHHHcCCc-------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCH
Confidence 44455555566665 888888888775521 12689999999999999999999888888886542 34689
Q ss_pred HHHHHHHHHHHhhcCCCcchhhHHHHH-H--HhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccc
Q psy13451 123 EKELELCNYYLELDERNFHCWDYRRYV-T--DRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIE 199 (522)
Q Consensus 123 ~~el~~~~~~l~~d~kn~~aW~~R~~~-l--~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~ 199 (522)
++++.+++++. |.+..++..-+.+ . ...+. ++++++++.++++.+ +..|+++.+.++..-.. .
T Consensus 234 ~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d-~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g--------~ 299 (452)
T 3e4b_A 234 KTAQALLEKIA---PGYPASWVSLAQLLYDFPELGD-VEQMMKYLDNGRAAD--QPRAELLLGKLYYEGKW--------V 299 (452)
T ss_dssp HHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCC-HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSS--------S
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCC--------C
Confidence 99999999998 8999999999998 4 33343 689999999998665 88899999888763211 1
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccC
Q psy13451 200 QDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER 234 (522)
Q Consensus 200 ~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~ 234 (522)
...++++++++.+|. |++..+++.++.++...
T Consensus 300 ~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV---GREVAADYYLGQIYRRG 331 (452)
T ss_dssp CCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCC
Confidence 147899999999999 99999999998887664
No 343
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.12 E-value=0.0023 Score=64.31 Aligned_cols=120 Identities=14% Similarity=0.156 Sum_probs=83.3
Q ss_pred cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCCCCCCCCCcCEEEccCCCCCccc------cCcccEE
Q psy13451 383 MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL------CVYFQSL 456 (522)
Q Consensus 383 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L 456 (522)
+..+..++.+.+..+... .....|..+..++.+....+.+.. ..|..+.+|+.+.+..+ ++.++ +.+|+.+
T Consensus 249 f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccccceeEEcCCCcce-eeccccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence 445566666666655433 444556666666666555443221 24677788888888654 54443 5788888
Q ss_pred EcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCC
Q psy13451 457 KLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507 (522)
Q Consensus 457 ~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 507 (522)
++..+ ++.++. |.++.+|+.+.+..| ++.++..+|.+|++|+.+.+..+
T Consensus 326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 88644 777765 888999999999877 88888889999999999999765
No 344
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.10 E-value=0.0036 Score=67.40 Aligned_cols=166 Identities=7% Similarity=-0.108 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHH-HHHHHHHHhCCCCccchhhHHHHHHHhcCCCC
Q psy13451 43 EALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDREL-KLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN 121 (522)
Q Consensus 43 eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL-~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~ 121 (522)
++...|+++|..+|.++.+|..-..++...+. .+++. .+++.++..+|++..+|..-..+.+.. ++
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~----------~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~---~~ 393 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT----------DSTVITKYLKLGQQCIPNSAVLAFSLSEQYELN---TK 393 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC----------CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CC
Confidence 35678999999999999999998888887765 35776 899999999999999999888888887 77
Q ss_pred hHHHHHHHHHHHhhc-----------CC-----------CcchhhHHHHHHHhcCCCCHHHHHHHHHHHHh-cCCcchHh
Q psy13451 122 YEKELELCNYYLELD-----------ER-----------NFHCWDYRRYVTDRHKVAPLKELNYSTEKIEA-NFSNYSAW 178 (522)
Q Consensus 122 ~~~el~~~~~~l~~d-----------~k-----------n~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~-~~~n~saW 178 (522)
++++-+.++++++.- |. +-.+|..-.-+..+.+. .+.+-+.+.++++. .+.....|
T Consensus 394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~-l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG-LAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHTGGGSCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCChHHH
Confidence 899999999999752 43 23468777777666655 57788888999987 55556777
Q ss_pred hHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchh-hHHHHHhcc
Q psy13451 179 HYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAW-FYQRWLLGE 233 (522)
Q Consensus 179 ~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W-~y~~~ll~~ 233 (522)
..-+.+-.... +..+.+...+..++...|++...| .|..++...
T Consensus 473 i~~A~lE~~~~-----------~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 473 LENAYIEYHIS-----------KDTKTACKVLELGLKYFATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHHHHHHTTT-----------SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-----------CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC
Confidence 65444333331 235788889999999999999999 666665543
No 345
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.03 E-value=0.024 Score=58.40 Aligned_cols=166 Identities=13% Similarity=-0.028 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc-CCC
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS-RAP 120 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~-~~~ 120 (522)
++|+..+.+++..+ +..++...+.++....-. ..-+++++..+++++.. .+..+++..+.+..... ...
T Consensus 204 ~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~------~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 204 AISAQWYRKSATSG--DELGQLHLADMYYFGIGV------TQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS------CCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCC------CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCC
Confidence 56677777766543 455666666655541000 00156777777777764 45677777787777621 137
Q ss_pred ChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCC
Q psy13451 121 NYEKELELCNYYLELDERNFHCWDYRRYVTDRH-----KVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNH 195 (522)
Q Consensus 121 ~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~-----~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~ 195 (522)
++++++.+++++++. .+..++...+.+.... +. +++++.++.++++.+ +..||.+.+.+.....
T Consensus 274 d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~-~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~~g------ 342 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKN-REQAISWYTKSAEQG--DATAQANLGAIYFRLG------ 342 (490)
T ss_dssp CHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCC-HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSC------
T ss_pred CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC-HHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCC------
Confidence 788999999998865 4567888888887765 33 688899999988864 5678888888776541
Q ss_pred CccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhcc
Q psy13451 196 LPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGE 233 (522)
Q Consensus 196 ~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~ 233 (522)
....++++++++.+++.. ++..+|++.+.++..
T Consensus 343 ---~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~ 375 (490)
T 2xm6_A 343 ---SEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQ 375 (490)
T ss_dssp ---CHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred ---CcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence 125788999999999987 678899998888866
No 346
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.03 E-value=0.00052 Score=61.47 Aligned_cols=60 Identities=8% Similarity=0.042 Sum_probs=34.4
Q ss_pred CcccEEEcCCCCCCCCCC------CCCCCCCCEEEccCC---CCCCCC----hhhhcCCCCccEEEecCCCCc
Q psy13451 451 VYFQSLKLTHCSLSSLHV------FPHLPSLESLDVSHN---AIDHIE----DSVFAKYEACVQVILTGNPVS 510 (522)
Q Consensus 451 ~~L~~L~Ls~n~l~~~~~------l~~~~~L~~L~Ls~N---~l~~~~----~~~l~~l~~L~~L~L~~N~l~ 510 (522)
..|+.|+|++|.|++.+. +.....|+.|+|++| .+.... ...+..-+.|..|+++.|.+.
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 345555555555544321 555667888888765 333321 234556677888888776544
No 347
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.03 E-value=0.012 Score=60.09 Aligned_cols=169 Identities=11% Similarity=-0.054 Sum_probs=133.7
Q ss_pred CHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHH-HhcCC
Q psy13451 41 DDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLD-HISRA 119 (522)
Q Consensus 41 ~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~-~l~~~ 119 (522)
.++|+..+.+++..+|....+++.-+.++...... ..-+++++..++++. |.+..+++..+.++. .. ..
T Consensus 195 ~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~------~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~-~~ 264 (452)
T 3e4b_A 195 QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLG------TPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFP-EL 264 (452)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGS------SCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSG-GG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC------CCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCC-CC
Confidence 47899999999999999999988888888654110 001688999999988 999999999999843 22 35
Q ss_pred CChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc---CCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCC
Q psy13451 120 PNYEKELELCNYYLELDERNFHCWDYRRYVTDRH---KVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHL 196 (522)
Q Consensus 120 ~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~---~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~ 196 (522)
+++++++.++.++++.+ +..++..-+.+...- ...++++++++.++. +.+..|+++.+.+...=..
T Consensus 265 ~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g------ 333 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRAAD--QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYL------ 333 (452)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTT------
T ss_pred CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCC------
Confidence 89999999999998654 888999999988742 123689999999999 8899999999987765211
Q ss_pred ccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccC
Q psy13451 197 PIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER 234 (522)
Q Consensus 197 ~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~ 234 (522)
....+++++.++.+|.. +++..+.+..+.+...+
T Consensus 334 --~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 334 --GKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQG 367 (452)
T ss_dssp --SSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSC
T ss_pred --CCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhC
Confidence 11468999999999986 57788888888777654
No 348
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.00 E-value=0.0047 Score=54.70 Aligned_cols=132 Identities=8% Similarity=-0.071 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH------hCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh--
Q psy13451 27 LMETIFEKRKNQEYDDEALSLTSEVLR------NIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLA-- 98 (522)
Q Consensus 27 ~~~~~~~~~~~~~~~~eal~~~~~~l~------~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-- 98 (522)
...........|++ ++|+..+.+++. ..|....+++..+.+....+. +++++..+..++..
