RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13451
(522 letters)
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 277 bits (708), Expect = 1e-86
Identities = 154/555 (27%), Positives = 237/555 (42%), Gaps = 50/555 (9%)
Query: 1 MHGRKKESVSVQEA----KKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHGR K S ++A +R K+K Y + + +F+KR+ E D+ L LTS++L P
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
D +LWN R+EVL H++ + EE LV EL + CL PKSYGTW RC++L +
Sbjct: 61 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
PN+ +ELELC +LE DERNFHCWDYRR+V + VAP +EL ++ I NFSNYS
Sbjct: 121 P-EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179
Query: 177 AWHYRSKLLPLLYPDPNNHLPIEQDKYV--NEFSMVESAVFTEPKDQSAWFYQRWLLGER 234
+WHYRS LLP L+P P++ + V E +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239
Query: 235 TSPVQIISAGVLPSGVTFVTF-----NQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIW 289
+ V + + + ++ + + W + +G +R
Sbjct: 240 EPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHV 299
Query: 290 VRFLLSLSCPYRNYISVALLTSITLLQHLHPG--SSDSNEIILKRFDLLKTLDPLRLNYY 347
L + T D E + + L L+
Sbjct: 300 WLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVE 359
Query: 348 KDSESKYKIETFIQ----------------TNPRA--------NQITNLSSLQLTSIHHM 383
K + + ++E+ + RA + S+L+
Sbjct: 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 419
Query: 384 HCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHN 443
+ L N + + L L H L+ L L + LD+SHN
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADV------RVLHLAHKDLTVLCHLEQLLLVTHLDLSHN 473
Query: 444 A-----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIED-SVFAKYE 497
P + + L+ + +L ++ +LP L+ L + +N +
Sbjct: 474 RLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCP 533
Query: 498 ACVQVILTGNPVSAD 512
V + L GN + +
Sbjct: 534 RLVLLNLQGNSLCQE 548
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein
prenylation, metal-binding, prenyltransferase, zinc,
phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A*
3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A*
3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A*
Length = 331
Score = 225 bits (575), Expect = 9e-70
Identities = 132/363 (36%), Positives = 186/363 (51%), Gaps = 48/363 (13%)
Query: 1 MHGRKKESVSVQE----AKKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHGR K S ++ +R K+K Y + + +F+KR+ E D+ L LTS++L P
Sbjct: 2 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 61
Query: 57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
D +LWN R+EVL H++ + EE LV EL + CL PKSYGTW RC++L +
Sbjct: 62 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 121
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
PN+ +ELELC +LE DERNFHCWDYRR+V + VAP +EL ++ I NFSNYS
Sbjct: 122 P-EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 180
Query: 177 AWHYRSKLLPLLY--PDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER 234
+WHYRS LLP L+ PD + ++ + E +V++A FT+P DQSAWFY RWLLG
Sbjct: 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG 240
Query: 235 TSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLL 294
+ ++ + +L +L +
Sbjct: 241 SGRCELSVEKSTVLQSELESCKELQELEPEN----------------------------- 271
Query: 295 SLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKY 354
LLT I L++ L P + L+ F LK +DP+R Y D SK+
Sbjct: 272 ----------KWCLLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAAYLDDLRSKF 319
Query: 355 KIE 357
+E
Sbjct: 320 LLE 322
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP 778;
2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A*
3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Length = 349
Score = 175 bits (443), Expect = 3e-50
Identities = 64/342 (18%), Positives = 116/342 (33%), Gaps = 50/342 (14%)
Query: 19 AKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAE 78
+ Y + M+ +E + AL LT ++R P ++W YR +L + +L +
Sbjct: 48 MYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLED 107
Query: 79 EELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDER 138
EL+L + + KSY W R +LD IS + E+E + L D +
Sbjct: 108 ---------ELRLMNEFAVQNLKSYQVWHHRLLLLDRISP-QDPVSEIEYIHGSLLPDPK 157
Query: 139 NFHCWDYRRYVTDRHKVAPLK-------ELNYSTEKIEANFSNYSAWHYRSKLLPLLYPD 191
N+H W Y ++ EL++ E + + N SAW +R L
Sbjct: 158 NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGA 217
Query: 192 PNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQIISAGVLPSGVT 251
+ ++ E + ++ P + SAW Y R L + P+ I +LP +
Sbjct: 218 ETSSRSLQD-----ELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTAS 272
Query: 252 FVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTS 311
+ +F + L + +AL
Sbjct: 273 KL------------------------NPDIETVEAFGFPMPSDPLPEDTPLPVPLALE-- 306
Query: 312 ITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESK 353
L + ++ L D +R Y++ +
Sbjct: 307 --YLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha; geranylgeranyltrasferase, ggtase,
ggtase-I, PGGT, prenyltransferase, farnesyltransferase;
HET: B3P GRG; 1.80A {Candida albicans}
Length = 306
Score = 173 bits (439), Expect = 4e-50
Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 19/226 (8%)
Query: 19 AKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAE 78
+ Y +M + K +EY + AL +T + + ++W YR +L ++
Sbjct: 27 LYDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPN---- 82
Query: 79 EELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN----YEKELELCNYYLE 134
+ EL ++ L K+Y W R ++ I N +E ++ L
Sbjct: 83 ----RNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS 138
Query: 135 LDERNFHCWDYRRYVTDRHKVAPLK-ELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPN 193
D +N H W YR+++ D + EL++ + I+ + N SAW +R LL +
Sbjct: 139 SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLL------FS 192
Query: 194 NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ 239
+ E + V+ + P++ S W Y + +
Sbjct: 193 KKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSIT 238
Score = 50.1 bits (119), Expect = 8e-07
Identities = 24/171 (14%), Positives = 56/171 (32%), Gaps = 13/171 (7%)
Query: 23 WYH--NLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEE 80
W + ++ I E N + +L + P + +W+YRK ++
Sbjct: 106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA-- 163
Query: 81 LHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPN---YEKELELCNYYLELDE 137
+EL + K+ W R ++L ++EL +
Sbjct: 164 ------KELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP 217
Query: 138 RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLL 188
+N W+Y + +R + + +S + ++ ++ L +
Sbjct: 218 QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIY 268
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 162 bits (411), Expect = 3e-45
Identities = 42/211 (19%), Positives = 87/211 (41%), Gaps = 19/211 (9%)
Query: 24 YHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHE 83
+ ++ + + E + A LT + + ++W++R+ +L ++ L E
Sbjct: 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE----- 150
Query: 84 LVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCW 143
E+ + QPK+Y W R +++ + +ELE L D +N+H W
Sbjct: 151 ----EMNYITAIIEEQPKNYQVWHHRRVLVEWLRD---PSQELEFIADILNQDAKNYHAW 203
Query: 144 DYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKY 203
+R++V K+ EL Y + ++ + N S W+ R ++ ++
Sbjct: 204 QHRQWVIQEFKL-WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN------DRAVL 256
Query: 204 VNEFSMVESAVFTEPKDQSAWFYQRWLLGER 234
E + P ++SAW Y + +L +R
Sbjct: 257 EREVQYTLEMIKLVPHNESAWNYLKGILQDR 287
Score = 55.5 bits (133), Expect = 2e-08
Identities = 24/178 (13%), Positives = 63/178 (35%), Gaps = 33/178 (18%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELH------------- 82
Q+ E ++ + ++ P +W++R+ ++ ++ +EL
Sbjct: 143 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNY 200
Query: 83 -------------ELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISR---APNYEKEL 126
+L D EL+ L ++ W QR +V+ + + E+E+
Sbjct: 201 HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV 260
Query: 127 ELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKL 184
+ ++L N W+Y + + ++ L ++ + + S + +
Sbjct: 261 QYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPS--HSSPYLIAFLV 316
Score = 42.8 bits (100), Expect = 2e-04
Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 14/161 (8%)
Query: 77 AEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELD 136
EE E + D ++ ++ I P + + +
Sbjct: 36 KEEMAAEAGEAVASPMDDGFVSLDSPSYVLYRDRAEWADIDPVPQNDGPNPVVQ--IIYS 93
Query: 137 ERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHL 196
++ +DY R V R + + + + + IE N +NY+ WH+R LL L
Sbjct: 94 DKFRDVYDYFRAVLQRDERSE-RAFKLTRDAIELNAANYTVWHFRRVLLKSL-------- 144
Query: 197 PIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSP 237
Q E + + + + +PK+ W ++R L+ P
Sbjct: 145 ---QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 182
Score = 37.4 bits (86), Expect = 0.009
Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 6/127 (4%)
Query: 24 YHNLMETIFE--KRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEEL 81
++ I ++ + + T E+++ +P S WNY K +L + L
Sbjct: 237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLL 296
Query: 82 HELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYL-ELDERNF 140
++L+D + + L+A ++ ++ K LELC E D
Sbjct: 297 NQLLDLQPSHSSPYLIA---FLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRK 353
Query: 141 HCWDYRR 147
W Y
Sbjct: 354 EYWRYIG 360
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 75.6 bits (186), Expect = 1e-14
Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 19/153 (12%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNP----LTNNCLRHLTPLVACESLKLTHCSL 423
L + + SI + F + DL ++ L L + L L C++
Sbjct: 153 WLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL---KYLNLGMCNI 208
Query: 424 SSLHVFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLH--VFPHLPSL 475
+ L LE L++S N I F + L + + +S + F L SL
Sbjct: 209 KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268
Query: 476 ESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
L+++HN + + +F V++ L NP
Sbjct: 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301
Score = 69.4 bits (170), Expect = 8e-13
Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 29/161 (18%)
Query: 371 NLSSLQLTSIHHMHCFAHC---KQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
L + I + F ++L +N LT + +L+ L L L + +
Sbjct: 105 QLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL---RELWLRNNPIE 160
Query: 425 SLH--VFPHLPSLESLDVSHN------APNIILCVYF------QSLKLTHCSLSSLHVFP 470
S+ F +PSL LD+ + F + L L C++ +
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGA-----FEGLFNLKYLNLGMCNIKDMPNLT 215
Query: 471 HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
L LE L++S N I F + ++ + + VS
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256
Score = 59.4 bits (144), Expect = 1e-09
Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 28/123 (22%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSLH 427
NL + + ++ +++++S N L+ L + L + + +S +
Sbjct: 202 NLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL---KKLWVMNSQVSLIE 258
Query: 428 --VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHN 483
F L SL L+++HN +LSSL +F L L L + HN
Sbjct: 259 RNAFDGLASLVELNLAHN------------------NLSSLPHDLFTPLRYLVELHLHHN 300
Query: 484 AID 486
+
Sbjct: 301 PWN 303
Score = 56.3 bits (136), Expect = 1e-08
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 43/136 (31%)
Query: 384 HCFAHCKQVDLSNNPLT----------------NNCLRHLTP-----LVACESLKLTHCS 422
C +V + L+ N ++ + L E L+L S
Sbjct: 51 SCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110
Query: 423 LSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESL 478
+ + F L SL +L++ N L+ + F +L L L
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDN------------------WLTVIPSGAFEYLSKLREL 152
Query: 479 DVSHNAIDHIEDSVFA 494
+ +N I+ I F
Sbjct: 153 WLRNNPIESIPSYAFN 168
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 75.1 bits (185), Expect = 1e-14
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH 427
L L + +I + F + +++S+ P + + + SL +THC+L+++
Sbjct: 182 RLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240
Query: 428 --VFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLH--VFPHLPSLES 477
HL L L++S+N + I Q ++L L+ + F L L
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300
Query: 478 LDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
L+VS N + +E+SVF +IL NP
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETLILDSNP 331
Score = 69.4 bits (170), Expect = 9e-13
Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 20/154 (12%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
L+ ++++ F + + L +N L L+ L L ++ +
Sbjct: 62 ELNENIVSAVEP-GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL---TKLDISENKIV 117
Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSL--HVFPHLPS 474
L +F L +L+SL+V N I F + L L C+L+S+ HL
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177
Query: 475 LESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
L L + H I+ I D F + + ++ P
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Score = 64.7 bits (158), Expect = 3e-11
Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 22/157 (14%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSL 423
N+I L ++++ K +++ +N L L L E L L C+L
Sbjct: 114 NKIVILLDYMFQDLYNL------KSLEVGDNDLVYISHRAFSGLNSL---EQLTLEKCNL 164
Query: 424 SSL--HVFPHLPSLESLDVSHNAPNIILCVYFQSL-KLTHCSLSS---LHVFP----HLP 473
+S+ HL L L + H N I F+ L +L +S L +
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224
Query: 474 SLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
+L SL ++H + + + L+ NP+S
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261
Score = 60.9 bits (148), Expect = 4e-10
Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 19/140 (13%)
Query: 384 HCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESL 438
C A + V L L + +L+ F P LE L
Sbjct: 8 ECSAQDRAVLCHRKRFVAVPEGIPTETR------LLDLGKNRIKTLNQDEFASFPHLEEL 61
Query: 439 DVSHNAPNIILCVYF------QSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIED 490
+++ N + + F ++L L L + VF L +L LD+S N I + D
Sbjct: 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD 121
Query: 491 SVFAKYEACVQVILTGNPVS 510
+F + + N +
Sbjct: 122 YMFQDLYNLKSLEVGDNDLV 141
Score = 56.3 bits (136), Expect = 1e-08
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 32/125 (25%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
+++ LT++ + H ++LS NP++ + L L L + ++L L+
Sbjct: 230 SITHCNLTAVPY-LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL---QEIQLVGGQLA 285
Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDV 480
+ F L L L+VS N L++L VF + +LE+L +
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQ------------------LTTLEESVFHSVGNLETLIL 327
Query: 481 SHNAI 485
N +
Sbjct: 328 DSNPL 332
Score = 33.5 bits (77), Expect = 0.16
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 450 CVYFQSLKLTHCSLSSLHVFP-HLP-SLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
C + C P +P LD+ N I + FA + ++ L N
Sbjct: 7 CECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66
Query: 508 PVS 510
VS
Sbjct: 67 IVS 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 74.4 bits (183), Expect = 2e-14
Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 19/153 (12%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNP----LTNNCLRHLTPLVACESLKLTHCSL 423
L + + SI + F + DL ++ L+ L L L C+L
Sbjct: 142 WLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL---RYLNLAMCNL 197
Query: 424 SSLHVFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLH--VFPHLPSL 475
+ L L+ LD+S N + I F Q L + + + F +L SL
Sbjct: 198 REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257
Query: 476 ESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
++++HN + + +F ++ L NP
Sbjct: 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290
Score = 68.6 bits (168), Expect = 1e-12
Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 29/157 (18%)
Query: 371 NLSSLQLTSIHHMHCFAHC---KQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
LS + +I + F ++L +N LT N +L+ L + L L + +
Sbjct: 94 QLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL---KELWLRNNPIE 149
Query: 425 SLH--VFPHLPSLESLDVSHN------APNIILCVYF------QSLKLTHCSLSSLHVFP 470
S+ F +PSL LD+ + F + L L C+L +
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGA-----FEGLSNLRYLNLAMCNLREIPNLT 204
Query: 471 HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
L L+ LD+S N + I F ++ + +
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Score = 57.5 bits (139), Expect = 6e-09
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 28/123 (22%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH 427
NL+ L I ++ ++DLS N L+ + L L + L + + +
Sbjct: 191 NLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL---QKLWMIQSQIQVIE 247
Query: 428 --VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHN 483
F +L SL ++++HN +L+ L +F L LE + + HN
Sbjct: 248 RNAFDNLQSLVEINLAHN------------------NLTLLPHDLFTPLHHLERIHLHHN 289
Query: 484 AID 486
+
Sbjct: 290 PWN 292
Score = 57.1 bits (138), Expect = 6e-09
Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 19/124 (15%)
Query: 384 HCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESL 438
C +V L + + L L + + F HL LE L
Sbjct: 40 SCSNQFSKVICVRKNLREVPDGISTNTR------LLNLHENQIQIIKVNSFKHLRHLEIL 93
Query: 439 DVSHNAPNIILCVYF------QSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIED 490
+S N I F +L+L L+++ F +L L+ L + +N I+ I
Sbjct: 94 QLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153
Query: 491 SVFA 494
F
Sbjct: 154 YAFN 157
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 70.8 bits (174), Expect = 1e-13
Identities = 35/175 (20%), Positives = 56/175 (32%), Gaps = 37/175 (21%)
Query: 367 NQIT--------NLSSL---------QLTSIHHMHCFAHCKQ---VDLSNNPLTN---NC 403
N + L+ L QL S+ F + + L L
Sbjct: 66 NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGL 124
Query: 404 LRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLK---- 457
R L L + L L +L +L F L +L L + N + + F+ L
Sbjct: 125 FRGLAAL---QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 458 --LTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
L ++ +H F L L +L + N + + A A + L NP
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236
Score = 51.5 bits (124), Expect = 2e-07
Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 32/126 (25%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
L L ++ F + L N +++ R L L + L L ++
Sbjct: 135 YLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL---DRLLLHQNRVA 190
Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDV 480
+H F L L +L + N +LS+L L +L+ L +
Sbjct: 191 HVHPHAFRDLGRLMTLYLFAN------------------NLSALPTEALAPLRALQYLRL 232
Query: 481 SHNAID 486
+ N
Sbjct: 233 NDNPWV 238
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 69.7 bits (171), Expect = 2e-13
Identities = 21/123 (17%), Positives = 51/123 (41%), Gaps = 6/123 (4%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
+ +T+I + + ++L +N +T+ L L L L+L+ L ++
Sbjct: 47 SAFGTGVTTIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPLKNVSAIA 104
Query: 431 HLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
L S+++LD++ + Q L L ++++ L +L+ L + + +
Sbjct: 105 GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS 164
Query: 487 HIE 489
+
Sbjct: 165 DLT 167
Score = 63.6 bits (155), Expect = 3e-11
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
NQIT+L+ L LT I +++LS NPL N + + L + ++L LT ++
Sbjct: 73 NQITDLAPLKNLTKI---------TELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITD 121
Query: 426 LHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
+ L +L+ L + N + Q L + + +S L +L L +L
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181
Query: 482 HNAIDHIED 490
N I I
Sbjct: 182 DNKISDISP 190
Score = 61.6 bits (150), Expect = 1e-10
Identities = 17/128 (13%), Positives = 44/128 (34%), Gaps = 14/128 (10%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
I + A+ ++ + +T+ L +L ++++
Sbjct: 7 TAINVIFPDP--------ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI 56
Query: 427 HVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
+L +L L++ N + L+L+ L ++ L S+++LD++
Sbjct: 57 EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS 116
Query: 483 NAIDHIED 490
I +
Sbjct: 117 TQITDVTP 124
Score = 41.6 bits (98), Expect = 4e-04
Identities = 12/117 (10%), Positives = 34/117 (29%), Gaps = 22/117 (18%)
Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
+ + L + +++ L + +L
Sbjct: 4 TQPTAINV--IFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGT---------- 51
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
++++ +L +L L++ N I + + ++ L+GNP+
Sbjct: 52 --------GVTTIEGVQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLK 98
Score = 29.7 bits (67), Expect = 2.5
Identities = 17/101 (16%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 367 NQITNLSSL--------------QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVA 412
N+I+++S L Q++ + + ++ V L+N +TN + + LV
Sbjct: 183 NKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVV 242
Query: 413 CESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
+K + + + S +++ N + I V +
Sbjct: 243 PNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSY 283
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 70.8 bits (174), Expect = 3e-13
Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 17/141 (12%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSL 423
N+ N +L L I + ++ S N L N L L L LT C +
Sbjct: 14 NKTYNCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINL---TFLDLTRCQI 69
Query: 424 SSLH--VFPHLPSLESLDVSHN-----APNIIL-CVYFQSLKLTHCSLSSL--HVFPHLP 473
+H F L++L ++ N A + + L +SS+ +
Sbjct: 70 YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129
Query: 474 SLESLDVSHNAIDHIEDSVFA 494
+LESL + N I I+
Sbjct: 130 TLESLYLGSNHISSIKLPKGF 150
Score = 65.4 bits (160), Expect = 2e-11
Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 22/141 (15%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSL 423
N + + + + + ++ +DL+ + + + L ++L LT L
Sbjct: 43 NVLPTIQNTTFSRLINL------TFLDLTRCQIYWIHEDTFQSQHRL---DTLVLTANPL 93
Query: 424 SSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLK------LTHCSLSSL--HVFPHLP 473
+ +L+ L + I + + K L +SS+
Sbjct: 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153
Query: 474 SLESLDVSHNAIDHIEDSVFA 494
L+ LD +NAI ++ +
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMS 174
Score = 65.4 bits (160), Expect = 2e-11
Identities = 45/222 (20%), Positives = 76/222 (34%), Gaps = 51/222 (22%)
Query: 294 LSLSCPYRNYISV---ALLTSITLLQHLH----PGSSDSNEIILKRFDLLKTLDPLRLNY 346
L LS N ++ L HL + L+ + L+ LD L +
Sbjct: 306 LVLS---ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD-LSHD- 360
Query: 347 YKDSESKYKIETFIQTNPRANQITNLSSL-----QLTSIHHMHCFAHCKQ---VDLSNNP 398
IET N + +++L SL + S+ F C Q +DL+
Sbjct: 361 --------DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT-EAFKECPQLELLDLAFTR 411
Query: 399 LTN----NCLRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPNIILCVY 452
L + ++L L + L L+H L +F LP+L+ L++ N
Sbjct: 412 LKVKDAQSPFQNLHLL---KVLNLSHSLLDISSEQLFDGLPALQHLNLQGN--------- 459
Query: 453 FQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFA 494
++ + L LE L +S + I+ F
Sbjct: 460 ----HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497
Score = 62.0 bits (151), Expect = 2e-10
Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 16/131 (12%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTNNCLRHLTPLVACESLK---LTHCSLS 424
NLS L F + +L N ++ L L+ L+ C LS
Sbjct: 431 NLSHSLLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489
Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSS-------LHVFPHLPSL 475
S+ F L + +D+SHN LK + +L+S + P L
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQ 549
Query: 476 ESLDVSHNAID 486
++++ N +D
Sbjct: 550 RTINLRQNPLD 560
Score = 61.2 bits (149), Expect = 4e-10
Identities = 23/137 (16%), Positives = 37/137 (27%), Gaps = 19/137 (13%)
