RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13451
(522 letters)
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase
alpha-subunit, N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 334
Score = 137 bits (346), Expect = 4e-37
Identities = 133/363 (36%), Positives = 181/363 (49%), Gaps = 46/363 (12%)
Query: 1 MHGRKKESVSVQEA----KKRSAKVKWYHNLMETIFEKRKNQEYDDEALSLTSEVLRNIP 56
MHGR K S ++A +R K+K Y + + +F+KR+ E D+ L LTS++L P
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 57 DINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPKSYGTWFQRCYVLDHI 116
D +LWN R+EVL H++ + EE LV EL + CL PKSYGTW RC++L +
Sbjct: 61 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 120
Query: 117 SRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKELNYSTEKIEANFSNYS 176
PN+ +ELELC +LE DERNFHCWDYRR+V + VAP +EL ++ I NFSNYS
Sbjct: 121 PE-PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179
Query: 177 AWHYRSKLLPLL--YPDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQRWLLGER 234
+WHYRS LLP L PD + ++ + E +V++A FT+P DQSAWFY RWLLG
Sbjct: 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239
Query: 235 TSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLL 294
+ + V + L S L W
Sbjct: 240 EPLFRCELSVEK--------------------STVLQSELESCKELQELEPENKW----- 274
Query: 295 SLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKY 354
L +I LL E + + F LK +DP+R Y D SK+
Sbjct: 275 -------------CLLTIILLMRALDPLLYEKETL-QYFSTLKAVDPMRAAYLDDLRSKF 320
Query: 355 KIE 357
+E
Sbjct: 321 LLE 323
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase
alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 63.8 bits (154), Expect = 1e-11
Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 19/199 (9%)
Query: 36 KNQEYDDEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDC 95
+ E + A LT + + ++W++R+ +L ++ L E E+
Sbjct: 54 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHE---------EMNYITAI 104
Query: 96 LLAQPKSYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKV 155
+ QPK+Y W R + + +ELE L D +N+H W +R++V +
Sbjct: 105 IEEQPKNYQVWHHRRV---LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI-QEFK 160
Query: 156 APLKELNYSTEKIEANFSNYSAWHYRSKLLPLLYPDPNNHLPIEQDKYVNEFSMVESAVF 215
EL Y + ++ + N S W+ R ++ + + + +Y E +
Sbjct: 161 LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE------MIK 214
Query: 216 TEPKDQSAWFYQRWLLGER 234
P ++SAW Y + +L +R
Sbjct: 215 LVPHNESAWNYLKGILQDR 233
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 57.7 bits (138), Expect = 1e-09
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 6/118 (5%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
L + Q+++I + ++L+ N L + L L L ++S +
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISPVS 326
Query: 431 HLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484
L L+ L ++N ++ L H +S L +L + L ++ A
Sbjct: 327 SLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 384
Score = 48.8 bits (115), Expect = 9e-07
Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 11/189 (5%)
Query: 256 NQLVDLTSTSQIKVDSNVLMSWTSLNGASRSFIWVRFLLSLSCPYRNYISVALLTSITLL 315
NQ+ D+T + + ++ L + + L L ++A L+ +T L
Sbjct: 207 NQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKL 265
Query: 316 QHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSL 375
L G++ + I L L + + +N + L
Sbjct: 266 TELKLGANQISNIS--------PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317
Query: 376 QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSL 435
++ I + +++ +NN +++ + L L L H +S L +L +
Sbjct: 318 NISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTRI 375
Query: 436 ESLDVSHNA 444
L ++ A
Sbjct: 376 TQLGLNDQA 384
Score = 47.3 bits (111), Expect = 3e-06
Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
+L++ Q++++ + ++ L N ++N + L L A +L+L L +
Sbjct: 247 DLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPIS 304
Query: 431 HLPSLESLDVSHNA----PNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAID 486
+L +L L + N + Q L + +S + +L ++ L HN I
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQIS 364
Query: 487 HI 488
+
Sbjct: 365 DL 366
Score = 46.9 bits (110), Expect = 3e-06
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH 427
+L+ QL I + + +DL+NN ++N L L+ L LKL +S++
Sbjct: 222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNIS 279
Query: 428 VFPHLPSLESLDVSHN----APNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHN 483