T Consensus 29 ~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~ 97 (203)
T 3gw4_A 29 RFMLGYVYAFMDRF-DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN----------WDAARRCFLEERELLA 97 (203)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHH
Confidence 33444455566766 789999999999 566778889999999999887 68888888888886
Q ss_pred -CCC----CccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcc------hhhHHHHHHHhcCCCCHHHHHHHHHH
Q psy13451 99 -QPK----SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFH------CWDYRRYVTDRHKVAPLKELNYSTEK 167 (522)
Q Consensus 99 -~pk----~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~------aW~~R~~~l~~~~~~~~~el~~~~~~ 167 (522)
.|. ...++...+++.... +++++++..++++++..++.-. ++...+.+....+. ++++++++.++
T Consensus 98 ~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a 173 (203)
T 3gw4_A 98 SLPEDPLAASANAYEVATVALHF---GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN-LLEAQQHWLRA 173 (203)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HcCccHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHH
Confidence 442 346688889998888 8999999999999986543322 23667777778887 68999999999
Q ss_pred HHhcCC
Q psy13451 168 IEANFS 173 (522)
Q Consensus 168 i~~~~~ 173 (522)
++.-..
T Consensus 174 l~~~~~ 179 (203)
T 3gw4_A 174 RDIFAE 179 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886443
No 349
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.97 E-value=0.0028 Score=63.68 Aligned_cols=103 Identities=17% Similarity=0.342 Sum_probs=66.2
Q ss_pred cccCCCCCCccEEEcCCCCCCCC--CCCCCCCCcCEEEccCCCCCccc------cCcccEEEcCCCCCCCCCC--CCCCC
Q psy13451 404 LRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSLSSLHV--FPHLP 473 (522)
Q Consensus 404 ~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~ls~N~l~~~~------~~~L~~L~Ls~n~l~~~~~--l~~~~ 473 (522)
..+|.++..|+.+.+..+.. .+ ..|..++.|+.+.+. +.++.++ +.+|+.+.+..+ ++.++. |.++.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 34566667777776654432 22 246666677777665 3344333 456777777543 555544 77788
Q ss_pred CCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCCc
Q psy13451 474 SLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510 (522)
Q Consensus 474 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 510 (522)
+|+.+.+..+ ++.+...+|.+|.+|+.+.+.+|...
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 8888888544 77777778888888888888877543
No 350
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.96 E-value=0.0033 Score=62.69 Aligned_cols=121 Identities=12% Similarity=0.222 Sum_probs=79.3
Q ss_pred cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCccc
Q psy13451 383 MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQ 454 (522)
Q Consensus 383 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~ 454 (522)
+.....|+.+.+..+ +.......|.++..|+.+.+..+ ++.++ .|..+.+|+.+.+..+ +..++ +.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 444556666666544 33244456667777777777655 44443 4667777777777543 33332 56778
Q ss_pred EEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCC
Q psy13451 455 SLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507 (522)
Q Consensus 455 ~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 507 (522)
.+.+.++.++.++. |.++.+|+.+.|..+ ++.+...+|.+|.+|+.+.+..+
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 88887777777665 777888888888644 67777777888888887777544
No 351
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.80 E-value=0.0052 Score=61.21 Aligned_cols=113 Identities=17% Similarity=0.256 Sum_probs=88.4
Q ss_pred cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCccc
Q psy13451 383 MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQ 454 (522)
Q Consensus 383 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~ 454 (522)
+..+..|+.+.+..+ ++......|.++.+|+.+.+..+ ++.++ .|..+++|+.+.+.++.++.++ +.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 667888999999776 55455677888899999998654 55554 5888999999999988887664 57899
Q ss_pred EEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCc
Q psy13451 455 SLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEAC 499 (522)
Q Consensus 455 ~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L 499 (522)
.+.|..+ ++.++. |.++.+|+.+.+..+ ++.+...+|.+++.+
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 9999754 777765 899999999999755 777777788887544
No 352
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.72 E-value=0.013 Score=56.38 Aligned_cols=159 Identities=8% Similarity=-0.053 Sum_probs=121.5
Q ss_pred cCCCCHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCC------CCccchhh
Q psy13451 37 NQEYDDEALSLTSEVLRNIP--DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQP------KSYGTWFQ 108 (522)
Q Consensus 37 ~~~~~~eal~~~~~~l~~np--~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p------k~y~~W~~ 108 (522)
.|++ ++|+..+.+.|..+| ++..+.-..-.++..+++ .+.+.+.++.+.+.+| +...+.--
T Consensus 113 ~g~~-eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r----------~d~A~k~l~~~~~~~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 113 LGDL-DKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN----------VSTASTIFDNYTNAIEDTVSGDNEMILNLA 181 (310)
T ss_dssp HTCH-HHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cCCH-HHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence 3555 899999999999997 899999999999999988 6899999999999999 44445555
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhhcCC--Cc-chhhHHHHHHHhcCCCCHHHHHHHHHHHHh----------cCCcc
Q psy13451 109 RCYVLDHISRAPNYEKELELCNYYLELDER--NF-HCWDYRRYVTDRHKVAPLKELNYSTEKIEA----------NFSNY 175 (522)
Q Consensus 109 R~~il~~l~~~~~~~~el~~~~~~l~~d~k--n~-~aW~~R~~~l~~~~~~~~~el~~~~~~i~~----------~~~n~ 175 (522)
-.|+-... +...+++++.+++.+.+..|. +. -.|+ +...++. ++++-+.++.+++. +|.|.
T Consensus 182 ea~v~l~~-g~~~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~-~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 182 ESYIKFAT-NKETATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRN-IAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHH-TCSTTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTC-HHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHh-CCccHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCC-HHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 57777666 445789999999999988886 22 2233 5566677 67777777777766 58898
Q ss_pred hHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcchhhH
Q psy13451 176 SAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFY 226 (522)
Q Consensus 176 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y 226 (522)
.+..+...+-..+ +. ++-+++.++...+|+++-+=.|
T Consensus 256 ~~LaN~i~l~~~l------------gk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 256 TFLANQITLALMQ------------GL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHHHHHHHHHT------------TC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHh------------Ch--HHHHHHHHHHHhCCCChHHHHH
Confidence 8887765555555 22 4668889999999999765544
No 353
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.68 E-value=0.0092 Score=46.36 Aligned_cols=74 Identities=8% Similarity=0.018 Sum_probs=54.6
Q ss_pred CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHh
Q psy13451 55 IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLE 134 (522)
Q Consensus 55 np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~ 134 (522)
+|++..+|..++.++...+... ...++...++++|+.+|++..++...+.+.... ++|++++..++++++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~-------~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~---g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQA-------MTDEVSLLLEQALQLEPYNEAALSLIANDHFIS---FRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTC-------CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHh
Confidence 5777888888888775432210 126777788888888888888888888877777 788888888888888
Q ss_pred hcCC
Q psy13451 135 LDER 138 (522)
Q Consensus 135 ~d~k 138 (522)
.+|.
T Consensus 72 ~~p~ 75 (93)
T 3bee_A 72 SNDP 75 (93)
T ss_dssp CCCT
T ss_pred hCCC
Confidence 8877
No 354
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.67 E-value=0.0027 Score=52.89 Aligned_cols=54 Identities=20% Similarity=0.115 Sum_probs=31.6
Q ss_pred EEEecCCCcc--cccCcCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCC
Q psy13451 369 ITNLSSLQLT--SIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSL 423 (522)
Q Consensus 369 ~L~ls~n~l~--~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 423 (522)
.++.++++|+ .+|. .-.++|+.|+|++|.|+...+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5677777776 6664 1223566666666666644444555555666666655544
No 355
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.59 E-value=0.024 Score=55.75 Aligned_cols=152 Identities=11% Similarity=-0.056 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCcc-----chhhHHHHHHHhcCCCChHHHHHHHHHHHh
Q psy13451 60 SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYG-----TWFQRCYVLDHISRAPNYEKELELCNYYLE 134 (522)
Q Consensus 60 t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~-----~W~~R~~il~~l~~~~~~~~el~~~~~~l~ 134 (522)
.+...++.+....+. +++++..++.++...|.... ++...+.+.... +++++++..+.+++.
T Consensus 15 ~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~ 81 (373)
T 1hz4_A 15 EFNALRAQVAINDGN----------PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK---GELTRSLALMQQTEQ 81 (373)
T ss_dssp HHHHHHHHHHHHTTC----------HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----------HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHH
Confidence 345566666666666 68999999999998887643 566677777777 899999999999999
Q ss_pred hcCCCcch------hhHHHHHHHhcCCCCHHHHHHHHHHHHhcC--------CcchHhhHHHHHhchhCCCCCCCCccch
Q psy13451 135 LDERNFHC------WDYRRYVTDRHKVAPLKELNYSTEKIEANF--------SNYSAWHYRSKLLPLLYPDPNNHLPIEQ 200 (522)
Q Consensus 135 ~d~kn~~a------W~~R~~~l~~~~~~~~~el~~~~~~i~~~~--------~n~saW~~r~~ll~~l~~~~~~~~~~~~ 200 (522)
..++.-.. ..+.+.+....+. +++++++++++++..+ ....++...+.+....