Query: 384 HCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESL 438
K + N L L+ + L ++ F L +L L
Sbjct: 9 IEKEVNKTYNCENLGLNEIPGTLPNSTE------CLEFSFNVLPTIQNTTFSRLINLTFL 62
Query: 439 DVSHNAPNIILCVYFQSLK------LTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIED 490
D++ I FQS LT L + +L+ L I I+
Sbjct: 63 DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122
Query: 491 SVFAKYEACVQVILTGN 507
+ + L N
Sbjct: 123 IPLHNQKTLESLYLGSN 139
Score = 60.4 bits (147), Expect = 7e-10
Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 24/145 (16%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNN----PLTNNCLRHLTPLVACESLKLTHCSL 423
LS+ + ++ ++ + + N L CL +L L L L+H +
Sbjct: 307 VLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLENL---RELDLSHDDI 362
Query: 424 SSLHV----FPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLH---VFP 470
+ +L L+SL++S+N P + F + L L L F
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422
Query: 471 HLPSLESLDVSHNAIDHIEDSVFAK 495
+L L+ L++SH+ +D + +F
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDG 447
Score = 48.1 bits (115), Expect = 5e-06
Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 19/155 (12%)
Query: 371 NLSSLQLTSIHHMHCFAHC---KQVDLSNNPLTNNCLRHLTPLVACE--SLKLTHCSLSS 425
L S ++SI + K +D NN + ++ L SL L ++
Sbjct: 135 YLGSNHISSIK-LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193
Query: 426 LHVFP-HLPSLESLDVSHNAPNIILCVYF--------QSLKLTHCSLSSL--HVFPHLP- 473
+ +SL+ +++ + VF L
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253
Query: 474 -SLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
S+ES+++ + +I + F + ++ LT
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 70.9 bits (173), Expect = 4e-13
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
++ + S+ + + ++ L+ N LT+ ++ LT L L L + L
Sbjct: 49 IANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKDLSSLK 106
Query: 431 HLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
L L+SL + HN ++ +SL L + ++ + V L L++L + N I
Sbjct: 107 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS 166
Query: 487 HIED 490
I
Sbjct: 167 DIVP 170
Score = 62.0 bits (150), Expect = 2e-10
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 16/132 (12%)
Query: 367 NQITNLSSLQ-LTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
N+I +LSSL+ L + K + L +N +++ + L L ESL L + ++
Sbjct: 97 NKIKDLSSLKDLKKL---------KSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD 145
Query: 426 LHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
+ V L L++L + N + Q+L L+ +S L L +L+ L++
Sbjct: 146 ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 205
Query: 482 HNAIDHIEDSVF 493
+ +
Sbjct: 206 SQECLNKPINHQ 217
Score = 48.6 bits (115), Expect = 4e-06
Identities = 13/121 (10%), Positives = 37/121 (30%), Gaps = 22/121 (18%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL 449
+ + P+ + L S++ L S++ + +++
Sbjct: 2 GETITVSTPIKQ--IFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNS------ 53
Query: 450 CVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPV 509
+ S+ +LP++ L ++ N + I+ + + L N +
Sbjct: 54 ------------DIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99
Query: 510 S 510
Sbjct: 100 K 100
Score = 47.0 bits (111), Expect = 1e-05
Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 20/139 (14%)
Query: 367 NQITNLSSLQ-LTSIHHMHCFAHCKQVDLSNNPLTN-NCLRHLTPLVACESLKLTHCSLS 424
N+IT+++ L LT + + L +N +++ L LT L ++L L+ +S
Sbjct: 141 NKITDITVLSRLTKL---------DTLSLEDNQISDIVPLAGLTKL---QNLYLSKNHIS 188
Query: 425 SLHVFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLHVFPHLPSLESL 478
L L +L+ L++ + ++K T SL + + E
Sbjct: 189 DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP 248
Query: 479 DVSHNAIDHIEDSVFAKYE 497
+V + + + F Y+
Sbjct: 249 NVKWHLPEFTNEVSFIFYQ 267
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 69.3 bits (170), Expect = 7e-13
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH 427
++S+ L I F + LS+N LT+ L + L +++ LS+L
Sbjct: 147 SMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSL---FHANVSYNLLSTL- 201
Query: 428 VFPHLPSLESLDVSHNAPNII---LCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484
++E LD SHN+ N++ + V LKL H +L+ + P L +D+S+N
Sbjct: 202 --AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 259
Query: 485 IDHIEDSVFAK 495
++ I F K
Sbjct: 260 LEKIMYHPFVK 270
Score = 65.8 bits (161), Expect = 9e-12
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 19/133 (14%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH 427
N+S L+++ +++D S+N + LT LKL H +L+
Sbjct: 192 NVSYNLLSTLAIP---IAVEELDASHNSINVVRGPVNVELT------ILKLQHNNLTDTA 242
Query: 428 VFPHLPSLESLDVSHNAPNIILCVYFQSLK------LTHCSLSSLH-VFPHLPSLESLDV 480
+ P L +D+S+N I+ F ++ +++ L +L+ +P+L+ LD+
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 302
Query: 481 SHNAIDHIEDSVF 493
SHN + H+E +
Sbjct: 303 SHNHLLHVERNQP 315
Score = 61.2 bits (149), Expect = 2e-10
Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 14/150 (9%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL--HV 428
+ S + + + L +N LT+ L + L++ L + H
Sbjct: 211 DASHNSINVVRG-PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 267
Query: 429 FPHLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSH 482
F + LE L +S+N + L L+H L + P LE+L + H
Sbjct: 268 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH 327
Query: 483 NAIDHIEDSVFAKYEACVQVILTGNPVSAD 512
N+I ++ S + + L+ N +
Sbjct: 328 NSIVTLKLSTHHTLK---NLTLSHNDWDCN 354
Score = 58.9 bits (143), Expect = 1e-09
Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 29/148 (19%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSL 423
I + + + K V N+ + L + E L L +
Sbjct: 26 VHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAALLDSFRQV---ELLNLNDLQI 81
Query: 424 SSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSL--HVFPHLPSLESLD 479
+ F + +++ L + N ++ L HVF ++P L L
Sbjct: 82 EEIDTYAFAYAHTIQKLYMGFN------------------AIRYLPPHVFQNVPLLTVLV 123
Query: 480 VSHNAIDHIEDSVFAKYEACVQVILTGN 507
+ N + + +F + ++ N
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNN 151
Score = 30.0 bits (68), Expect = 1.9
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHL 407
L + ++ + K + LS+N N LR L
Sbjct: 324 YLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNSLRAL 359
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 69.3 bits (170), Expect = 1e-12
Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 14/191 (7%)
Query: 309 LTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQ 368
L L+ + + L + ++ I F
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF--HCLANVS 288
Query: 369 ITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHV 428
+L+ + + + + + + + L L L +SL LT S
Sbjct: 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL---KSLTLTMNKGSISFK 345
Query: 429 FPHLPSLESLDVSHNAPNIILCVYF--------QSLKLTHCSLSSL-HVFPHLPSLESLD 479
LPSL LD+S NA + C + + L L+ + F L L+ LD
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405
Query: 480 VSHNAIDHIED 490
H+ + + +
Sbjct: 406 FQHSTLKRVTE 416
Score = 68.5 bits (168), Expect = 2e-12
Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 14/152 (9%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL- 426
+ L + F ++ +D+S + L + +LK+ S
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464
Query: 427 --HVFPHLPSLESLDVSHNA-----PNII-LCVYFQSLKLTHCSLSSLH--VFPHLPSLE 476
+VF + +L LD+S + Q L ++H +L L + L SL
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524
Query: 477 SLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
+LD S N I+ + + ++ LT N
Sbjct: 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556
Score = 67.4 bits (165), Expect = 5e-12
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 17/136 (12%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH 427
+L+ + + K +DLS NPL + + + L + L L+ C + ++
Sbjct: 17 QCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSEL---QWLDLSRCEIETIE 72
Query: 428 --VFPHLPSLESLDVSHN-----APNIIL-CVYFQSLKLTHCSLSSL--HVFPHLPSLES 477
+ L L +L ++ N +P ++L L+SL L +L+
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132
Query: 478 LDVSHNAIDHIEDSVF 493
L+V+HN I + +
Sbjct: 133 LNVAHNFIHSCKLPAY 148
Score = 65.1 bits (159), Expect = 2e-11
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 27/132 (20%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
+LS ++ +I + + L+ NP+ + LT L E+L L+
Sbjct: 62 DLSRCEIETIED-KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL---ENLVAVETKLA 117
Query: 425 SL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
SL L +L+ L+V+HN + C L + F +L +L +D+S+
Sbjct: 118 SLESFPIGQLITLKKLNVAHN-------------FIHSCKLPA--YFSNLTNLVHVDLSY 162
Query: 483 NAIDHIEDSVFA 494
N I I +
Sbjct: 163 NYIQTITVNDLQ 174
Score = 64.3 bits (157), Expect = 5e-11
Identities = 34/200 (17%), Positives = 62/200 (31%), Gaps = 17/200 (8%)
Query: 308 LLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRAN 367
L + + L + + I + F +K + L L +S + I N
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE-LTLRGNFNSSN---IMKTCLQNLAGL 231
Query: 368 QITNLSSLQLTSIHHMHCFA----------HCKQVDLSNNPLTNNCLRHLTPLVACESLK 417
+ L + ++ F + L+ ++ + L ++
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291
Query: 418 LTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLK---LTHCSLSSLHVFPHLPS 474
L S+ L P +SL + + LK LT S LPS
Sbjct: 292 LAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPS 351
Query: 475 LESLDVSHNAIDHIEDSVFA 494
L LD+S NA+ ++
Sbjct: 352 LSYLDLSRNALSFSGCCSYS 371
Score = 56.2 bits (136), Expect = 2e-08
Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 21/133 (15%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTN----NCLRHLTPLVACESLKLTHCSL 423
++S F + ++ N + N + T L L L+ C L
Sbjct: 430 DISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL---TFLDLSKCQL 485
Query: 424 SSL--HVFPHLPSLESLDVSHN-----APNIIL-CVYFQSLKLTHCSLSSL--HVFPHLP 473
+ VF L L+ L++SHN + +L + + + +
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545
Query: 474 SLESLDVSHNAID 486
SL ++++N++
Sbjct: 546 SLAFFNLTNNSVA 558
Score = 48.5 bits (116), Expect = 4e-06
Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 12/165 (7%)
Query: 333 FDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCK-- 390
F L L + L+Y F++ NP+ N ++S + I F K
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD-QAFQGIKLH 207
Query: 391 QVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILC 450
++ L N ++N ++ ++L H L F +LE + S +
Sbjct: 208 ELTLRGNFNSSNIMKT-----CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV- 261
Query: 451 VYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVF 493
+LT+ + S F L ++ ++ ++ +I ++ED
Sbjct: 262 -TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK 305
Score = 41.9 bits (99), Expect = 4e-04
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 29/98 (29%)
Query: 401 NNCLRHLTPLVA-CESLKLTHCSLSSLHVFPHLP-SLESLDVSHNAPNIILCVYFQSLKL 458
N C+ + + C KL+ V +P S +++D+S N
Sbjct: 5 NPCIEVVPNITYQCMDQKLSK-------VPDDIPSSTKNIDLSFN--------------- 42
Query: 459 THCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFA 494
L L + F + L+ LD+S I+ IED +
Sbjct: 43 ---PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77
Score = 29.2 bits (66), Expect = 4.0
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 460 HCSLSSLHVFPH--LPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
C L P S +++D+S N + ++ F+ + + L+
Sbjct: 17 QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 67.7 bits (166), Expect = 1e-12
Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 19/143 (13%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSL 423
+S LTS+ + +++L +N L + LT L L L+ L
Sbjct: 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQL---TKLSLSSNGL 64
Query: 424 SSLHV----FPHLPSLESLDVSHNAPNIILCVYF-----QSLKLTHCSLSSLH---VFPH 471
S SL+ LD+S N + + + L H +L + VF
Sbjct: 65 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124
Query: 472 LPSLESLDVSHNAIDHIEDSVFA 494
L +L LD+SH + +F
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFN 147
Score = 66.2 bits (162), Expect = 4e-12
Identities = 34/156 (21%), Positives = 56/156 (35%), Gaps = 21/156 (13%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
+ L + F + +D+S+ N L+ L E LK+ S
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL---EVLKMAGNSFQ 163
Query: 425 SL---HVFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLH--VFPHLP 473
+F L +L LD+S + F Q L ++H + SL + L
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223
Query: 474 SLESLDVSHNAIDHIEDSVFAKYEACVQVI-LTGNP 508
SL+ LD S N I + + + + + LT N
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259
Score = 62.3 bits (152), Expect = 6e-11
Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 29/145 (20%)
Query: 367 NQITNLSS--LQLTSIHHMHCFAHCKQVDLSNNPLTN----NCLRHLTPLVACESLKLTH 420
N + +SS L L + H+ D ++ L + L L L ++H
Sbjct: 88 NGVITMSSNFLGLEQLEHL---------DFQHSNLKQMSEFSVFLSLRNL---IYLDISH 135
Query: 421 CSLSSL--HVFPHLPSLESLDVSHNAPNIIL-------CVYFQSLKLTHCSLSSLH--VF 469
+F L SLE L ++ N+ L L+ C L L F
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195
Query: 470 PHLPSLESLDVSHNAIDHIEDSVFA 494
L SL+ L++SHN ++ +
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYK 220
Score = 61.2 bits (149), Expect = 2e-10
Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 43/165 (26%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---------------------NNCLR 405
N++ +L + + ++ LS+N L+ N +
Sbjct: 38 NKLQSLPHGVFDKLTQL------TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 406 HLTP----LVACESLKLTHCSLSSLH---VFPHLPSLESLDVSHNAPNIILCVYF----- 453
++ L E L H +L + VF L +L LD+SH + F
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 454 -QSLKLTHCSLSSL---HVFPHLPSLESLDVSHNAIDHIEDSVFA 494
+ LK+ S +F L +L LD+S ++ + + F
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196
Score = 53.1 bits (128), Expect = 8e-08
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 22/134 (16%)
Query: 371 NLSSLQLTSIHHMHCFAHC---KQVDLSNNP----LTNNCLRHLTPLVACESLKLTHCSL 423
++S + F + + ++ N + L L L L+ C L
Sbjct: 132 DISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL---TFLDLSQCQL 187
Query: 424 SSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLK------LTHCSLSSLH--VFPHLP 473
L F L SL+ L++SHN + ++ L + + + H P
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247
Query: 474 -SLESLDVSHNAID 486
SL L+++ N
Sbjct: 248 SSLAFLNLTQNDFA 261
Score = 30.8 bits (70), Expect = 0.95
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 461 CSLSSLHVFPH--LPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
C+ L P S L++ N + + VF K ++ L+ N +S
Sbjct: 14 CNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 68.0 bits (167), Expect = 1e-12
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTN-NCLRHLTPLVACESLKLTHCSLS 424
NQI ++S L LTS+H+ N +T+ + ++T L SLK+ + ++
Sbjct: 187 NQIEDISPLASLTSLHYF---------TAYVNQITDITPVANMTRL---NSLKIGNNKIT 234
Query: 425 SLHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDV 480
L +L L L++ N + + L + +S + V +L L SL +
Sbjct: 235 DLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFL 294
Query: 481 SHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
++N + + + V + L+ N ++
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324
Score = 62.2 bits (152), Expect = 1e-10
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
+ I A + L +T+ + L + L + ++S+
Sbjct: 6 ATLPAPINQIFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASIQGIE 63
Query: 431 HLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
+L +LE L+++ N + V +L + ++ + +L +L L ++ + I
Sbjct: 64 YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNIS 123
Query: 487 HIE 489
I
Sbjct: 124 DIS 126
Score = 59.9 bits (146), Expect = 5e-10
Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 7/124 (5%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
NL+ Q+T I + + + N +T+ + L L L L ++S +
Sbjct: 72 NLNGNQITDISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISPLA 129
Query: 431 HLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI 485
+L + SL++ N + L +T + + +L L SL +++N I
Sbjct: 130 NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQI 189
Query: 486 DHIE 489
+ I
Sbjct: 190 EDIS 193
Score = 58.7 bits (143), Expect = 1e-09
Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 18/126 (14%)
Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
N+IT+LS L L+ + +++ N +++ + + L + L + +S
Sbjct: 231 NKITDLSPLANLSQL---------TWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD 279
Query: 426 LHVFPHLPSLESLDVSHN------APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLD 479
+ V +L L SL +++N I +L L+ ++ + L ++S D
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSAD 339
Query: 480 VSHNAI 485
++ I
Sbjct: 340 FANQVI 345
Score = 57.6 bits (140), Expect = 3e-09
Identities = 29/164 (17%), Positives = 55/164 (33%), Gaps = 39/164 (23%)
Query: 365 RANQITNLSSL-QLTS----------IHHMHCFAHCKQV---DLSNNPLT---------- 400
N+IT++S+L LT+ I + A+ ++ +L N
Sbjct: 96 GTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMT 155
Query: 401 --------NNCLRHLTPLVACESLK---LTHCSLSSLHVFPHLPSLESLDVSHNA----P 445
+ ++ +TP+ L L + + + L SL N
Sbjct: 156 GLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT 215
Query: 446 NIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
+ SLK+ + ++ L +L L L++ N I I
Sbjct: 216 PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN 259
Score = 57.6 bits (140), Expect = 3e-09
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 6/104 (5%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNA----P 445
+ P+ + L L S++ + L S+ L V+
Sbjct: 3 ATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ 60
Query: 446 NIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
I + L L ++ + +L L +L + N I I
Sbjct: 61 GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS 104
Score = 35.2 bits (82), Expect = 0.049
Identities = 8/76 (10%), Positives = 20/76 (26%), Gaps = 18/76 (23%)
Query: 415 SLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPS 474
+L ++ + L + S++ + L S
Sbjct: 4 TLATLPAPINQIFPDADLAEGIRAVLQKA------------------SVTDVVTQEELES 45
Query: 475 LESLDVSHNAIDHIED 490
+ L V+ + I+
Sbjct: 46 ITKLVVAGEKVASIQG 61
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 68.4 bits (167), Expect = 2e-12
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH 427
++S+ L I F + LS+N LT+ L + L +++ LS+L
Sbjct: 153 SMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSL---FHANVSYNLLSTL- 207
Query: 428 VFPHLPSLESLDVSHNAPNII---LCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484
++E LD SHN+ N++ + V LKL H +L+ + P L +D+S+N
Sbjct: 208 --AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE 265
Query: 485 IDHIEDSVFAK 495
++ I F K
Sbjct: 266 LEKIMYHPFVK 276
Score = 64.9 bits (158), Expect = 3e-11
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 19/133 (14%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH 427
N+S L+++ +++D S+N + LT LKL H +L+
Sbjct: 198 NVSYNLLSTLAIP---IAVEELDASHNSINVVRGPVNVELT------ILKLQHNNLTDTA 248
Query: 428 VFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLH-VFPHLPSLESLDV 480
+ P L +D+S+N I+ F + L +++ L +L+ +P+L+ LD+
Sbjct: 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 308
Query: 481 SHNAIDHIEDSVF 493
SHN + H+E +
Sbjct: 309 SHNHLLHVERNQP 321
Score = 60.3 bits (146), Expect = 8e-10
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 11/131 (8%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--V 428
+ S + + + L +N LT+ L + L++ L +
Sbjct: 217 DASHNSINVVRG-PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273
Query: 429 FPHLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCSLSSLHV-FPHLPSLESLDVSH 482
F + LE L +S+N + L L+H L + P LE+L + H
Sbjct: 274 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH 333
Query: 483 NAIDHIEDSVF 493
N+I ++ S
Sbjct: 334 NSIVTLKLSTH 344
Score = 58.0 bits (140), Expect = 4e-09
Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 394 LSNNPLTNNCLRHLT-----PLVACESLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPN 446
+ + L + + + ++ L + +E L+++
Sbjct: 29 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88
Query: 447 IILCVYF------QSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEA 498
I F Q L + ++ L HVF ++P L L + N + + +F
Sbjct: 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148
Query: 499 CVQVILTGN 507
+ ++ N
Sbjct: 149 LTTLSMSNN 157
Score = 35.7 bits (82), Expect = 0.044
Identities = 20/143 (13%), Positives = 44/143 (30%), Gaps = 7/143 (4%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
L + ++ + K + LS+N N LR L VA + +
Sbjct: 330 YLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNSLRALFRNVA--RPAVDDADQHCKIDYQ 386
Query: 431 HLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIED 490
L + + +L Q + LT + ++++ + +I
Sbjct: 387 LEHGLCCKESDKPYLDRLL----QYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQ 442
Query: 491 SVFAKYEACVQVILTGNPVSADM 513
+ Q+ N + A++
Sbjct: 443 QGGVPLQGNEQLEAEVNELRAEV 465
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 68.1 bits (167), Expect = 3e-12
Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 17/141 (12%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSL 423
+++ + S L+LT + + ++L++N L + L SL + ++
Sbjct: 6 HEVADCSHLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQL---TSLDVGFNTI 61
Query: 424 SSLH--VFPHLPSLESLDVSHN-----APNII-LCVYFQSLKLTHCSLSSLH--VFPHLP 473
S L + LP L+ L++ HN + C L L S+ + F
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 474 SLESLDVSHNAIDHIEDSVFA 494
+L +LD+SHN + +
Sbjct: 122 NLITLDLSHNGLSSTKLGTQV 142
Score = 67.3 bits (165), Expect = 5e-12
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 38/170 (22%)
Query: 360 IQTNPRANQITNLSSLQ--------LTSIHHMHCFAHCKQ---VDLSNNPLTN-----NC 403
I + L ++ + + FA + L L N +
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTR-NSFALVPSLQRLMLRRVALKNVDSSPSP 475
Query: 404 LRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESLDVSHN--------------APNI 447
+ L L L L++ +++++ + L LE LD+ HN +
Sbjct: 476 FQPLRNL---TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532
Query: 448 ILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
+ L L + VF L L+ +D+ N ++ + SVF
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582
Score = 63.9 bits (156), Expect = 7e-11
Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 19/123 (15%)
Query: 385 CFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLD 439
C + D S+ LT ++ ++T L LTH L L F L SLD
Sbjct: 2 CTVSHEVADCSHLKLTQVPDDLPTNIT------VLNLTHNQLRRLPAANFTRYSQLTSLD 55
Query: 440 VSHNA-----PNIIL-CVYFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDS 491
V N P + + L L H LS L F +L L + N+I I+++
Sbjct: 56 VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115
Query: 492 VFA 494
F
Sbjct: 116 PFV 118
Score = 63.5 bits (155), Expect = 8e-11
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 23/161 (14%)
Query: 371 NLSSLQLTSIHHM-HCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
L + L ++ F + +DLSNN + N L L E L L H +L+ L
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519
Query: 427 H----------VFPHLPSLESLDVSHNA-----PNIIL-CVYFQSLKLTHCSLSSLH--V 468
L L L++ N + + + L +L++L V
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579
Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVI-LTGNP 508
F + SL+SL++ N I +E VF + + + NP
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620
Score = 61.9 bits (151), Expect = 3e-10
Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 18/159 (11%)
Query: 367 NQITNLSSL---QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSL 423
N I +L S L ++ +++ + +S L L E L + +
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341
Query: 424 SSL--HVFPHLPSLESLDVSHNAPNIILCVYF----------QSLKLTHCSLSSLH--VF 469
+ ++F L +L+ L +S++ ++ L LT +S + F
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401
Query: 470 PHLPSLESLDVSHNAI-DHIEDSVFAKYEACVQVILTGN 507
L LE LD+ N I + + E ++ L+ N
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440
Score = 61.6 bits (150), Expect = 3e-10