L +L +L+++ N I L L ++S + L L+ L ++N
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANN 339
Query: 484 AIDHIE 489
+ +
Sbjct: 340 KVSDVS 345
Score = 33.1 bits (74), Expect = 0.083
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
+L+ + S+ +L +L ++ S+N + I
Sbjct: 47 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT 82
Score = 32.7 bits (73), Expect = 0.10
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 20/102 (19%)
Query: 386 FAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAP 445
A + L +T+ T L +L+ + S+ +L +L ++ S+N
Sbjct: 21 LAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-- 76
Query: 446 NIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDH 487
L+ + +L L + +++N I
Sbjct: 77 ----------------QLTDITPLKNLTKLVDILMNNNQIAD 102
Score = 27.7 bits (60), Expect = 4.2
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCS 422
L + SI + + Q++ SNN LT+ +TPL L +
Sbjct: 50 QADRLGIKSIDGVEYLNNLTQINFSNNQLTD-----ITPLKNLTKLVDILMN 96
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 40.1 bits (93), Expect = 8e-05
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 16/123 (13%)
Query: 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLH 427
++ +L+ LT + H+ +DLS+N L L L E L+ + +L ++
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD 59
Query: 428 VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDH 487
+LP L+ L + +N +L +++ P L L++ N++
Sbjct: 60 GVANLPRLQELLLCNN-------------RLQ--QSAAIQPLVSCPRLVLLNLQGNSLCQ 104
Query: 488 IED 490
E
Sbjct: 105 EEG 107
Score = 33.5 bits (76), Expect = 0.018
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDSVF 493
+ L L H L+ L L + LD+SHN + + ++
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALA 40
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 39.8 bits (92), Expect = 2e-04
Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 22/146 (15%)
Query: 369 ITNLSSLQLTSIH---HMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS 425
+ L Q+ + + +DL L L ++
Sbjct: 1 LNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRS----DPDLVAQNIDVVLNRRSSMAAT 56
Query: 426 LH-VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNA 484
L + ++P L SL++S+N +L + P+L+ L++S N
Sbjct: 57 LRIIEENIPELLSLNLSNN-------------RLYRLD-DMSSIVQKAPNLKILNLSGNE 102
Query: 485 IDHIEDSVFAKYEACVQVILTGNPVS 510
+ + K ++ L GN +S
Sbjct: 103 LKSERELDKIKGLKLEELWLDGNSLS 128
Score = 30.2 bits (67), Expect = 0.37
Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 20/133 (15%)
Query: 309 LTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQ 368
L + + L+ S + + + L L L+ + +
Sbjct: 38 LVAQNIDVVLNR-RSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV--QKAPNLK 94
Query: 369 ITNLSSLQLTSIHHM--HCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
I NLS +L S + +++ L N L++ T +
Sbjct: 95 ILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI---------------S 139
Query: 427 HVFPHLPSLESLD 439
+ P L LD
Sbjct: 140 AIRERFPKLLRLD 152
Score = 28.2 bits (62), Expect = 1.3
Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 20/131 (15%)
Query: 368 QITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSS-- 425
L L S + ++ ++ + + SL L++ L
Sbjct: 23 SQQALDLKGLRSDPDLVAQNIDVVLNRRSS-MAATLRIIEENIPELLSLNLSNNRLYRLD 81
Query: 426 --LHVFPHLPSLESLDVSHN------APNIILCVYFQSLKLTHCSLSSLH---------V 468
+ P+L+ L++S N + I + + L L SLS +
Sbjct: 82 DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141
Query: 469 FPHLPSLESLD 479
P L LD
Sbjct: 142 RERFPKLLRLD 152
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 39.0 bits (89), Expect = 0.001
Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 22/111 (19%)
Query: 381 HHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDV 440
+ + N +N + E L +++ L L P LE L
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP--ALPPRLERLIA 311
Query: 441 SHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDS 491
S N L+ + +L+ L V +N + D
Sbjct: 312 SFN------------------HLAEVP--ELPQNLKQLHVEYNPLREFPDI 342
Score = 32.1 bits (71), Expect = 0.15
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 375 LQLTSIHHMHCFAHCKQVDLSNNPLTN--NCLRHLTPLVACESLKLTHCSLSSLHVFPHL 432
+++++SNN L L E L + L+ +
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRL------ERLIASFNHLAEVP--ELP 323
Query: 433 PSLESLDVSHN 443
+L+ L V +N
Sbjct: 324 QNLKQLHVEYN 334