T Consensus 82 ~~~~~~~~~~~~~~~~~la~~~~~~G~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------------ 148 (373)
T 1hz4_A 82 MARQHDVWHYALWSLIQQSEILFAQGF-LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW------------ 148 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT------------
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh------------
Confidence 87765443 4567778888887 7899999999998752 3344566677777666
Q ss_pred hHHHHHHHHHHHHHhcCCCCcc-----hhhHHHHHhccCCCc
Q psy13451 201 DKYVNEFSMVESAVFTEPKDQS-----AWFYQRWLLGERTSP 237 (522)
Q Consensus 201 ~~~~~el~~~~~ai~~~p~~~s-----~W~y~~~ll~~~~~~ 237 (522)
+.++++..++.+++...|.... ++.....+....++.
T Consensus 149 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~ 190 (373)
T 1hz4_A 149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDL 190 (373)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCH
Confidence 7899999999999999886432 344444444444443
No 356
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.56 E-value=0.053 Score=58.30 Aligned_cols=175 Identities=8% Similarity=-0.057 Sum_probs=124.5
Q ss_pred cCCCCHHHH-HHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH----HhCCC----------
Q psy13451 37 NQEYDDEAL-SLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCL----LAQPK---------- 101 (522)
Q Consensus 37 ~~~~~~eal-~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l----~~~pk---------- 101 (522)
.|.. ++|. +.+.+++..+|....+|-.-..+....+. .+...++++..+....... ...|.
T Consensus 356 ~~~~-~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~---~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 356 KNTD-STVITKYLKLGQQCIPNSAVLAFSLSEQYELNTK---IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp HSCC-TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCcH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 3443 5787 99999999999999999888888777765 3444445555554432211 12353
Q ss_pred -CccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh-cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhh
Q psy13451 102 -SYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL-DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWH 179 (522)
Q Consensus 102 -~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~-d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~ 179 (522)
+..+|..-..+..+. +..+.+...+.++++. .+...+.|...+.+-...+...+.+...++++++..|.+...|.
T Consensus 432 ~~~~vWi~y~~~erR~---~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~ 508 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRI---QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYIN 508 (679)
T ss_dssp HHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHH
Confidence 345888888777777 7788999999999998 55668888876666656655468999999999999999999884
Q ss_pred HHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCC---CcchhhHHHHH
Q psy13451 180 YRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPK---DQSAWFYQRWL 230 (522)
Q Consensus 180 ~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~---~~s~W~y~~~l 230 (522)
.-..+.... +..+.+=..+++|+...|. ....|....-.
T Consensus 509 ~y~~fe~~~------------~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 509 KYLDFLIYV------------NEESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp HHHHHHHHH------------TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhC------------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 333333333 5678888999999999883 34566554333
No 357
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.52 E-value=0.0071 Score=51.43 Aligned_cols=100 Identities=17% Similarity=0.025 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhc-C-CCcchhhHHHHHHHhcCCCCHHHHHHHH
Q psy13451 88 ELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELD-E-RNFHCWDYRRYVTDRHKVAPLKELNYST 165 (522)
Q Consensus 88 eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d-~-kn~~aW~~R~~~l~~~~~~~~~el~~~~ 165 (522)
.-+.+...+..+|.+..+.+.=+|+|-+.....+.++.+.+++.+++.+ | ++-.|++|.+...-+++. +++++.+++
T Consensus 17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~-Y~~A~~y~~ 95 (152)
T 1pc2_A 17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-YEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC-HHHHHHHHH
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC-HHHHHHHHH
Confidence 3344455566788899999999999999722347889999999999999 7 778999999999999988 799999999
Q ss_pred HHHHhcCCcchHhhHHHHHhchh
Q psy13451 166 EKIEANFSNYSAWHYRSKLLPLL 188 (522)
Q Consensus 166 ~~i~~~~~n~saW~~r~~ll~~l 188 (522)
++++.+|.|-.|-+-+..+-.++
T Consensus 96 ~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 96 GLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999987766555444
No 358
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.52 E-value=0.054 Score=61.82 Aligned_cols=135 Identities=10% Similarity=-0.013 Sum_probs=84.8
Q ss_pred CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhh
Q psy13451 56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLEL 135 (522)
Q Consensus 56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~ 135 (522)
.+...+|...+......++ +++|++.+.++ +++.+|...+.+..++ ++|++.++++..+.+.
T Consensus 1102 vn~p~vWsqLAKAql~~G~----------~kEAIdsYiKA-----dD~say~eVa~~~~~l---GkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGM----------VKEAIDSYIKA-----DDPSSYMEVVQAANTS---GNWEELVKYLQMARKK 1163 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCC----------HHHHHHHHHhc-----CChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhh
Confidence 4667888888888888777 68888888654 7788888888888887 8888888888887776
Q ss_pred cCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHh
Q psy13451 136 DERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVF 215 (522)
Q Consensus 136 d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~ 215 (522)
++.. .+=.+-++++.++++ + ++++.+ + +..|...|...+..+... +.++++..++.+|
T Consensus 1164 ~~e~-~Idt~LafaYAKl~r-l-eele~f---I--~~~n~ad~~~iGd~le~e------------g~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1164 ARES-YVETELIFALAKTNR-L-AELEEF---I--NGPNNAHIQQVGDRCYDE------------KMYDAAKLLYNNV-- 1221 (1630)
T ss_pred cccc-cccHHHHHHHHhhcC-H-HHHHHH---H--hCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHhh--
Confidence 6332 222246666666644 2 234433 2 333445666555555544 5566666666654
Q ss_pred cCCCCcchhhHHHHHhccCCC
Q psy13451 216 TEPKDQSAWFYQRWLLGERTS 236 (522)
Q Consensus 216 ~~p~~~s~W~y~~~ll~~~~~ 236 (522)
+.|......+-+.++
T Consensus 1222 ------~ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A 1222 ------SNFGRLASTLVHLGE 1236 (1630)
T ss_pred ------hHHHHHHHHHHHhCC
Confidence 355555555555444
No 359
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.51 E-value=0.018 Score=44.71 Aligned_cols=67 Identities=12% Similarity=-0.040 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy13451 26 NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS 102 (522)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~ 102 (522)
..+..++.....+..+++|...+.++|.++|++..++...+.+....+. +++++...+.++..+|.+
T Consensus 10 ~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~----------y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 10 AAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR----------FQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCC
Confidence 3344455555566779999999999999999999999999999999888 899999999999999993
No 360
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.50 E-value=0.012 Score=58.96 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=80.0
Q ss_pred CcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCC-CCCCCCCCcCEEEccCCCCCcc---ccCcccEEEcCCCC
Q psy13451 387 AHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL-HVFPHLPSLESLDVSHNAPNII---LCVYFQSLKLTHCS 462 (522)
Q Consensus 387 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~ls~N~l~~~---~~~~L~~L~Ls~n~ 462 (522)
..|+.+.+..+. +......|..+..++.+.+..+...-. ..|..+..++.+....+.+... .+.+|+.+.+..+
T Consensus 230 ~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 230 TGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-
T ss_pred CCCceEEECCCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-
Confidence 455555554332 223334566667777777766533211 2466777777776665544321 2578888888754
Q ss_pred CCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCC
Q psy13451 463 LSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507 (522)
Q Consensus 463 l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 507 (522)
++.++. |..+.+|+.++|..+ ++.++..+|.+|.+|+.+.+..|
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 666665 889999999999754 88888889999999999999776
No 361
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.24 E-value=0.22 Score=47.04 Aligned_cols=172 Identities=9% Similarity=-0.072 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhc--c----------------ccHHHHHHHHHHHHHHHHHHHHh-----
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKA--T----------------LAEEELHELVDRELKLTKDCLLA----- 98 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~--~----------------~~~~~~~~~~~~eL~~~~~~l~~----- 98 (522)
+-.|.+++.++..+|+|...---=......-.. . ..++...+++..+.+....+|..
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~ 128 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGF 128 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 345889999999999997654433322222100 0 01112244555555555555543
Q ss_pred -------------------CCCCccchhhHHHHHHHhcC--CC------ChHHHHHHHHHHHhhcCC--CcchhhHHHHH
Q psy13451 99 -------------------QPKSYGTWFQRCYVLDHISR--AP------NYEKELELCNYYLELDER--NFHCWDYRRYV 149 (522)
Q Consensus 99 -------------------~pk~y~~W~~R~~il~~l~~--~~------~~~~el~~~~~~l~~d~k--n~~aW~~R~~~ 149 (522)
+|++..+++..+-+...... .. ...+.....++++++||+ +-.||.+.+.+
T Consensus 129 ~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~l 208 (301)
T 3u64_A 129 TREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKF 208 (301)
T ss_dssp HHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 34445555555555543211 11 257888999999999999 55699999999
Q ss_pred HHhc-----CCCCHHHHHHHHHHHHhcCC-cchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCcch
Q psy13451 150 TDRH-----KVAPLKELNYSTEKIEANFS-NYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSA 223 (522)
Q Consensus 150 l~~~-----~~~~~~el~~~~~~i~~~~~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~s~ 223 (522)
...+ +. .+++-+.++++++++|. |..++.+-+..+... .+.+++...++++++..+|+....