Identities = 41/207 (19%), Positives = 71/207 (34%), Gaps = 34/207 (16%)
Query: 315 LQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQIT--NL 372
++ PG F + L L LN + S + + I +L
Sbjct: 183 IKEFSPGC----------FHAIGRLFGLFLNNVQLGPS---LTEKLCLELANTSIRNLSL 229
Query: 373 SSLQLTSIHHMHCFAHCKQV-----DLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL- 426
S+ QL++ + F K DLS N L L E L + ++ L
Sbjct: 230 SNSQLSTTSN-TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288
Query: 427 -HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHN 483
H L ++ L++ + F ++ SL + F L LE L++ N
Sbjct: 289 SHSLHGLFNVRYLNLKRS---------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339
Query: 484 AIDHIEDSVFAKYEACVQVILTGNPVS 510
I I+ ++F + L+ + S
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTS 366
Score = 60.4 bits (147), Expect = 8e-10
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 20/140 (14%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
NL+ QL + F Q+ D+ N ++ + L L + L L H LS
Sbjct: 31 NLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPML---KVLNLQHNELS 86
Query: 425 SL--HVFPHLPSLESLDVSHNA----PNIILC--VYFQSLKLTHCSLSSL--HVFPHLPS 474
L F +L L + N+ N +L L+H LSS L +
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 475 LESLDVSHNAIDHIEDSVFA 494
L+ L +S+N I ++
Sbjct: 147 LQELLLSNNKIQALKSEELD 166
Score = 58.5 bits (142), Expect = 3e-09
Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 22/143 (15%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
++ ++ + ++L +N L+ T L L L S+
Sbjct: 55 DVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL---TELHLMSNSIQ 110
Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLK------LTHCSLSSLH----VFPHL 472
+ F +L +LD+SHN + L+ L++ + +L
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170
Query: 473 PSLESLDVSHNAIDHIEDSVFAK 495
SL+ L++S N I F
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHA 193
Score = 51.9 bits (125), Expect = 3e-07
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 25/139 (17%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT--------NNCLRHLTPLVACESLKL 418
N I N++ L + + + +DL +N L + L L L L
Sbjct: 490 NNIANINDDMLEGLEKL------EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543
Query: 419 THCSLSSLH--VFPHLPSLESLDVSHNA-----PNIIL-CVYFQSLKLTHCSLSSL---H 467
+ VF L L+ +D+ N ++ V +SL L ++S+
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603
Query: 468 VFPHLPSLESLDVSHNAID 486
P +L LD+ N D
Sbjct: 604 FGPAFRNLTELDMRFNPFD 622
Score = 30.7 bits (70), Expect = 1.4
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 455 SLKLTHCSLSSLHVFPH--LPSLESLDVSHNAIDHIEDSVFAKY 496
S ++ CS L P ++ L+++HN + + + F +Y
Sbjct: 5 SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRY 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 67.4 bits (165), Expect = 5e-12
Identities = 39/234 (16%), Positives = 66/234 (28%), Gaps = 32/234 (13%)
Query: 293 LLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSES 352
SL+ +A L L+ + + + L L
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 353 KYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNP-------------- 398
I +L S+ + + + ++L N
Sbjct: 271 LDDIIDLFN-CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329
Query: 399 --LTNNCLRHLTPLVACESLK---LTHCSLSSL----HVFPHLPSLESLDVSHNA----- 444
T+N + V SL+ L+ LS SL+ LD+S N
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389
Query: 445 PNIILCVYFQSLKLTHCSLSSL---HVFPHLPSLESLDVSHNAIDHIEDSVFAK 495
N + + L H +L + VF L +L LD+SH + +F
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Score = 65.5 bits (160), Expect = 2e-11
Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 23/156 (14%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTN----NCLRHLTPLVACESLKLTHCSL 423
+LS + ++ F +Q +D ++ L + L L L ++H
Sbjct: 379 DLSFNGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL---IYLDISHTHT 433
Query: 424 SSL--HVFPHLPSLESLDVSHNA-PNIILCVYF------QSLKLTHCSLSSLH--VFPHL 472
+F L SLE L ++ N+ L F L L+ C L L F L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 473 PSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
SL+ L+++ N + + D +F + + ++ L NP
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529
Score = 64.7 bits (158), Expect = 3e-11
Identities = 51/268 (19%), Positives = 83/268 (30%), Gaps = 42/268 (15%)
Query: 251 TFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLT 310
+ L L + + + L L+ F + + S S V +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYL--DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301
Query: 311 SITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQIT 370
QHL + + LK+L L K +
Sbjct: 302 YNFGWQHLE---LVNCKFGQFPTLKLKSLKRLTFTSNK-----------GGNAFSEVDLP 347
Query: 371 NLSSLQLT--SIHHMHCFAHC-------KQVDLSNNPLTN--NCLRHLTPLVACESLKLT 419
+L L L+ + C + K +DLS N + + L L E L
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL---EHLDFQ 404
Query: 420 HCSLSSL---HVFPHLPSLESLDVSHNA----PNIILCVYF--QSLKLTHCSLSSL---H 467
H +L + VF L +L LD+SH N I + LK+ S
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 468 VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
+F L +L LD+S ++ + + F
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Score = 63.6 bits (155), Expect = 7e-11
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 27/132 (20%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
+LS ++ +I + + L+ NP+ + L+ L + L +L+
Sbjct: 58 DLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL---QKLVAVETNLA 113
Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
SL HL +L+ L+V+HN + S F +L +LE LD+S
Sbjct: 114 SLENFPIGHLKTLKELNVAHN-------------LIQ--SFKLPEYFSNLTNLEHLDLSS 158
Query: 483 NAIDHIEDSVFA 494
N I I +
Sbjct: 159 NKIQSIYCTDLR 170
Score = 59.7 bits (145), Expect = 1e-09
Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 29/144 (20%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH 427
L I + K +DLS NPL + L + L L+ C + ++
Sbjct: 13 QCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPEL---QVLDLSRCEIQTIE 68
Query: 428 --VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHN 483
+ L L +L ++ N + SL F L SL+ L
Sbjct: 69 DGAYQSLSHLSTLILTGN------------------PIQSLALGAFSGLSSLQKLVAVET 110
Query: 484 AIDHIEDSVFAKYEACVQVILTGN 507
+ +E+ + ++ + N
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHN 134
Score = 59.0 bits (143), Expect = 2e-09
Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 20/133 (15%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
+ L + F + + D+S+ N L+ L E LK+ S
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL---EVLKMAGNSFQ 458
Query: 425 SL---HVFPHLPSLESLDVSHNAPNIILCVYFQSLK------LTHCSLSSLH--VFPHLP 473
+F L +L LD+S + F SL + L S+ +F L
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518
Query: 474 SLESLDVSHNAID 486
SL+ + + N D
Sbjct: 519 SLQKIWLHTNPWD 531
Score = 53.2 bits (128), Expect = 1e-07
Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 27/135 (20%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
L+ + S+ F+ + L N + HL L + L + H +
Sbjct: 82 ILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPIGHLKTL---KELNVAHNLIQ 137
Query: 425 SL---HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLE-SLDV 480
S F +L +LE LD+S N K+ + L V +P L SLD+
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSN-------------KIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 481 SHNAIDHIEDSVFAK 495
S N ++ I+ F +
Sbjct: 185 SLNPMNFIQPGAFKE 199
Score = 48.2 bits (115), Expect = 4e-06
Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 31/119 (26%)
Query: 384 HCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESL 438
+N +L L+ L L + F P L+ L
Sbjct: 4 VEVVPNITYQCMELNFYKIPDNLPFSTK------NLDLSFNPLRHLGSYSFFSFPELQVL 57
Query: 439 DVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
D+S + ++ + L L +L ++ N I + F+
Sbjct: 58 DLSRC------------------EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98
Score = 40.9 bits (96), Expect = 0.001
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 29/112 (25%)
Query: 403 CLRHLTPLVA-CESLKLTHCSLSSLHVFPHLP-SLESLDVSHNAPNIILCVYFQSLKLTH 460
C+ + + C L + +LP S ++LD+S N
Sbjct: 3 CVEVVPNITYQCMELNFYK-------IPDNLPFSTKNLDLSFN----------------- 38
Query: 461 CSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
L L + F P L+ LD+S I IED + +ILTGNP+
Sbjct: 39 -PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 66.9 bits (164), Expect = 5e-12
Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 14/127 (11%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSLHV 428
+S+ QL + + + K +D+ NN L + L + + L L
Sbjct: 137 GVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE------FIAAGNNQLEELPE 190
Query: 429 FPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484
+LP L ++ +N+ P++ L + +S+ + L L +LP L ++ +N
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDLPLSL--ESIVAGNNILEELPELQNLPFLTTIYADNNL 248
Query: 485 IDHIEDS 491
+ + D
Sbjct: 249 LKTLPDL 255
Score = 63.9 bits (156), Expect = 5e-11
Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 24/141 (17%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---------------NNCLRHLTPLVAC-E 414
L++L L+S+ H + + S N LT NN L+ L+ L E
Sbjct: 77 ELNNLGLSSLPE--LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLE 134
Query: 415 SLKLTHCSLSSLHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFP 470
L +++ L L + L+ +DV +N+ P++ + + + + L L
Sbjct: 135 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL--EFIAAGNNQLEELPELQ 192
Query: 471 HLPSLESLDVSHNAIDHIEDS 491
+LP L ++ +N++ + D
Sbjct: 193 NLPFLTAIYADNNSLKKLPDL 213
Score = 51.1 bits (123), Expect = 5e-07
Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 19/134 (14%)
Query: 367 NQITNLSSL-----QLTSIHHMHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLT 419
+ +L S+ L + + + NN L + L E+L +
Sbjct: 212 DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSL------EALNVR 265
Query: 420 HCSLSSLHVFPHLPSLESLDVSHNAPNII--LCVYFQSLKLTHCSLSSLHVFPHLPSLES 477
L+ L SL LDVS N + + L L + + SL PSLE
Sbjct: 266 DNYLTDLP--ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL--CDLPPSLEE 321
Query: 478 LDVSHNAIDHIEDS 491
L+VS+N + +
Sbjct: 322 LNVSNNKLIELPAL 335
Score = 46.9 bits (112), Expect = 1e-05
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 16/126 (12%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSLHV 428
N+ LT + +D+S N + +L L + + SL
Sbjct: 263 NVRDNYLTDLPE--LPQSLTFLDVSENIFSGLSELPPNLY------YLNASSNEIRSL-- 312
Query: 429 FPHLPSLESLDVSHNAPNII--LCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
PSLE L+VS+N + L + L + L+ + +L+ L V +N +
Sbjct: 313 CDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVP--ELPQNLKQLHVEYNPLR 370
Query: 487 HIEDSV 492
D
Sbjct: 371 EFPDIP 376
Score = 46.1 bits (110), Expect = 2e-05
Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 28/152 (18%)
Query: 367 NQITNL--SSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLS 424
+ +T + + + S + A + + ++ L C + L+
Sbjct: 21 SNLTEMPVEAENVKSKTEYY-NAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELN 79
Query: 425 --SLHVFPH-LPSLESLDVSHNA----PNII------------------LCVYFQSLKLT 459
L P P LESL S N+ P + L + L ++
Sbjct: 80 NLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVS 139
Query: 460 HCSLSSLHVFPHLPSLESLDVSHNAIDHIEDS 491
+ L L + L+ +DV +N++ + D
Sbjct: 140 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL 171
Score = 43.4 bits (103), Expect = 1e-04
Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 21/134 (15%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNP-------LTNNCLRHLTPLVA-CESLKL 418
N + LS L ++++++ + + L + P ++NN L L L E L
Sbjct: 287 NIFSGLSEL-PPNLYYLNA-SSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIA 344
Query: 419 THCSLSSLHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPS 474
+ L+ + +L+ L V +N P+I +S++ + V +
Sbjct: 345 SFNHLAEVP--ELPQNLKQLHVEYNPLREFPDIP-----ESVEDLRMNSHLAEVPELPQN 397
Query: 475 LESLDVSHNAIDHI 488
L+ L V N +
Sbjct: 398 LKQLHVETNPLREF 411
Score = 36.9 bits (86), Expect = 0.013
Identities = 24/158 (15%), Positives = 52/158 (32%), Gaps = 25/158 (15%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---------------NNCLRHLTPLVA-CE 414
N SS ++ S+ +++++SNN L N L + L +
Sbjct: 303 NASSNEIRSL--CDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLK 360
Query: 415 SLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII-LCVYFQSLKLTHCSLSSLHVFPHLP 473
L + + L S+E L ++ + + L + L + L P +P
Sbjct: 361 QLHVEYNPLREFP--DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF---PDIP 415
Query: 474 -SLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
S+E L ++ + + + + +
Sbjct: 416 ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 35.0 bits (81), Expect = 0.060
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 399 LTNNCLRHL-TPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLK 457
++ L + +S + + S + E +++ + L L+
Sbjct: 18 RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELE 77
Query: 458 LTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVF 493
L + LSSL P LESL S N++ + +
Sbjct: 78 LNNLGLSSLP--ELPPHLESLVASCNSLTELPELPQ 111
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 65.5 bits (160), Expect = 9e-12
Identities = 27/165 (16%), Positives = 59/165 (35%), Gaps = 21/165 (12%)
Query: 364 PRANQITNLSSLQLTSIHHMHCFAHC---KQVDLSNNPLTNNCLRHLTPLVACESLKLTH 420
+ + + T I FA +++++ + L + + L + L L
Sbjct: 149 TKLQILRVGNMDTFTKIQRK-DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207
Query: 421 CSLSSL--HVFPHLPSLESLDVSHN--------------APNIILCVYFQSLKLTHCSLS 464
L S+E L++ ++I F+++K+T SL
Sbjct: 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267
Query: 465 SL-HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
+ + + L L+ S N + + D +F + + ++ L NP
Sbjct: 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312
Score = 44.0 bits (104), Expect = 7e-05
Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 43/132 (32%)
Query: 366 ANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
N I SS L SI K +DLSNN +T +S+
Sbjct: 32 RNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNRIT---------------------YISN 69
Query: 426 LHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHN 483
+L++L ++ N ++++ F L SLE LD+S+N
Sbjct: 70 -SDLQRCVNLQALVLTSN------------------GINTIEEDSFSSLGSLEHLDLSYN 110
Query: 484 AIDHIEDSVFAK 495
+ ++ S F
Sbjct: 111 YLSNLSSSWFKP 122
Score = 40.5 bits (95), Expect = 0.001
Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 22/89 (24%)
Query: 411 VACESLKLTHCSLSSLHVFPH--LPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH- 467
++C+ + S SL+ P +++SLD+S+N ++ +
Sbjct: 28 LSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNN------------------RITYISN 69
Query: 468 -VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
+L++L ++ N I+ IE+ F+
Sbjct: 70 SDLQRCVNLQALVLTSNGINTIEEDSFSS 98
Score = 30.1 bits (68), Expect = 2.0
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 459 THCSLSSLH---VFPHLP-SLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
C SS + L +++SLD+S+N I +I +S + ++LT N ++
Sbjct: 34 GICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT 90
Score = 27.8 bits (62), Expect = 8.7
Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 309 LTSITL--LQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRA 366
+S+ L+ + +E+ + L R D ES +++ +
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD-ESLFQVMKLLNQISGL 279
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPL 410
++ S QL S+ F + L NP +C + L
Sbjct: 280 LEL-EFSRNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC-PRIDYL 323
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 65.8 bits (161), Expect = 1e-11
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
N I+++S+L LTS+ +Q+ N L +LT L E L ++ +S
Sbjct: 144 NTISDISALSGLTSL---------QQLSFGNQVTDLKPLANLTTL---ERLDISSNKVSD 191
Query: 426 LHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
+ V L +LESL ++N + + L L L + L +L LD++
Sbjct: 192 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251
Query: 482 HNAIDHIED 490
+N I ++
Sbjct: 252 NNQISNLAP 260
Score = 65.4 bits (160), Expect = 2e-11
Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 20/141 (14%)
Query: 367 NQITNLSSL--------------QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVA 412
N+++++S L Q++ I + + ++ L+ N L + + L L
Sbjct: 187 NKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTN 244
Query: 413 CESLKLTHCSLSSLHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHV 468
L L + +S+L L L L + N + +L+L L +
Sbjct: 245 LTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 304
Query: 469 FPHLPSLESLDVSHNAIDHIE 489
+L +L L + N I I
Sbjct: 305 ISNLKNLTYLTLYFNNISDIS 325
Score = 65.0 bits (159), Expect = 2e-11
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
NQ+ ++ +L LT++ +DL+NN ++N L L+ L LKL +S+
Sbjct: 231 NQLKDIGTLASLTNL---------TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN 279
Query: 426 LHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
+ L +L +L+++ N I L L ++S + L L+ L
Sbjct: 280 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY 339
Query: 482 HNAIDHIE 489
+N + +
Sbjct: 340 NNKVSDVS 347
Score = 65.0 bits (159), Expect = 2e-11
Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 16/134 (11%)
Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
NQI+N+S L LT++ ++L+ N L + + ++ L L L ++S
Sbjct: 275 NQISNISPLAGLTAL---------TNLELNENQLED--ISPISNLKNLTYLTLYFNNISD 323
Query: 426 LHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
+ L L+ L +N ++ L H +S L +L + L ++
Sbjct: 324 ISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 383
Query: 482 HNAIDHIEDSVFAK 495
A + + A
Sbjct: 384 DQAWTNAPVNYKAN 397
Score = 62.3 bits (152), Expect = 1e-10
Identities = 18/127 (14%), Positives = 44/127 (34%), Gaps = 14/127 (11%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
I + + A + L +T+ T L +L+ + S+
Sbjct: 12 TPINQIFTDT--------ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKSI 61
Query: 427 HVFPHLPSLESLDVSHN----APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
+L +L ++ S+N + + + + ++ + +L +L L + +
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 121
Query: 483 NAIDHIE 489
N I I+
Sbjct: 122 NQITDID 128
Score = 49.6 bits (119), Expect = 1e-06
Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 18/134 (13%)
Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
N I+++S + LT + +++ NN +++ + L L L H +S
Sbjct: 319 NNISDISPVSSLTKL---------QRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367
Query: 426 LHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSL--SSLHVFP----HLPSLESLD 479
L +L + L ++ A Y ++ + + + + P S D
Sbjct: 368 LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPD 427
Query: 480 VSHNAIDHIEDSVF 493
++ N + + +
Sbjct: 428 ITWNLPSYTNEVSY 441
Score = 44.2 bits (105), Expect = 7e-05
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 20/96 (20%)
Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
+ P+ + T L L +++ L + +L
Sbjct: 9 TQDTPINQ--IFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRL---------- 56
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
+ S+ +L +L ++ S+N + I
Sbjct: 57 --------GIKSIDGVEYLNNLTQINFSNNQLTDIT 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 64.7 bits (158), Expect = 1e-11
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 10/157 (6%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN-NCLRHLTPLVACESLKLTHCSLSSLHVF 429
L+ +LT I + + + L N + + + L+ L L +SL L H +S ++
Sbjct: 74 FLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKL---KSLSLEHNGISDINGL 130
Query: 430 PHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI 485
HLP LESL + +N + +L L +S + L L++L +S N I
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 190
Query: 486 DHIEDSVFAKYEACVQVILTGNPVSADMVVKHCTLVV 522
+ A + + L + LVV
Sbjct: 191 SDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVV 225
Score = 58.1 bits (141), Expect = 2e-09
Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 16/128 (12%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN-NCLRHLTPLVACESLKLTHCSLSS 425
I + S FA + +L +T+ L + + + + + S
Sbjct: 12 TPIKQIFSDD--------AFAETIKDNLKKKSVTDAVTQNELNSI---DQIIANNSDIKS 60
Query: 426 LHVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
+ +LP++ L ++ N + L L + L L L+SL +
Sbjct: 61 VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120
Query: 482 HNAIDHIE 489
HN I I
Sbjct: 121 HNGISDIN 128
Score = 42.7 bits (101), Expect = 1e-04
Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 22/117 (18%)
Query: 394 LSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYF 453
P+ + L S++ L S++ + +++
Sbjct: 9 TVPTPIKQ--IFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNS---------- 56
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
+ S+ +LP++ L ++ N + I+ A + + L N V
Sbjct: 57 --------DIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103
Score = 39.7 bits (93), Expect = 0.001
Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 14/96 (14%)
Query: 367 NQITNLSSL--------------QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVA 412
NQI+++ L ++ + + + ++L + N + H + LV
Sbjct: 166 NQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 225
Query: 413 CESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII 448
++K T SL + + E +V + P
Sbjct: 226 PNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 261
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 66.2 bits (162), Expect = 1e-11
Identities = 37/198 (18%), Positives = 74/198 (37%), Gaps = 22/198 (11%)
Query: 309 LTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRA-N 367
L + + + + + + L+ L L + ++ + ++ ++ N
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA----YLDYYLDDIIDLFN 279
Query: 368 QITNLSSLQLT--SIHHMHCFAHC---KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCS 422
+TN+SS L +I + F++ + ++L N L L + L T
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL---KRLTFTSNK 336
Query: 423 LSSLHVFPHLPSLESLDVSHNAPNIILCVYF--------QSLKLTHCSLSSL-HVFPHLP 473
+ LPSLE LD+S N + C + L L+ + ++ F L
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396
Query: 474 SLESLDVSHNAIDHIEDS 491
LE LD H+ + + +
Sbjct: 397 QLEHLDFQHSNLKQMSEF 414
Score = 63.1 bits (154), Expect = 1e-10
Identities = 34/156 (21%), Positives = 55/156 (35%), Gaps = 21/156 (13%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
+ L + F + +D+S+ N L+ L E LK+ S
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL---EVLKMAGNSFQ 458
Query: 425 SL---HVFPHLPSLESLDVSHNA-----PNII-LCVYFQSLKLTHCSLSSLH--VFPHLP 473
+F L +L LD+S P Q L ++H + SL + L
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518
Query: 474 SLESLDVSHNAIDHIEDSVFAKYEACVQVI-LTGNP 508
SL+ LD S N I + + + + + LT N
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554
Score = 62.7 bits (153), Expect = 1e-10
Identities = 32/217 (14%), Positives = 64/217 (29%), Gaps = 28/217 (12%)
Query: 294 LSLSCPYRNYISVALLTSITLLQHLHPGSSDSN-------EIILKRFDLLKTLDPLRLNY 346
L LS N I T + +L + + + I F ++ L L L
Sbjct: 154 LDLS---SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRN 209
Query: 347 YKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHM-----HCFAHCKQVDLSNNPLT- 400
DS + + ++ L + + ++ + + L
Sbjct: 210 NFDSLN---VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 401 -----NNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII---LCVY 452
++ + L S L ++ + F + + L++ +
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326
Query: 453 FQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
+ L T + LPSLE LD+S N +
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363
Score = 62.7 bits (153), Expect = 2e-10
Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 29/146 (19%)
Query: 367 NQITNLSS--LQLTSIHHMHCFAHCKQVDLSNNPLTN----NCLRHLTPLVACESLKLTH 420
N + +SS L L + H +D ++ L + L L L ++H
Sbjct: 383 NGVITMSSNFLGLEQLEH---------LDFQHSNLKQMSEFSVFLSLRNL---IYLDISH 430
Query: 421 CSLSSL--HVFPHLPSLESLDVSHN------APNII-LCVYFQSLKLTHCSLSSLH--VF 469
+F L SLE L ++ N P+I L L+ C L L F
