RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13453
(764 letters)
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 457 bits (1177), Expect = e-154
Identities = 174/312 (55%), Positives = 229/312 (73%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTV 512
+FR GK +D++ADY++ I R V P V+PGYL L+P P+E + + I++D+ +
Sbjct: 4 SDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKI 63
Query: 513 IMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLG 572
IMPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WLG
Sbjct: 64 IMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLG 123
Query: 573 KALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632
K L LPE FL G GGG+IQ +ASEATLV++L A+ K++ Q+ +P LT+ + KL
Sbjct: 124 KMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKL 183
Query: 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATL 692
VAY SDQ++SSVE++ +IG V ++ + SD +R AL A++ D A GLIP ++ATL
Sbjct: 184 VAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATL 243
Query: 693 GTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHK 752
GTT C+FDNL E+GPIC E +IWLHVDAAYAGSA + PE+ HL G+E+ DSF+FN HK
Sbjct: 244 GTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHK 303
Query: 753 WLLVNFDCSAMW 764
WLLVNFDCSAMW
Sbjct: 304 WLLVNFDCSAMW 315
Score = 178 bits (453), Expect = 8e-49
Identities = 63/150 (42%), Positives = 91/150 (60%), Gaps = 16/150 (10%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
++HWQ+PLGRRFR+LK+W R YG+KGLQAY+RKH+ L+ +F V QD RFE+ +
Sbjct: 346 YRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT 405
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
+GLVCFRLK G + LN+A+ +RI + + I++V + + +RFA
Sbjct: 406 LGLVCFRLK----------------GSDGLNEALLERINSARKIHLVPCRLRGQFVLRFA 449
Query: 246 ICSSQTEESDVQLGWNEIRTATEEVLRGKS 275
ICS + E V+L W IR E+L +
Sbjct: 450 ICSRKVESGHVRLAWEHIRGLAAELLAAEE 479
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 453 bits (1168), Expect = e-153
Identities = 159/313 (50%), Positives = 220/313 (70%), Gaps = 1/313 (0%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTV 512
EE+RE G+ +D+I Y+ +RER V P V+PGYL + +P PE+ + W I D+ +
Sbjct: 9 EEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERI 68
Query: 513 IMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLG 572
IMPG+ HWQSP +AY+P +S+PS++GDML+ A +GF+W SSPACTELE+ VM+WL
Sbjct: 69 IMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLA 128
Query: 573 KALGLPEEFLNCSP-GPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNK 631
K LGLPE FL+ P GGG++QST SE+TL+++L A++ I ++ P E+ + +
Sbjct: 129 KMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNAR 188
Query: 632 LVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT 691
LVAY SDQ++SSVEK+ +I V ++ L DDN LRG+AL A++ED +GL+P + AT
Sbjct: 189 LVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCAT 248
Query: 692 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTH 751
LGTTG CAFD L ELGPIC +WLH+DAAYAG+A L PE+ +G+EY DSF FN
Sbjct: 249 LGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPS 308
Query: 752 KWLLVNFDCSAMW 764
KW++V+FDC+ W
Sbjct: 309 KWMMVHFDCTGFW 321
Score = 179 bits (455), Expect = 4e-49
Identities = 56/146 (38%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
F HWQIPL RRFR++KLW +RS+G+K LQA++R +AK F LV D FE+
Sbjct: 350 FMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRH 409
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
+GLV FRLK G N L + V I ++++ + QD+L +RF
Sbjct: 410 LGLVVFRLK----------------GPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFT 453
Query: 246 ICSSQTEESDVQLGWNEIRTATEEVL 271
+ S T D+ WN IR A +L
Sbjct: 454 VTSQFTTRDDILRDWNLIRDAATLIL 479
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 452 bits (1164), Expect = e-152
