RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13451
(522 letters)
>gnl|CDD|227823 COG5536, BET4, Protein prenyltransferase, alpha subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 328
Score = 155 bits (394), Expect = 4e-43
Identities = 72/237 (30%), Positives = 114/237 (48%), Gaps = 11/237 (4%)
Query: 10 SVQEAKKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVL 69
+ +R + YH LM KR+ +EY AL LT E++ P+ ++WNYR +L
Sbjct: 17 DLLSELQRILYTESYHPLMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSIL 76
Query: 70 LHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELC 129
H++ ++E L+D EL + L PK+Y W R ++L+ P++ +EL +
Sbjct: 77 KHVQMVSEDKEH--LLDNELDFLDEALKDNPKNYQIWHHRQWMLEL-FPKPSWGRELFIT 133
Query: 130 NYYLELDERNFHCWDYRRYVTDRHKVAPL-----KELNYSTEKIEANFSNYSAWHYRSKL 184
L+ D RN+H W YRR+V + EL Y+T IE + N SAWH+R
Sbjct: 134 KKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIW 193
Query: 185 LPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQII 241
+ + N I Q E + +FT+P +QS W Y R + E + + +I
Sbjct: 194 IERRF---NRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIVMI 247
>gnl|CDD|215423 PLN02789, PLN02789, farnesyltranstransferase.
Length = 320
Score = 63.2 bits (154), Expect = 7e-11
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 30/201 (14%)
Query: 44 ALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSY 103
AL LT++V+R P ++W++R+ L + A L E EL +D PK+Y
Sbjct: 56 ALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEE---------ELDFAEDVAEDNPKNY 106
Query: 104 GTWFQRCYVLDHISRAPNY-EKELELCNYYLELDERNFHCWDYRRYV---TDRHKVAPLK 159
W R ++ + + P+ KELE L LD +N+H W +R++V +
Sbjct: 107 QIWHHRRWLAEKL--GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWE----D 160
Query: 160 ELNYSTEKIEANFSNYSAWHYR---SKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFT 216
EL Y + +E + N SAW+ R PLL +E + +E A+
Sbjct: 161 ELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL-------GGLEAMRD-SELKYTIDAILA 212
Query: 217 EPKDQSAWFYQRWLLGERTSP 237
P+++S W Y R L +
Sbjct: 213 NPRNESPWRYLRGLFKDDKEA 233
Score = 58.6 bits (142), Expect = 2e-09
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 23/148 (15%)
Query: 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPK 101
+E L +V + P +W++R+ + + A ++EL+ T+ L K
Sbjct: 89 EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA--------NKELEFTRKILSLDAK 140
Query: 102 SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPL--- 158
+Y W R +VL + +E ELE C+ LE D RN W+ R +V R +PL
Sbjct: 141 NYHAWSHRQWVLRTLGG---WEDELEYCHQLLEEDVRNNSAWNQRYFVITR---SPLLGG 194
Query: 159 ------KELNYSTEKIEANFSNYSAWHY 180
EL Y+ + I AN N S W Y
Sbjct: 195 LEAMRDSELKYTIDAILANPRNESPWRY 222
Score = 40.5 bits (95), Expect = 0.001
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 123 EKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRS 182
+ L+L + L+ N+ W +RR + +EL+++ + E N NY WH+R
Sbjct: 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR 113
Query: 183 KLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLL 231
L L PD N E + + K+ AW +++W+L
Sbjct: 114 WLAEKLGPDAAN----------KELEFTRKILSLDAKNYHAWSHRQWVL 152
>gnl|CDD|201678 pfam01239, PPTA, Protein prenyltransferase alpha subunit repeat.
Both farnesyltransferase (FT) and
geranylgeranyltransferase 1 (GGT1) recognise a CaaX
motif on their substrates where 'a' stands for
preferably aliphatic residues, whereas GGT2 recognises a
completely different motif. Important substrates for FT
include, amongst others, many members of the Ras
superfamily. GGT1 substrates include some of the other
small GTPases and GGT2 substrates include the Rab
family.