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 470 PHLPSLESLDVSHNAIDHIEDSVFAK 495
L SL+ L++SHN ++ +
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKC 516
Score = 59.3 bits (144), Expect = 1e-09
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 27/133 (20%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
+LS ++ +I + + L+ NP+ + L+ L + L +L+
Sbjct: 58 DLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSL---QKLVAVETNLA 113
Query: 425 SL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
SL HL +L+ L+V+HN QS KL F +L +LE LD+S
Sbjct: 114 SLENFPIGHLKTLKELNVAHN--------LIQSFKLPE-------YFSNLTNLEHLDLSS 158
Query: 483 NAIDHIEDSVFAK 495
N I I +
Sbjct: 159 NKIQSIYCTDLRV 171
Score = 51.2 bits (123), Expect = 6e-07
Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 16/131 (12%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTNNCLRH-LTPLVACESLKLTHCSLSSL 426
++S + F + ++ N N L T L L L+ C L L
Sbjct: 427 DISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 427 H--VFPHLPSLESLDVSHN-----APNIIL-CVYFQSLKLTHCSLSSL--HVFPHLP-SL 475
F L SL+ L++SHN Q L + + + H P SL
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545
Query: 476 ESLDVSHNAID 486
L+++ N
Sbjct: 546 AFLNLTQNDFA 556
Score = 47.7 bits (114), Expect = 7e-06
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 17/102 (16%)
Query: 403 CLRHLTPLVA-CESLKLTHCSLSSLHVFPHLP-SLESLDVSHN------APNIILCVYFQ 454
C+ + + C L + +LP S ++LD+S N + + Q
Sbjct: 3 CVEVVPNITYQCMELNFYK-------IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQ 55
Query: 455 SLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFA 494
L L+ C + ++ + L L +L ++ N I + F+
Sbjct: 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97
Score = 43.1 bits (102), Expect = 2e-04
Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 19/131 (14%)
Query: 371 NLSSLQLTSIHHMHCFAHCK--QVDLSNNPLTNNCLRH-LTPLVACESLKLTHCSLSSL- 426
+LS + I F + ++ L NN + N ++ + L E +L +
Sbjct: 183 DLSLNPMNFIQP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
Query: 427 ----HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
L L +L + L + L F L ++ S +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEF--------RLAYLDYYLDDIIDL--FNCLTNVSSFSLVS 291
Query: 483 NAIDHIEDSVF 493
I+ ++D +
Sbjct: 292 VTIERVKDFSY 302
Score = 35.4 bits (82), Expect = 0.046
Identities = 27/158 (17%), Positives = 45/158 (28%), Gaps = 49/158 (31%)
Query: 371 NLSSLQLTSIHHMHCFAHC---KQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
L+ + S+ + F+ +++ L N + HL L + L + H +
Sbjct: 82 ILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL---KELNVAHNLIQ 137
Query: 425 SLH---VFPHLPSLE----------------------------SLDVSHN-----APNII 448
S F +L +LE SLD+S N P
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197
Query: 449 LCVYFQSLKLTHCSLS---SLHVFPHLPSLESLDVSHN 483
+ L L + S L LE +
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235
Score = 29.6 bits (67), Expect = 2.6
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 450 CVYFQSLKLTHCSLSSLHVFPH--LPSLESLDVSHNAIDHIEDSVFAKY 496
CV C + + P S ++LD+S N + H+ F +
Sbjct: 3 CVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSF 51
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.8 bits (160), Expect = 2e-11
Identities = 71/496 (14%), Positives = 147/496 (29%), Gaps = 191/496 (38%)
Query: 70 LHMKAT-LAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISR------APNY 122
A+ L E+ L + D +P + + + L ++S +
Sbjct: 26 SFFIASQLQEQFNKILPEPTEGFAAD---DEPTTPAELVGK-F-LGYVSSLVEPSKVGQF 80
Query: 123 EKELELCNYYLELDERNFHCWDYRRYV--TDRHKVAP--LKELNYSTEKIEANFSNYSAW 178
++ L LC L E F Y+ D H +A L+E + + K + NY
Sbjct: 81 DQVLNLC-----LTE--FE----NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY--- 126
Query: 179 HYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFY-----QRWLLGE 233
++++ P SA+F + +A Q
Sbjct: 127 -ITARIM-AKRPFDKKS---------------NSALFRAVGEGNAQLVAIFGGQ------ 163
Query: 234 RTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFL 293
G T F +L DL T
Sbjct: 164 ---------------GNTDDYFEELRDLYQT----------------------------- 179
Query: 294 LSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESK 353
Y + + S L L + D+ ++ + ++L+ L+ + +
Sbjct: 180 ------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE--------NPSNT 225
Query: 354 YKIETFIQTNPRANQITNLS--SLQLTSIHHMHCFAH----CKQVDLSNNPLTNNCLRHL 407
+ ++ + P +S + + AH K + + L + L+
Sbjct: 226 PDKD-YLLSIP-------ISCPLIGVIQ------LAHYVVTAKLLGFTPGEL-RSYLKGA 270
Query: 408 TP-----LVAC--------ESLK---------LTHCSLSSLHVFPHL---PSL--ESLDV 440
T + A ES L + +P+ PS+ +SL+
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 441 SHNAPNIILCVYFQSLKLTHCSLSSL--HVF---PHLPSLESLDVS-HNAIDHIEDSVFA 494
+ P+ +L + ++ + + +V HLP+ + +++S N +
Sbjct: 331 NEGVPSPMLSI-------SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN------- 376
Query: 495 KYEACVQVILTGNPVS 510
++++G P S
Sbjct: 377 -------LVVSGPPQS 385
Score = 58.9 bits (142), Expect = 4e-09
Identities = 83/530 (15%), Positives = 157/530 (29%), Gaps = 177/530 (33%)
Query: 38 QEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKAT-LAEEELHELV-----DRELKL 91
+ + +VL L + L ++H L + + L
Sbjct: 70 SLVEPSKVGQFDQVL-------------NLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 92 TKDCLLAQPKSYGTWFQRCYVLDH-ISRAPN-------YEKELELC----------NYYL 133
K L K+Y + + N E +L +Y+
Sbjct: 117 VKTKELI--KNY---ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 134 ELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPN 193
EL + Y+ Y V L I+ SA L L+
Sbjct: 172 ELRDL------YQTY---HVLVGDL---------IKF-----SA----ETLSELI----- 199
Query: 194 NHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGERTSPVQ--IISAGV-LP-SG 249
++ +K FT+ + WL +P + ++S + P G
Sbjct: 200 -RTTLDAEKV-----------FTQGLN-----ILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 250 VT----FVTFNQLVDLT-------STSQIKVDSNVLM--------SWTSLNGASRSFIWV 290
V +V +L+ T ++ SW S + R I V
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 291 RFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNE--------II-LKRFDLLKTLDP 341
F + + C Y Y + +L ++L+ S ++NE I L + + ++
Sbjct: 303 LFFIGVRC-YEAYPNTSL--PPSILE----DSLENNEGVPSPMLSISNLTQEQVQDYVN- 354
Query: 342 LRLNYYKDSESKYKI------ETFIQT-NPRANQITNLSSLQLTSIHHMHCFAHCKQVDL 394
+ N + + + +I + + + P++ L L L ++ + Q
Sbjct: 355 -KTNSHLPAGKQVEISLVNGAKNLVVSGPPQS-----LYGLNL-TLRKAKAPSGLDQ--- 404
Query: 395 SNNPLTNNCLRHLTPLVACESLKLT---HCSL--SSLHVFPHLPSLESLDVSHNAPNIIL 449
S P + R + L + H L + + L +VS NA +I +
Sbjct: 405 SRIPFSE---RK--LKFSNRFLPVASPFHSHLLVPASDLI--NKDLVKNNVSFNAKDIQI 457
Query: 450 CVY-------FQSLK------LTHCSLSSLHVFPHLPSLESLDVSHNAID 486
VY + L + C + L V + +H +D
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDC-IIRLPV--KWETTTQFKATH-ILD 503
Score = 29.6 bits (66), Expect = 3.2
Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 50/177 (28%)
Query: 100 PKS-YG--TWFQRCYVLDHI--SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHK 154
P+S YG ++ + SR P E++L+ N +L + FH
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP-FHS------------ 429
Query: 155 VAPLKELNYSTEKIEANFSNYS-AWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESA 213
L L +++ I + + +++ + +P+ + L ++E +V+
Sbjct: 430 --HL--LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR-VLSGSISE-RIVD-C 482
Query: 214 VFTEPKDQSAW-----FYQRWLL----------GERTSP------VQIISAGVLPSG 249
+ P W F +L G T V++I AG L
Sbjct: 483 IIRLPVK---WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN 536
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 63.5 bits (155), Expect = 4e-11
Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 28/130 (21%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSLH 427
++ +T+I ++ L N +T L+ L L L L+ S+S++
Sbjct: 177 RIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNL---AKLGLSFNSISAVD 232
Query: 428 --VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSL-HVFPHLPSLESLDVSHNA 484
+ P L L +++N L + ++ + + +N
Sbjct: 233 NGSLANTPHLRELHLNNN------------------KLVKVPGGLADHKYIQVVYLHNNN 274
Query: 485 IDHIEDSVFA 494
I I + F
Sbjct: 275 ISAIGSNDFC 284
Score = 61.6 bits (150), Expect = 1e-10
Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 16/136 (11%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH 427
LS QL + +++ + N +T + L + ++L L S
Sbjct: 106 YLSKNQLKELP-EKMPKTLQELRVHENEITKVRKSVFNGLNQM---IVVELGTNPLKSSG 161
Query: 428 V----FPHLPSLESLDVSHNAPNIILCVYFQSLK---LTHCSLSSLH--VFPHLPSLESL 478
+ F + L + ++ I SL L ++ + L +L L
Sbjct: 162 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 221
Query: 479 DVSHNAIDHIEDSVFA 494
+S N+I +++ A
Sbjct: 222 GLSFNSISAVDNGSLA 237
Score = 53.5 bits (129), Expect = 7e-08
Identities = 16/136 (11%), Positives = 40/136 (29%), Gaps = 27/136 (19%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
+L ++T + + LS N ++ N L + L L L + L
Sbjct: 198 HLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL---RELHLNNNKLV 253
Query: 425 SL-HVFPHLPSLESLDVSHN------APNIILCVYFQSL-KLTHCSLS-------SLH-- 467
+ ++ + + +N + + Y + SL +
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313
Query: 468 VFPHLPSLESLDVSHN 483
F + ++ + +
Sbjct: 314 TFRCVYVRAAVQLGNY 329
Score = 39.2 bits (92), Expect = 0.002
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 454 QSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
L L + ++ + F +L +L +L + +N I I FA
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 98
Score = 30.4 bits (69), Expect = 1.4
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 455 SLKLTHCSLSSLHVFPHL--PSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
L++ CS L P P LD+ +N I I+D F + +IL N +S
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 63.1 bits (154), Expect = 5e-11
Identities = 29/152 (19%), Positives = 48/152 (31%), Gaps = 34/152 (22%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSLH 427
+S +LT I ++ L +N + L + L L L H + +
Sbjct: 178 RISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKL---YRLGLGHNQIRMIE 233
Query: 428 --VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSL-HVFPHLPSLESLDVSHNA 484
LP+L L + +N LS + P L L+ + + N
Sbjct: 234 NGSLSFLPTLRELHLDNN------------------KLSRVPAGLPDLKLLQVVYLHTNN 275
Query: 485 IDHIEDSVFAKYEACVQVI------LTGNPVS 510
I + + F V+ L NPV
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307
Score = 55.4 bits (134), Expect = 1e-08
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 17/136 (12%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH 427
+S L I + + ++ + +N + L + +++ L +
Sbjct: 108 YISKNHLVEIP-PNLPSSLVELRIHDNRIRKVPKGVFSGLRNM---NCIEMGGNPLENSG 163
Query: 428 V----FPHLPSLESLDVSHNAPNIILCVYFQSLK---LTHCSLSSLH--VFPHLPSLESL 478
F L L L +S I ++L L H + ++ L L
Sbjct: 164 FEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL 222
Query: 479 DVSHNAIDHIEDSVFA 494
+ HN I IE+ +
Sbjct: 223 GLGHNQIRMIENGSLS 238
Score = 45.0 bits (107), Expect = 3e-05
Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 31/118 (26%)
Query: 385 CFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLD 439
C H + V S+ L T L L + +S L F L L +L
Sbjct: 31 CHCHLRVVQCSDLGLKAVPKEISPDTT------LLDLQNNDISELRKDDFKGLQHLYALV 84
Query: 440 VSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
+ +N +S +H F L L+ L +S N + I ++ +
Sbjct: 85 LVNN------------------KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS 124
Score = 36.9 bits (86), Expect = 0.013
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 424 SSLHVFPHLPSLESLDVSHNA--PNIILCVYFQSLKLTHCSLSSLHVFPHL--PSLESLD 479
S +P L+SL +++A P C L++ CS L P P LD
Sbjct: 5 SGAETTSGIPDLDSLPPTYSAMCPFGCHC----HLRVVQCSDLGLKAVPKEISPDTTLLD 60
Query: 480 VSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
+ +N I + F + ++L N +S
Sbjct: 61 LQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Score = 31.5 bits (72), Expect = 0.65
Identities = 9/85 (10%), Positives = 25/85 (29%), Gaps = 13/85 (15%)
Query: 371 NLSSLQLTSI-HHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESL--------KL 418
+L + +L+ + + + V L N +T N + V +
Sbjct: 247 HLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306
Query: 419 THCSLSSLHVFPHLPSLESLDVSHN 443
+ + F + ++ +
Sbjct: 307 PYWEVQP-ATFRCVTDRLAIQFGNY 330
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 60.7 bits (148), Expect = 6e-11
Identities = 21/131 (16%), Positives = 49/131 (37%), Gaps = 17/131 (12%)
Query: 367 NQITNLSSL-QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLS- 424
TN + + L+++ +++ + +T++ + +L+ L + L ++H +
Sbjct: 76 IHATNYNPISGLSNL---------ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 425 -SLHVFPHLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESL 478
L LP + S+D+S+N + +SL + + P L L
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQL 186
Query: 479 DVSHNAIDHIE 489
I +
Sbjct: 187 YAFSQTIGGKK 197
Score = 34.2 bits (79), Expect = 0.059
Identities = 11/100 (11%), Positives = 31/100 (31%), Gaps = 21/100 (21%)
Query: 386 FAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAP 445
F L + N + L + L + +++ L + +++ L +++
Sbjct: 22 FKAYLNGLLGQSSTANITEAQMNSL---TYITLANINVTDLTGIEYAHNIKDLTINNI-- 76
Query: 446 NIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI 485
++ + L +LE L + +
Sbjct: 77 ----------------HATNYNPISGLSNLERLRIMGKDV 100
Score = 29.5 bits (67), Expect = 2.0
Identities = 3/36 (8%), Positives = 16/36 (44%)
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
+ L + +++ L + +++ L +++ +
Sbjct: 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 62.0 bits (151), Expect = 7e-11
Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 8/132 (6%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
N LT++ + LS N L L L P L L L+ L V
Sbjct: 16 NCDKRNLTALP-PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Query: 431 HLPSLESLDVSHNAPNIILCVYF-----QSLKLTHCSLSSL--HVFPHLPSLESLDVSHN 483
LP L +LD+SHN + + L ++ L+SL L L+ L + N
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 484 AIDHIEDSVFAK 495
+ + +
Sbjct: 135 ELKTLPPGLLTP 146
Score = 57.4 bits (139), Expect = 2e-09
Identities = 35/148 (23%), Positives = 54/148 (36%), Gaps = 23/148 (15%)
Query: 364 PRANQITNLSSLQLTSIHHM--HCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHC 421
P+ I +LS L + + Q++L LT L+ L +L L+H
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHN 87
Query: 422 SLSSLH-VFPHLPSLESLDVSHN-----APNIILCVYF------QSLKLTHCSLSSLH-- 467
L SL + LP+L LDVS N Q L L L +L
Sbjct: 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA-----LRGLGELQELYLKGNELKTLPPG 142
Query: 468 VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
+ P LE L +++N + + +
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNG 170
Score = 51.6 bits (124), Expect = 2e-07
Identities = 40/192 (20%), Positives = 61/192 (31%), Gaps = 30/192 (15%)
Query: 334 DLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVD 393
DL K L L+ NL +LT + +D
Sbjct: 28 DLPKDTTILHLSENLLY----TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83
Query: 394 LSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESLDVSHNA----- 444
LS+N L + + L L L ++ L+SL L L+ L + N
Sbjct: 84 LSHNQLQSLPLLGQTLPAL---TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 445 PNIILCVYFQSL-KLTHCSLS-----SLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKY 496
P + KL SL+ L + L +L++L + N++ I F
Sbjct: 141 PGL-----LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS- 194
Query: 497 EACVQVILTGNP 508
L GNP
Sbjct: 195 HLLPFAFLHGNP 206
Score = 27.8 bits (62), Expect = 9.8
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 455 SLKLTHCSLSSLHVFP-HLP-SLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
S +C +L P LP L +S N + + Y Q+ L ++
Sbjct: 11 SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 61.6 bits (150), Expect = 9e-11
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 5/123 (4%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
NL +T + + + + N+ + + L + + L L+H +S L
Sbjct: 25 NLGKQSVTDLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHNQISDLSPLK 82
Query: 431 HLPSLESLDVSHNAPNIILCVYFQSLK---LTHCSLSSLHVFPHLPSLESLDVSHNAIDH 487
L LE L V+ N + + L L + L HL +LE L + +N +
Sbjct: 83 DLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS 142
Query: 488 IED 490
I
Sbjct: 143 IVM 145
Score = 56.2 bits (136), Expect = 6e-09
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
N + + S+ M F + K++ LS+N +++ L L L E L + L +L+ P
Sbjct: 47 NGDNSNIQSLAGMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKNLNGIP 104
Query: 431 HLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
L L + +N ++I + L + + L S+ + L LE LD+ N I
Sbjct: 105 SA-CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT 163
Query: 487 HIED 490
+
Sbjct: 164 NTGG 167
Score = 49.6 bits (119), Expect = 8e-07
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 399 LTNNCLRHLTPLVACESLK---LTHCSLSSLHVFPHLPSLESLDVSHNA----PNIILCV 451
+ + P + L S++ L L +++ + ++ +
Sbjct: 4 QRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFT 63
Query: 452 YFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
+ L L+H +S L L LE L V+ N + ++
Sbjct: 64 NLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLN 101
Score = 31.9 bits (73), Expect = 0.36
Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 14/96 (14%)
Query: 367 NQITNLSSL--------------QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVA 412
N++ ++ L ++T+ + +DL+ N +++ L
Sbjct: 138 NKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYI 197
Query: 413 CESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII 448
++K S + + S V P
Sbjct: 198 TNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYT 233
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 61.9 bits (151), Expect = 1e-10
Identities = 20/149 (13%), Positives = 52/149 (34%), Gaps = 26/149 (17%)
Query: 367 NQITNLSSL-----------QLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVA 412
N + L ++ + K + L+NN +T + +
Sbjct: 90 NYVQELLVGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRV-- 146
Query: 413 CESLKLTHCSLSSL---HVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSS 465
+ L L + ++ + +LE L++ +N ++ ++L L+ L+
Sbjct: 147 -QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF 205
Query: 466 LH-VFPHLPSLESLDVSHNAIDHIEDSVF 493
+ F + + + +N + IE ++
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLVLIEKALR 234
Score = 60.8 bits (148), Expect = 3e-10
Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 12/150 (8%)
Query: 368 QITNLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTN---NCLRHLTPLVACESLKLTHC 421
+I ++ L +DLS NPL+ L T L E L L+
Sbjct: 13 KIEKVTDSSLKQALA-SLRQSAWNVKELDLSGNPLSQISAADLAPFTKL---ELLNLSSN 68
Query: 422 SLSSLHVFPHLPSLESLDVSHNA-PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDV 480
L L +L +LD+++N +++ ++L + ++S + +++ +
Sbjct: 69 VLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS-CSRGQGKKNIYL 127
Query: 481 SHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
++N I + D + L N +
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
Score = 60.4 bits (147), Expect = 4e-10
Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 33/141 (23%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT--------------NNCLRHLTP--LVACE 414
NLSS L + + + +DL+NN + NN + ++ +
Sbjct: 64 NLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKK 123
Query: 415 SLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHL 472
++ L + ++ L ++ LD+ N ++ +++ +
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLN-------------EID--TVNFAELAASS 168
Query: 473 PSLESLDVSHNAIDHIEDSVF 493
+LE L++ +N I ++ V
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVV 189
Score = 59.2 bits (144), Expect = 8e-10
Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 19/132 (14%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT----NNCLRHLTPLVACESLKLTHCS 422
N+IT L L + + +DL N + L E L L +
Sbjct: 130 NKITMLRDLDEGCRSRV------QYLDLKLNEIDTVNFAELAASSDTL---EHLNLQYNF 180
Query: 423 LSSLHVFPHLPSLESLDVSHN-----APNIILCVYFQSLKLTHCSLSSL-HVFPHLPSLE 476
+ + L++LD+S N P + L + L + +LE
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240
Query: 477 SLDVSHNAIDHI 488
D+ N
Sbjct: 241 HFDLRGNGFHCG 252
Score = 39.6 bits (93), Expect = 0.002
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 21/74 (28%)
Query: 425 SLH-VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVS 481
++H + + + V+ + SL + +++ LD+S
Sbjct: 1 AIHEIKQNGNRYKIEKVTDS------------------SLKQALASLRQSAWNVKELDLS 42
Query: 482 HNAIDHIEDSVFAK 495
N + I + A
Sbjct: 43 GNPLSQISAADLAP 56
Score = 30.0 bits (68), Expect = 1.8
Identities = 9/86 (10%), Positives = 21/86 (24%), Gaps = 15/86 (17%)
Query: 367 NQITNLSS--LQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLS 424
N++ + ++ H DL N LR + ++ +
Sbjct: 224 NKLVLIEKALRFSQNLEH---------FDLRGNGFHCGTLRDFFSK----NQRVQTVAKQ 270
Query: 425 SLHVFPHLPSLESLDVSHNAPNIILC 450
++ E + C
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCC 296
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 62.8 bits (153), Expect = 1e-10
Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 12/146 (8%)
Query: 371 NLSSLQLTSIHHM----HCFAHCKQVDLSNNPLTNNC--LRHLTPLVACESLKLTHCSLS 424
LS L S+ + +D+S N + + L L+ +
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM---RFLNLSSTGIR 423
Query: 425 SLHVFPHLPSLESLDVSHNAPNIILCVYF--QSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
+ +LE LDVS+N + Q L ++ L +L P L + +S
Sbjct: 424 VVK-TCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISR 482
Query: 483 NAIDHIEDSVFAKYEACVQVILTGNP 508
N + + D +F + + ++ L NP
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLHTNP 508
Score = 58.6 bits (142), Expect = 3e-09
Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 22/143 (15%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
L S ++ +I F +DLS+N L++ + L+ L + L L
Sbjct: 56 ILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL---KYLNLMGNPYQ 111
Query: 425 SL---HVFPHLPSLESLDVSH-NAPNIILCVYFQSLK------LTHCSLSSL--HVFPHL 472
+L +FP+L +L++L + + + I + F L + SL + +
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171
Query: 473 PSLESLDVSHNAIDHIEDSVFAK 495
+ L + + + +
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADI 194
Score = 54.7 bits (132), Expect = 5e-08
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 411 VACESLKLTHCSLSSLHVFPH--LPSLESLDVSHN------APNIILCVYFQSLKLTHCS 462
++C++ + S P +++SLD+S N ++ C Q L L
Sbjct: 2 LSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61
Query: 463 LSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
++++ F L SLE LD+S N + + S F
Sbjct: 62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96
Score = 53.2 bits (128), Expect = 1e-07
Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 25/118 (21%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
NLSS + + + +D+SNN L + L L L + L ++ L +L
Sbjct: 416 NLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFSL-FLPRL---QELYISRNKLKTLPDAS 470
Query: 431 HLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAID 486
P L + +S N L S+ +F L SL+ + + N D
Sbjct: 471 LFPVLLVMKISRN------------------QLKSVPDGIFDRLTSLQKIWLHTNPWD 510
Score = 44.3 bits (105), Expect = 9e-05
Identities = 17/171 (9%), Positives = 47/171 (27%), Gaps = 32/171 (18%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH 427
+ +L L + + + L + L + L+L +L+
Sbjct: 154 EIKALSLRNYQS-QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212
Query: 428 --VFPHLPSLESLDVSHNAPNIILCVYF-------------QSLKLTHCSLSSLHVFP-- 470
P + +++ F ++ C+L+ L F
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272
Query: 471 -----------HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
++ L + + + +V++ E ++ + + V
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 62.9 bits (153), Expect = 1e-10
Identities = 48/236 (20%), Positives = 81/236 (34%), Gaps = 43/236 (18%)
Query: 284 SRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEII-LKRFDLLKTLDPL 342
++F ++ L +L + LT+I + + N+++ L + +L L L
Sbjct: 355 DQTFKFLEKLQTL------DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408
Query: 343 RLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQ---VDLSNNPL 399
