BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13453
(764 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 177/311 (56%), Positives = 232/311 (74%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
EFR GK +D++A+Y++ I R V P VEPGYL L+P P+E + + I+ D+ +I
Sbjct: 5 EFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKII 64
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WLGK
Sbjct: 65 MPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGK 124
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LP+ FLN G GGG+IQ +ASEATLV++L A+ K+I+ Q+ +P LT+ I KLV
Sbjct: 125 MLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLV 184
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
AY+SDQ++SSVE++ +IG V ++ + SD N +R AL A++ D A GLIP ++ATLG
Sbjct: 185 AYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLG 244
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT C+FDNL E+GPIC + +IWLHVDAAYAGSA + PE+ HL G+E+ DSF+FN HKW
Sbjct: 245 TTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKW 304
Query: 754 LLVNFDCSAMW 764
LLVNFDCSAMW
Sbjct: 305 LLVNFDCSAMW 315
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 91/149 (61%), Gaps = 16/149 (10%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
++HWQIPLGRRFR+LK+W R YG+KGLQAY+RKH+ L+ +F LV QD RFE+
Sbjct: 346 YRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVI 405
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
+GLVCFRLK G N +N+A+ RI + K I++V +D+ +RFA
Sbjct: 406 LGLVCFRLK----------------GSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFA 449
Query: 246 ICSSQTEESDVQLGWNEIRTATEEVLRGK 274
ICS E + VQ W I+ +VLR +
Sbjct: 450 ICSRTVESAHVQRAWEHIKELAADVLRAE 478
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust.
Identities = 176/311 (56%), Positives = 231/311 (74%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
EFR GK +D++A+Y++ I R V P VEPGYL L+P P+E + + I+ D+ +I
Sbjct: 5 EFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKII 64
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WLGK
Sbjct: 65 MPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGK 124
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LP+ FLN G GGG+IQ +ASEATLV++L A+ K+I+ Q+ +P LT+ I KLV
Sbjct: 125 MLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLV 184
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
AY+SDQ++SSVE++ +IG V ++ + SD N +R AL A++ D A GLIP ++ATLG
Sbjct: 185 AYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLG 244
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT C+FDNL E+GPIC + +IWLHVDAAYAGSA + PE+ HL G+E+ DSF+FN H W
Sbjct: 245 TTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHXW 304
Query: 754 LLVNFDCSAMW 764
LLVNFDCSAMW
Sbjct: 305 LLVNFDCSAMW 315
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 91/149 (61%), Gaps = 16/149 (10%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
++HWQIPLGRRFR+LK+W R YG+KGLQAY+RKH+ L+ +F LV QD RFE+
Sbjct: 346 YRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVI 405
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
+GLVCFRLK G N +N+A+ RI + K I++V +D+ +RFA
Sbjct: 406 LGLVCFRLK----------------GSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFA 449
Query: 246 ICSSQTEESDVQLGWNEIRTATEEVLRGK 274
ICS E + VQ W I+ +VLR +
Sbjct: 450 ICSRTVESAHVQRAWEHIKELAADVLRAE 478
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/311 (57%), Positives = 240/311 (77%), Gaps = 1/311 (0%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
EF++F K +DFIA+Y++NIRER VLP V+PGYL L+P PE+ E W+ +M+D+ VI
Sbjct: 5 EFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVI 64
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP+F+AYFPT +SYP+IV DMLSGA IGF+W++SPACTELEV++M+WLGK
Sbjct: 65 MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGK 124
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LP EFL CS G GGG+IQ TASE+TLV++L AK K + + +P E+ I KLV
Sbjct: 125 MLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV 184
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
Y SDQ++SSVE++ ++G V +R ++S +N +RG AL A+++D+A+GLIP + TLG
Sbjct: 185 GYCSDQAHSSVERAGLLGGVKLRSVQS-ENHRMRGAALEKAIEQDVAEGLIPFYAVVTLG 243