Length = 30
Score = 42.1 bits (100), Expect = 8e-06
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 159 KELNYSTEKIEANFSNYSAWHYRSKLLPLL 188
+EL + + +E + NYSAW+YR LL L
Sbjct: 1 EELELTEKLLELDPKNYSAWNYRRWLLEKL 30
Score = 37.5 bits (88), Expect = 3e-04
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 124 KELELCNYYLELDERNFHCWDYRRYV 149
+ELEL LELD +N+ W+YRR++
Sbjct: 1 EELELTEKLLELDPKNYSAWNYRRWL 26
Score = 34.0 bits (79), Expect = 0.006
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 205 NEFSMVESAVFTEPKDQSAWFYQRWLL 231
E + E + +PK+ SAW Y+RWLL
Sbjct: 1 EELELTEKLLELDPKNYSAWNYRRWLL 27
Score = 33.6 bits (78), Expect = 0.010
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 87 RELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
EL+LT+ L PK+Y W R ++L+ +
Sbjct: 1 EELELTEKLLELDPKNYSAWNYRRWLLEKL 30
Score = 33.2 bits (77), Expect = 0.014
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 43 EALSLTSEVLRNIPDINSLWNYRKEVLLHM 72
E L LT ++L P S WNYR+ +L +
Sbjct: 1 EELELTEKLLELDPKNYSAWNYRRWLLEKL 30
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 39.4 bits (93), Expect = 1e-04
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 454 QSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
+SL L++ L+ + F LP+L+ LD+S N + I F+ + + L+GN
Sbjct: 3 KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
Score = 38.7 bits (91), Expect = 3e-04
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 22/76 (28%)
Query: 414 ESLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VF 469
+SL L++ L+ + F LP+L+ LD+S N +L+S+ F
Sbjct: 3 KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN------------------NLTSISPEAF 44
Query: 470 PHLPSLESLDVSHNAI 485
LPSL SLD+S N +
Sbjct: 45 SGLPSLRSLDLSGNNL 60
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 40.0 bits (94), Expect = 0.002
Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 36/154 (23%)
Query: 373 SSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHL-----TPLVACESLKLTHCSLSS-- 425
S L+ +S+ + L+NN L + LR L A E L L L
Sbjct: 103 SLLRSSSLQELK---------LNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153
Query: 426 ----LHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
L+ L++++N I ++L +LE LD++
Sbjct: 154 CEALAKALRANRDLKELNLANNG---IGDAGIRALA---------EGLKANCNLEVLDLN 201
Query: 482 HNAIDHIEDSVFA---KYEACVQVI-LTGNPVSA 511
+N + S A ++V+ L N ++
Sbjct: 202 NNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 33.6 bits (78), Expect = 0.011
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
++L L++ ++ L +LP+LE+LD+S N I +
Sbjct: 4 ETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLS 39
Score = 30.2 bits (69), Expect = 0.19
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 414 ESLKLTHCSLSSLHVFPHLPSLESLDVSHN 443
E+L L++ ++ L +LP+LE+LD+S N
Sbjct: 4 ETLDLSNNQITDLPPLSNLPNLETLDLSGN 33
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 30.8 bits (71), Expect = 0.085
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 472 LPSLESLDVSHNAIDHIEDSVFA 494
LP+L LD+S+N + + F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 30.8 bits (71), Expect = 0.085
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 472 LPSLESLDVSHNAIDHIEDSVFA 494
LP+L LD+S+N + + F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular
trafficking and secretion].
Length = 526
Score = 32.6 bits (74), Expect = 0.60
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 190 PDPNNHLPIEQDKYVNEFSMVESAVFT---EPKDQSAWFYQRWLLGERTSPVQ-IISAGV 245
++ +P+EQ Y +E + +F+ E + Q+ + +++ L E + P+Q +I AGV
Sbjct: 57 EAESSFIPMEQQFY-SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGV 115
Query: 246 LPSGVTFVTFNQ 257
+P V F+ Q
Sbjct: 116 VPRFVEFMDEIQ 127
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 31.4 bits (71), Expect = 1.1
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 229 WLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFI 288
LLGER S +QI+ + +GV + + +L++ + +
Sbjct: 117 LLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLG-----LLLALAAALLWALYTA 171
Query: 289 WVRFLLSLSCPYRNYISVALLTSITLLQHLHPGS 322
V+ L L P + + LL ++ LL
Sbjct: 172 LVKRLSRLG-PVTLALLLQLLLALLLLLLFFLSG 204
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 31.5 bits (71), Expect = 1.3
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 22/196 (11%)
Query: 325 SNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQT-NPRANQITNLSSLQLTSIHHM 383
SN L L +LD N +++ ++ + N+I +L S +
Sbjct: 107 SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNL- 165
Query: 384 HCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSLHVFPHLPS-LESLDV 440
K +DLS N L++ L +L+ L +L L+ +S L L S LE LD+
Sbjct: 166 ------KNLDLSFNDLSDLPKLLSNLSNL---NNLDLSGNKISDLPPEIELLSALEELDL 216
Query: 441 SHNAPNIILCVYFQSLKLTHCSLSS------LHVFPHLPSLESLDVSHNAIDHIEDSVFA 494
S+N+ +L L+ LS+ +L +LE+LD+S+N I I S
Sbjct: 217 SNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI--SSLG 274
Query: 495 KYEACVQVILTGNPVS 510
++ L+GN +S
Sbjct: 275 SLTNLRELDLSGNSLS 290
>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR
repeats [General function prediction only].