Identities = 179/312 (57%), Positives = 240/312 (76%), Gaps = 1/312 (0%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTV 512
EF++F K +DFIA+Y++NIRER VLP V+PGYL L+P PE+ E W+ +M+D+ V
Sbjct: 4 PEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERV 63
Query: 513 IMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLG 572
IMPG+THW SP+F+AYFPT +SYP+IV DMLSGA IGF+W++SPACTELEV++M+WLG
Sbjct: 64 IMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLG 123
Query: 573 KALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632
K L LP EFL CS G GGG+IQ TASE+TLV++L AK K + + +P E+ I KL
Sbjct: 124 KMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL 183
Query: 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATL 692
V Y SDQ++SSVE++ ++G V +R ++ +N +RG AL A+++D+A+GLIP + TL
Sbjct: 184 VGYCSDQAHSSVERAGLLGGVKLRSVQ-SENHRMRGAALEKAIEQDVAEGLIPFYAVVTL 242
Query: 693 GTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHK 752
GTT +CAFD L+E GP+ ++N+W+HVDAAYAGSA + PEY HL +G+E DSF+FN HK
Sbjct: 243 GTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHK 302
Query: 753 WLLVNFDCSAMW 764
W+LVNFDCSAMW
Sbjct: 303 WMLVNFDCSAMW 314
Score = 181 bits (461), Expect = 6e-50
Identities = 66/147 (44%), Positives = 90/147 (61%), Gaps = 16/147 (10%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
++HWQIPLGRRFRALKLW LR YG++ LQA++R+H + AK+F DL D RFEL +
Sbjct: 343 YRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEIN 402
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
MGLVCFRLK G N+ N+A+ RI R I++V +D F+R A
Sbjct: 403 MGLVCFRLK----------------GSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMA 446
Query: 246 ICSSQTEESDVQLGWNEIRTATEEVLR 272
ICS T+ D++ W E+ A +E+ +
Sbjct: 447 ICSRFTQSEDMEYSWKEVSAAADEMEQ 473
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 417 bits (1073), Expect = e-138
Identities = 83/320 (25%), Positives = 145/320 (45%), Gaps = 21/320 (6%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERP--VLPSVEPGYLASLVPG---EMPEEGEDWRHIMR 507
E+ +F +D + +YV +R VL P L + G E+ + E I+
Sbjct: 19 EQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILV 78
Query: 508 DMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLV 567
D + G+ P+F TG + G+ L+ F++ +P +E +
Sbjct: 79 DCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQIT 137
Query: 568 MNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTEND 627
+ + + +G + G GI + + + SI+ A+ K ++K
Sbjct: 138 LKKMREIVGWSSKD-------GDGIFSPGGAISNMYSIMAARYKYFPEVKTKG-----MA 185
Query: 628 IRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLI 684
KLV +TS+QS+ S++K+ G V ++ ++ G + + E KG +
Sbjct: 186 AVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYV 245
Query: 685 PCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVD 744
P + AT GTT AFD ++E+ IC++YN+WLHVDAA+ G L+ ++ H G+E +
Sbjct: 246 PFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERAN 305
Query: 745 SFDFNTHKWLLVNFDCSAMW 764
S +N HK + V CSA+
Sbjct: 306 SVTWNPHKMMGVLLQCSAIL 325
Score = 152 bits (387), Expect = 8e-40
Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 4/149 (2%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVC--P 183
I GR K W+ ++ G G + + K + LA+ ++ + FE+V
Sbjct: 356 TGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGE 415
Query: 184 PSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDR-LFM 242
P VCF + + + + + ++ + D+ F
Sbjct: 416 PEHTNVCFWYIPQSLRGVPDSPQRREKLH-KVAPKIKALMMESGTTMVGYQPQGDKANFF 474
Query: 243 RFAICSSQTEESDVQLGWNEIRTATEEVL 271
R I + +SD+ EI +++
Sbjct: 475 RMVISNPAATQSDIDFLIEEIERLGQDLH 503
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 405 bits (1042), Expect = e-134
Identities = 68/321 (21%), Positives = 137/321 (42%), Gaps = 16/321 (4%)
Query: 449 PPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPG-EMPEEGEDWRHIMR 507
+ EF + + + ++P L + ++ + + ++
Sbjct: 28 ELGSAEFASVMSHTTSAMKSVFEQVN--APYSGMDPKALEDAINAVDLDNKNAPLKSVID 85