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT +CAFD L+E GP+ ++N+W+HVDAAYAGSA + PEY HL +G+E DSF+FN H W
Sbjct: 244 TTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHXW 303
Query: 754 LLVNFDCSAMW 764
+LVNFDCSAMW
Sbjct: 304 MLVNFDCSAMW 314
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 89/145 (61%), Gaps = 16/145 (11%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
++HWQIPLGRRFRALKLW LR YG++ LQA++R+H + AK+F DL D RFEL +
Sbjct: 343 YRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEIN 402
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
MGLVCFRLK G N+ N+A+ RI R I++V +D F+R A
Sbjct: 403 MGLVCFRLK----------------GSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMA 446
Query: 246 ICSSQTEESDVQLGWNEIRTATEEV 270
ICS T+ D++ W E+ A +E+
Sbjct: 447 ICSRFTQSEDMEYSWKEVSAAADEM 471
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/311 (55%), Positives = 229/311 (73%)
Query: 454 EFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 513
+FR GK +D++ADY++ I R V P V+PGYL L+P P+E + + I++D+ +I
Sbjct: 5 DFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKII 64
Query: 514 MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
MPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WLGK
Sbjct: 65 MPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGK 124
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
L LPE FL G GGG+IQ +ASEATLV++L A+ K++ Q+ +P LT+ + KLV
Sbjct: 125 MLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLV 184
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
AY SDQ++SSVE++ +IG V ++ + SD +R AL A++ D A GLIP ++ATLG
Sbjct: 185 AYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLG 244
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKW 753
TT C+FDNL E+GPIC E +IWLHVDAAYAGSA + PE+ HL G+E+ DSF+FN HKW
Sbjct: 245 TTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKW 304
Query: 754 LLVNFDCSAMW 764
LLVNFDCSAMW
Sbjct: 305 LLVNFDCSAMW 315
Score = 132 bits (333), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 87/139 (62%), Gaps = 16/139 (11%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
++HWQ+PLGRRFR+LK+W R YG+KGLQAY+RKH+ L+ +F V QD RFE+ +
Sbjct: 346 YRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT 405
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
+GLVCFRLK G + LN+A+ +RI + + I++V + + +RFA
Sbjct: 406 LGLVCFRLK----------------GSDGLNEALLERINSARKIHLVPCRLRGQFVLRFA 449
Query: 246 ICSSQTEESDVQLGWNEIR 264
ICS + E V+L W IR
Sbjct: 450 ICSRKVESGHVRLAWEHIR 468
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 351 bits (901), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 159/313 (50%), Positives = 220/313 (70%), Gaps = 1/313 (0%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTV 512
EE+RE G+ +D+I Y+ +RER V P V+PGYL + +P PE+ + W I D+ +
Sbjct: 9 EEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERI 68
Query: 513 IMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLG 572
IMPG+ HWQSP +AY+P +S+PS++GDML+ A +GF+W SSPACTELE+ VM+WL
Sbjct: 69 IMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLA 128
Query: 573 KALGLPEEFLNCSPGP-GGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
K LGLPE FL+ P GGG++QST SE+TL+++L A++ I ++ P E+ + +
Sbjct: 129 KMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNAR 188
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
LVAY SDQ++SSVEK+ +I V ++ L DDN LRG+AL A++ED +GL+P + AT
Sbjct: 189 LVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCAT 248
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTTG CAFD L ELGPIC +WLH+DAAYAG+A L PE+ +G+EY DSF FN
Sbjct: 249 LGTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPS 308
Query: 752 KWLLVNFDCSAMW 764
KW++V+FDC+ W
Sbjct: 309 KWMMVHFDCTGFW 321
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
F HWQIPL RRFR++KLW +RS+G+K LQA++R +AK F LV D FE+
Sbjct: 350 FMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRH 409
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
+GLV FRLK G N L + V I ++++ + QD+L +RF
Sbjct: 410 LGLVVFRLK----------------GPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFT 453
Query: 246 ICSSQTEESDVQLGWNEIRTATEEVL 271
+ S T D+ WN IR A +L
Sbjct: 454 VTSQFTTRDDILRDWNLIRDAATLIL 479