N ++ + Y QI L+ + +S + + L N L
Sbjct: 409 SENRLENLDILY-----FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463
Query: 400 -----TNNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIILCVY 452
T C L + L L H L+SL VF HL +L L ++ N
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN--------- 514
Query: 453 FQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
L+ L +LE LD+S N + VF + +T N
Sbjct: 515 ---------RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVS---LSVLDITHNK 558
Score = 62.1 bits (151), Expect = 2e-10
Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 9/129 (6%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH 427
NL+ ++ I F ++LS N L + L + L ++ +
Sbjct: 296 NLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354
Query: 428 --VFPHLPSLESLDVSHNA-PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484
F L L++LD+ NA I + L+ L +L + + +S N
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN--LTANLIHLSENR 412
Query: 485 IDHIEDSVF 493
+++++ F
Sbjct: 413 LENLDILYF 421
Score = 61.4 bits (149), Expect = 4e-10
Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 26/145 (17%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT----NNCLRHLTPLVACESLKLTHCS 422
N I +++ + + + ++L + R+L L L L
Sbjct: 34 NYIRTVTASSFPFLEQL------QLLELGSQYTPLTIDKEAFRNLPNL---RILDLGSSK 84
Query: 423 LSSLH--VFPHLPSLESLDVSHN--APNIILCVYFQSLK------LTHCSLSSLH---VF 469
+ LH F L L L + + ++ YF++LK L+ + SL+ F
Sbjct: 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144
Query: 470 PHLPSLESLDVSHNAIDHIEDSVFA 494
L SL+S+D S N I + +
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELE 169
Score = 58.7 bits (142), Expect = 3e-09
Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 27/142 (19%)
Query: 359 FIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC--ESL 416
+ N +S Q S+ H H + + + L L
Sbjct: 215 GWTVDITGNFSNAISKSQAFSLILAH---HIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271
Query: 417 KLTHCSLSSL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHL 472
L+H + SL VF L L+ L++++N ++ + F L
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYN------------------KINKIADEAFYGL 313
Query: 473 PSLESLDVSHNAIDHIEDSVFA 494
+L+ L++S+N + + S F
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFY 335
Score = 58.7 bits (142), Expect = 3e-09
Identities = 30/204 (14%), Positives = 60/204 (29%), Gaps = 21/204 (10%)
Query: 304 ISVALLTSITLLQHLHPGSSDSNEIILKR-FDLLKTLDPLRLNYYKDSESKYKIETFIQT 362
+ ++ L L + + L F L +L + + +
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL--VCEHELEPL 171
Query: 363 NPRANQITNLSSLQLTSIHHM---HCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLT 419
+ +L++ L S + C + + L ++ N ++
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI--- 228
Query: 420 HCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLK--------LTHCSLSSL--HVF 469
S S + + F L L+H + SL VF
Sbjct: 229 --SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286
Query: 470 PHLPSLESLDVSHNAIDHIEDSVF 493
L L+ L++++N I+ I D F
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAF 310
Score = 52.9 bits (127), Expect = 2e-07
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 415 SLKLTHCSLSSL-HVFPHLPSLESLDVSHNAPNIILCVYFQSL-KLTHCSLSS------- 465
++ +L V L + E L +S N + F L +L L S
Sbjct: 5 DGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64
Query: 466 -LHVFPHLPSLESLDVSHNAIDHIEDSVFA 494
F +LP+L LD+ + I + F
Sbjct: 65 DKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94
Score = 52.1 bits (125), Expect = 3e-07
Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 25/149 (16%)
Query: 371 NLSSLQLTSIHHMHCFAHC---KQVDLSNNPLTNNCLRH--LTPLVACESLKLTHCSLSS 425
+L S ++ +H F ++ L L++ L+ L A L L+ + S
Sbjct: 79 DLGSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137
Query: 426 LH---VFPHLPSLESLDVSHNAPNIILCVYFQSLK---LTHCSLSSLHVFPHLP------ 473
L+ F L SL+S+D S N ++ + L+ L+ SL++ ++ +
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197
Query: 474 -------SLESLDVSHNAIDHIEDSVFAK 495
LE LDVS N F+
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSN 226
Score = 42.5 bits (100), Expect = 4e-04
Identities = 40/246 (16%), Positives = 74/246 (30%), Gaps = 33/246 (13%)
Query: 254 TFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSIT 313
N L + I ++ +S L + + + N + L +
Sbjct: 370 RDNALTTIHFIPSIP---DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426
Query: 314 LLQHLHPGSSDSNEIILKR-FDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNL 372
LQ L + + + +L+ L L + ++ +T + L
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFL-------GENMLQLAWETELCWDVFEGL 479
Query: 373 SSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHL 432
S LQ + L++N L + + L A L L L+ L
Sbjct: 480 SHLQ--------------VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525
Query: 433 PSLESLDVSHNAPNIILCVYFQSLKLT-------HCSLSSLHVFPHLPSLESLDVSHNAI 485
+LE LD+S N F SL + C L F + + ++ ++
Sbjct: 526 ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICEC-ELSTFINWLNHTNVTIAGPPA 584
Query: 486 DHIEDS 491
D
Sbjct: 585 DIYCVY 590
Score = 41.3 bits (97), Expect = 7e-04
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 455 SLKLTHCSLSSL-HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
++ +L V L + E L +S N I + S F E + L
Sbjct: 5 DGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 61.8 bits (150), Expect = 1e-10
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 18/143 (12%)
Query: 366 ANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT----NNCLRHLTPLVACESLKLTHC 421
A+ I + S QL ++ ++ +DLS+N L+ LT L SL L+H
Sbjct: 19 ASNILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNL---HSLLLSHN 74
Query: 422 SLSSLH--VFPHLPSLESLDVSHNA----PNIIL--CVYFQSLKLTHCSLSSL--HVFPH 471
L+ + F +P+L LD+S N + + L L + + + + F
Sbjct: 75 HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134
Query: 472 LPSLESLDVSHNAIDHIEDSVFA 494
+ L+ L +S N I +
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIK 157
Score = 61.8 bits (150), Expect = 2e-10
Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 27/148 (18%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
LS L I F + DLS+N L L L E L L + +
Sbjct: 70 LLSHNHLNFISS-EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL---EVLLLYNNHIV 125
Query: 425 SL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
+ + F + L+ L +S N +++ + + LP L LD+S
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQN-------------QISRFPVELIKDGNKLPKLMLLDLSS 172
Query: 483 NAIDHIEDSVFAKYEACVQ--VILTGNP 508
N + + + K A V+ + L NP
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNP 200
Score = 46.8 bits (111), Expect = 1e-05
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 23/103 (22%)
Query: 414 ESLKLTHCSLSSLH---VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--V 468
L L+H +LS L L +L SL L+H L+ +
Sbjct: 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLL------------------LSHNHLNFISSEA 83
Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
F +P+L LD+S N + +++ +F+ +A ++L N +
Sbjct: 84 FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126
Score = 39.1 bits (91), Expect = 0.003
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 23/86 (26%)
Query: 411 VACESLKLTHCSLSSLHVFPHLPS-LESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVF 469
++C +L + V LPS LD+SHN L+ L +
Sbjct: 23 LSCSKQQLPN-------VPQSLPSYTALLDLSHN-------------NLS--RLRAEWTP 60
Query: 470 PHLPSLESLDVSHNAIDHIEDSVFAK 495
L +L SL +SHN ++ I F
Sbjct: 61 TRLTNLHSLLLSHNHLNFISSEAFVP 86
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 62.6 bits (152), Expect = 1e-10
Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 10/147 (6%)
Query: 368 QITNLSSLQLTSIH--HMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCS 422
+I ++ L + K++DLS NPL+ L T L E L L+
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL---ELLNLSSNV 69
Query: 423 LSSLHVFPHLPSLESLDVSHNA-PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
L L +L +LD+++N +++ ++L + ++S + +++ ++
Sbjct: 70 LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS-CSRGQGKKNIYLA 128
Query: 482 HNAIDHIEDSVFAKYEACVQVILTGNP 508
+N I + D + L N
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNE 155
Score = 61.0 bits (148), Expect = 4e-10
Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 25/146 (17%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT--------------NNCLRHLTP--LVACE 414
NLSS L + + + +DL+NN + NN + ++ +
Sbjct: 64 NLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKK 123
Query: 415 SLKLTHCSLSSL--HVFPHLPSLESLDVSHN-------APNIILCVYFQSLKLTHCSLSS 465
++ L + ++ L ++ LD+ N A + L L + +
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183
Query: 466 LHVFPHLPSLESLDVSHNAIDHIEDS 491
+ L++LD+S N + +
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMGPE 209
Score = 43.7 bits (103), Expect = 1e-04
Identities = 19/169 (11%), Positives = 38/169 (22%), Gaps = 48/169 (28%)
Query: 367 NQITNLSS--LQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHL----------------- 407
N++ + ++ H DL N LR
Sbjct: 224 NKLVLIEKALRFSQNLEH---------FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274
Query: 408 ---TPLVACESLKLTH-----CSLSSLHVFPHLPSLES-----LDVSHNAPNIILCVYF- 453
C L H C L +L+ L + + C
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334
Query: 454 ----QSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKY 496
+ + ++ V + +L+ A+D + +
Sbjct: 335 QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAH 383
Score = 39.1 bits (91), Expect = 0.004
Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 20/69 (28%)
Query: 428 VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAI 485
+ + + V+ + SL + +++ LD+S N +
Sbjct: 5 IKQNGNRYKIEKVTDS------------------SLKQALASLRQSAWNVKELDLSGNPL 46
Query: 486 DHIEDSVFA 494
I + A
Sbjct: 47 SQISAADLA 55
Score = 35.6 bits (82), Expect = 0.042
Identities = 15/206 (7%), Positives = 44/206 (21%), Gaps = 20/206 (9%)
Query: 293 LLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSES 352
+ +++ ++ T+ H G+ ++ D L L S
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323
Query: 353 KYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFA---HCKQVDLSNNPLTNNCLRHLTP 409
+ + + N + + Q ++ ++ L
Sbjct: 324 ETERLECERENQARQREIDALKEQYRTVID-QVTLRKQAKITLEQKKKALDEQVSNGRRA 382
Query: 410 LVACESLKLTHCSLSSL-HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHV 468
+ L H L+ L + +
Sbjct: 383 HAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKR---------------YEEMYVEQQ 427
Query: 469 FPHLPSLESLDVSHNAIDHIEDSVFA 494
++ D+ + + +
Sbjct: 428 SVQNNAIRDWDMYQHKETQLAEENAR 453
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 61.0 bits (148), Expect = 4e-10
Identities = 44/237 (18%), Positives = 83/237 (35%), Gaps = 27/237 (11%)
Query: 272 NVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILK 331
++L + W F+ L + + ++++ L L D + LK
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276
Query: 332 RFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQ 391
+ + + + + +++I I N + +H M C +
Sbjct: 277 ALSIHQ----VVSDVF------GFPQSYIYEIFSNMNIKNFTVSGTRMVH-MLCPSKISP 325
Query: 392 ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL----HVFPHLPSLESLDVSHNA 444
+D SNN LT+ + L E+L L L L + + SL+ LD+S N+
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 445 PNIIL-CVYFQSLK------LTHCSLSSLHVFPHLPS-LESLDVSHNAIDHIEDSVF 493
+ K ++ L+ +F LP ++ LD+ N I I V
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDT-IFRCLPPRIKVLDLHSNKIKSIPKQVV 441
Score = 56.0 bits (135), Expect = 1e-08
Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 16/140 (11%)
Query: 367 NQIT-NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCS 422
++ + S L + +++S N ++ + + L+ L L ++H
Sbjct: 1 SEFLVDRSKNGLIHVPK-DLSQKTTILNISQNYISELWTSDILSLSKL---RILIISHNR 56
Query: 423 LSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLK---LTHCSLSSLH---VFPHLPS 474
+ L VF LE LD+SHN I C +LK L+ + +L F ++
Sbjct: 57 IQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116
Query: 475 LESLDVSHNAIDHIEDSVFA 494
L+ L +S ++ A
Sbjct: 117 LKFLGLSTTHLEKSSVLPIA 136
Score = 46.4 bits (110), Expect = 2e-05
Identities = 27/230 (11%), Positives = 62/230 (26%), Gaps = 24/230 (10%)
Query: 290 VRFLLSLSCPYRNYISVALLTSITL--LQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYY 347
+ LL L Y L L + P + + + I+ + L+ +
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200
Query: 348 KDSESKYKIETFIQTNPRANQITNLS--SLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLR 405
+ + + +++NL+ +++ T + + ++N
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV--- 257
Query: 406 HLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLK------LT 459
L + + SL +L + V + ++ T
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSI---------HQVVSDVFGFPQSYIYEIFSNMNIKNFT 308
Query: 460 HCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
+H + LD S+N + +IL N
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358
Score = 36.8 bits (85), Expect = 0.018
Identities = 21/89 (23%), Positives = 28/89 (31%), Gaps = 28/89 (31%)
Query: 410 LVACESLKLTHCSLSSLHVFPHLP-SLESLDVSHNAPNIILCVYFQSLKLTHCSLSSL-- 466
LV L H V L L++S N +S L
Sbjct: 4 LVDRSKNGLIH-------VPKDLSQKTTILNISQN------------------YISELWT 38
Query: 467 HVFPHLPSLESLDVSHNAIDHIEDSVFAK 495
L L L +SHN I +++ SVF
Sbjct: 39 SDILSLSKLRILIISHNRIQYLDISVFKF 67
Score = 30.2 bits (68), Expect = 2.0
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 460 HCSLSSL-HVFPHLP-SLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
S + L HV L L++S N I + S +I++ N
Sbjct: 6 DRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHN 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 59.2 bits (144), Expect = 7e-10
Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 27/136 (19%)
Query: 368 QITNLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTN---NCLRHLTPLVACESLKLTHC 421
Q+ +LS ++ +I + + L+ NP+ + L+ L + L
Sbjct: 55 QVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL---QKLVAVET 110
Query: 422 SLSSL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLD 479
+L+SL HL +L+ L+V+HN + S F +L +LE LD
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHN-------------LIQ--SFKLPEYFSNLTNLEHLD 155
Query: 480 VSHNAIDHIEDSVFAK 495
+S N I I +
Sbjct: 156 LSSNKIQSIYCTDLRV 171
Score = 43.4 bits (103), Expect = 1e-04
Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 28/174 (16%)
Query: 333 FDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQV 392
+ L L L L + + + Q L S+ + H K +
Sbjct: 72 YQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTL 126
Query: 393 ---DLSNNPLTN----NCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLE----SLD 439
++++N + + +LT L E L L+ + S++ L + SLD
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNL---EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 440 VSHNAPNIILCVYFQSLKLTHCSLSS-------LHVFPHLPSLESLDVSHNAID 486
+S N N I F+ ++L +L + +F L SL+ + + N D
Sbjct: 184 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237
Score = 37.3 bits (87), Expect = 0.009
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 454 QSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
++L L+ L L F P L+ LD+S I IED + +ILTGNP+ +
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 60.1 bits (146), Expect = 8e-10
Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 33/221 (14%)
Query: 315 LQHLHPGSSDSNEIILKRFDLLKTLDPLRLNY----------YKDSESKYKIETFIQTNP 364
LQ ++ + ++ L L+ + D+ + KI++ I +N
Sbjct: 192 LQDMNEYWLGWEKC--GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249
Query: 365 RANQITNLSSLQLTSIHHMHCF----AHCKQVDLSNNPLT---NNCLRHLTPLVACESLK 417
N ++ + + K DLS + + + H T L E L
Sbjct: 250 Y-NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL---EQLT 305
Query: 418 LTHCSLSSL--HVFPHLPSLESLDVSHNA----PNIIL--CVYFQSLKLTHCSLSSLH-- 467
L ++ + + F L L L++S N + + + L L++ + +L
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365
Query: 468 VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
F LP+L+ L + N + + D +F + + ++ L NP
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406
Score = 47.0 bits (112), Expect = 1e-05
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 17/84 (20%)
Query: 414 ESLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPH 471
+ L+ S++ L F L L+ L V P +++ + F
Sbjct: 33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI---------------RNNTFRG 77
Query: 472 LPSLESLDVSHNAIDHIEDSVFAK 495
L SL L + +N +E F
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNG 101
Score = 45.5 bits (108), Expect = 3e-05
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 20/132 (15%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
+LS ++ ++ F+H + L+ N + +N LT L L L+ L
Sbjct: 281 DLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL---LKLNLSQNFLG 336
Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYF------QSLKLTHCSLSSLH--VFPHLPS 474
S+ +F +L LE LD+S+N + F + L L L S+ +F L S
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396
Query: 475 LESLDVSHNAID 486
L+ + + N D
Sbjct: 397 LQKIWLHTNPWD 408
Score = 32.4 bits (74), Expect = 0.35
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 460 HCSLSSLHVFPHLP-SLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
C LH P LP + +D+S N+I + ++ F++ + + +
Sbjct: 16 ICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ 64
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 59.5 bits (144), Expect = 2e-09
Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 25/154 (16%)
Query: 367 NQITNLSSLQLTSIHHMH----CFAHCKQ---VDLSNNPLT-----NNCLRHLTPLVAC- 413
+ + +L+ ++L + +M + ++++ N L
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547
Query: 414 ---ESLKLTHCSLSSL---HVFPHLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSL 463
+ + + +L + L LD HN V LKL + +
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQI 607
Query: 464 SSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAK 495
+ +E L SHN + +I + AK
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641
Score = 59.1 bits (143), Expect = 2e-09
Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 26/149 (17%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS-- 425
S +L I ++ VD S N + + + + + + +LS
Sbjct: 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684
Query: 426 -----LHVFPHLPSLESLDVSHN-------------APNIILCVYFQSLKLTHCSLSSLH 467
+F + ++ +S+N N ++ L L+SL
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS 744
Query: 468 ---VFPHLPSLESLDVSHNAIDHIEDSVF 493
LP L ++DVS+N
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFSSFPTQPL 773
Score = 58.3 bits (141), Expect = 4e-09
Identities = 25/168 (14%), Positives = 48/168 (28%), Gaps = 29/168 (17%)
Query: 367 NQITNLSSLQ--------LTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACES 415
+ +Q L + +D +N + + L V
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNVKLTD 599
Query: 416 LKLTHCSLSSL--HVFPHLPSLESLDVSHN-------APNIILCVYFQSLKLTHCSLSSL 466
LKL + + + +E L SHN N S+ ++ + S
Sbjct: 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659
Query: 467 HV-------FPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
+ ++ +S+N I +FA +IL+ N
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707
Score = 56.4 bits (136), Expect = 2e-08
Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 33/152 (21%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT----------NNCLRHLTPLVACESLK 417
LS ++ FA + LSNN +T + ++ L ++
Sbjct: 679 TLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL---TTID 734
Query: 418 LTHCSLSSLH---VFPHLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCSLSS---- 465
L L+SL LP L ++DVS+N + ++ + H +
Sbjct: 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794
Query: 466 LHVFP----HLPSLESLDVSHNAIDHIEDSVF 493
L +P PSL L + N I +++ +
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT 826
Score = 34.9 bits (80), Expect = 0.083
Identities = 12/151 (7%), Positives = 37/151 (24%), Gaps = 40/151 (26%)
Query: 371 NLSSLQLTSIHH---------------------------MHCFAHCKQVDLSNNPLTNNC 403
+ + T + DL + + N
Sbjct: 353 SFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412
Query: 404 LRHLTPLVACESLKLTHCSLSSLH--------VFPHLPSLESLDVSHNA-PNIILCVYFQ 454
+ P+ + L + +L L L+ + +++ + V ++
Sbjct: 413 E--MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWE 470
Query: 455 SLKLTHCSLSSLH--VFPHLPSLESLDVSHN 483
+ + +L L +++ +
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNC 501
Score = 32.9 bits (75), Expect = 0.33
Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 17/109 (15%)
Query: 397 NPLTNNCLRHLTPLVACESL-KLTHCSLSS---LHVFP----HLPSLESLDVSHN----- 443
N + P V ++ ++T SL+ P L L+ L +
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362
Query: 444 APNIILCVYFQSLKLTHCSLSSLHVFP----HLPSLESLDVSHNAIDHI 488
+ +H + L D+ +AI+
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 57.1 bits (137), Expect = 5e-09
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 18/116 (15%)
Query: 412 ACESLKLTHCS----LSSLHVFPHLPSLESLDVSHNAPNIILCV---------YFQSLKL 458
C+ L SLH P +L L + + + + ++L +
Sbjct: 6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQ--QHLQHLELRDLRGLGELRNLTI 63
Query: 459 THCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVSAD 512
L + F P L L++S NA++ + +++L+GNP+
Sbjct: 64 VKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ-ELVLSGNPLHCS 118
Score = 51.7 bits (123), Expect = 3e-07
Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 9/105 (8%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNP----LTNNCLRHLTPLVACESLKLTHCS 422
+ + L S+HH+ + ++ + N L LR L L +L +
Sbjct: 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGEL---RNLTIVKSG 67
Query: 423 LSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSS 465
L + F P L L++S NA + Q L L LS
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 57.3 bits (138), Expect = 6e-09
Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 50/225 (22%)
Query: 294 LSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESK 353
+S+ P N S++ + + + +D + N +
Sbjct: 1 MSIMLPINNNFSLSQNSFYNTISGTYAD-------YFSAWDKWEKQALPGENRNE----- 48
Query: 354 YKIETFIQTNPRANQITNLSSL-----QLTSIHHMHCFAHCKQVDLSNNPLT-------- 400
+ + I S L L+S+ + ++++ N L
Sbjct: 49 ------AVSLLKECLINQFSELQLNRLNLSSLPD-NLPPQITVLEITQNALISLPELPAS 101
Query: 401 -------NNCLRHLTP-LVACESLKLTHCSLSSLHVFPHLP-SLESLDVSHNAPNII--L 449
+N L L + + L + + L+ L P LP LE ++ +N ++ L
Sbjct: 102 LEYLDACDNRLSTLPELPASLKHLDVDNNQLTML---PELPALLEYINADNNQLTMLPEL 158
Query: 450 CVYFQSLKLTHCSLSSLHVFPHLP-SLESLDVSHNAIDHIEDSVF 493
+ L + + L+ L P LP SLE+LDVS N ++ +
Sbjct: 159 PTSLEVLSVRNNQLTFL---PELPESLEALDVSTNLLESLPAVPV 200
Score = 43.8 bits (103), Expect = 1e-04
Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 32/142 (22%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---------------NNCLRHLTPLVAC-E 414
+ +L+++ + A K +D+ NN LT NN L L L E
Sbjct: 106 DACDNRLSTLPEL--PASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLE 163
Query: 415 SLKLTHCSLSSLHVFPHLP-SLESLDVSHNA----PNII-----LCVYFQSLKLTHCSLS 464
L + + L+ L P LP SLE+LDVS N P + + ++
Sbjct: 164 VLSVRNNQLTFL---PELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220
Query: 465 SL-HVFPHLPSLESLDVSHNAI 485
+ L ++ + N +
Sbjct: 221 HIPENILSLDPTCTIILEDNPL 242
Score = 29.9 bits (67), Expect = 2.3
Identities = 9/83 (10%), Positives = 25/83 (30%), Gaps = 17/83 (20%)
Query: 415 SLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHL 472
S + ++S + F E + N + + L C ++
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSL------LKECLINQF------ 61
Query: 473 PSLESLDVSHNAIDHIEDSVFAK 495
L ++ + + D++ +
Sbjct: 62 ---SELQLNRLNLSSLPDNLPPQ 81
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 57.0 bits (138), Expect = 7e-09
Identities = 28/126 (22%), Positives = 40/126 (31%), Gaps = 16/126 (12%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
N IT L Q T++ + +N LTN + LT L L L+ L
Sbjct: 74 NNITTLDLSQNTNL---------TYLACDSNKLTNLDVTPLTKL---TYLNCDTNKLTKL 121
Query: 427 HVFPHLPSLESLDVSHNAPNII---LCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHN 483