Length = 484
Score = 30.1 bits (68), Expect = 3.4
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 42 DEALSLTSEVLRNIPDINSLWNYRKEVLL-HMKATLAEEELHELVDR 87
DEAL L ++ PD ++LL KA A E L + +
Sbjct: 323 DEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL 369
>gnl|CDD|182175 PRK09971, PRK09971, xanthine dehydrogenase subunit XdhB;
Provisional.
Length = 291
Score = 28.9 bits (65), Expect = 5.8
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 36 KNQEYDDEALSLTSE-VLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRE 88
K + E L E VL+++ +S W KE LH+ L + + E V
Sbjct: 235 KGAPLNLETLEAIGELVLQDVAPRSS-WRASKEFRLHLIQELTKRVIKEAVAAA 287
>gnl|CDD|237114 PRK12488, PRK12488, acetate permease; Provisional.
Length = 549
Score = 29.0 bits (65), Expect = 6.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 235 TSPVQIISAGVLPSGVTFVTF 255
T+ VQII A +L SG +F+ F
Sbjct: 203 TTWVQIIKAVLLLSGTSFMAF 223
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 28.9 bits (65), Expect = 7.2
Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 45/158 (28%)
Query: 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELH-ELVDRELKLTKDCLLAQP 100
E L + D +E LL++ T +L +L D+ ++ D +LA
Sbjct: 126 KELLEFLDKFKVKTED-----EVDREFLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIK 180
Query: 101 K-------------------SYGTWFQRCYVLDHISRAPNYEKELE-----LCNYYLEL- 135
K + T R VLDH +R P+ + ++ CN LE
Sbjct: 181 KDGEDIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYE 240
Query: 136 -------------DERNFHCWDYRRYVTDR-HKVAPLK 159
++R R++V DR K+ LK
Sbjct: 241 KTEVNSGFFYSSAEQREKLVAAERKFVDDRVKKIIELK 278
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 29.2 bits (65), Expect = 7.6
Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 29/165 (17%)
Query: 322 SSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSL----QL 377
+ E++ L + PL +YK E TF + + ++
Sbjct: 286 PDECVEVVRFDMPDLVFVGPLLFVFYKAIEMFEAQCTFRLLTKIYRVFRDRDADKKVCRV 345
Query: 378 TSIHHMHCFAHCKQVDLSNNPLTNNCL---------------RHLTPLVACESLKLTHCS 422
T + C C + NN +CL R L + L
Sbjct: 346 TKLKEGECIKSCPKRICGNN---EDCLFEEAVDCFGAFIPHFRSLLKIKKRMGSSLGIGV 402
Query: 423 LSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH 467
L ++ +P++ +L H +I C +L T + SL
Sbjct: 403 EERLRLYQSVPNVLNLK--HEI-DIGRC----ALTKTEIPIISLS 440
>gnl|CDD|236495 PRK09395, actP, acetate permease; Provisional.
Length = 551
Score = 28.8 bits (65), Expect = 8.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 235 TSPVQIISAGVLPSGVTFVTF 255
T+ VQII A +L SG TF+ F
Sbjct: 205 TTWVQIIKAVLLLSGATFMAF 225
>gnl|CDD|152387 pfam11952, DUF3469, Protein of unknown function (DUF3469). This
family of proteins are functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 108 to 439 amino acids in
length.
Length = 87
Score = 26.9 bits (60), Expect = 8.3
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 50 EVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELV 85
E R + + W R+E + K L+
Sbjct: 2 ESYRGFWESDKHWELRREFIERHKDDYPTGREDRLL 37
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.404
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,693,360
Number of extensions: 2437720
Number of successful extensions: 2090
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2047
Number of HSP's successfully gapped: 46
Length of query: 522
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 421
Effective length of database: 6,457,848
Effective search space: 2718754008
Effective search space used: 2718754008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (26.9 bits)