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 148/330 (44%), Gaps = 23/330 (6%)
Query: 444 ASPVTPPPN--EEFREFGKAAIDFIADYVDNIRER--PVLPSVEPGYLASLVPG---EMP 496
A + P N E+ +F +D + +YV +R VL P L + G E+
Sbjct: 11 ARDLLPAKNGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELS 70
Query: 497 EEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLS 556
+ E I+ D + G+ P+F TG + G+ L+ F++
Sbjct: 71 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEI 129
Query: 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHW 616
+P +E + + + E + S G GI + + + SI+ A+ K
Sbjct: 130 APVFVLMEQITLKKM-------REIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEV 182
Query: 617 QSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLT 673
++K + KLV +TS+QS+ S++K+ G V ++ ++ G +
Sbjct: 183 KTKGMAAVP-----KLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEA 237
Query: 674 AVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEY 733
+ E KG +P + AT GTT AFD ++E+ IC++YN+WLHVDAA+ G L+ ++
Sbjct: 238 KILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKH 297
Query: 734 AHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763
H G+E +S +N H + V CSA+
Sbjct: 298 RHKLNGIERANSVTWNPHXMMGVLLQCSAI 327
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 131 IPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVC--PPSMGL 188
I GR K W+ ++ G G + + K + LA+ ++ + FE+V P
Sbjct: 364 IQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTN 423
Query: 189 VCF 191
VCF
Sbjct: 424 VCF 426
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 148/330 (44%), Gaps = 23/330 (6%)
Query: 444 ASPVTPPPN--EEFREFGKAAIDFIADYVDNIRER--PVLPSVEPGYLASLVPG---EMP 496
A + P N E+ +F +D + +YV +R VL P L + G E+
Sbjct: 8 ARDLLPAKNGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELS 67
Query: 497 EEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLS 556
+ E I+ D + G+ P+F TG + G+ L+ F++
Sbjct: 68 DHPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEI 126
Query: 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHW 616
+P +E + + + E + S G GI + + + SI+ A+ K
Sbjct: 127 APVFVLMEQITLKKM-------REIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEV 179
Query: 617 QSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLT 673
++K + KLV +TS+QS+ S++K+ G V ++ ++ G +
Sbjct: 180 KTKGMAAVP-----KLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEA 234
Query: 674 AVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEY 733
+ E KG +P + AT GTT AFD ++E+ IC++YN+WLHVDAA+ G L+ ++
Sbjct: 235 KILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKH 294
Query: 734 AHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763
H G+E +S +N H + V CSA+
Sbjct: 295 RHKLNGIERANSVTWNPHXMMGVLLQCSAI 324
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 131 IPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVC--PPSMGL 188
I GR K W+ ++ G G + + K + LA+ ++ + FE+V P
Sbjct: 361 IQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTN 420
Query: 189 VCF 191
VCF
Sbjct: 421 VCF 423
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 133/286 (46%), Gaps = 22/286 (7%)
Query: 483 EPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDM 542
EP L L+ E+ +GE + I+ VI + FN F +G ++ G +
Sbjct: 70 EPEELKQLLDLELRSQGESQKQILERCRAVIRYSVKTGHPRFFNQLF-SGLDPHALAGRI 128
Query: 543 LSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATL 602
++ + +++ +P +E V+ L +G G GI S + +
Sbjct: 129 ITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGW---------SSGDGIFCPGGSISNM 179
Query: 603 VSILVAKRKMINHWQSKNPSLTENDIRN--KLVAYTSDQSNSSVEKSAI---IGDVPVRQ 657
++ +A+ + + P + +R L +TS + + S++K A +G VR
Sbjct: 180 YAVNLARYQ-------RYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRV 232
Query: 658 LRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWL 717
+++D+ G + + L + A+G +P + AT GTT AFD LE + +CQ + +WL
Sbjct: 233 VKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWL 292
Query: 718 HVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763
HVDAA+ GS LL + HL G++ DS +N HK L CSA+
Sbjct: 293 HVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSAL 338
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 131 IPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVC 190