T Consensus 209 Y~~vPp~~gGd-~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~-----------~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 209 YAAAPESFGGG-MEKAHTAFEHLTRYCSAHDPDHHITYADALCIP-----------LNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHSCTTTTCC-HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT-----------TTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred HHhCCCccCCC-HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHcCCCCCCCC
Confidence 9986 33 58999999999999996 488887777655442 156888999999999999986444
Q ss_pred hh
Q psy13451 224 WF 225 (522)
Q Consensus 224 W~ 225 (522)
|.
T Consensus 277 ~~ 278 (301)
T 3u64_A 277 NK 278 (301)
T ss_dssp CH
T ss_pred hh
Confidence 53
No 362
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.16 E-value=0.066 Score=50.54 Aligned_cols=157 Identities=8% Similarity=-0.078 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC--CC-----CHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhc-cccHHHHHHHHHHH
Q psy13451 17 RSAKVKWYHNLMETIFEKRKNQ--EY-----DDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKA-TLAEEELHELVDRE 88 (522)
Q Consensus 17 ~~~k~~~y~~~~~~~~~~~~~~--~~-----~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~-~~~~~~~~~~~~~e 88 (522)
+....+-|....+..+.-.... .+ +.+.-+.-..+-..+|++..++.+.+.+....-. ....=........+
T Consensus 103 ~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A 182 (301)
T 3u64_A 103 YSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAA 182 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHH
Confidence 3344566776666655433221 11 1111234455677899999999999999877422 11000123346889
Q ss_pred HHHHHHHHHhCCC--CccchhhHHHHHHHhcC--CCChHHHHHHHHHHHhhcCC-CcchhhHHHHHHHhc-CCCCHHHHH
Q psy13451 89 LKLTKDCLLAQPK--SYGTWFQRCYVLDHISR--APNYEKELELCNYYLELDER-NFHCWDYRRYVTDRH-KVAPLKELN 162 (522)
Q Consensus 89 L~~~~~~l~~~pk--~y~~W~~R~~il~~l~~--~~~~~~el~~~~~~l~~d~k-n~~aW~~R~~~l~~~-~~~~~~el~ 162 (522)
....+++++++|+ .-.+|...+-+...+.+ .++.+++-++++++++++|. |..+..+-+..+... +. .++...
T Consensus 183 ~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd-~~~a~~ 261 (301)
T 3u64_A 183 VMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN-RAGFDE 261 (301)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC-HHHHHH
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC-HHHHHH
Confidence 9999999999999 56699999999988721 36899999999999999996 588888888877664 54 577789
Q ss_pred HHHHHHHhcCCc
Q psy13451 163 YSTEKIEANFSN 174 (522)
Q Consensus 163 ~~~~~i~~~~~n 174 (522)
++++++..+|+-
T Consensus 262 ~L~kAL~a~p~~ 273 (301)
T 3u64_A 262 ALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCGGG
T ss_pred HHHHHHcCCCCC
Confidence 999999988874
No 363
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.037 Score=55.42 Aligned_cols=167 Identities=11% Similarity=0.013 Sum_probs=112.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhCCCchH-----------------HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Q psy13451 31 IFEKRKNQEYDDEALSLTSEVLRNIPDINS-----------------LWNYRKEVLLHMKATLAEEELHELVDRELKLTK 93 (522)
Q Consensus 31 ~~~~~~~~~~~~eal~~~~~~l~~np~~~t-----------------~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~ 93 (522)
.....++|+| ++|++.+..++..+|+... +....+.++...+. ++++++.+.
T Consensus 11 a~~l~~~~~y-~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~----------~~~a~~~~~ 79 (434)
T 4b4t_Q 11 ARRLVNEKQY-NEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA----------KDKLREFIP 79 (434)
T ss_dssp HHHHHHHTCH-HHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHH
T ss_pred HHHHHHCCCH-HHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC----------HHHHHHHHH
Confidence 3344556666 6788888888888887543 45666777777766 688888888
Q ss_pred HHHHhCCCCccchhhH--HHHHHHh-cCCCChHHHHHHHHHHHhhcCCCcc------hhhHHHHHHHhcCCCCHHHHHHH
Q psy13451 94 DCLLAQPKSYGTWFQR--CYVLDHI-SRAPNYEKELELCNYYLELDERNFH------CWDYRRYVTDRHKVAPLKELNYS 164 (522)
Q Consensus 94 ~~l~~~pk~y~~W~~R--~~il~~l-~~~~~~~~el~~~~~~l~~d~kn~~------aW~~R~~~l~~~~~~~~~el~~~ 164 (522)
.++...++...+-..+ .-++..+ ...+.+++++.++.+++...++... ++..-+.+....+. +.++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l 158 (434)
T 4b4t_Q 80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ-YKDSLALI 158 (434)
T ss_dssp HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC-hHHHHHHH
Confidence 8888766654432221 1112222 1246789999999999986654432 45556666777777 68999999
Q ss_pred HHHHHhc------CCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcCCCCc
Q psy13451 165 TEKIEAN------FSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQ 221 (522)
Q Consensus 165 ~~~i~~~------~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~p~~~ 221 (522)
.+++..- +....++...+.+...+ +.++++..++++++.+.|...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~A~~~~~~al~~~~~~~ 209 (434)
T 4b4t_Q 159 NDLLREFKKLDDKPSLVDVHLLESKVYHKL------------RNLAKSKASLTAARTAANSIY 209 (434)
T ss_dssp HHHHHHHTTSSCSTHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHh------------CcHHHHHHHHHHHHHHhhcCC
Confidence 8888752 22334666677766666 788999999999987765443
No 364
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.01 E-value=0.0031 Score=56.40 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=41.2
Q ss_pred CcccEEEcCCCCCCCCCC------CCCCCCCCEEEccCCCCCCCC----hhhhcCCCCccEEEecCC
Q psy13451 451 VYFQSLKLTHCSLSSLHV------FPHLPSLESLDVSHNAIDHIE----DSVFAKYEACVQVILTGN 507 (522)
Q Consensus 451 ~~L~~L~Ls~n~l~~~~~------l~~~~~L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~L~~N 507 (522)
..|+.|+|++|.|.+... +...+.|++|+|+.|.|++.. ...+..-+.|+.|+|++|
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 456666666666655331 456678999999999999864 345666678999999865
No 365
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.72 E-value=0.061 Score=45.65 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=72.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhC-C-CCccchhhHHHHHHHhcCCCChHH
Q psy13451 47 LTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQ-P-KSYGTWFQRCYVLDHISRAPNYEK 124 (522)
Q Consensus 47 ~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-p-k~y~~W~~R~~il~~l~~~~~~~~ 124 (522)
.|...+..+|...++...=+.+|.+... + ..+++.+.+++.+++.+ | +.-.++++.+-...++ ++|++
T Consensus 20 ~y~~e~~~~~~~~~~~F~ya~~Lv~S~~---~----~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl---~~Y~~ 89 (152)
T 1pc2_A 20 KFQSEKAAGSVSKSTQFEYAWCLVRSKY---N----DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL---KEYEK 89 (152)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHTCSS---H----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT---SCHHH
T ss_pred HHHHHHccCCCcHHHHHHHHHHHHcCCC---H----HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHc---cCHHH
Confidence 3444455667666776666777776442 1 12589999999999998 7 5677888888888777 99999
Q ss_pred HHHHHHHHHhhcCCCcchhhHHHHHHHh
Q psy13451 125 ELELCNYYLELDERNFHCWDYRRYVTDR 152 (522)
Q Consensus 125 el~~~~~~l~~d~kn~~aW~~R~~~l~~ 152 (522)
++.+++++|+++|.|-+|-.-+.-+-+.