Score = 31.3 bits (69), Expect = 0.29
Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 4/121 (3%)
Query: 373 SSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHL 432
L + + P + L +
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263
Query: 433 PSLESLDVSHNAPNIILCVY--FQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIED 490
P+L L+ S N + + + L +++ L L P LE L S N + + +
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEVPE 321
Query: 491 S 491
Sbjct: 322 L 322
Score = 29.4 bits (64), Expect = 1.0
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDS 491
L+L + LSSL P LESL S N++ + +
Sbjct: 41 HELELNNLGLSSLP--ELPPHLESLVASCNSLTELPEL 76
Score = 29.4 bits (64), Expect = 1.1
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 414 ESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLP 473
L+L + LSSL P LESL S N+ L QSLK ++L LP
Sbjct: 41 HELELNNLGLSSLP--ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 97
Query: 474 SLESLDVSHNAIDH 487
L N
Sbjct: 98 PLLEYLGVSNNQLE 111
Score = 26.7 bits (57), Expect = 6.9
Identities = 21/113 (18%), Positives = 36/113 (31%)
Query: 379 SIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESL 438
+ + + + +N L P + L + SL L
Sbjct: 190 GNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFL 249
Query: 439 DVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIEDS 491
DVS N + + + L S + PSLE L+VS+N + +
Sbjct: 250 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL 302
Score = 26.7 bits (57), Expect = 7.6
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 9/101 (8%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
L++L L+S+ H + + S N LT L L +SLK ++L
Sbjct: 44 ELNNLGLSSLPE--LPPHLESLVASCNSLT-----ELPEL--PQSLKSLLVDNNNLKALS 94
Query: 431 HLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPH 471
LP L N L S L + + +
Sbjct: 95 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL 135
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 37.7 bits (86), Expect = 0.002
Identities = 28/207 (13%), Positives = 61/207 (29%), Gaps = 18/207 (8%)
Query: 298 CPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIE 357
+N + LQ L ++ ++ F+ L + + L S +
Sbjct: 85 YLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144
Query: 358 TFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLK 417
F + ++ +T+I ++ L N +T L L L
Sbjct: 145 AF--QGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201
Query: 418 LTHCSLSSLH--VFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSS---------- 465
L+ S+S++ + P L L +++N + + L +
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 261
Query: 466 ---LHVFPHLPSLESLDVSHNAIDHIE 489
S + + N + + E
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWE 288
Score = 31.5 bits (70), Expect = 0.20
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 415 SLKLTHCSLSSLHVFPH--LPSLESLDVSHNAPNIILCVYFQSLK-LTHCSLSSLH---- 467
L++ CS L P P LD+ +N I F++LK L L +
Sbjct: 11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70
Query: 468 ---VFPHLPSLESLDVSHNAIDHIEDSVFAKYE 497
F L LE L +S N + + + + +
Sbjct: 71 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ 103
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 36.9 bits (84), Expect = 0.003
Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 18/102 (17%)
Query: 381 HHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDV 440
+ LS + L L L +LK +S + LP+L + +
Sbjct: 143 NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHL 202
Query: 441 SHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSH 482
+N +S + + +L + +++
Sbjct: 203 KNN------------------QISDVSPLANTSNLFIVTLTN 226
Score = 31.5 bits (70), Expect = 0.18
Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 386 FAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHN 443
A+ ++ + +T+ L +L ++++ +L +L L++ N
Sbjct: 18 LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN 73
Score = 30.4 bits (67), Expect = 0.40
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDH 487
+L ++++ +L +L L++ N I
Sbjct: 44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD 77
Score = 28.8 bits (63), Expect = 1.2
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 460 HCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
+S + LP+L + + +N I +
Sbjct: 182 DNKISDISPLASLPNLIEVHLKNNQISDVS 211
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 35.4 bits (80), Expect = 0.011