+ GRR LKLW+ ++ G +GL+ + + LA+ + +++ + FELV P VC
Sbjct: 376 VQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVC 435
Query: 191 F 191
F
Sbjct: 436 F 436
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 132/295 (44%), Gaps = 20/295 (6%)
Query: 474 RERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGS 533
R V+ P L E+ ++ ++ I+ T + I FN TG
Sbjct: 41 RSTKVIDFHYPNELLQEYNWELADQPQNLEEILMHCQTTLKYAIKTGHPRYFNQ-LSTGL 99
Query: 534 SYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGII 593
+ D L+ F++ +P LE + + + + +G P G G GI
Sbjct: 100 DMVGLAADWLTSTANTNMFTYEIAPVFVLLEYVTLKKMREIIGWP-------GGSGDGIF 152
Query: 594 QSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRN--KLVAYTSDQSNSSVEKSAI-- 649
+ + + ++++A+ KM P + E + +L+A+TS+ S+ S++K A
Sbjct: 153 SPGGAISNMYAMMIARFKMF-------PEVKEKGMAALPRLIAFTSEHSHFSLKKGAAAL 205
Query: 650 -IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGP 708
IG V ++ D+ G + L + E KG +P + AT GTT AFD L +
Sbjct: 206 GIGTDSVILIKCDERGKMIPSDLERRILEAKQKGFVPFLVSATAGTTVYGAFDPLLAVAD 265
Query: 709 ICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAM 763
IC++Y IW+HVDAA+ G L+ ++ G+E +S +N H + V CSA+
Sbjct: 266 ICKKYKIWMHVDAAWGGGLLMSRKHKWKLSGVERANSVTWNPHXMMGVPLQCSAL 320
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 134 GRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVC--PPSMGLVCF 191
GR KLW+ R+ G G +A++ K + LA+ ++++ + +E+V P VCF
Sbjct: 360 GRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAEYLYNIIKNREGYEMVFDGKPQHTNVCF 419
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 117/268 (43%), Gaps = 19/268 (7%)
Query: 503 RHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTE 562
+ ++ D+ ++ Q P A+ T P++ + A SW + + T
Sbjct: 81 KSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLXPAVAAEAXIAALNQSXDSWDQASSATY 140
Query: 563 LEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKR----KMINHWQS 618
+E V+NWL L E+ GI S +++ + +A+ K+ H
Sbjct: 141 VEQKVVNWLCDKYDLSEK--------ADGIFTSGGTQSNQXGLXLARDWIADKLSGHSIQ 192
Query: 619 KNPSLTENDIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAV 675
K L D +KL S +S+ +V+KSA +G+ V + ++ +G L +
Sbjct: 193 K---LGLPDYADKLRIVCSKKSHFTVQKSASWXGLGEKAVXTVDANADGTXDITKLDEVI 249
Query: 676 KEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH 735
+ A+GLIP ++ T GTT A D+L+ + +++ W HVD AY G AL+L +
Sbjct: 250 AQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGG-ALILSSHKS 308
Query: 736 LKRGLEYVDSFDFNTHKWLLVNFDCSAM 763
+G+E S + HK C A+
Sbjct: 309 RLKGVERAHSISVDFHKLFYQTISCGAL 336
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 131 IPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVC 190
I +RF ALK++ T ++ G K L ++ + AD + +D+FEL+ PS+ V
Sbjct: 369 IATTKRFDALKVFXTXQNVGPKALGDXYDHLLAQTLEVADXIRTNDQFELLAEPSLSTVL 428
Query: 191 FRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQ 250
FR D LD +LNKA+ + R + + + + ++F I +
Sbjct: 429 FRATHETAD-LD-----------ELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPC 476
Query: 251 TEESDVQ 257
SD +
Sbjct: 477 LTTSDFE 483
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 27/183 (14%)
Query: 573 KALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKN-PSLTENDIRNK 631
KA+ L LN G I S +EA L ++ R + N W+ K L++N+
Sbjct: 73 KAVALLGSLLNNKDAYGH--IVSGGTEANLXAL----RCIKNIWREKRRKGLSKNEHPKI 126
Query: 632 LVAYTSDQSNSSVEKSAIIGDV-----PVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPC 686
+V T+ + S EK D+ P+++ + D ++ AV++ G+I
Sbjct: 127 IVPITA---HFSFEKGREXXDLEYIYAPIKEDYTIDEKFVK-----DAVEDYDVDGII-- 176
Query: 687 CLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSF 746
GTT DN+EEL I +E NI++HVDAA+ G + + + K+G+ Y F
Sbjct: 177 ---GIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNY--KF 231
Query: 747 DFN 749
DF+
Sbjct: 232 DFS 234
>pdb|3HL2|A Chain A, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
pdb|3HL2|B Chain B, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
pdb|3HL2|C Chain C, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
pdb|3HL2|D Chain D, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
Length = 501