P L L+ + N I L + L +LD S N
Sbjct: 122 D-VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180
Query: 484 AIDHIE 489
I ++
Sbjct: 181 KITELD 186
Score = 52.8 bits (127), Expect = 2e-07
Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 15/142 (10%)
Query: 367 NQITNLSSLQLTSIHHMHC-FAHCKQVDLSNNP------LTNNCLRHLTPLVACESLK-- 417
N++T L Q + +++C ++D+S+N N + L
Sbjct: 116 NKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175
Query: 418 -LTHCSLSSLHVFPHLPSLESLDVSHN---APNIILCVYFQSLKLTHCSLSSLHVFPHLP 473
+ ++ L L L+ N ++ + L + L+ + L
Sbjct: 176 DCSFNKITELD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-VTPLT 233
Query: 474 SLESLDVSHNAIDHIEDSVFAK 495
L D S N + ++ S +K
Sbjct: 234 QLTYFDCSVNPLTELDVSTLSK 255
Score = 50.5 bits (121), Expect = 9e-07
Identities = 15/134 (11%), Positives = 35/134 (26%), Gaps = 23/134 (17%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
+ + T + + + + H T L L ++ L
Sbjct: 264 TDLLEIDLTHNTQLIYFQA--------EGCRKIKELDVTHNTQL---YLLDCQAAGITEL 312
Query: 427 HVFPHLPSLESLDVSHN-------APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLD 479
P L L +++ + N L +SL + + +P+L +
Sbjct: 313 -DLSQNPKLVYLYLNNTELTELDVSHNTKL----KSLSCVNAHIQDFSSVGKIPALNNNF 367
Query: 480 VSHNAIDHIEDSVF 493
+ +
Sbjct: 368 EAEGQTITMPKETL 381
Score = 49.7 bits (119), Expect = 1e-06
Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 7/109 (6%)
Query: 386 FAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHN-- 443
FA L L SL + S++ + L L L + N
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATL---TSLDCHNSSITDMTGIEKLTGLTKLICTSNNI 76
Query: 444 -APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDS 491
++ L L++L L L L+ N + ++ S
Sbjct: 77 TTLDLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLDVS 124
Score = 43.9 bits (104), Expect = 1e-04
Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 23/125 (18%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
IT L Q + + L+N LT + H T L +SL + +
Sbjct: 307 AGITELDLSQNPKL---------VYLYLNNTELTELDVSHNTKL---KSLSCVNAHIQDF 354
Query: 427 HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
+P+L + + + + LT S + LD N ++
Sbjct: 355 SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIA-----------VSPDLLDQFGNPMN 403
Query: 487 HIEDS 491
Sbjct: 404 IEPGD 408
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 57.4 bits (139), Expect = 7e-09
Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 33/152 (21%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT----------NNCLRHLTPLVACESLK 417
NLS+ Q++ F+ ++L N LT N ++ L S+
Sbjct: 439 NLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL---TSID 494
Query: 418 LTHCSLSSL---HVFPHLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCSLSS---- 465
L L+ L LP L +D+S+N+ + + + + +
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554
Query: 466 LHVFP----HLPSLESLDVSHNAIDHIEDSVF 493
L +P PSL L + N I + + +
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRKVNEKIT 586
Score = 52.4 bits (126), Expect = 3e-07
Identities = 22/227 (9%), Positives = 56/227 (24%), Gaps = 46/227 (20%)
Query: 294 LSLSCPYRNYISVALLTSI-------TLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNY 346
L+L + V + + + D L +
Sbjct: 110 LALG---SHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD-LIKDC 165
Query: 347 YKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT--- 400
+ I+ + + QI S +T + + + N+P
Sbjct: 166 INSDPQQKSIKKSSRITLKDTQI-GQLSNNITFVSK--AVMRLTKLRQFYMGNSPFVAEN 222
Query: 401 ------------NNCLRHLTP----LVACESLKLTHCSLSSL--HVFPHLPSLESLDVSH 442
+ L +++ +C + LP ++ ++V+
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282
Query: 443 NAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
N S + +L P ++ + + +N +
Sbjct: 283 N--------RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321
Score = 50.8 bits (122), Expect = 7e-07
Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 37/157 (23%)
Query: 369 ITNLSSL--------QLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACE 414
+ + L QL + F + ++L+ N +T N + E
Sbjct: 326 LQKMKKLGMLECLYNQLEGK--LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQV---E 380
Query: 415 SLKLTHCSLSSL---HVFPHLPSLESLDVSHNA-------------PNIILCVYFQSLKL 458
+L H L + + + ++D S+N P + S+ L
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440
Query: 459 THCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVF 493
++ +S +F L S+++ N + I +
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477
Score = 32.7 bits (75), Expect = 0.29
Identities = 15/109 (13%), Positives = 26/109 (23%), Gaps = 23/109 (21%)
Query: 397 NPLTNNCLRHLTPLVAC------ESLKLTHCSLSSLHVFP----HLPSLESLDVSHNA-- 444
N + P V+ L L S P L LE L + +
Sbjct: 61 NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASG--RVPDAIGQLTELEVLALGSHGEK 118
Query: 445 --------PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI 485
I + + + + P + D+ + I
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKT-FVDYDPREDFSDLIKDCI 166
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 53.9 bits (130), Expect = 1e-08
Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 9/143 (6%)
Query: 379 SIHHMHCFAHCKQVDLSN--NPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLE 436
++V+L P+ L+ L AC+ L L+ ++ + + +L
Sbjct: 15 EERKSVVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKISSLSGMENLR 73
Query: 437 SLDVSHNAPNII-----LCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIED- 490
L + N I + + L +++ ++SL L +L L +S+N I + +
Sbjct: 74 ILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEI 133
Query: 491 SVFAKYEACVQVILTGNPVSADM 513
A + ++L GNP+ D
Sbjct: 134 DKLAALDKLEDLLLAGNPLYNDY 156
Score = 30.0 bits (68), Expect = 1.4
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 27/109 (24%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
+S Q+ S+ + + + + +SNN +TN +
Sbjct: 99 WISYNQIASLSGIEKLVNLRVLYMSNNKITN---------------------WGEIDKLA 137
Query: 431 HLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLD 479
L LE L ++ N +Y + S + V LP+L+ LD
Sbjct: 138 ALDKLEDLLLAGN------PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 53.1 bits (128), Expect = 2e-08
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 416 LKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII-----LCVYFQSLKLTHCSLSSLHVFP 470
+KLT + + + LD+ +I F ++ + + L FP
Sbjct: 2 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 61
Query: 471 HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPVS 510
L L++L V++N I I + + ++ILT N +
Sbjct: 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101
Score = 52.4 bits (126), Expect = 4e-08
Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 22/143 (15%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT--NNCLRHLTPLVACESLKLTHCSLSSLHV 428
L++ + +++DL + N L +++ + + L
Sbjct: 3 KLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQF---DAIDFSDNEIRKLDG 59
Query: 429 FPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHI 488
FP L L++L V++N I + LP L L +++N++ +
Sbjct: 60 FPLLRRLKTLLVNNNRICRI----------------GEGLDQALPDLTELILTNNSLVEL 103
Query: 489 ED-SVFAKYEACVQVILTGNPVS 510
D A ++ + + NPV+
Sbjct: 104 GDLDPLASLKSLTYLCILRNPVT 126
Score = 43.9 bits (104), Expect = 3e-05
Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 17/124 (13%)
Query: 371 NLSSLQLTSIHHM-HCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL--H 427
+L ++ I ++ +D S+N + L L ++L + + + +
Sbjct: 25 DLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLVNNNRICRIGEG 82
Query: 428 VFPHLPSLESLDVSHNAPNIILCV-YFQSLK-LTHCSLSS----------LHVFPHLPSL 475
+ LP L L +++N+ + + SLK LT+ + L+V +P +
Sbjct: 83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV 142
Query: 476 ESLD 479
LD
Sbjct: 143 RVLD 146
Score = 32.3 bits (74), Expect = 0.21
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 16/83 (19%)
Query: 365 RANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLK---LTHC 421
N+I + ++ + L+NN L L L PL + +SL +
Sbjct: 72 NNNRICRIGEGLDQALPDLTEL------ILTNNSLVE--LGDLDPLASLKSLTYLCILRN 123
Query: 422 SLSS-----LHVFPHLPSLESLD 439
+++ L+V +P + LD
Sbjct: 124 PVTNKKHYRLYVIYKVPQVRVLD 146
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 55.0 bits (133), Expect = 3e-08
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 30/123 (24%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLV-ACESLKLTHCSLSSLH------VFPHLPSLESLDVSH 442
+ +D+ L++ L PL+ C+ ++L C L+ P+L L++
Sbjct: 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 65
Query: 443 NAPN----IILCVYFQSLKLTHCSLSSL----------------HVFPHLPSLESLDVSH 482
N + Q L+ C + L LP+L+ L +S
Sbjct: 66 NELGDVGVHCVL---QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 483 NAI 485
N +
Sbjct: 123 NLL 125
Score = 49.6 bits (119), Expect = 2e-06
Identities = 37/200 (18%), Positives = 51/200 (25%), Gaps = 64/200 (32%)
Query: 336 LKTLDPLRLNYYKDSESKYKIETFIQTNP-------RANQITNLSSLQLTSIHHMHCFAH 388
L+ L L N D + + IT L
Sbjct: 229 LRELA-LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR-----VLRA 282
Query: 389 CKQV---DLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH----------------VF 429
+ + L+ N L + R L CE+L C L SL V
Sbjct: 283 KESLKELSLAGNELGDEGARLL-----CETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337
Query: 430 PHLPSLESLDVSHNAPNI------ILCVYFQSLKLTHCSLSSLH---------------- 467
L L +S+N + LC Q L L L
Sbjct: 338 AQNRFLLELQISNN--RLEDAGVRELC---QGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392
Query: 468 VFPHLPSLESLDVSHNAIDH 487
SL LD+S+N +
Sbjct: 393 TLLANHSLRELDLSNNCLGD 412
Score = 48.4 bits (116), Expect = 3e-06
Identities = 34/158 (21%), Positives = 48/158 (30%), Gaps = 52/158 (32%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTNNCLRHLTPLVACESLKLTHCSL 423
+T L+S + LS+N L + L+ L CE L C L
Sbjct: 95 CCLTGAGCGVLSST-----LRTLPTLQELHLSDNLLGDAGLQLL-----CEGLLDPQCRL 144
Query: 424 SSLH----------------VFPHLPSLESLDVSHNAPN----IILCVYFQSLKLTHCSL 463
L V P + L VS+N N +LC Q LK + C L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC---QGLKDSPCQL 201
Query: 464 SSLH----------------VFPHLPSLESLDVSHNAI 485
+L + SL L + N +
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239
Score = 47.3 bits (113), Expect = 7e-06
Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 38/128 (29%)
Query: 393 DLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL----------------HVFPHLPSLE 436
+L +N L + + + + L+ C + L LP+L+
Sbjct: 62 NLRSNELGDVGVHCV-----LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116
Query: 437 SLDVSHNAPN----IILCVYF-------QSLKLTHCSLSSL------HVFPHLPSLESLD 479
L +S N +LC + L+L +CSLS+ V P + L
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176
Query: 480 VSHNAIDH 487
VS+N I+
Sbjct: 177 VSNNDINE 184
Score = 35.7 bits (83), Expect = 0.038
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 13/65 (20%)
Query: 434 SLESLDVSHN----APNIILCVYF---QSLKLTHCSLSSLH------VFPHLPSLESLDV 480
++SLD+ A L Q ++L C L+ P+L L++
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 481 SHNAI 485
N +
Sbjct: 64 RSNEL 68
Score = 29.2 bits (66), Expect = 3.6
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 17/77 (22%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL 449
+++DLSNN L + + L ES++ C L E L + + +
Sbjct: 401 RELDLSNNCLGDAGILQL-----VESVRQPGCLL------------EQLVLYDIYWSEEM 443
Query: 450 CVYFQSLKLTHCSLSSL 466
Q+L+ SL +
Sbjct: 444 EDRLQALEKDKPSLRVI 460
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 53.7 bits (129), Expect = 5e-08
Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 44/215 (20%)
Query: 315 LQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSS 374
L++L + ++ L L+ +++ +++ +++ + I S
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161
Query: 375 LQLTSIHHMHCFAHCKQVDLSNNPLTNN-------CLRHLTPLVACESLKLTHCSLSSL- 426
L S + F +DLS+NP C L + L L + + +
Sbjct: 162 LNF-SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL---QVLALRNAGMETPS 217
Query: 427 ----HVFPHLPSLESLDVSHN----APNIILCVYFQSLK--------------------- 457
+ L+ LD+SHN A C + L
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS 277
Query: 458 ---LTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
L++ L LP + +L + N E
Sbjct: 278 VLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDSE 312
Score = 36.4 bits (84), Expect = 0.019
Identities = 18/135 (13%), Positives = 43/135 (31%), Gaps = 19/135 (14%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVAC---ESLKLTHCSLSSLHVFP----HLPSLESLDVSH 442
K++ + + + L ++ + L L + ++ P P L L++ +
Sbjct: 71 KRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130
Query: 443 NAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQV 502
S L+ L + P L+ L ++ + + A +
Sbjct: 131 V-----------SWATRDAWLAELQQWLK-PGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178
Query: 503 ILTGNPVSADMVVKH 517
L+ NP + +
Sbjct: 179 DLSDNPELGERGLIS 193
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 54.5 bits (131), Expect = 6e-08
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSL-H 427
N+ LT++ AH + + +N LT+ L +L+++ L+SL
Sbjct: 46 NVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPALPPELR------TLEVSGNQLTSLPV 98
Query: 428 VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDH 487
+ P L L + L + L+SL P L+ L VS N +
Sbjct: 99 LPPGLLELSIFSNPLTHLPALPS-GLCKLWIFGNQLTSLP--VLPPGLQELSVSDNQLAS 155
Query: 488 I 488
+
Sbjct: 156 L 156
Score = 52.2 bits (125), Expect = 3e-07
Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 31/151 (20%)
Query: 367 NQITNLSSL-----QLTSIHHMHCFAHCKQVDLSNNPLT---------------NNCLRH 406
L L QL S+ + + ++ NN LT +N L
Sbjct: 138 VLPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS 195
Query: 407 LTPLVAC-ESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII--LCVYFQSLKLTHCSL 463
L L + L + L+SL L+ L VS N + L + L ++ L
Sbjct: 196 LPTLPSELYKLWAYNNRLTSLP--ALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRL 253
Query: 464 SSLHVFPHLP-SLESLDVSHNAIDHIEDSVF 493
+SL P LP L SL V N + + +S+
Sbjct: 254 TSL---PMLPSGLLSLSVYRNQLTRLPESLI 281
Score = 45.7 bits (108), Expect = 3e-05
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 31/138 (22%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---------------NNCLRHLTPLVAC-E 414
+ QLTS+ + +++ +S+N L NN L L L + +
Sbjct: 167 WAYNNQLTSL--PMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLK 224
Query: 415 SLKLTHCSLSSLHVFPHLPSLESLDVSHNA----PNII--LCVYFQSLKLTHCSLSSL-H 467
L ++ L+SL L+ L VS N P + L SL + L+ L
Sbjct: 225 ELIVSGNRLTSL--PVLPSELKELMVSGNRLTSLPMLPSGL----LSLSVYRNQLTRLPE 278
Query: 468 VFPHLPSLESLDVSHNAI 485
HL S ++++ N +
Sbjct: 279 SLIHLSSETTVNLEGNPL 296
Score = 44.9 bits (106), Expect = 5e-05
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 21/107 (19%)
Query: 393 DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNA----- 444
++ + LT H+T +L + +L+SL P L +L+VS N
Sbjct: 46 NVGESGLTTLPDCLPAHIT------TLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSLP 97
Query: 445 PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDS 491
+ L +L L L + N + +
Sbjct: 98 VLPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLTSLPVL 139
Score = 33.7 bits (77), Expect = 0.16
Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 27/125 (21%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---------------NNCLRHLTPLV 411
N++T+L +L + + K++ +S N LT N L L L
Sbjct: 211 NRLTSLPAL-PSGL---------KELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLP 260
Query: 412 A-CESLKLTHCSLSSL-HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVF 469
+ SL + L+ L HL S ++++ N + + + + F
Sbjct: 261 SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRF 320
Query: 470 PHLPS 474
+
Sbjct: 321 DMAGA 325
Score = 33.7 bits (77), Expect = 0.17
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 434 SLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHI 488
L+V + P+ + + +L + +L+SL P L +L+VS N + +
Sbjct: 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSL 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 1e-07
Identities = 93/528 (17%), Positives = 174/528 (32%), Gaps = 142/528 (26%)
Query: 24 YHNLMETIFEKRKNQ-EYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELH 82
+H+ M+ FE ++Q +Y D + N D K+V K+ L++EE+
Sbjct: 3 HHHHMD--FETGEHQYQYKDILSVFEDAFVDNF-DC-------KDVQDMPKSILSKEEID 52
Query: 83 ELV---DRELKLTK--DCLLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDE 137
++ D + LL++ + Q+ +V + + NY+ + E +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEM---VQK-FVEEVL--RINYKFLMS--PIKTEQRQ 104
Query: 138 RNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHL- 196
+ R Y+ R ++ Y+ ++ F+ Y+ R + L L
Sbjct: 105 PSM---MTRMYIEQRDRL-------YNDNQV---FAKYNVS--RLQPYLKL----RQALL 145
Query: 197 PIEQDKYVNEFSM--------VESAVFTEPKDQSAWFYQRWL-LGERTSPVQIISAGVLP 247
+ K V + + F WL L SP ++
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM---- 201
Query: 248 SGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVA 307
+D TS+ SN+ + S+ R + + PY N
Sbjct: 202 ----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-------PYEN----C 246
Query: 308 LLTSITLLQHLHPGSSDSNEIILKRFDLL-KTL---------DPLRLNYYKDSESKYKIE 357
LL +L ++ ++ F+L K L D L +
Sbjct: 247 LL----VLLNV----QNAK--AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 358 TF----------------IQTNPRANQITNLSSLQLTSI-----HHMHCFAHCKQVDLSN 396
T Q PR ++ + +L+ I + + + K V+
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVN--C 352
Query: 397 NPLTN---NCLRHLTPLVACESLKLTHCSLSSLHVFP---HLPS--LESL--DVSHNAPN 446
+ LT + L L P E K+ L VFP H+P+ L + DV +
Sbjct: 353 DKLTTIIESSLNVLEPA---EYRKM----FDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 447 IILCVYFQ-SL-----KLTHCSLSSLHVFPHLPSLESLDVSHNA-IDH 487
+++ + SL K + S+ S++ LE+ H + +DH
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIY-LELKVKLENEYALHRSIVDH 452
Score = 41.0 bits (95), Expect = 0.001
Identities = 78/528 (14%), Positives = 136/528 (25%), Gaps = 194/528 (36%)
Query: 5 KKESVSVQEAKKRSAKVKWYHN-LMETIFEKRKNQEYDD-------EALSLTSEVL---R 53
K S+Q +R K K Y N L+ + + A +L+ ++L R
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLL--VL--------LNVQNAKAWNAFNLSCKILLTTR 273
Query: 54 NIPDINSL--WNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCY 111
+ L L H TL +E+ L+ + L L P+ +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PR------EVL- 323
Query: 112 VLDHISRAPNYEKELELCNYYLELDERNFHC-WD-YRRYVTDRHKVAPLKELNYSTEKIE 169
+ P L + R+ WD ++ D+ T IE
Sbjct: 324 -----TTNP-----RRLSIIAESI--RDGLATWDNWKHVNCDKL-----------TTIIE 360
Query: 170 ANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRW 229
++ + L P E K + +VF P
Sbjct: 361 SSLNV-------------LEPA-------EYRKMFDRL-----SVF--PPS--------- 384
Query: 230 LLGERTSPVQIISAGVL----PSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASR 285
I +L + + L S ++ S S+
Sbjct: 385 --------AH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK--ESTISIPS--- 430
Query: 286 SFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLN 345
L L N LH I+ +++ KT D L
Sbjct: 431 ------IYLELKVKLEN------------EYALH-------RSIVDHYNIPKTFDSDDLI 465
Query: 346 YYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLR 405
+Y + I HH+ H +++ L + R
Sbjct: 466 --PPYLDQY-FYSHIG-------------------HHLKNIEHPERMTLFRMVFLD--FR 501
Query: 406 HLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSS 465
L K+ H S + L +L+ L Y
Sbjct: 502 FL-------EQKIRHDSTAWNASGSILNTLQQLK-----------FYKP----------- 532
Query: 466 LHVFPHLPSLESL--DVSHNAIDHIEDSVFAKYEACVQVILTGNPVSA 511
++ + P E L + E+ + +KY +++ L A
Sbjct: 533 -YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM-AEDEA 578
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 51.2 bits (123), Expect = 2e-07
Identities = 29/134 (21%), Positives = 44/134 (32%), Gaps = 26/134 (19%)
Query: 393 DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHN---- 443
L N + L + L++ +S L F L SL SL + N
Sbjct: 38 RLEQNTIKVIPPGAFSPYKKL---RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 444 -APNIILCVYFQSL-KLTHCSLS-----SLH--VFPHLPSLESLDVSHNAIDHIEDSVFA 494
++ F+ L L L+ L F L +L L + N + I F+
Sbjct: 95 LPKSL-----FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149
Query: 495 KYEACVQVILTGNP 508
A + L NP
Sbjct: 150 PLRAIQTMHLAQNP 163
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 49.7 bits (119), Expect = 2e-07
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 390 KQVDLSNNPLTNNCLRHLT-PLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII 448
K++ L N+ L LT E L + L+S+ P L L+ L++S N +
Sbjct: 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG 79
Query: 449 L------CVYFQSLKLTH---CSLSSLHVFPHLPSLESLDVSHNAIDHIED 490
L C L L+ LS++ L +L+SLD+ + + ++ D
Sbjct: 80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130
Score = 45.4 bits (108), Expect = 5e-06
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 434 SLESLDVSHNAPNII-------LCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
++ L + ++ N + L + L+S+ P L L+ L++S N +
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVS 77
Query: 487 HIEDSVFAKYEACVQVILTGN 507
+ + K + L+GN
Sbjct: 78 GGLEVLAEKCPNLTHLNLSGN 98
Score = 44.7 bits (106), Expect = 8e-06
Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 22/156 (14%)
Query: 327 EIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCF 386
E+ + +K L L + + + + + F + + + ++ LTSI ++
Sbjct: 10 ELRNRTPSDVKELV-LDNSRSNEGKLEGLTDEFEEL-----EFLSTINVGLTSIANLPKL 63
Query: 387 AHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTH---CSLSSLHVFPHLPSLESLDVSHN 443
K+++LS+N ++ L L+ LS++ L +L+SLD+ +
Sbjct: 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Query: 444 APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLD 479
+T+ + +VF LP L LD
Sbjct: 124 -E------------VTNLNDYRENVFKLLPQLTYLD 146
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 49.7 bits (119), Expect = 2e-07
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 390 KQVDLSNNPLTNNCLRHLT-PLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNII 448
+++ L N + + LT V E L L + L S+ P LP L+ L++S N
Sbjct: 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG 86
Query: 449 L------CVYFQSLKLTH---CSLSSLHVFPHLPSLESLDVSHNAIDHIED 490
L L L+ +S+L L L+SLD+ + + ++ D
Sbjct: 87 LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137
Score = 45.1 bits (107), Expect = 8e-06
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 432 LPSLESLDVSHNAPNII-------LCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484
++ L + + N V + L L + L S+ P LP L+ L++S N
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR 82
Query: 485 IDHIEDSVFAKYEACVQVILTGN 507
I D + K + L+GN
Sbjct: 83 IFGGLDMLAEKLPNLTHLNLSGN 105
Score = 42.8 bits (101), Expect = 6e-05
Identities = 30/157 (19%), Positives = 58/157 (36%), Gaps = 22/157 (14%)
Query: 326 NEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHC 385
E+ + ++ L L D + + F+ + +L ++ L S+ ++
Sbjct: 16 LELRNRTPAAVRELV-LDNCKSNDGKIEGLTAEFVNL-----EFLSLINVGLISVSNLPK 69
Query: 386 FAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTH---CSLSSLHVFPHLPSLESLDVSH 442
K+++LS N + L L L+ +S+L L L+SLD+ +
Sbjct: 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129
Query: 443 NAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLD 479
++T+ + VF LP L LD
Sbjct: 130 C-------------EVTNLNDYRESVFKLLPQLTYLD 153
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 51.1 bits (123), Expect = 7e-07
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 25/124 (20%)
Query: 371 NLSSLQLT-SIHHMHCFAHCKQVDLSNNPLT-----NNCLRHLTPLVACESLKLTHCSLS 424
LS+ + S+ C A +DLS N L+ L + L + L ++ +L
Sbjct: 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL---KFLNVSSNTLD 139
Query: 425 ---SLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
+ L SLE LD+S N ++ ++ + L+ L +S
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSAN-------------SISGANVVGWVLSDGCGELKHLAIS 186
Query: 482 HNAI 485
N I
Sbjct: 187 GNKI 190
Score = 50.7 bits (122), Expect = 9e-07
Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 29/147 (19%)
Query: 364 PRANQITNLSSLQ--------LTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVA 412
+ + S L+ L + +DLS N ++ +
Sbjct: 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176