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk~~ie~~ 117 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELERLIDKA 117 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987666555444
No 366
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.47 E-value=0.098 Score=50.19 Aligned_cols=156 Identities=9% Similarity=-0.046 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCC--CCccchhhHHHHHHHhcCCCC
Q psy13451 44 ALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQP--KSYGTWFQRCYVLDHISRAPN 121 (522)
Q Consensus 44 al~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--k~y~~W~~R~~il~~l~~~~~ 121 (522)
|+..+++++...+...++..+-+.++...+. ++++|+.+.+.|..+| .+..+..-...++.++ ++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~----------~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~---~r 151 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGD----------LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN---NN 151 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT---TC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC----------HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC---CC
Confidence 4555666666655667777888888888877 7999999999999997 7888888888888888 88
Q ss_pred hHHHHHHHHHHHhhcCC------CcchhhHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCc--chHhhHHHHHhchhCCCC
Q psy13451 122 YEKELELCNYYLELDER------NFHCWDYRRYVTDRHK-VAPLKELNYSTEKIEANFSN--YSAWHYRSKLLPLLYPDP 192 (522)
Q Consensus 122 ~~~el~~~~~~l~~d~k------n~~aW~~R~~~l~~~~-~~~~~el~~~~~~i~~~~~n--~saW~~r~~ll~~l~~~~ 192 (522)
.+.+.+.+.++.+.+|. ..-...--+|+--..+ ..+.+++.+++++.+..|.. ...... +...+
T Consensus 152 ~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~---- 224 (310)
T 3mv2_B 152 VSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQ---- 224 (310)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHH----
T ss_pred HHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHc----
Confidence 89999999999999983 2222222355554444 22689999999998887762 112222 33344
Q ss_pred CCCCccchhHHHHHHHHHHHHHhc----------CCCCcchhhHH
Q psy13451 193 NNHLPIEQDKYVNEFSMVESAVFT----------EPKDQSAWFYQ 227 (522)
Q Consensus 193 ~~~~~~~~~~~~~el~~~~~ai~~----------~p~~~s~W~y~ 227 (522)
++++++-+.++.++.. +|+|..+-...
T Consensus 225 --------g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 225 --------RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp --------TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 7888888888877776 57787776333
No 367
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.96 E-value=0.045 Score=54.69 Aligned_cols=120 Identities=13% Similarity=0.251 Sum_probs=86.3
Q ss_pred cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCCCCCCCCC--CCCCCCCcCEEEccCCCCCccc------cCccc
Q psy13451 383 MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIIL------CVYFQ 454 (522)
Q Consensus 383 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ls~N~l~~~~------~~~L~ 454 (522)
|..+..|+.+.+..+..+ .....|.++..|+.+.+. +.++.++ .|..+.+|+.+.+..+ ++.+. +.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 778899999999876554 556788899999999996 4566665 5889999999999765 55443 67899
Q ss_pred EEEcCCCCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCCCC
Q psy13451 455 SLKLTHCSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPV 509 (522)
Q Consensus 455 ~L~Ls~n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l 509 (522)
.+.+..+ ++.++. |.++.+|+.+++.++.... ..+..+.+|+.+.+..|.+
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 9999654 777765 9999999999999875432 4567788899998877654
No 368
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.90 E-value=0.11 Score=53.59 Aligned_cols=98 Identities=15% Similarity=0.086 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q psy13451 25 HNLMETIFEKRKNQEYDDEALSLTSEVLRN--------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCL 96 (522)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~eal~~~~~~l~~--------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l 96 (522)
+.+++.+...+.+|.| ++|+.++.++|.+ +|+..++.+.-+.++...++ +++|+.+++++|
T Consensus 310 ~~~le~a~~~~~qg~~-~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~----------~~eA~~~~~~aL 378 (490)
T 3n71_A 310 KDTLEKIDKARSEGLY-HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA----------YEEASHYARRMV 378 (490)
T ss_dssp HHHHHHHHHHHTTTCH-HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHH
Confidence 3566677777888888 8899999999987 55666788888888888887 566666666666
Q ss_pred H--------hCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhc
Q psy13451 97 L--------AQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELD 136 (522)
Q Consensus 97 ~--------~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d 136 (522)
. .+|.-....+.-+.++... ++++++..++.+++++-
T Consensus 379 ~i~~~~lG~~Hp~~a~~l~nLa~~~~~~---G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 379 DGYMKLYHHNNAQLGMAVMRAGLTNWHA---GHIEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH
Confidence 5 4556667777888888887 89999999999998764
No 369
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.53 E-value=0.16 Score=51.34 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Q psy13451 26 NLMETIFEKRKNQEYDDEALSLTSEVLRN--------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLL 97 (522)
Q Consensus 26 ~~~~~~~~~~~~~~~~~eal~~~~~~l~~--------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~ 97 (522)
..+..+......|.| ++|+.++.++|.+ +|+..+..+.-+.+....|+ +++|+.+++++|.
T Consensus 300 ~~le~~~~~~~~g~~-~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~----------~~eA~~~~~~aL~ 368 (433)
T 3qww_A 300 NVIEEFRRAKHYKSP-SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD----------WEGALKYGQKIIK 368 (433)
T ss_dssp HHHHHHHHHTTTSCH-HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCH-HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC----------HHHHHHHHHHHHH
Confidence 444444444555666 7899999999986 45556778888888888887 5666666666665
Q ss_pred --------hCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC
Q psy13451 98 --------AQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDE 137 (522)
Q Consensus 98 --------~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~ 137 (522)
.+|.-...++.-+.++... +++++++.++++++++-.
T Consensus 369 i~~~~lG~~Hp~~a~~l~nLa~~~~~q---g~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 369 PYSKHYPVYSLNVASMWLKLGRLYMGL---ENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHH
Confidence 4666677888888888888 899999999999997653
No 370
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.05 E-value=0.72 Score=38.06 Aligned_cols=115 Identities=9% Similarity=-0.108 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh---cCCCCHHH
Q psy13451 84 LVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDR---HKVAPLKE 160 (522)
Q Consensus 84 ~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~---~~~~~~~e 160 (522)
-+++++..+.++......... .+.+.... ...++++.++.++.+. .+..++..-+.+... ....++++
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g---~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQ---INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTT---SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcC---CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 368999999999987744433 55555554 6678899999999987 678899999988877 12336899
Q ss_pred HHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcC
Q psy13451 161 LNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTE 217 (522)
Q Consensus 161 l~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~ 217 (522)
+++++++.+. .+..|+++.+.+...=... ...++++++++.+|....
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~--------~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGV--------VKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSS--------CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCC--------CcCHHHHHHHHHHHHHCC
Confidence 9999999987 6788888888877652111 157899999999999874
No 371
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=93.87 E-value=0.1 Score=52.66 Aligned_cols=117 Identities=9% Similarity=-0.103 Sum_probs=68.2
Q ss_pred cchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHH
Q psy13451 104 GTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSK 183 (522)
Q Consensus 104 ~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ 183 (522)
.+|..-|-.+... +.|+++..+|+++ ..|...+-++-+++. ++++++.+.++ .+..+|..-..
T Consensus 123 ~a~~~IGd~~~~~---g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~-yq~AVea~~KA-----~~~~~Wk~v~~ 185 (449)
T 1b89_A 123 AHIQQVGDRCYDE---KMYDAAKLLYNNV--------SNFGRLASTLVHLGE-YQAAVDGARKA-----NSTRTWKEVCF 185 (449)
T ss_dssp -----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTC-HHHHHHHHHHH-----TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHh--------hhHHHHHHHHHHhcc-HHHHHHHHHHc-----CCchhHHHHHH
Confidence 3666666555555 6677777777766 466677777777776 57777777776 35556655433
Q ss_pred HhchhCCCCCC------C------------CccchhHHHHHHHHHHHHHhcCCCCcchhhHHHHHhccCCCc
Q psy13451 184 LLPLLYPDPNN------H------------LPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSP 237 (522)
Q Consensus 184 ll~~l~~~~~~------~------------~~~~~~~~~~el~~~~~ai~~~p~~~s~W~y~~~ll~~~~~~ 237 (522)
+......-..+ . .-...+.+++++.++++++..+|.+..+|.....+..+-.+.
T Consensus 186 aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~ 257 (449)
T 1b89_A 186 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 257 (449)
T ss_dssp HHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHH
Confidence 33322100000 0 001226788999999999999999999999999988876553
No 372
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.66 E-value=0.81 Score=37.74 Aligned_cols=112 Identities=5% Similarity=-0.141 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc-CCC
Q psy13451 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS-RAP 120 (522)
Q Consensus 42 ~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~-~~~ 120 (522)
++|+..+.++...+..... -+.+...... .++++..++++... .+..+++.-+.++..-. ...
T Consensus 12 ~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~----------~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC----LSLVSNSQIN----------KQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH----HHHHTCTTSC----------HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHHHHHHHHcCCCHhhh----HHHHHHcCCC----------HHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCc
Confidence 6788888888888754443 4444333222 35589999999886 67889999999988721 147
Q ss_pred ChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhc---CCCCHHHHHHHHHHHHhc
Q psy13451 121 NYEKELELCNYYLELDERNFHCWDYRRYVTDRH---KVAPLKELNYSTEKIEAN 171 (522)
Q Consensus 121 ~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~---~~~~~~el~~~~~~i~~~ 171 (522)
++++++.+++++.+. .+..+...-+.+...- ...++++++++.++.+..