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 665 VLRGDALLTAVK--EDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEYNIWLHV 719
VL GD L T +K E + L P C++ TT A D LEEL IC Y+I V
Sbjct: 192 VLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIV 251
Query: 720 DAAY----AGSALLLPEYAHLKRGLEYVDSFDFN 749
+ AY + L+ + A + R +V S D N
Sbjct: 252 NNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKN 285
>pdb|3NNK|A Chain A, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|B Chain B, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|C Chain C, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|D Chain D, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|E Chain E, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|F Chain F, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|G Chain G, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|H Chain H, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|J Chain J, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|K Chain K, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|L Chain L, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|M Chain M, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|O Chain O, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|P Chain P, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|R Chain R, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|S Chain S, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
Length = 411
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 677 EDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 721
ED K + P L+ G T T L ELG IC+ Y+ + DA
Sbjct: 131 EDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDA 175
>pdb|3ILW|A Chain A, Structure Of Dna Gyrase Subunit A N-Terminal Domain
pdb|3ILW|B Chain B, Structure Of Dna Gyrase Subunit A N-Terminal Domain
Length = 470
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 447 VTPPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLAS 489
+TP E RE + +DFI +Y ++E VLPS P LA+
Sbjct: 104 LTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLAN 146
>pdb|3IFZ|A Chain A, Crystal Structure Of The First Part Of The Mycobacterium
Tuberculosis Dna Gyrase Reaction Core: The Breakage And
Reunion Domain At 2.7 A Resolution
pdb|3IFZ|B Chain B, Crystal Structure Of The First Part Of The Mycobacterium
Tuberculosis Dna Gyrase Reaction Core: The Breakage And
Reunion Domain At 2.7 A Resolution
Length = 508
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 447 VTPPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLAS 489
+TP E RE + +DFI +Y ++E VLPS P LA+
Sbjct: 134 LTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLAN 176
>pdb|1JL0|A Chain A, Structure Of A Human S-Adenosylmethionine Decarboxylase
Self-Processing Ester Intermediate And Mechanism Of
Putrescine Stimulation Of Processing As Revealed By The
H243a Mutant
pdb|1JL0|B Chain B, Structure Of A Human S-Adenosylmethionine Decarboxylase
Self-Processing Ester Intermediate And Mechanism Of
Putrescine Stimulation Of Processing As Revealed By The
H243a Mutant
Length = 334
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 47 EWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVSNGPLKVGGVLRRVYSS 106
++ + ++++ + S RK+F+ P GY R ++I+ LNA NG G + R+ S
Sbjct: 100 DYSGFDSIQSFFYS-RKNFMKPSHQGYPHRNFQEEIEFLNAIFPNG---AGYCMGRMNSD 155
Query: 107 C 107
C
Sbjct: 156 C 156
>pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase Complexed
With Gsk299423 And Dna
pdb|2XCR|D Chain D, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase Complexed
With Gsk299423 And Dna
pdb|2XCR|S Chain S, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase Complexed
With Gsk299423 And Dna
pdb|2XCR|U Chain U, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase Complexed
With Gsk299423 And Dna
Length = 726
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPG 493
E R+ K IDFI +Y N RE VLP+ P LA+ G
Sbjct: 369 ELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASG 409
>pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase
pdb|2XCQ|A Chain A, The 2.98a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase
Length = 726
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPG 493