Query: 508 DMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLV 567
D+ ++ Q P A+ T P++ + + A SW + + T +E V
Sbjct: 86 DVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKV 145
Query: 568 MNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPS-LTEN 626
+NWL L E+ GI S +++ + +++A+ + + + L
Sbjct: 146 VNWLCDKYDLSEK--------ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLP 197
Query: 627 DIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGL 683
D +KL S +S+ +V+KSA +G+ V + ++ +G + L + + A+GL
Sbjct: 198 DYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGL 257
Query: 684 IPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV 743
IP ++ T GTT A D+L+ + + ++++W+HVD AY G AL+L + +G+E
Sbjct: 258 IPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGG-ALILSSHKSRLKGVERA 316
Query: 744 DSFDFNTHKWLLVNFDCSAMW 764
S + HK C A+
Sbjct: 317 HSISVDFHKLFYQTISCGALL 337
Score = 164 bits (418), Expect = 7e-44
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
I +RF ALK++MT+++ G K L ++ + AD++ +D+FEL+ PS
Sbjct: 364 LVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPS 423
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
+ V FR + D ++LNKA+ + R + + + + ++F
Sbjct: 424 LSTVLFRAT---HETADL---------DELNKALRLEALTRGIAVLGETIVDGKTALKFT 471
Query: 246 ICSSQTEESDVQLGWNEIRTATEEVL 271
I + SD + ++I E++
Sbjct: 472 ILNPCLTTSDFESLLSKINMLAVELV 497
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 401 bits (1032), Expect = e-132
Identities = 81/339 (23%), Positives = 144/339 (42%), Gaps = 21/339 (6%)
Query: 432 SDLIINSIPLTKASPVTPPPNEEFREFGKAAIDFIADYV---DNIRERPVLPSVEPGYLA 488
+L S+ ++A P +A + D + V EP L
Sbjct: 16 ENLYFQSMADSEALPSLAGDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELK 75
Query: 489 SLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFG 548
L+ E+ +GE + I+ VI + P+F +G ++ G +++ +
Sbjct: 76 QLLDLELRSQGESQKQILERCRAVIRYSVKTG-HPRFFNQLFSGLDPHALAGRIITESLN 134
Query: 549 LIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVA 608
+++ +P +E V+ L +G G GI S + + ++ +A
Sbjct: 135 TSQYTYEIAPVFVLMEEEVLRKLRALVGWSS---------GDGIFCPGGSISNMYAVNLA 185
Query: 609 KRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDNGV 665
+ + + + L +TS + + S++K A +G VR +++D+ G
Sbjct: 186 RYQRYPDCKQRGL-----RTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGK 240
Query: 666 LRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAG 725
+ + L + A+G +P + AT GTT AFD LE + +CQ + +WLHVDAA+ G
Sbjct: 241 MVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGG 300
Query: 726 SALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764
S LL + HL G++ DS +N HK L CSA+
Sbjct: 301 SVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALL 339
Score = 154 bits (391), Expect = 4e-40
Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 6/148 (4%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
+ GRR LKLW+ ++ G +GL+ + + LA+ + +++ + FELV P
Sbjct: 371 TGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPE 430
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGD--NDLNKAVYDRIIARKVIYIVKGSFQDRL-FM 242
VCF L + + + + + + +R++ + I R F
Sbjct: 431 FVNVCFWFV---PPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFF 487
Query: 243 RFAICSSQTEESDVQLGWNEIRTATEEV 270
R + +S +D+ NE+ +++
Sbjct: 488 RVVVANSALTCADMDFLLNELERLGQDL 515
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 123 bits (310), Expect = 6e-30
Identities = 45/283 (15%), Positives = 99/283 (34%), Gaps = 39/283 (13%)
Query: 494 EMPEEGEDWRHIMRDMNTVI-MPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGF 552
++P G ++ ++N + + T W+ + + G + + + A+
Sbjct: 37 QLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHG---GDDLIHLQTIAYEKYCV 93
Query: 553 SWL----SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVA 608