T Consensus 76 d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 76 DLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 899999999999986 6788888888888871 233689999999999874
No 373
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=93.18 E-value=0.16 Score=51.19 Aligned_cols=142 Identities=9% Similarity=0.065 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC
Q psy13451 60 SLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERN 139 (522)
Q Consensus 60 t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn 139 (522)
.+|+.-|..+...+. ++++..++..+ ..|....-++.++ ++++++++++.++ .+
T Consensus 123 ~a~~~IGd~~~~~g~----------yeeA~~~Y~~a--------~n~~~LA~~L~~L---g~yq~AVea~~KA-----~~ 176 (449)
T 1b89_A 123 AHIQQVGDRCYDEKM----------YDAAKLLYNNV--------SNFGRLASTLVHL---GEYQAAVDGARKA-----NS 176 (449)
T ss_dssp --------------C----------TTTHHHHHHHT--------TCHHHHHHHHHTT---TCHHHHHHHHHHH-----TC
T ss_pred HHHHHHHHHHHHcCC----------HHHHHHHHHHh--------hhHHHHHHHHHHh---ccHHHHHHHHHHc-----CC
Confidence 478888877777776 78888988877 5788999999999 9999999999999 35
Q ss_pred cchhhHHHHHH------------------------------HhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhC
Q psy13451 140 FHCWDYRRYVT------------------------------DRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLY 189 (522)
Q Consensus 140 ~~aW~~R~~~l------------------------------~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~ 189 (522)
..+|.--..+. ++.|. +++.+.+++..+..++....+|..-+.+..+.
T Consensus 177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~-~eEai~lLe~aL~le~ah~~~ftel~il~~ky- 254 (449)
T 1b89_A 177 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY-FEELITMLEAALGLERAHMGMFTELAILYSKF- 254 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-
T ss_pred chhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCC-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-
Confidence 66665533333 33344 67888999999999999999999999888877
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHHhcCC-----CCcchhhHHHHHhccCCCcc
Q psy13451 190 PDPNNHLPIEQDKYVNEFSMVESAVFTEP-----KDQSAWFYQRWLLGERTSPV 238 (522)
Q Consensus 190 ~~~~~~~~~~~~~~~~el~~~~~ai~~~p-----~~~s~W~y~~~ll~~~~~~~ 238 (522)
..+++.+.++.+...+.+.| ++.-.|.=..++..+-+...
T Consensus 255 ---------~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 255 ---------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp ---------CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred ---------CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 34799999999999999999 99999998888887666543
No 374
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=92.93 E-value=0.3 Score=49.37 Aligned_cols=98 Identities=6% Similarity=0.096 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q psy13451 25 HNLMETIFEKRKNQEYDDEALSLTSEVLRN--------IPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCL 96 (522)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~eal~~~~~~l~~--------np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l 96 (522)
+.+...+.+.+++|.| ++|++.+.++|.+ +|...++.+.-+.++...++ +++|+.+++++|
T Consensus 288 ~~ll~~ie~~~~~g~~-~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~----------~~eA~~~~~~~L 356 (429)
T 3qwp_A 288 QESLKKIEELKAHWKW-EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL----------LEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccH-HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc----------HHHHHHHHHHHH
Confidence 4555666677788876 8899999999976 44455677777777777777 566666666666
Q ss_pred H--------hCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhc
Q psy13451 97 L--------AQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELD 136 (522)
Q Consensus 97 ~--------~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d 136 (522)
. .+|.-...++.-+.+.... +++++++.++.+++++-
T Consensus 357 ~i~~~~lg~~Hp~~a~~l~nLa~~~~~~---g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQ---GMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHSCSSCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHH
T ss_pred HhHHHHcCCCChHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHH
Confidence 5 4555556777778888877 88999999999998754
No 375
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.43 E-value=0.42 Score=37.35 Aligned_cols=70 Identities=14% Similarity=-0.029 Sum_probs=52.1
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhhc-------CCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHH
Q psy13451 110 CYVLDHISRAPNYEKELELCNYYLELD-------ERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS 182 (522)
Q Consensus 110 ~~il~~l~~~~~~~~el~~~~~~l~~d-------~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~ 182 (522)
|...... ++|.+++.+++.+++.. +....++.+-+.+..+++. +++++.+++++++.+|.+..+.+++.
T Consensus 12 G~~~~~~---~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~-~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 12 GKVAYTE---ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHT---TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHc---cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 4444444 78888888888888753 2345667777888888887 68888888888888888888877766
Q ss_pred H
Q psy13451 183 K 183 (522)
Q Consensus 183 ~ 183 (522)
+
T Consensus 88 ~ 88 (104)
T 2v5f_A 88 Y 88 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 376
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.19 E-value=0.42 Score=37.35 Aligned_cols=64 Identities=16% Similarity=0.075 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhC-------CCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHH
Q psy13451 85 VDRELKLTKDCLLAQ-------PKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTD 151 (522)
Q Consensus 85 ~~~eL~~~~~~l~~~-------pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~ 151 (522)
+..+...++.+++.. +....++.+-+.++.++ +++++++..++++++.+|.+-.+...++++-.
T Consensus 21 y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~---g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~ 91 (104)
T 2v5f_A 21 YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ---GDLDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Confidence 788888888888753 34567788888888888 89999999999999999999888777764443
No 377
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=91.60 E-value=4.5 Score=41.41 Aligned_cols=125 Identities=9% Similarity=0.012 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHH---------
Q psy13451 43 EALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVL--------- 113 (522)
Q Consensus 43 eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il--------- 113 (522)
++...++++|...|....+|..-...+...+. .+++...++.++.. |++...|..-....
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~----------~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l 265 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQ----------KEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDL 265 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHH
Confidence 46789999999999999999988888877665 58888999999999 99998886433221
Q ss_pred -HHhc---------------------------CCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHH
Q psy13451 114 -DHIS---------------------------RAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYST 165 (522)
Q Consensus 114 -~~l~---------------------------~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~ 165 (522)
.... ..+..+.+...++++ ...+..+|.|.....+-...+...+.+.+.++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0000 012345666777777 43334667776555444444433577888888
Q ss_pred HHHHhcCCcchHhh
Q psy13451 166 EKIEANFSNYSAWH 179 (522)
Q Consensus 166 ~~i~~~~~n~saW~ 179 (522)
.+++..|++...|.
T Consensus 345 ~al~~~~~~~~~~~ 358 (493)
T 2uy1_A 345 SGLLKHPDSTLLKE 358 (493)
T ss_dssp HHHHHCTTCHHHHH
T ss_pred HHHHHCCCCHHHHH
Confidence 88888777665543
No 378
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.31 E-value=0.82 Score=45.37 Aligned_cols=170 Identities=11% Similarity=-0.011 Sum_probs=102.6
Q ss_pred HHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCC------ccchh
Q psy13451 34 KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKS------YGTWF 107 (522)
Q Consensus 34 ~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~------y~~W~ 107 (522)
....|++ ++|++.+..++.+.+....+-..+ .+...++.-. ....-++.++.++..++...++. ..++.
T Consensus 65 y~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (434)
T 4b4t_Q 65 YVTMGAK-DKLREFIPHSTEYMMQFAKSKTVK-VLKTLIEKFE---QVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSI 139 (434)
T ss_dssp HHHHTCH-HHHHHHHHHTHHHHHTSCHHHHHH-HHHHHHHHHC---SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHH
T ss_pred HHHCCCH-HHHHHHHHHHHHHHHHccchHHHH-HHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 3445555 678888888888777665432221 1111111100 00001466777777776644333 34556
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC------cchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHH
Q psy13451 108 QRCYVLDHISRAPNYEKELELCNYYLELDERN------FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYR 181 (522)
Q Consensus 108 ~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn------~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r 181 (522)
..+.+.... +++.+++.++.+++..-.+. ..++...+.+....+. +.++..++++++...+..+..+...
T Consensus 140 ~la~~~~~~---g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 140 KLATLHYQK---KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN-LAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHH---TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHc---cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHhhcCCCchHHH
Confidence 667777777 89999999999998753332 3467777777777777 7899999999998766555444333
Q ss_pred HHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhcC
Q psy13451 182 SKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTE 217 (522)
Q Consensus 182 ~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~~ 217 (522)
+.+...+... ....+.++++..++.+++.+.