E R+ K IDFI +Y N RE VLP+ P LA+ G
Sbjct: 369 ELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASG 409
>pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
With Gsk299423 And Dna
pdb|2XCS|D Chain D, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
With Gsk299423 And Dna
pdb|2XCT|B Chain B, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
With Ciprofloxacin And Dna
pdb|2XCT|D Chain D, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
With Ciprofloxacin And Dna
pdb|2XCT|S Chain S, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
With Ciprofloxacin And Dna
pdb|2XCT|U Chain U, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
With Ciprofloxacin And Dna
Length = 692
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPG 493
E R+ K IDFI +Y N RE VLP+ P LA+ G
Sbjct: 335 ELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASG 375
>pdb|1I72|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[n-Methyl-N-(2- Aminooxyethyl)
Amino]adenosine
pdb|1I79|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
5'-Deoxy-5'-[(3-Hydrazinopropyl) Methylamino]adenosine
pdb|1I7B|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Covalently Bound
S-Adenosylmethionine Methyl Ester
pdb|1I7C|A Chain A, Human S-Adenosylmethionine Decarboxylase With Covalently
Bound Pyruvoyl Group And Complexed With Methylglyoxal
Bis-(Guanylhydrazone)
Length = 267
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 47 EWLAYLTLRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVSNGPLKVGGVLRRVYSS 106
++ + ++++ + S RK+F+ P GY R ++I+ LNA NG G + R+ S
Sbjct: 33 DYSGFDSIQSFFYS-RKNFMKPSHQGYPHRNFQEEIEFLNAIFPNG---AGYCMGRMNSD 88
Query: 107 C 107
C
Sbjct: 89 C 89
>pdb|3BC8|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase
pdb|3BCA|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase, Sodium
Iodide Soak
pdb|3BCB|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase, Sodium
Phosphate Soak
Length = 450
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 665 VLRGDALLTAVKEDLAK--GLIP---CCLIATLGTTGTCAFDNLEELGPICQEYNIWLHV 719
VL GD L T +K AK L P CL +T D LEEL IC Y+I V
Sbjct: 174 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVV 233
Query: 720 DAAY----AGSALLLPEYAHLKRGLEYVDSFDFN 749
+ AY + L+ + A + R +V S D N
Sbjct: 234 NNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDXN 267
>pdb|2Z67|A Chain A, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
pdb|2Z67|B Chain B, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
pdb|2Z67|C Chain C, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
pdb|2Z67|D Chain D, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
Length = 456
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 673 TAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPE 732
A+K+++ G PC L +TL D++ E+ IC+ Y+I ++ AYA E
Sbjct: 221 NAIKKEIELGNRPCVL-STLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLE 279
Query: 733 YAHLKRGLEY-VDSFDFNTHKWLL 755
LK+ +Y VD+ ++ K LL
Sbjct: 280 --KLKKAFKYRVDAVVSSSDKNLL 301
>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1
Length = 497
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 701 DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKR--GLEY----VDSFDFNTHKW 753
D++E LG I Q+Y + LHVD+ + E A K L++ V S +THK+
Sbjct: 223 DDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKY 281
>pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 422
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 208 ISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRF 244
+SF D LNK Y+RI++ + YI G + RF
Sbjct: 149 VSFYDESLNKNSYERIVSESLEYIRSGYIFQVVLSRF 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,609,540
Number of Sequences: 62578
Number of extensions: 999329
Number of successful extensions: 1914
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1872
Number of HSP's gapped (non-prelim): 37
length of query: 764
length of database: 14,973,337
effective HSP length: 106
effective length of query: 658
effective length of database: 8,340,069
effective search space: 5487765402
effective search space used: 5487765402
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)