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 20/102 (19%)
Query: 380 IHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLD 439
I+ + + + L NN +T+ + L ++L L +S + L L++L
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 184
Query: 440 VSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVS 481
+S N +S L L +L+ L++
Sbjct: 185 LSKN------------------HISDLRALAGLKNLDVLELF 208
Score = 31.5 bits (70), Expect = 0.19
Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 386 FAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVSHNAP 445
FA + +L +T+ L + + + + + S+ +LP++ L ++ N
Sbjct: 23 FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-- 78
Query: 446 NIILCVYFQSLKLTHCSLSSLHVFPH 471
+ +LK +
Sbjct: 79 KLTDIKPLANLKNLGWLFLDENKVKD 104
Score = 29.2 bits (64), Expect = 0.87
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 454 QSLKLTHCSLSSLHVFPHLPSLESLDVSHNAI 485
+ + + S+ +LP++ L ++ N +
Sbjct: 49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 80
Score = 29.2 bits (64), Expect = 0.98
Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 24/143 (16%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLT-NNCLRHLTPLVACESLKLTHCSLSSLHVF 429
++ + S+ + + ++ L+ N LT L +L L + LSSL
Sbjct: 52 IANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDL 111
Query: 430 PHLPSLESLDVSHNAPNIIL-----------------------CVYFQSLKLTHCSLSSL 466
L SL + N ++ +L L +S +
Sbjct: 112 KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI 171
Query: 467 HVFPHLPSLESLDVSHNAIDHIE 489
L L++L +S N I +
Sbjct: 172 VPLAGLTKLQNLYLSKNHISDLR 194
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 34.6 bits (78), Expect = 0.017
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 18/98 (18%)
Query: 381 HHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDV 440
L + T + + L+ L + + L + ++ L +L +LE LD+
Sbjct: 120 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDI 179
Query: 441 SHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESL 478
S N +S + V L +LESL
Sbjct: 180 SSN------------------KVSDISVLAKLTNLESL 199
Score = 33.5 bits (75), Expect = 0.033
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 359 FIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLK- 417
I +TNL+ L+L+S A L ++N + L PL +L+
Sbjct: 117 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLER 176
Query: 418 --LTHCSLSSLHVFPHLPSLESL 438
++ +S + V L +LESL
Sbjct: 177 LDISSNKVSDISVLAKLTNLESL 199
Score = 31.6 bits (70), Expect = 0.18
Identities = 23/168 (13%), Positives = 55/168 (32%), Gaps = 7/168 (4%)
Query: 322 SSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSSLQLTSIH 381
++ ++ + D + TL K + + Q N NQ+T+++ L+ +
Sbjct: 28 TNVTDTVSQTDLDQVTTLQ-ADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKL 86
Query: 382 HMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDVS 441
+ + D++ N + + + ++
Sbjct: 87 VDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI------ 140
Query: 442 HNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHNAIDHIE 489
+ + Q L + ++ L +L +LE LD+S N + I
Sbjct: 141 SDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS 188
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 33.4 bits (75), Expect = 0.033
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 437 SLDVSHNAPNIILCVYFQSLKLTHCSLSSL-HVFPHLPSLESLDVSHNAIDHIED 490
+ ++ A V + L L + + ++ L +++D S N I ++
Sbjct: 4 TAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 58
Score = 28.8 bits (63), Expect = 1.1
Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 13/131 (9%)
Query: 362 TNPRANQITNLSSLQLTSIHHM-HCFAHCKQVDLSNNPLTN--------NCLRHLTPLVA 412
TN ++ +L ++ I ++ +D S+N + L
Sbjct: 15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNR 74
Query: 413 CESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIIL----CVYFQSLKLTHCSLSSLHV 468
+ L + +++ P L + +T+ L+V
Sbjct: 75 ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 134
Query: 469 FPHLPSLESLD 479
+P + LD
Sbjct: 135 IYKVPQVRVLD 145
Score = 28.0 bits (61), Expect = 2.0
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 399 LTNNCLRHLTPLVACESLK---LTHCSLSSL-HVFPHLPSLESLDVSHNAPNII 448
LT + + L + + ++ L +++D S N +
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL 56
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 33.7 bits (75), Expect = 0.051
Identities = 14/119 (11%), Positives = 34/119 (28%), Gaps = 15/119 (12%)
Query: 376 QLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSL 435