Query: 413 CESLK---LTHCSLSSLHVFP--HLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCS 462
C LK ++ +S +LE LDVS N P + C Q L ++
Sbjct: 177 CGELKHLAISGNKISG--DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 234
Query: 463 LSSLHVFP----HLPSLESLDVSHNAI 485
LS F L+ L++S N
Sbjct: 235 LSG--DFSRAISTCTELKLLNISSNQF 259
Score = 41.8 bits (99), Expect = 5e-04
Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 36/133 (27%)
Query: 369 ITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT----NNCLRHLTPLVACESLKLTHCSLS 424
I+ + L+ +++S+N L+ L + L L +
Sbjct: 243 ISTCTELK--------------LLNISSNQFVGPIPPLPLKSL------QYLSLAENKFT 282
Query: 425 ---SLHVFPHLPSLESLDVSHNA------PNIILCVYFQSLKLTHCSLS---SLHVFPHL 472
+ +L LD+S N P C +SL L+ + S + +
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 473 PSLESLDVSHNAI 485
L+ LD+S N
Sbjct: 343 RGLKVLDLSFNEF 355
Score = 41.4 bits (98), Expect = 6e-04
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 19/95 (20%)
Query: 411 VAC-----ESLKLTHCSLS-SLHVFP----HLPSLESLDVSHNA-----PNIILCVYFQS 455
V C S+ L+ L+ L LESL +S++ S
Sbjct: 45 VTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTS 104
Query: 456 LKLTHCSLS----SLHVFPHLPSLESLDVSHNAID 486
L L+ SLS +L L+ L+VS N +D
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139
Score = 38.4 bits (90), Expect = 0.006
Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 34/130 (26%)
Query: 369 ITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS- 424
++N S L + LS N L+ + L L+ L LKL L
Sbjct: 414 LSNCSELV--------------SLHLSFNYLSGTIPSSLGSLSKL---RDLKLWLNMLEG 456
Query: 425 SL-HVFPHLPSLESLDVSHNA------PNIILCVYFQSLKLTHCSLSSLHVFPH----LP 473
+ ++ +LE+L + N + C + L++ L+ P L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG--EIPKWIGRLE 514
Query: 474 SLESLDVSHN 483
+L L +S+N
Sbjct: 515 NLAILKLSNN 524
Score = 36.0 bits (84), Expect = 0.029
Identities = 15/138 (10%), Positives = 37/138 (26%), Gaps = 20/138 (14%)
Query: 367 NQITNLSSLQLTSIHHMH-------CFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLT 419
++ + SL ++ ++ N + ++ +
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG-KIAANFIAGKRYVYIKNDGMKKECHGA 590
Query: 420 HCSLSSLHVFP----HLPSLESLDVSHNA------PNIILCVYFQSLKLTHCSLSSL--H 467
L + L + +++ P L +++ LS
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
Query: 468 VFPHLPSLESLDVSHNAI 485
+P L L++ HN I
Sbjct: 651 EIGSMPYLFILNLGHNDI 668
Score = 36.0 bits (84), Expect = 0.031
Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 40/135 (29%)
Query: 367 NQITNLSSLQLTSIHH-------MHCFAHCKQV---DLSNNPLTNNCLRHLTPLVACESL 416
Q+ LS+ +I F + + D+S N L+ + + + L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661
Query: 417 KLTHCSLS-----SLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLT---HCSLSSLHV 468
L H +S L L LD+S N KL ++S+L
Sbjct: 662 NLGHNDISGSIPDE---VGDLRGLNILDLSSN-------------KLDGRIPQAMSALT- 704
Query: 469 FPHLPSLESLDVSHN 483
L +D+S+N
Sbjct: 705 -----MLTEIDLSNN 714
Score = 30.6 bits (70), Expect = 1.4
Identities = 23/176 (13%), Positives = 48/176 (27%), Gaps = 65/176 (36%)
Query: 366 ANQITNLSSLQLTSIHH-----------MHCFAHCKQVDLSNNPLT--------NNCLRH 406
+ + + L++ + + A +DLS+N + N
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 407 LTPLVACESLKLTH-----------CSLSSLHV---------------FPHLPSLESLDV 440
L + L L + + S L L L L +
Sbjct: 396 L------QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 441 SHNA------PNIILCVYFQSLKLTHCSLS-----SLHVFPHLPSLESLDVSHNAI 485
N ++ ++L L L+ L + +L + +S+N +
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS---NCTNLNWISLSNNRL 502
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 49.8 bits (119), Expect = 1e-06
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 29/150 (19%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSL 423
N++ ++T I + ++ L L E ++++ +
Sbjct: 11 NRVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDL---EKIEISQNDV 66
Query: 424 SSL---HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESL 478
+ VF +LP L + + +L ++ F +LP+L+ L
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKA-----------------NNLLYINPEAFQNLPNLQYL 109
Query: 479 DVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
+S+ I H+ D V + + N
Sbjct: 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139
Score = 46.0 bits (109), Expect = 2e-05
Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 32/121 (26%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLS 424
L+ + IH+ F + NN L N+ + L ++ +
Sbjct: 160 WLNKNGIQEIHN-SAFNGTQLDELNLSDNNNLEELPNDVFHGASGP---VILDISRTRIH 215
Query: 425 SL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
SL + +L L + + L L L +L +++
Sbjct: 216 SLPSYGLENLKKLRARSTYN--------------------LKKLPTLEKLVALMEASLTY 255
Query: 483 N 483
Sbjct: 256 P 256
Score = 44.8 bits (106), Expect = 4e-05
Identities = 26/190 (13%), Positives = 44/190 (23%), Gaps = 66/190 (34%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLT---------------------NNCLRH 406
+L I F+ + ++S N + N L +
Sbjct: 36 RFVLTKLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94
Query: 407 LTP-----LVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA------PNII--LCV 451
+ P L + L +++ + L H LD+ N N L
Sbjct: 95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154
Query: 452 YFQSLKLTHCSLSSLH--------------------------VFPHLPSLESLDVSHNAI 485
L L + +H VF LD+S I
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214
Query: 486 DHIEDSVFAK 495
+
Sbjct: 215 HSLPSYGLEN 224
Score = 36.7 bits (85), Expect = 0.015
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 14/80 (17%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSL 423
N + L + +D+S + + L +L L A + +L
Sbjct: 188 NNLEELPNDVFHGASGPV------ILDISRTRIHSLPSYGLENLKKLRA-----RSTYNL 236
Query: 424 SSLHVFPHLPSLESLDVSHN 443
L L +L +++
Sbjct: 237 KKLPTLEKLVALMEASLTYP 256
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 48.5 bits (116), Expect = 1e-06
Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 31/148 (20%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQV---DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLS 424
L++ + T + F Q+ + SNN +T+ + + + LT L
Sbjct: 38 RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV---NEILLTSNRLE 94
Query: 425 SLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDV 480
++ +F L SL++L + N ++ + F L S+ L +
Sbjct: 95 NVQHKMFKGLESLKTLMLRSN------------------RITCVGNDSFIGLSSVRLLSL 136
Query: 481 SHNAIDHIEDSVFAKYEACVQVILTGNP 508
N I + F + + L NP
Sbjct: 137 YDNQITTVAPGAFDTLHSLSTLNLLANP 164
Score = 44.6 bits (106), Expect = 3e-05
Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 30/131 (22%)
Query: 373 SSLQLTSIHHMHCFAHCKQVDLSNNPLT----NNCLRHLTPLVACESLKLTHCSLSSLH- 427
S+ +L I H + ++ L+NN T + L L + ++ ++ +
Sbjct: 19 SNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQL---RKINFSNNKITDIEE 74
Query: 428 -VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNA 484
F + + ++ N L ++ +F L SL++L + N
Sbjct: 75 GAFEGASGVNEILLTSN------------------RLENVQHKMFKGLESLKTLMLRSNR 116
Query: 485 IDHIEDSVFAK 495
I + + F
Sbjct: 117 ITCVGNDSFIG 127
Score = 35.0 bits (81), Expect = 0.031
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 454 QSLKLTHCSLSSLH---VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
L+L + + L +F LP L ++ S+N I IE+ F +++LT N
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 48.1 bits (115), Expect = 2e-06
Identities = 14/112 (12%), Positives = 36/112 (32%), Gaps = 28/112 (25%)
Query: 390 KQVDLSNNPLTN---NCLRHLTPLVACESLKLTH-CSLSSL--HVFPHLPSLESLDVSHN 443
+ + L L + +L + + ++ +L L H F +L + +++ +
Sbjct: 34 QTLKLIETHLRTIPSHAFSNLPNI---SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 444 APNIILCVYFQSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVF 493
+L+ + LP L+ L + + + D
Sbjct: 91 -----------------RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125
Score = 42.7 bits (101), Expect = 1e-04
Identities = 19/137 (13%), Positives = 46/137 (33%), Gaps = 32/137 (23%)
Query: 371 NLSSLQLTSIHHMHCFAHC---KQVDLSNNP----LTNNCLRHLTPLVACESLKLTHCSL 423
+ + L + +++++NP + N + L +LKL +
Sbjct: 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET--LTLKLYNNGF 168
Query: 424 SSL--HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLH--VFPHLPS-LESL 478
+S+ + F + L+++ ++ N L+ + F + S L
Sbjct: 169 TSVQGYAF-NGTKLDAVYLNKN-----------------KYLTVIDKDAFGGVYSGPSLL 210
Query: 479 DVSHNAIDHIEDSVFAK 495
DVS ++ +
Sbjct: 211 DVSQTSVTALPSKGLEH 227
Score = 42.3 bits (100), Expect = 1e-04
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 413 CESLKLTHCSLSSLHVFPHLP-SLESLDVSHNAPNIILCVYFQSL-KLTH------CSLS 464
C + + + P LP S ++L + I F +L ++ +L
Sbjct: 10 CHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69
Query: 465 SL--HVFPHLPSLESLDVSHN-AIDHIEDSVFAK 495
L H F +L + +++ + + +I+ +
Sbjct: 70 QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103
Score = 31.9 bits (73), Expect = 0.35
Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 460 HCSLSSLHVFPHLP-SLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
+ + P LP S ++L + + I F+ ++ ++ +
Sbjct: 17 RVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 47.2 bits (113), Expect = 6e-06
Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 34/145 (23%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLS 424
+ + + + ++ +L + PL + L+ L + + + L
Sbjct: 73 DLLEDATQPGRVAL------------ELRSVPLPQFPDQAFRLSHL---QHMTIDAAGLM 117
Query: 425 SL-HVFPHLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCS-----------LSSLH 467
L LE+L ++ N +I + L + C +
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 468 VFPHLPSLESLDVSHNAIDHIEDSV 492
L +L+SL + I + S+
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASI 202
Score = 39.2 bits (92), Expect = 0.002
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 18/104 (17%)
Query: 393 DLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSL-HVFPHLPSLESLDVSHNA----- 444
L + + + +L L +SLK+ + LS+L HLP LE LD+
Sbjct: 189 RLEWTGIRSLPASIANLQNL---KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245
Query: 445 PNII-LCVYFQSLKLTHCSLSSLHVFP----HLPSLESLDVSHN 483
P I + L L C S+L P L LE LD+
Sbjct: 246 PPIFGGRAPLKRLILKDC--SNLLTLPLDIHRLTQLEKLDLRGC 287
Score = 36.8 bits (86), Expect = 0.014
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 23/114 (20%)
Query: 393 DLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSLHVFP----HLPSLESLDVSHNA-- 444
+ N+PL+ + HL L E L L C+ +L +P L+ L + +
Sbjct: 212 KIRNSPLSALGPAIHHLPKL---EELDLRGCT--ALRNYPPIFGGRAPLKRLILKDCSNL 266
Query: 445 ----PNIILCVYFQSLKLTHCSLSSLHVFP----HLPSLESLDVSHNAIDHIED 490
+I + L L C +L P LP+ + V + ++
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCV--NLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318
Score = 29.1 bits (66), Expect = 3.4
Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 12/98 (12%)
Query: 404 LRHLTPLVACESLKLTHCS-LSSLH-VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHC 461
H + E+L + L H V + D + + ++
Sbjct: 8 HHHSSGR---ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-NSNNPQIETR 63
Query: 462 SLSSLHVFP------HLPSLESLDVSHNAIDHIEDSVF 493
+ +L P +L++ + D F
Sbjct: 64 TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAF 101
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 45.1 bits (108), Expect = 7e-06
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 12/109 (11%)
Query: 393 DLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSL-HVFPHLPSLESLDVSHNA----- 444
LT + L L+ + L+ L LP L +
Sbjct: 10 QEIYQELTRLKAAVGELPEK---SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLK 66
Query: 445 PNIILCVYFQSLKLTHCSLSSL-HVFPHLPSLESLDVSHNAIDHIEDSV 492
+ L+ + L+ L LP L + + ++ +V
Sbjct: 67 AAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAV 115
Score = 44.8 bits (107), Expect = 1e-05
Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 19/135 (14%)
Query: 371 NLSSLQLTSI-HHMHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSL- 426
+LT + + ++ LT + L L+ + L+ L
Sbjct: 10 QEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEK---SKLQEIYQELTRLK 66
Query: 427 HVFPHLPSLESLDVSHNA-----PNIILCVYFQSLKLTHCSLSSLHVFP----HLPSLES 477
LP L + + L+ + L+ L LP
Sbjct: 67 AAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTEL---KAAVGELPEKSK 123
Query: 478 LDVSHNAIDHIEDSV 492
L + + ++ +V
Sbjct: 124 LQEIYQELTQLKAAV 138
Score = 36.3 bits (85), Expect = 0.008
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 432 LPSLESLDVSHNA-----PNIILCVYFQSLKLTHCSLSSL-HVFPHLPSLESLDVSHNAI 485
LP L + + L+ + L+ L LP L + +
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL 62
Query: 486 DHIEDSV 492
++ +V
Sbjct: 63 TRLKAAV 69
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 47.6 bits (113), Expect = 7e-06
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 15/128 (11%)
Query: 369 ITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSS 425
+ + S+ LT + K + LS N ++ + L+ L L+L+H + S
Sbjct: 35 MVDYSNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSEL---RVLRLSHNRIRS 90
Query: 426 LH--VFPHLPSLESLDVSHNAPNIILCVYFQSLK---LTHCSLSSLH---VFPHLPSLES 477
L VF LE LDVSHN I C SL+ L+ L F +L L
Sbjct: 91 LDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150
Query: 478 LDVSHNAI 485
L +S
Sbjct: 151 LGLSAAKF 158
Score = 46.0 bits (109), Expect = 2e-05
Identities = 42/268 (15%), Positives = 91/268 (33%), Gaps = 48/268 (17%)
Query: 278 TSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLK 337
++ W + + + + ++T+ + + +E LK +
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311
Query: 338 TLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQ---VDL 394
++ + + + + I LS IH M C ++
Sbjct: 312 ----VKNQVF------LFSKEALYSVFAEMNIKMLSISDTPFIH-MVCPPSPSSFTFLNF 360
Query: 395 SNNPLTNNCLRHLTPLVACESLKLTHCSLSSL----HVFPHLPSLESLDVSHNA----PN 446
+ N T++ + + L ++L L L + + ++ SLE+LDVS N+
Sbjct: 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420
Query: 447 IILCVYFQSLK-------------------------LTHCSLSSLHV-FPHLPSLESLDV 480
C + +S+ L + + S+ HL +L+ L+V
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNV 480
Query: 481 SHNAIDHIEDSVFAKYEACVQVILTGNP 508
+ N + + D VF + + + L NP
Sbjct: 481 ASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
Score = 42.9 bits (101), Expect = 2e-04
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 413 CESLKLTHCSLSSL-HVFPHLP-SLESLDVSHN------APNIILCVYFQSLKLTHCSLS 464
E + S +L HV LP ++L +S N P+I + L+L+H +
Sbjct: 30 NELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR 89
Query: 465 SLH--VFPHLPSLESLDVSHNAIDHIEDSVFAK 495
SL VF LE LDVSHN + +I A
Sbjct: 90 SLDFHVFLFNQDLEYLDVSHNRLQNISCCPMAS 122
Score = 38.3 bits (89), Expect = 0.005
Identities = 40/265 (15%), Positives = 79/265 (29%), Gaps = 31/265 (11%)
Query: 255 FNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRF-LLSLSCPYRNYISVALLTSIT 313
F L LT + + + L A + L+S S+ + +
Sbjct: 142 FGNLTKLTF---LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198
Query: 314 LLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYK-DSESKYKIETFIQTNPRANQITNL 372
L HP S S ++ + L L+L+ K + E+ ++ TF+ R + N+
Sbjct: 199 LHLVFHPNSLFSVQV----NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254
Query: 373 S--SLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
+ ++ T + F + + N + E + +L SL +
Sbjct: 255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR---EEFTYSETALKSLMI-- 309
Query: 431 HLPSLESLDVSHNAPNIILCVYFQSL------KLTHCSLSSLH--VFPHLPSLESLDVSH 482
V + + L+ +H P S L+ +
Sbjct: 310 -------EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362
Query: 483 NAIDHIEDSVFAKYEACVQVILTGN 507
N + + +IL N
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRN 387
Score = 34.8 bits (80), Expect = 0.065
Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 20/138 (14%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN-------NCLRHLTPL-VACESLK- 417
N++ N+S + S+ + +DLS N L LT L ++ +
Sbjct: 110 NRLQNISCCPMASL---------RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160
Query: 418 LTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLT--HCSLSSLHVFPHLPSL 475
L ++ LH+ L L S + + L L SL S+ V + +L
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220
Query: 476 ESLDVSHNAIDHIEDSVF 493
L +S+ ++
Sbjct: 221 GHLQLSNIKLNDENCQRL 238
Score = 29.8 bits (67), Expect = 2.2
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 455 SLKLTHCSLSSL-HVFPHLP-SLESLDVSHNAIDHIEDSVFAKY 496
+ S +L HV LP ++L +S N+I + +
Sbjct: 32 LESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFL 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 46.1 bits (110), Expect = 1e-05
Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 28/158 (17%)
Query: 371 NLSSLQLTSIHHM--HCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSS 425
L+ +L ++ + + + +++N L L L L+L L S
Sbjct: 67 YLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL---AELRLDRNQLKS 123
Query: 426 LH--VFPHLPSLESLDVSHNA-----PNIILCVYFQSL-KLTHCSLSS-------LHVFP 470
L VF L L L + +N + F L L L + F
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGV-----FDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 471 HLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
L L++L + +N + + + F E + L NP
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216
Score = 44.6 bits (106), Expect = 4e-05
Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 28/110 (25%)
Query: 393 DLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNAPNI 447
DL +N L++ LT L L L L +L +F L +LE+L V+ N
Sbjct: 43 DLQSNKLSSLPSKAFHRLTKL---RLLYLNDNKLQTLPAGIFKELKNLETLWVTDN---- 95
Query: 448 ILCVYFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAK 495
L +L VF L +L L + N + + VF
Sbjct: 96 --------------KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Score = 31.5 bits (72), Expect = 0.52
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 454 QSLKLTHCSLSSLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
+ L L LSSL F L L L ++ N + + +F + + + +T N
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 45.4 bits (108), Expect = 2e-05
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 20/111 (18%)
Query: 385 CFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNA 444
FA + +L +T+ L + + + + + S+ +LP++ L + N
Sbjct: 17 AFAETIKANLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGN- 73
Query: 445 PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAK 495
L + L +L L ++ N + + + VF K
Sbjct: 74 -----------------KLHDISALKELTNLTYLILTGNQLQSLPNGVFDK 107
Score = 40.4 bits (95), Expect = 9e-04
Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
NL +T + Q+ +N+ + + ++ + L L L L +
Sbjct: 25 NLKKKSVTDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDISALK 82
Query: 431 HLPSLESLDVSHNA----PNIILCVYFQSL-KLT--HC---SLSSLH--VFPHLPSLESL 478
L +L L ++ N PN + F L L L SL VF L +L L
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGV----FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 479 DVSHNAIDHIEDSVF 493
+++HN + + VF
Sbjct: 139 NLAHNQLQSLPKGVF 153
Score = 32.3 bits (74), Expect = 0.31
Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 40/176 (22%)
Query: 330 LKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSL-----QLTSIHHMH 384
+ L ++D + N I++ + N+ L +L I +
Sbjct: 34 AVTQNELNSIDQIIANNSD-----------IKSVQGIQYLPNVRYLALGGNKLHDISALK 82
Query: 385 CFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLD 439
+ + L+ N L N LT L + L L L SL VF L +L L+
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNL---KELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 440 VSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVFAK 495
++HN +L SL VF L +L LD+S+N + + + VF K
Sbjct: 140 LAHN-------------QLQ--SLPK-GVFDKLTNLTELDLSYNQLQSLPEGVFDK 179
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 43.0 bits (100), Expect = 1e-04
Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 25/105 (23%)
Query: 395 SNNPLTNNCLRHLTPLVACESL-KLTHCSLSS----------LHVFPHLPSLESLDVSHN 443
+ + + PL + + L + LP LE++D+S
Sbjct: 230 VEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289
Query: 444 APNIILCVYFQSLKLTHCSLSSL-HVFPHLPSLESLDVSHNAIDH 487
LT L + L+ +++ +N +
Sbjct: 290 -------------VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 43.0 bits (101), Expect = 2e-04
Identities = 25/194 (12%), Positives = 63/194 (32%), Gaps = 40/194 (20%)
Query: 317 HLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQ 376
+ + S +++RF +++++ ++
Sbjct: 49 FIGNCYAVSPATVIRRFPKVRSVE---------------LKGKPHFADFNLVPDGWGGYV 93
Query: 377 LTSIHHM-HCFAHCKQVDLSNNPLTNNCLRHLTPLVAC---ESLKLTHCSLSS----LHV 428
I M + +++ L +T++CL + + + L L+ C S +
Sbjct: 94 YPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI--AKSFKNFKVLVLSSCEGFSTDGLAAI 151
Query: 429 FPHLPSLESLDVSHNAPNII----------LCVYFQSLKLTHC----SLSSL-HVFPHLP 473
+L+ LD+ + + + SL ++ S S+L + P
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211
Query: 474 SLESLDVSHNAIDH 487
+L+SL ++
Sbjct: 212 NLKSLKLNRAVPLE 225
Score = 37.6 bits (87), Expect = 0.010
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 24/128 (18%)
Query: 370 TNLSSLQLTSIHHMHCFAHCKQV-DLSNNPLTNNC--LRHLTPLVACESLKLTHCSLSSL 426
N++ +L I + D+ + +C LR L+ L LT +
Sbjct: 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS-LSGL----LTDKVFEYI 451
Query: 427 HVFPHLPSLESLDVSHNAPNIIL---------CVYFQSLKLTHCSLS---SLHVFPHLPS 474
+ +E L V+ C + L++ C L L +
Sbjct: 452 --GTYAKKMEMLSVAF--AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507
Query: 475 LESLDVSH 482
+ SL +S
Sbjct: 508 MRSLWMSS 515
Score = 37.6 bits (87), Expect = 0.011
Identities = 16/139 (11%), Positives = 37/139 (26%), Gaps = 15/139 (10%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNP----LTNNCLRHLTPLVACESLKLTHCSLSSL 426
+ + +C+A + P + H +
Sbjct: 39 EIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE 98
Query: 427 HVFPHLPSLESLDVSH-NAPNIIL------CVYFQSLKLTHCSLSS----LHVFPHLPSL 475
+ LE + + + L F+ L L+ C S + +L
Sbjct: 99 AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158
Query: 476 ESLDVSHNAIDHIEDSVFA 494
+ LD+ + +D + +
Sbjct: 159 KELDLRESDVDDVSGHWLS 177
Score = 34.5 bits (79), Expect = 0.083
Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 29/145 (20%)
Query: 368 QITNLSSLQLTSI--HHMHCFAHC----KQVDLSN--NPLTNNCLRHLTPLVAC---ESL 416
+ +L + + H + F +++S + ++ + L L C +SL
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT--RCPNLKSL 216
Query: 417 KLTHC-SLSSL-HVFPHLPSLESLDVSHNAPNIILCVYF-------QSLKLTHCSLSS-- 465
KL L L + P LE L + VY +L S
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276
Query: 466 -----LHVFPHLPSLESLDVSHNAI 485
V+ L +L++S+ +
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATV 301
Score = 32.2 bits (73), Expect = 0.49
Identities = 22/154 (14%), Positives = 43/154 (27%), Gaps = 34/154 (22%)
Query: 366 ANQITNLSSLQLTSIHH----------MHCFAHCKQ-VDLSNNP-LTNNCLRHLTPLVAC 413
+ L L + CK+ LS L + + +
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290
Query: 414 -ESLKLTHCSLSS---LHVFPHLPSLESLDVSHNAPNIIL------CVYFQSLKLTHCSL 463
+L L++ ++ S + + P L+ L V + L C + L++
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEP 350
Query: 464 SSL------------HVFPHLPSLESLDVSHNAI 485
+ V P LES+ +
Sbjct: 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384
Score = 29.9 bits (67), Expect = 2.3
Identities = 14/128 (10%), Positives = 35/128 (27%), Gaps = 13/128 (10%)
Query: 365 RANQITNLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHL-TPLVACESLKLTH 420
+ ++ LT + C + V +TN L + +L
Sbjct: 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI 406
Query: 421 CSLSSLHVFPHLPSLESLD-VSHNAPNIILCVYFQSLKLTHC-SLSSL-HVFPHLPSLES 477
+ P + + ++ + L L+ + ++ + +E
Sbjct: 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDL------RRLSLSGLLTDKVFEYIGTYAKKMEM 460
Query: 478 LDVSHNAI 485
L V+
Sbjct: 461 LSVAFAGD 468
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 41.0 bits (96), Expect = 3e-04
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 22/98 (22%)
Query: 392 VDLSNNPLTNNCLRHLTPLVACESLKLTHC------SLSSLHVFPHLP-SLESLDVSHNA 444
+D +++ + + H+ L E ++L C L L +L S+ +++