T Consensus 216 ~~~~~~~g~~-----~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 216 AELDLMSGIL-----HCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHH-----TTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHh
Confidence 3333222100 011267888888888888654
No 379
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.27 E-value=3.6 Score=34.14 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=56.4
Q ss_pred CCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCCCCccchhhHHHHHHHhc----CCCChHHHHHHHHH
Q psy13451 56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHIS----RAPNYEKELELCNY 131 (522)
Q Consensus 56 p~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~----~~~~~~~el~~~~~ 131 (522)
|..-+.++|=--++.+.... -.++.+.+++.+++..|. .||-++..+. ..++|.+++.+++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~--------di~~GI~LLe~l~~~~~~------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~ 102 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVN--------DERLGVKILTDIYKEAES------RRRECLYYLTIGCYKLGEYSMAKRYVDT 102 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHH--------HHHHHHHHHHHHHHHCCS------THHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHHHhcCcc------chhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55566666655545443221 147888888888888776 4666665441 34789999999999
Q ss_pred HHhhcCCCcchhhHHHHHHHh
Q psy13451 132 YLELDERNFHCWDYRRYVTDR 152 (522)
Q Consensus 132 ~l~~d~kn~~aW~~R~~~l~~ 152 (522)
+|+.+|.|-+|=.-+.-+-.+
T Consensus 103 lL~~eP~n~QA~~Lk~~Ie~~ 123 (144)
T 1y8m_A 103 LFEHERNNKQVGALKSMVEDK 123 (144)
T ss_dssp HHHTCCCCHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHH
Confidence 999999988886655554443
No 380
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=89.86 E-value=5.3 Score=40.89 Aligned_cols=187 Identities=13% Similarity=0.029 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCC
Q psy13451 21 VKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQP 100 (522)
Q Consensus 21 ~~~y~~~~~~~~~~~~~~~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p 100 (522)
+..=|++++++++..-.+++ +.+-.++.+++...| .+.+|..--......+.. .+.+...++.++... -.+|
T Consensus 11 i~~aR~vyer~l~~~P~~~~-e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~--~~~i~~~fe~al~~v----g~d~ 82 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMSKDY-RSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQK--KFKLYEVYEFTLGQF----ENYW 82 (493)
T ss_dssp -CCHHHHHHHHHHHHHTTCH-HHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC------CTHHHHHHHHHHS----TTCT
T ss_pred hHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCch--HHHHHHHHHHHHHHc----CCCc
Confidence 44556777777777766665 778899999999888 777998655555554321 122222333333221 2367
Q ss_pred CCccchhhHHHHHHHhc-CCCChHHHHHHHHHHHhhcCC-----------------------------------------
Q psy13451 101 KSYGTWFQRCYVLDHIS-RAPNYEKELELCNYYLELDER----------------------------------------- 138 (522)
Q Consensus 101 k~y~~W~~R~~il~~l~-~~~~~~~el~~~~~~l~~d~k----------------------------------------- 138 (522)
.++.+|.--...+.... ..+.++..-..|++++..-+.
T Consensus 83 ~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~ 162 (493)
T 2uy1_A 83 DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQ 162 (493)
T ss_dssp TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHH
Confidence 77777764443322110 001222333344444432111
Q ss_pred --------CcchhhHHHHHHHhcCC--CCH------HHHHHHHHHHHhcCCcchHhhHHHHHhchhCCCCCCCCccchhH
Q psy13451 139 --------NFHCWDYRRYVTDRHKV--APL------KELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDK 202 (522)
Q Consensus 139 --------n~~aW~~R~~~l~~~~~--~~~------~el~~~~~~i~~~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~ 202 (522)
+...|.. ++--..+. ..+ .-...+++++...|.....|..-...+... +.
T Consensus 163 ~~~~~~~~s~~~W~~--y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~------------~~ 228 (493)
T 2uy1_A 163 IQPLIRGWSVKNAAR--LIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI------------GQ 228 (493)
T ss_dssp HHHHHHTCSHHHHHH--HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT------------TC
T ss_pred HHHHHhhccHHHHHH--HHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc------------CC
Confidence 2223311 11111111 011 124578889999999999998766555443 46
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhHHHHH
Q psy13451 203 YVNEFSMVESAVFTEPKDQSAWFYQRWL 230 (522)
Q Consensus 203 ~~~el~~~~~ai~~~p~~~s~W~y~~~l 230 (522)
.+++.+.+.+|+.. |.+...|.+..-.
T Consensus 229 ~~~ar~i~erAi~~-P~~~~l~~~y~~~ 255 (493)
T 2uy1_A 229 KEKAKKVVERGIEM-SDGMFLSLYYGLV 255 (493)
T ss_dssp HHHHHHHHHHHHHH-CCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHhh
Confidence 78899999999999 9999999875444
No 381
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.79 E-value=3.5 Score=33.75 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhCCC-CccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHh
Q psy13451 85 VDRELKLTKDCLLAQPK-SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDR 152 (522)
Q Consensus 85 ~~~eL~~~~~~l~~~pk-~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~ 152 (522)
..+.+.+++.+++.+|. .-..+++-.---.++ ++|.+++.+++.+|+.+|.|-+|=.-+.-+-++
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ykl---gdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~k 124 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKL---GEYSMAKRYVDTLFEHERNNKQVGALKSMVEDK 124 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHh---hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 46777788888877762 244455555555566 788888888888888888888776555554444
No 382
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.04 E-value=1.5 Score=35.72 Aligned_cols=95 Identities=17% Similarity=0.039 Sum_probs=73.5
Q ss_pred HHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhc-C-CCcchhhHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy13451 92 TKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELD-E-RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIE 169 (522)
Q Consensus 92 ~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d-~-kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~ 169 (522)
+...+..++-+..+=+.=.|.|-+-....+..+.+.+.+.++..+ | ++..+-+|-+...-+++. +.++..+++..++
T Consensus 24 y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~-Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 24 FQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-YEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHH
Confidence 344445567777777777888887622345677999999999987 5 677888888888888888 7999999999999
Q ss_pred hcCCcchHhhHHHHHhch
Q psy13451 170 ANFSNYSAWHYRSKLLPL 187 (522)
Q Consensus 170 ~~~~n~saW~~r~~ll~~ 187 (522)
.+|.|-.|..-+..+-.+
T Consensus 103 ~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 103 TEPQNNQAKELERLIDKA 120 (126)
T ss_dssp HCTTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHH
Confidence 999999987666554443
No 383
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.14 E-value=1.3 Score=36.34 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=65.7
Q ss_pred cchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC-CCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHH
Q psy13451 104 GTWFQRCYVLDHISRAPNYEKELELCNYYLELDE-RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS 182 (522)
Q Consensus 104 ~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~-kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~ 182 (522)
++=..=.|.|.+-....+..+.+.+++.+++.+| +.-.+++|-+.---+++. ++++..+++.+++.+|.|-.|-.-+.
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd-Y~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-YSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 3344446777776233467899999999999988 568899999999999998 79999999999999999998866555
Q ss_pred HHhch
Q psy13451 183 KLLPL 187 (522)
Q Consensus 183 ~ll~~ 187 (522)
.+-.+
T Consensus 120 ~Ie~k 124 (134)
T 3o48_A 120 MVEDK 124 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 384
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=81.62 E-value=3.3 Score=33.64 Aligned_cols=91 Identities=13% Similarity=0.003 Sum_probs=68.9
Q ss_pred HHHHHHhhcCCCcchhhHHHHHHHhcCCC--CHHHHHHHHHHHHhc-C-CcchHhhHHHHHhchhCCCCCCCCccchhHH
Q psy13451 128 LCNYYLELDERNFHCWDYRRYVTDRHKVA--PLKELNYSTEKIEAN-F-SNYSAWHYRSKLLPLLYPDPNNHLPIEQDKY 203 (522)
Q Consensus 128 ~~~~~l~~d~kn~~aW~~R~~~l~~~~~~--~~~el~~~~~~i~~~-~-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~ 203 (522)
-|.+.+..++-+-.+=..-+|++-+.... ..+-+...+..+..+ | .+--+-+|.+....++ +.|
T Consensus 23 ~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl------------g~Y 90 (126)
T 1nzn_A 23 KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL------------KEY 90 (126)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT------------TCH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh------------hhH
Confidence 44555566677777777778888775531 134678888888877 5 5667788888888888 899
Q ss_pred HHHHHHHHHHHhcCCCCcchhhHHHHH
Q psy13451 204 VNEFSMVESAVFTEPKDQSAWFYQRWL 230 (522)
Q Consensus 204 ~~el~~~~~ai~~~p~~~s~W~y~~~l 230 (522)
.++..+++..+.++|+|..|..-+.-+
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999888655443
No 385
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.17 E-value=8.8 Score=31.77 Aligned_cols=87 Identities=11% Similarity=0.042 Sum_probs=66.5
Q ss_pred CCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcC-CCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhh
Q psy13451 101 KSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDE-RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWH 179 (522)
Q Consensus 101 k~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~-kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~ 179 (522)
-+.++=+.=.|+|-+-....+.++.+.+.+.++..+| +.-.+-+|-..-.-+++. +.++..|++.+++.+|.|-.|-.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~-Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE-YSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcCCCcHHHHH
Confidence 3445555567888776334567899999999999888 566677777777778887 79999999999999999998866
Q ss_pred HHHHHhchh
Q psy13451 180 YRSKLLPLL 188 (522)
Q Consensus 180 ~r~~ll~~l 188 (522)
-+..+-.++
T Consensus 116 Lk~~Ie~~i 124 (144)
T 1y8m_A 116 LKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655544444
No 386
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=75.95 E-value=3.2 Score=41.74 Aligned_cols=82 Identities=9% Similarity=-0.076 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHh--------CCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhc--------CCCcchhhHHHH
Q psy13451 85 VDRELKLTKDCLLA--------QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELD--------ERNFHCWDYRRY 148 (522)
Q Consensus 85 ~~~eL~~~~~~l~~--------~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d--------~kn~~aW~~R~~ 148 (522)
+++++.+++++|.+ ||.-..+.+.-+.+.... ++|++++.++.++|++. |.=....+.-+.