+L + L + L C ++ L
Sbjct: 216 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 275
Query: 436 ESLDVSHNAPNIILCVYFQSLKLTHCSLSSL--HVFPHLPSLESLDVSHNAIDHIEDSV 492
++L + +N ++ ++ +L + +P L L+++ N +D V
Sbjct: 276 QTLRLQYN-------------EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 321
Score = 30.6 bits (67), Expect = 0.46
Identities = 8/77 (10%), Positives = 23/77 (29%), Gaps = 17/77 (22%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
++ + + + + L N + + +R L +
Sbjct: 253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV---------------- 296
Query: 427 HVFPHLPSLESLDVSHN 443
+ +P L L+++ N
Sbjct: 297 -IDEKMPDLLFLELNGN 312
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 33.6 bits (75), Expect = 0.055
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 381 HHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDV 440
+ + +DL NN + + LT L SL ++ +L P +L+ DV
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE--IPQGGNLQRFDV 295
Query: 441 SHNAPNIILCVYFQSLKLTHCS 462
S A N LC L C+
Sbjct: 296 SAYANNKCLC----GSPLPACT 313
Score = 26.6 bits (57), Expect = 6.7
Identities = 14/105 (13%), Positives = 24/105 (22%), Gaps = 19/105 (18%)
Query: 381 HHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL--HVFPHLPSLESL 438
+ Q L + L L + + L L SL
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 439 DVSHNAPNIILCVYFQSLKLTHCSLSSLHVFPHLPSLESLDVSHN 483
+VS N L + +L + ++N
Sbjct: 274 NVSFN-------------NLC----GEIPQGGNLQRFDVSAYANN 301
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 33.8 bits (75), Expect = 0.057
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 17/76 (22%)
Query: 414 ESLKLTHCSLSSL---HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSSL-HVF 469
+SL + LS + P L + + + LT +
Sbjct: 5 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-------------GLTEARCKDISSAL 51
Query: 470 PHLPSLESLDVSHNAI 485
P+L L++ N +
Sbjct: 52 RVNPALAELNLRSNEL 67
Score = 28.8 bits (62), Expect = 1.9
Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 2/97 (2%)
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
+T ++S + +++L +N L + + + + S K+ SL +
Sbjct: 37 CGLTEARCKDISS--ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Query: 427 HVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSL 463
+ + S + L + L L
Sbjct: 95 CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 131
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 32.8 bits (73), Expect = 0.087
Identities = 33/172 (19%), Positives = 55/172 (31%), Gaps = 3/172 (1%)
Query: 294 LSLSCPYRNYISVALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESK 353
L LS S+A L T L L+ + L+ L L L L++ +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVLGTLDLSHNQLQSLP 93
Query: 354 YKIETFIQTNPRANQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVAC 413
+T L+SL L ++ + L TP +
Sbjct: 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL-LTPTPKLEK 152
Query: 414 ESLKLTHCSLSSLHVFPHLPSLESLDVSHNAPNIILCVYFQSLKLTHCSLSS 465
SL + + + L +L++L + N+ I +F S L L
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204
Score = 28.5 bits (62), Expect = 1.6
Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 371 NLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFP 430
N LT++ + LS N L L L P L L L+ L V
Sbjct: 16 NCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Query: 431 HLPSLES 437
LP L +
Sbjct: 75 TLPVLGT 81
Score = 28.1 bits (61), Expect = 2.5
Identities = 11/72 (15%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Query: 450 CVYFQSLKLTHCSLSSLHVFPH--LPSLESLDVSHNAIDHIEDSVFAKYEACVQVILTGN 507
S +C +L P L +S N + + Y Q+ L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65
Query: 508 PVSADMVVKHCT 519
++ V
Sbjct: 66 ELTKLQVDGTLP 77
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 30.1 bits (66), Expect = 0.62
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 381 HHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSL---SSLHVFPHLPSLES 437
C + L N+C + L + L L+ C +L +P+L++
Sbjct: 170 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 229
Query: 438 LDVSHNAPNIILCVYFQSLK 457
L V P+ L + ++L
Sbjct: 230 LQVFGIVPDGTLQLLKEALP 249
Score = 28.9 bits (63), Expect = 1.6
Identities = 26/184 (14%), Positives = 55/184 (29%), Gaps = 14/184 (7%)
Query: 307 ALLTSITLLQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRA 366
+L+ + LQ+L ++ I+ L L L+