Sbjct: 66 IDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125
Query: 445 PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
+T + +LH H +L+ L +S
Sbjct: 126 ------------NVTDKGIIALH---HFRNLKYLFLSD 148
Score = 32.5 bits (74), Expect = 0.16
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNP-LTNNCLRHLTPLVACESLKLTHCS--- 422
+ I + +L+ + ++ ++++ + +T+ + L + L L+
Sbjct: 96 HYIEDGCLERLSQLENLQ--KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153
Query: 423 ---LSSLHVFPHLPSLE-SLDV 440
LPSLE LD+
Sbjct: 154 EKEKIVQAFKTSLPSLELKLDL 175
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 42.2 bits (99), Expect = 3e-04
Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 21/133 (15%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQ---VDLSNNPLTNNCLRHLTPLVACESLKLTHCS----L 423
+LS+ + + C + + L L++ + L L L+ CS
Sbjct: 99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158
Query: 424 SSLHVFPHLPSLESLDVSH------NAPNIIL---CVYFQSLKLTHCSL----SSL-HVF 469
+ + L+ L++S + + L L+ S L +
Sbjct: 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218
Query: 470 PHLPSLESLDVSH 482
P+L LD+S
Sbjct: 219 RRCPNLVHLDLSD 231
Score = 39.5 bits (92), Expect = 0.002
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 23/127 (18%)
Query: 370 TNLSSLQLTSIHH-------MHCFAHCKQ---VDLSNNP-LTNNCLRHLTPLVACESLKL 418
++ L L+ C +DLS++ L N+C + L + L L
Sbjct: 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254
Query: 419 THCSL---SSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSL 475
+ C +L +P+L++L V V +L+L +L L + +
Sbjct: 255 SRCYDIIPETLLELGEIPTLKTLQVFG-------IVPDGTLQLLKEALPHLQI--NCSHF 305
Query: 476 ESLDVSH 482
++
Sbjct: 306 TTIARPT 312
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 41.8 bits (99), Expect = 4e-04
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 37/133 (27%)
Query: 369 ITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTN---NCLRHLTPLVACESLKLTHCSLSS 425
I++L +L + N ++ + + L S+ ++ L+
Sbjct: 145 ISSLPNLV--------------GITFDGNRISGAIPDSYGSFSKLF--TSMTISRNRLTG 188
Query: 426 LHVFPHLP------SLESLDVSHN-----APNII-LCVYFQSLKLTHCSLS-SLHVFPHL 472
+P +L +D+S N A + Q + L SL+ L
Sbjct: 189 -----KIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 473 PSLESLDVSHNAI 485
+L LD+ +N I
Sbjct: 244 KNLNGLDLRNNRI 256
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 41.6 bits (98), Expect = 4e-04
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 30/113 (26%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH----------------VFPHLP 433
+DLS N L L + SL+ + L
Sbjct: 199 TSLDLSANLLGLKSYAEL-----AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253
Query: 434 SLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
L+++ + ++ + ++L FP++ + +D + I
Sbjct: 254 HLQTVYLDYDIVKNMSKEQCKAL---------GAAFPNIQKIILVDKNGKEIH 297
Score = 40.8 bits (96), Expect = 8e-04
Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 39/135 (28%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH----------------VFPHLP 433
++L N L L + L +++SL+ +P
Sbjct: 141 TSLNLRGNDLGIKSSDEL-----IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195
Query: 434 -SLESLDVSHNAPNIILCVYF-QSLKLTHCSLSSLH----------------VFPHLPSL 475
S+ SLD+S N + + SL+ + L L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255
Query: 476 ESLDVSHNAIDHIED 490
+++ + ++ + ++
Sbjct: 256 QTVYLDYDIVKNMSK 270
Score = 36.2 bits (84), Expect = 0.022
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 35/116 (30%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL 449
+DL N ++ ++ S+ SL++ N I
Sbjct: 112 TVLDLGWNDFSSKSSSEF-----KQAFSNLPA------------SITSLNLRGNDLGIKS 154
Query: 450 CVYF-QSLKLTHCSLSSLH----------------VFPHLP-SLESLDVSHNAIDH 487
Q L +++SL+ +P S+ SLD+S N +
Sbjct: 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210
Score = 35.5 bits (82), Expect = 0.039
Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 40/133 (30%)
Query: 388 HCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH----------------VFPH 431
+DLS N L + L ++ T S++SL+ +
Sbjct: 23 GVTSLDLSLNNLYSISTVEL-----IQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77
Query: 432 LP-SLESLDVSHNAPNIILCVYF-QSLKLTHCSLSSLH----------------VFPHLP 473
+P ++ SL++S N + ++L +++ L F +LP
Sbjct: 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137
Query: 474 -SLESLDVSHNAI 485
S+ SL++ N +
Sbjct: 138 ASITSLNLRGNDL 150
Score = 29.3 bits (66), Expect = 3.4
Identities = 13/163 (7%), Positives = 42/163 (25%), Gaps = 43/163 (26%)
Query: 336 LKTLDPLRLNYYKDSESKYKIETFIQTNP-------RANQITNLSSLQLTSIHHMHCFAH 388
+ +L+ L LN + ++ + + + N+S Q ++ F +
Sbjct: 227 VVSLN-LCLNCLHGPSLEN-LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL--GAAFPN 282
Query: 389 CKQV---DLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAP 445
+++ D + + + + ++
Sbjct: 283 IQKIILVDKNGKEIHPSHSIPI-----SNLIRELSGKADVPS------------------ 319
Query: 446 NIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI-DH 487
+ Q L +++ L + + +H
Sbjct: 320 -----LLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEH 357
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 41.1 bits (96), Expect = 5e-04
Identities = 28/177 (15%), Positives = 57/177 (32%), Gaps = 31/177 (17%)
Query: 342 LRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIHHM----HCFAHCKQVDLSNN 397
+NY +I I ++ + I N + + + +DL
Sbjct: 78 KAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGL 137
Query: 398 PLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP-HLPSLESLDVSHNAPNIILCVYFQSL 456
+ + L C ++L + ++P L SL++S+N
Sbjct: 138 RSDPDLVAQNI----DVVLNRRSCMAATLRIIEENIPELLSLNLSNN------------- 180
Query: 457 KLTHCSLSSLHVFPHL----PSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNPV 509
L L + P+L+ L++S N + + K ++ L GN +
Sbjct: 181 -----RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 232
Score = 29.2 bits (65), Expect = 2.8
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 17/84 (20%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC--ESLKLTHCSLS 424
N++ L + + + K ++LS N L + R L + E L L SL
Sbjct: 180 NRLYRLDDMS----SIVQKAPNLKILNLSGNELKS--ERELDKIKGLKLEELWLDGNSLC 233
Query: 425 SLH---------VFPHLPSLESLD 439
+ P L LD
Sbjct: 234 DTFRDQSTYISAIRERFPKLLRLD 257
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 40.1 bits (94), Expect = 0.001
Identities = 21/141 (14%), Positives = 36/141 (25%), Gaps = 45/141 (31%)
Query: 383 MHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH--------------- 427
+ F +++ L N L + L + L C +++L
Sbjct: 122 LPVFLRARKLGLQLNSLGPEACKDL-----RDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176
Query: 428 -VFPHLPSLESLDVSHN--------------APNIILCVYFQSLKLTHCSLSSL------ 466
S+ L + H N L Q L + +
Sbjct: 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL----QELNVAYNGAGDTAALALA 232
Query: 467 HVFPHLPSLESLDVSHNAIDH 487
PSLE L + N +
Sbjct: 233 RAAREHPSLELLHLYFNELSS 253
Score = 33.2 bits (76), Expect = 0.19
Identities = 32/224 (14%), Positives = 70/224 (31%), Gaps = 32/224 (14%)
Query: 292 FLLSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYY---- 347
L+ L + + L I L L + ++ +L + L ++
Sbjct: 2 LLVGLLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEF 61
Query: 348 KDSESKYKIETFIQT-NPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRH 406
++ ++ + ++ N ++T + + ++ +V+L++ L LR
Sbjct: 62 QNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLG-SGRHALDEVNLASCQLDPAGLRT 120
Query: 407 LTP-LVACESLKLTHCSLSSLHV--------FPHLPSLESLDVSHN----------APNI 447
L P + L L SL + +L +S+N +
Sbjct: 121 LLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ-CQITTLRLSNNPLTAAGVAVLMEGL 179
Query: 448 ILCVYFQSLKLTHCSLSSLHV------FPHLPSLESLDVSHNAI 485
L L H L + L+ L+V++N
Sbjct: 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 38.8 bits (90), Expect = 0.004
Identities = 26/206 (12%), Positives = 62/206 (30%), Gaps = 15/206 (7%)
Query: 25 HNLMETIFEKRKN-QEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHE 83
+ +E K+++ QE ++ L EVL + + + L E
Sbjct: 67 THSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYS--PEAEV 124
Query: 84 LVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISR----APNYEKELELCNYYLELDERN 139
L+ + +KL +P+ W Q V + L C + L +
Sbjct: 125 LLSKAVKL-------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLS 177
Query: 140 FHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIE 199
+ D H + + + ++ + + +W+ LY + +
Sbjct: 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK-I 236
Query: 200 QDKYVNEFSMVESAVFTEPKDQSAWF 225
+ ++ ++ E +
Sbjct: 237 SQQALSAYAQAEKVDRKASSNPDLHL 262
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 37.6 bits (87), Expect = 0.009
Identities = 16/127 (12%), Positives = 39/127 (30%), Gaps = 23/127 (18%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC-ESLKLTHCSLSSLHVF 429
+ +SL++ + + ++ L + S+K+ + L F
Sbjct: 190 HNTSLEVLNFYMTEF-----------AKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238
Query: 430 ----PHLPSLESLDVSHNAPNIILCVYFQSL-KLTHCSLSSL------HVFPHLPSLESL 478
+L ++ + + KL LS + +FP + L
Sbjct: 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298
Query: 479 DVSHNAI 485
D+ + +
Sbjct: 299 DLLYALL 305
Score = 35.3 bits (81), Expect = 0.047
Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 20/109 (18%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVA--CESLKLTHCSLSS----LHVFPHLPSLESLDVSHN 443
K V +++ L L A E+LKL CS + L + H +++L + +
Sbjct: 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES 174
Query: 444 APNIILCVYFQSLKLTHCSLSSLHVFP-HLPSLESLDVSHNAIDHIEDS 491
+ LH H SLE L+ I
Sbjct: 175 -------------SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK 210
Score = 34.9 bits (80), Expect = 0.070
Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 17/124 (13%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNC--LRHLTPLVACESLKLTHCSLSSLHV 428
NL +L + +D L C LR + LT LS ++
Sbjct: 404 NLCDFRLVLLDREERITDLP-LDNGVRSLLIGCKKLRRFAFYLRQG--GLTDLGLS--YI 458
Query: 429 FPHLPSLESLDVSH-----NAPNIIL--CVYFQSLKLTHCSLSS---LHVFPHLPSLESL 478
+ P++ + + + C Q L++ C S LPSL L
Sbjct: 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518
Query: 479 DVSH 482
V
Sbjct: 519 WVQG 522
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.3 bits (83), Expect = 0.013
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 4 RKKESVSVQEAKKRSAKVKWYHNLMETIFEKRK--NQEYDDEAL-SLTSEVL 52
+ E ++AKK +W E + EK K N+ D ++++
Sbjct: 106 KVMEQEWREKAKK--DLEEWNQRQSEQV-EKNKINNRIADKAFYQQPDADII 154
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 35.8 bits (83), Expect = 0.032
Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 37/114 (32%)
Query: 390 KQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH-----------------VFPHL 432
+ + N L N ++ ++ + +H L ++ +
Sbjct: 162 RSIICGRNRLENGSMKEW-----AKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215
Query: 433 PSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSL-HVFPHLPSLESLDVSHNAI 485
L+ LD+ N TH S+L P+L L ++ +
Sbjct: 216 QELKVLDLQDN-------------TFTHLGSSALAIALKSWPNLRELGLNDCLL 256
Score = 33.9 bits (78), Expect = 0.11
Identities = 14/106 (13%), Positives = 34/106 (32%), Gaps = 16/106 (15%)
Query: 390 KQVDLSNNPLTNNCLRHL-TPLVAC---ESLKLTHCSLSSL------HVFPHLPSLESLD 439
+ L + +T + + L+ + + L+ ++ + LE +
Sbjct: 7 EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 66
Query: 440 VSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI 485
S + ++L+ L P L ++ +S NA
Sbjct: 67 FSDIFTGRVKDEIPEALR----LLLQ--ALLKCPKLHTVRLSDNAF 106
Score = 33.5 bits (77), Expect = 0.16
Identities = 20/145 (13%), Positives = 36/145 (24%), Gaps = 51/145 (35%)
Query: 388 HCKQVDLSNNPLTNNCLRHLTPLVACESLK----LTHCSLSSLHV--------------- 428
K++ LS N + R L E++ L S +
Sbjct: 33 SVKEIVLSGNTIGTEAARWL-----SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87
Query: 429 --FPHLPSLESLDVSHN----------APNIILCVYFQSLKLTHCSLS------------ 464
P L ++ +S N + + L L + L
Sbjct: 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147
Query: 465 ---SLHVFPHLPSLESLDVSHNAID 486
+ P L S+ N ++
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLE 172
Score = 32.4 bits (74), Expect = 0.38
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 36/129 (27%)
Query: 386 FAHCKQV---DLSNNPLTN-------NCLRHLTPLVACESLKLTHCSLSS---------L 426
A+C+++ DL +N T+ L+ L L L C LS+
Sbjct: 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL---RELGLNDCLLSARGAAAVVDAF 268
Query: 427 HVFPHLPSLESLDVSHNAPNIILCVYF-QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI 485
+ L++L + +N + + +P L L+++ N
Sbjct: 269 SKLEN-IGLQTLRLQYNEIELDAVRTLKTVID------------EKMPDLLFLELNGNRF 315
Query: 486 DHIEDSVFA 494
+D V
Sbjct: 316 SEEDDVVDE 324
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 34.6 bits (80), Expect = 0.039
Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 21/111 (18%)
Query: 414 ESLKLTHCSLSSLH---VFPHLPSLESLDVSHN-----APNIILCVYFQSL-KLTHCSLS 464
L L L + +F LP L L++ N PN F+ + L
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-----FEGASHIQELQLG 86
Query: 465 -----SLH--VFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGNP 508
+ +F L L++L++ N I + F + + L NP
Sbjct: 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 33.9 bits (78), Expect = 0.086
Identities = 35/139 (25%), Positives = 51/139 (36%), Gaps = 26/139 (18%)
Query: 364 PRANQITNLSSLQLTSIHHM--HCFAHCKQVDLSNNPLT---NNCLRHLTPLVACESLKL 418
P + +L S L ++ ++L N L LT L +L L
Sbjct: 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL---GTLGL 90
Query: 419 THCSLSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLE 476
+ L+SL VF HL L+ L + N +L SL S VF L L+
Sbjct: 91 ANNQLASLPLGVFDHLTQLDKLYLGGN-------------QLK--SLPS-GVFDRLTKLK 134
Query: 477 SLDVSHNAIDHIEDSVFAK 495
L ++ N + I F K
Sbjct: 135 ELRLNTNQLQSIPAGAFDK 153
Score = 27.7 bits (62), Expect = 8.0
Identities = 31/142 (21%), Positives = 46/142 (32%), Gaps = 41/142 (28%)
Query: 333 FDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSL---QLTSIHHMHCFAHC 389
FD L L L L NQ+ +L LT +
Sbjct: 79 FDDLTELGTLGLAN--------------------NQLASLPLGVFDHLTQL--------- 109
Query: 390 KQVDLSNNPLT---NNCLRHLTPLVACESLKLTHCSLSSLH--VFPHLPSLESLDVSHNA 444
++ L N L + LT L + L+L L S+ F L +L++L +S N
Sbjct: 110 DKLYLGGNQLKSLPSGVFDRLTKL---KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 445 PNIILCVYFQSLK-LTHCSLSS 465
+ F L L +L
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFG 188
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 31.9 bits (73), Expect = 0.28
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 27/122 (22%)
Query: 393 DLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESLDVSHNAPNII 448
L N T L + L + L++ +S+L F ++ L +L +S+N
Sbjct: 37 YLDGNQFTLVPKELSNYKHL---TLIDLSNNRISTLSNQSFSNMTQLLTLILSYN----- 88
Query: 449 LCVYFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTG 506
L + F L SL L + N I + + F A + +
Sbjct: 89 -------------RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135
Query: 507 NP 508
NP
Sbjct: 136 NP 137
Score = 30.3 bits (69), Expect = 0.91
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 17/83 (20%)
Query: 414 ESLKLTHCSLSSL-HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHL 472
L L + + + L +D+S+N +++ +LS+ F ++
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNN-------------RIS--TLSN-QSFSNM 77
Query: 473 PSLESLDVSHNAIDHIEDSVFAK 495
L +L +S+N + I F
Sbjct: 78 TQLLTLILSYNRLRCIPPRTFDG 100
Score = 29.6 bits (67), Expect = 1.8
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 454 QSLKLTHCSLSSL-HVFPHLPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
L L + + + L +D+S+N I + + F+ + +IL+ N
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 32.7 bits (75), Expect = 0.33
Identities = 23/173 (13%), Positives = 53/173 (30%), Gaps = 14/173 (8%)
Query: 5 KKESVSVQEAKKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNY 64
+EA+ + K L + +Y A++ ++L L
Sbjct: 124 NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT-AAIAFLDKILEVCVWDAELREL 182
Query: 65 RKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEK 124
R E + + + KL + + +++ + + +E
Sbjct: 183 RAECFIKEGEP---RKAISDLKAASKL-------KNDNTEAFYKISTLYYQLGD---HEL 229
Query: 125 ELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYSA 177
L L+LD+ + C+ + + V +K+ E + S Y +
Sbjct: 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 282
Score = 30.4 bits (69), Expect = 1.4
Identities = 17/111 (15%), Positives = 38/111 (34%), Gaps = 9/111 (8%)
Query: 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRE--LKLTKDCLLAQ 99
+ +LS E L+ D + + K+V K + EEL + + +
Sbjct: 228 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287
Query: 100 PKSYGTWFQ----RCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYR 146
P + C+ + + + +C+ L+++ N + R
Sbjct: 288 PSIAEYTVRSKERICHCFSKDEK---PVEAIRVCSEVLQMEPDNVNALKDR 335
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 31.4 bits (71), Expect = 0.80
Identities = 11/81 (13%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 22 KWYHNLM------ETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKAT 75
W + + ++ + +E A+ ++ +P I + YR+ + +
Sbjct: 120 NWIAEKISVDKNFDANYDLTEFKEAIGNAIKFITKENLEVPFI---YAYRRNYISSREKD 176
Query: 76 ---LAEEELHELVDRELKLTK 93
L E++L ++V +++
Sbjct: 177 GFLLTEDDLWDIVSLDIEFHS 197
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 31.4 bits (71), Expect = 0.96
Identities = 11/81 (13%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 22 KWYHNLM------ETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKAT 75
W + + ++ + +E A+ ++ +P I + YR+ + +
Sbjct: 117 NWIAEKISVDKNFDANYDLTEFKEAIGNAIKFITKENLEVPFI---YAYRRNYISSREKD 173
Query: 76 ---LAEEELHELVDRELKLTK 93
L E++L ++V +++
Sbjct: 174 GFLLTEDDLWDIVSLDIEFHS 194
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 30.5 bits (69), Expect = 1.3
Identities = 38/234 (16%), Positives = 68/234 (29%), Gaps = 61/234 (26%)
Query: 309 LTSITLLQHLHPGSSDSNEI--ILKRFDLLKTLD---------PLRLNYYKDSESKYKIE 357
+T +TL G ++ + + F LK LD + Y + + +
Sbjct: 27 ITHLTL-----TGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMA 81
Query: 358 TFIQTNPRA-NQI--------TNLSSLQL----TSIHHMHCFAHC---KQVDLSNNPLTN 401
F+ A + + L + L +I F C K + N
Sbjct: 82 NFV--PAYAFSNVVNGVTKGKQTLEKVILSEKIKNIED-AAFKGCDNLKICQIRKKTAPN 138
Query: 402 NCLRHLTPLVACESLKLTHCSLSSL-----------HVFPHLPSLESLDVSHNAPNIILC 450
L P +S+ L S F LE+ +
Sbjct: 139 -----LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDE 193
Query: 451 VYFQSLKLTHCSLSSL----------HVFPHLPSLESLDVSHNAIDHIEDSVFA 494
+ L+ + ++ + ++P+L SLD+S I D FA
Sbjct: 194 IMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA 247
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 30.5 bits (69), Expect = 1.7
Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 22/130 (16%)
Query: 24 YHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHM-KATLAEEELH 82
Y L + + K D+ +L SE R P+ + N+ E+L A ++
Sbjct: 341 YIQLACLAYRENKF----DDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY- 395
Query: 83 ELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAP------NYEKELELCNYYLELD 136
D ++L + K G + ++ + N+ + L +LD
Sbjct: 396 ---DLAIEL-------ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445
Query: 137 ERNFHCWDYR 146
R+
Sbjct: 446 PRSEQAKIGL 455
>2bas_A YKUI protein; EAL domain, structural genom protein structure
initiative, midwest center for structural genomics,
MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP:
c.1.33.1 d.110.6.2 PDB: 2w27_A*
Length = 431
Score = 30.1 bits (68), Expect = 1.9
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 9/76 (11%)
Query: 77 AEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDH----ISRAPNYEKELELCNYY 132
+ + L L D + + R Y+ D ++ N K+ +
Sbjct: 303 VHQAVTSLRKNNLSSDDDFIKKLAEELTDCSFRIYMCDEEGDQLT--GNVFKQ---DGEW 357
Query: 133 LELDERNFHCWDYRRY 148
+ E W +R Y
Sbjct: 358 IYQPEYAEKNWSWRPY 373
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 29.5 bits (67), Expect = 2.4
Identities = 19/150 (12%), Positives = 46/150 (30%), Gaps = 14/150 (9%)
Query: 5 KKESVSVQEAKKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIPDINSLWNY 64
+EA+ + K L + +Y A++ ++L L
Sbjct: 101 NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT-AAITFLDKILEVCVWDAELREL 159
Query: 65 RKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHISRAPNYEK 124
R E + + + K + + +++ + + +E
Sbjct: 160 RAECFIKEG----------EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD---HEL 206
Query: 125 ELELCNYYLELDERNFHCWDYRRYVTDRHK 154
L L+LD+ + C+ + + V +K
Sbjct: 207 SLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.5
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 17/42 (40%)
Query: 12 QEAKKRSAKVKWYHNLMETIFEKRKNQEYDDE--ALSLTSEV 51
Q KK A +K Y DD AL++ + +
Sbjct: 20 QALKKLQASLKLYA---------------DDSAPALAIKATM 46
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 28.8 bits (65), Expect = 4.5
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 437 SLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE-DSVF 493
S+ + ++ P ++ V T + +L + P +E L S ++ +
Sbjct: 74 SIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLI 131
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
{Mycobacterium smegmatis}
Length = 1113
Score = 29.1 bits (66), Expect = 4.9
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 188 LYPDPNNHLPIEQDKYVNEFSMV---ESAVFTEPKDQSAWFYQ----RWLLGERTSPVQI 240
L P P L D+Y N E EP +Q AW +L + + ++
Sbjct: 1029 LAPLPRRRLAETLDRYPNVKEKFWVQE-----EPANQGAWPSFGLTLPEILPDHFTGLKR 1083
Query: 241 IS 242
IS
Sbjct: 1084 IS 1085
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 28.5 bits (64), Expect = 5.6
Identities = 21/140 (15%), Positives = 40/140 (28%), Gaps = 30/140 (21%)
Query: 56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDH 115
P+I L ++ L + EE +E + +L D F + +
Sbjct: 11 PNIEKLKASFQQALQSFQKASNAEEQNEAMKEINQLRND------------FSTMAQICY 58
Query: 116 ISRA-----PNYEKELELCN------------YYLELDERNFHCWDYRRYVTDRHKVAPL 158
I Y++E + + YY L F ++ +A
Sbjct: 59 IRHTIDTNDEFYKQEQDFFDEVEPIVKGLVNDYYRALVSSPFRSQLEGKWGKQLFALAE- 117
Query: 159 KELNYSTEKIEANFSNYSAW 178
EL + I + +
Sbjct: 118 AELKTYSPDIVEDLQLENKL 137
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 28.4 bits (64), Expect = 5.9
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPK 101
LTS V+ P S L+ + EL L + + L P
Sbjct: 39 KMCYKLTSVVMEKDPFHASCLPVHIGTLVELN---KANELFYLSHKLVDL-------YPS 88
Query: 102 SYGTWF 107
+ +WF
Sbjct: 89 NPVSWF 94
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium
smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Length = 868
Score = 28.7 bits (65), Expect = 6.1
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 188 LYPDPNNHLPIEQDKYVNEFSMV---ESAVFTEPKDQSAWFYQ----RWLLGERTSPVQI 240
L P P L D+Y N E EP +Q AW +L + + ++
Sbjct: 784 LAPLPRRRLAETLDRYPNVKEKFWVQE-----EPANQGAWPSFGLTLPEILPDHFTGLKR 838
Query: 241 IS 242
IS
Sbjct: 839 IS 840
>3sks_A Putative oligoendopeptidase F; structural genomics, center for
structural genomics of infec diseases, csgid, protease,
hydrolase; 2.05A {Bacillus anthracis}
Length = 567
Score = 28.2 bits (63), Expect = 9.2
Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 30/140 (21%)
Query: 56 PDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDH 115
P+I L L EE +++ ++ D F L +
Sbjct: 14 PNIEELKEKFTVALEKFDNAKTVEEQKQVIHSINEIRND------------FGTMGNLCY 61
Query: 116 ISRA-----PNYEKELELCN------------YYLELDERNFHCWDYRRYVTDRHKVAPL 158
I + Y++E + + YY L F Y +A
Sbjct: 62 IRHSVDTTDAFYKEEQDFFDEFSPVVQGYGTKYYNALIHSPFREELEAYYGKQLFALAE- 120
Query: 159 KELNYSTEKIEANFSNYSAW 178
+L ++++ + +
Sbjct: 121 CDLKTYSDEVVKDLQLENKL 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.404
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,719,595
Number of extensions: 444802
Number of successful extensions: 2648
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1272
Number of HSP's successfully gapped: 403
Length of query: 522
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 424
Effective length of database: 3,965,535
Effective search space: 1681386840
Effective search space used: 1681386840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.8 bits)