T Consensus 314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~---g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM---QDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57777778877773 344456677777777777 99999999999999864 334456777888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHh
Q psy13451 149 VTDRHKVAPLKELNYSTEKIEA 170 (522)
Q Consensus 149 ~l~~~~~~~~~el~~~~~~i~~ 170 (522)
+....++ ++++..++.+++++
T Consensus 391 ~~~~qg~-~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLEN-KAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHhccC-HHHHHHHHHHHHHH
Confidence 8888888 79999999998875
No 387
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=71.40 E-value=6.8 Score=40.02 Aligned_cols=82 Identities=10% Similarity=-0.056 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHh--------CCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCC--------cchhhHHHH
Q psy13451 85 VDRELKLTKDCLLA--------QPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERN--------FHCWDYRRY 148 (522)
Q Consensus 85 ~~~eL~~~~~~l~~--------~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn--------~~aW~~R~~ 148 (522)
+++++.+++++|.+ ||.-..+.+.-+.++... ++|++++.++.++|++..+- ..+.+.-+.
T Consensus 325 ~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~---g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 325 YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL---QAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 67777777777764 444456677777777777 99999999999999865333 345666777
Q ss_pred HHHhcCCCCHHHHHHHHHHHHh
Q psy13451 149 VTDRHKVAPLKELNYSTEKIEA 170 (522)
Q Consensus 149 ~l~~~~~~~~~el~~~~~~i~~ 170 (522)
+....+. ++++..++.+++++
T Consensus 402 ~~~~~G~-~~eA~~~~~~Al~i 422 (490)
T 3n71_A 402 TNWHAGH-IEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHCCC-HHHHHHHHHHHHHH
Confidence 7788887 78999999998875
No 388
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=61.28 E-value=15 Score=36.73 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=68.1
Q ss_pred cchhhHHHHHHHh---cCCCChHHHHHHHHHHHhhcCCCc--------chhhHHHHHHHhcCCCCHHHHHHHHHHHHh--
Q psy13451 104 GTWFQRCYVLDHI---SRAPNYEKELELCNYYLELDERNF--------HCWDYRRYVTDRHKVAPLKELNYSTEKIEA-- 170 (522)
Q Consensus 104 ~~W~~R~~il~~l---~~~~~~~~el~~~~~~l~~d~kn~--------~aW~~R~~~l~~~~~~~~~el~~~~~~i~~-- 170 (522)
..|..-+-++..+ ...+.|++++++|+++|++..+-+ .+.+.-+-+....+. ++++++++.+++++
T Consensus 282 ~~~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-~~eA~~~~~~~L~i~~ 360 (429)
T 3qwp_A 282 QVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-LEEALFYGTRTMEPYR 360 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhHH
Confidence 3454444444332 134689999999999998654433 245555666666777 79999999998864
Q ss_pred ------cCCcchHhhHHHHHhchhCCCCCCCCccchhHHHHHHHHHHHHHhc
Q psy13451 171 ------NFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFT 216 (522)
Q Consensus 171 ------~~~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~el~~~~~ai~~ 216 (522)
||.=-..++..+.+.... ++++++..++.+|+.+
T Consensus 361 ~~lg~~Hp~~a~~l~nLa~~~~~~------------g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 361 IFFPGSHPVRGVQVMKVGKLQLHQ------------GMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHSCSSCHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHHH
Confidence 233334566667766666 7899999999999864
No 389
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.15 E-value=12 Score=28.91 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=32.6
Q ss_pred CCCCCCCC--CCCCCCCCEEEccCCCCCCCChhhhcCCCCccEEEecCC
Q psy13451 461 CSLSSLHV--FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507 (522)
Q Consensus 461 n~l~~~~~--l~~~~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 507 (522)
..++.+.. |.++.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34555554 777888888887654 66666677888888888887653
No 390
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=40.63 E-value=3.7e+02 Score=28.77 Aligned_cols=122 Identities=15% Similarity=0.122 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHHHHHHHHhCCCCcc----chhhHHHHH
Q psy13451 39 EYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATL-AEEELHELVDRELKLTKDCLLAQPKSYG----TWFQRCYVL 113 (522)
Q Consensus 39 ~~~~eal~~~~~~l~~np~~~t~wn~R~~~l~~l~~~~-~~~~~~~~~~~eL~~~~~~l~~~pk~y~----~W~~R~~il 113 (522)
.+-+.|++.++++...+|+... .+....+..+.... ..-+..+.+.++++.....+..-|.... ...+...+|
T Consensus 263 ~~~~~a~~~le~L~~~~p~~~~--~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL 340 (754)
T 4gns_B 263 SLVDFTIDYLKGLTKKDPIHDI--YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLL 340 (754)
T ss_dssp GGHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhCCchhH--HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHH
Confidence 4457788999999999998753 33333333221111 1112334566666655555554333321 122222333
Q ss_pred HH----hcCCCChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHH
Q psy13451 114 DH----ISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNY 163 (522)
Q Consensus 114 ~~----l~~~~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~ 163 (522)
.. +...++++-+|++-.++...-|..|.+|.+-.-+.-.++. ++.+|=.
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d-~e~ALLt 393 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE-YEKALFA 393 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc-HHHHHHH
Confidence 21 1135789999999999999999999999999999999988 6777643
No 391
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.93 E-value=53 Score=25.07 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=21.1
Q ss_pred CcccccC--cCCCCcccEEEecCCCCCCcccccCCCCCCccEEEcCC
Q psy13451 376 QLTSIHH--MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTH 420 (522)
Q Consensus 376 ~l~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 420 (522)
.++.+.. |.++.+|+.+.+..+ ++.....+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 4444433 555555555555443 2223334455555555555543
No 392
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=26.87 E-value=2.8e+02 Score=23.16 Aligned_cols=105 Identities=11% Similarity=0.015 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHhCCCc--------hHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Q psy13451 23 WYHNLMETIFEKRKNQEYD-----DEALSLTSEVLRNIPDI--------NSLWNYRKEVLLHMKATLAEEELHELVDREL 89 (522)
Q Consensus 23 ~y~~~~~~~~~~~~~~~~~-----~eal~~~~~~l~~np~~--------~t~wn~R~~~l~~l~~~~~~~~~~~~~~~eL 89 (522)
.|..+...+.-.-++|+-. ++..+.|++++..-|-. .-+|-.-.. +..++. .+++-
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D----------~d~aR 80 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQE----------PDDAR 80 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHC----------GGGCH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcC----------HHHHH
Confidence 4667777776666667653 67788999998888753 223322222 223322 35566
Q ss_pred HHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHHHhhcCCCcc
Q psy13451 90 KLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFH 141 (522)
Q Consensus 90 ~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~l~~d~kn~~ 141 (522)
+.+..|++.+.+..-+|-..... .+ .++++.++.....+++.+.|+.-+
T Consensus 81 ~vy~~a~~~hKkFAKiwi~~AqF--Ei-Rqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 81 DYFQMARANCKKFAFVHISFAQF--EL-SQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHHHHHHHCTTBHHHHHHHHHH--HH-HTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH--HH-HcccHHHHHHHHHHHhccCCCcHH
Confidence 67777777677775555555443 33 358899999999999998887443
No 393
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=25.77 E-value=2.6e+02 Score=28.19 Aligned_cols=69 Identities=13% Similarity=0.025 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHHhhcCCCcchhhHHHHHHHhcCCCCHHHHHHHHHHHHhcCCcchHhhHHHHHhchhC
Q psy13451 120 PNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLY 189 (522)
Q Consensus 120 ~~~~~el~~~~~~l~~d~kn~~aW~~R~~~l~~~~~~~~~el~~~~~~i~~~~~n~saW~~r~~ll~~l~ 189 (522)
..+..+..+|.+|+.++|.+-+.+++-+.+...-+. .-+++-++.+++-...---.|+.+-..++.+..
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~-~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~~ 234 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-HLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-HHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccc-cHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Confidence 457889999999999999999999999999887665 456777778888776667788888888777654
No 394
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=20.24 E-value=2.5e+02 Score=30.13 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhCCCCccchhhHHHHHHHhcCCCChHHHHHHHHHH
Q psy13451 85 VDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYY 132 (522)
Q Consensus 85 ~~~eL~~~~~~l~~~pk~y~~W~~R~~il~~l~~~~~~~~el~~~~~~ 132 (522)
++-||.+..++...-|..+..|+.-..+.-.+ ++|+.+|-..+.+
T Consensus 353 ~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l---~d~e~ALLtLNSc 397 (754)
T 4gns_B 353 YELALGVSNTSTELALDSFESWYNLARCHIKK---EEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT---TCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHh---ccHHHHHHHHhcC
Confidence 78899999999999999999999999999999 9999999766655
Done!