Sbjct: 65 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS----------GFSEFALQ 114
Query: 367 NQITNLSSLQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSL 426
+++ S L ++ F + +L+ +
Sbjct: 115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174
Query: 427 HVFPHLPSLESLDVSHNAPNIILCV-YFQSLKLTHCSL---SSLHVFPHLPSLESLDVSH 482
HL +S+ + ++ + Y Q L L+ C +L +P+L++L V
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234
Query: 483 NAID 486
D
Sbjct: 235 IVPD 238
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 29.1 bits (63), Expect = 1.1
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 1/93 (1%)
Query: 381 HHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPSLESLDV 440
+ + ++ + +NC + T L + VF LD+
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208
Query: 441 SHNAPNIILCVYFQSL-KLTHCSLSSLHVFPHL 472
S + + ++L KL S +L P L
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 241
Score = 28.7 bits (62), Expect = 1.7
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 467 HVFPHLPSLESLDVSHNAIDHIEDSVFAK 495
VF LD+S I +
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLEN 223
Score = 28.0 bits (60), Expect = 2.9
Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 455 SLKLTHCSLSSLHVFPH--LPSLESLDVSHNAIDHIEDSVFAKYEACVQVIL 504
S ++ C S + P + L + I+ F+ + ++ +
Sbjct: 9 SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 60
>d1ohfa_ b.121.4.8 (A:) Tetraomegavirus capsid protein {Nudaurelia
capensis omega virus [TaxId: 12541]}
Length = 539
Score = 29.2 bits (65), Expect = 1.4
Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 14/135 (10%)
Query: 170 ANFSNYSAWHYRSKLLPLLY--PDPNNHLPIEQDKYVNEFSMVESAVFTEPKDQSAWFYQ 227
FS+ W R ++L Y PDP L + V+++ + + T + Q
Sbjct: 143 FTFSDDPTWFVRIRVLHPTYDLPDPTEGL----LRTVSDYRLTYKS-ITCEANMPTLVDQ 197
Query: 228 RWLLGERTSPVQIISAGVLPSGVTFVTFNQLVDLTSTSQIKVDSNVLMSWTSL-NGASRS 286
+ +G + I + G FV + ++ + + V ++W S+ G S
Sbjct: 198 GFWIGGHYALTPIATTQNAVEGSGFVH------PFNVTRPGIAAGVTLTWASMPPGGSAP 251
Query: 287 FIWVRFLLSLSCPYR 301
++ + ++
Sbjct: 252 SGDPAWIPDSTTQFQ 266
>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei
[TaxId: 2209]}
Length = 101
Score = 27.3 bits (61), Expect = 1.4
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 16/78 (20%)
Query: 59 NSLWNYRKEV---LLHMKATLAEEELHELVDRELKLTKDCLLA--------QPKSYGTWF 107
N L N R+E+ + + +T + ++ + L + L+ +S G
Sbjct: 11 NPLLN-RRELDFIVKYEGSTPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGY-- 67
Query: 108 QRCYVLDHISRAPNYEKE 125
+ + R E+E
Sbjct: 68 --AKLYEDADRMKQVEQE 83
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 28.2 bits (61), Expect = 2.8
Identities = 14/143 (9%), Positives = 29/143 (20%)
Query: 42 DEALSLTSEVLRNIPDINSLWNYRKEVLLHMKATLAEEELHELVDRELKLTKDCLLAQPK 101
A+ L ++ P W Y + L + L+A
Sbjct: 36 PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV 95
Query: 102 SYGTWFQRCYVLDHISRAPNYEKELELCNYYLELDERNFHCWDYRRYVTDRHKVAPLKEL 161
S+ + + + Y E +R + + E+
Sbjct: 96 SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEV 155
Query: 162 NYSTEKIEANFSNYSAWHYRSKL 184
+ L
Sbjct: 156 KELFLAAVRLDPTSIDPDVQCGL 178
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 26.7 bits (57), Expect = 7.7
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 452 YFQSLKLTHCSLSSLHVFPH--LPSLESLDVSHNAIDHIEDSVFAKY 496
Y + T C L P + + + + N I H+ + F
Sbjct: 9 YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRAC 55
Score = 26.3 bits (56), Expect = 8.2
Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 12/133 (9%)
Query: 315 LQHLHPGSSDSNEIILKRFDLLKTLDPLRLNYYKDSESKYKIETFIQTNPRANQITNLSS 374
L HL + + + + F L +LD L L+ + + + N S
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 375 LQLTSIHHMHCFAHCKQVDLSNNPLTNNCLRHLTPLVACESLKLTHCSLSSLHVFPHLPS 434
+ + + L++NP +C PL A L SS V LP
Sbjct: 215 AL--PTEALAPLRALQYLRLNDNPWVCDC--RARPLWA----WLQKFRGSSSEVPCSLPQ 266
Query: 435 ----LESLDVSHN 443
+ ++ N
Sbjct: 267 RLAGRDLKRLAAN 279
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.404
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,929,509
Number of extensions: 88859
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 82
Length of query: 522
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 433
Effective length of database: 1,185,626
Effective search space: 513376058
Effective search space used: 513376058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)