+ PA ++E V++ + + P + G G S +E+ L++ L A
Sbjct: 94 ANQLHPDVFPAVRKMESEVVSMVLRMFNAPSD-------TGCGTTTSGGTESLLLACLSA 146
Query: 609 KRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLR 667
K ++H P + +++ +K+A + +R + D +
Sbjct: 147 KMYALHHRGITEPEI-----------IAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVD 195
Query: 668 GDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAG-- 725
+ + ++ L+ + D++E LG I Q+Y + LHVD+
Sbjct: 196 LGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFI 249
Query: 726 ----SALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764
L + V S +THK+ S +
Sbjct: 250 VSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIM 292
Score = 56.1 bits (135), Expect = 3e-08
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 135 RRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQD-DRFELVCPPSMGLVCFRL 193
+ W T+ + G G ++ + A KF ++++ +++ P ++ F
Sbjct: 324 PGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSS 383
Query: 194 K 194
K
Sbjct: 384 K 384
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 121 bits (306), Expect = 3e-29
Identities = 45/315 (14%), Positives = 97/315 (30%), Gaps = 33/315 (10%)
Query: 455 FREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIM 514
+ A D D++ ++R + A L P G I+ ++ +
Sbjct: 36 IQSQPPARRDPTMDWLASLRSQIKPYRDRFPSHARL-----PRAGLPRAEILAEIAAMGA 90
Query: 515 PGITHWQSPQFNAY-FPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGK 573
W+ + + + + + ++ + P+ + E V+
Sbjct: 91 AESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAH 150
Query: 574 ALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLV 633
LG + G G + S +E+ L+++ + P
Sbjct: 151 MLGGDA-----AGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEA---------- 195
Query: 634 AYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLG 693
++++ +K+A + + + D + A+ A+ + + +
Sbjct: 196 -VVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPN------TVVVAGSAP 248
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLK-----RGLEYVDSFDF 748
D + E+ + E+ I HVDA G L E LE V S
Sbjct: 249 GYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSA 308
Query: 749 NTHKWLLVNFDCSAM 763
+THK+ S +
Sbjct: 309 DTHKYGYGAKGTSVI 323
Score = 57.6 bits (139), Expect = 1e-08
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Query: 135 RRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLK 194
+ W + S G +G R+ + A + V +++ P L +
Sbjct: 356 PGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP---LWVIAVA 412
Query: 195 VRFWDKLD 202
+
Sbjct: 413 SDELNIYQ 420
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 118 bits (297), Expect = 1e-28
Identities = 47/282 (16%), Positives = 91/282 (32%), Gaps = 39/282 (13%)
Query: 493 GEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLS------GA 546
++PE G D I + + M +Y I ++ S G
Sbjct: 56 RKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGERE-ARTYSKIHEELSSGFCHGIGR 114
Query: 547 FGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSIL 606
G + + + + L L I ++ ++ L
Sbjct: 115 SGNLVDPQPKASGASIMYALTNKILESFFKQL-------GLNVHAIATPISTGMSISLCL 167
Query: 607 VAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSDDN 663
A RK + +V Y S+ S K+ + V + D
Sbjct: 168 SAARK---------------KYGSNVVIY-PYASHKSPIKAVSFVGMNMRLVETVLDGDR 211
Query: 664 GVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAY 723
+ + + A+K+++ G PC +++TL D++ E+ IC+ Y+I ++ AY
Sbjct: 212 VYVPVEDIENAIKKEIELGNRPC-VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY 270
Query: 724 AGSALLLPEYAHLKRGL--EYVDSFDFNTHKWLLVNFDCSAM 763
A+ Y + VD+ ++ K LL +
Sbjct: 271 ---AIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLV 309
Score = 46.6 bits (110), Expect = 2e-05
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 117 RTTVLFHFLFQHWQIPLGRRF--RALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQ 174
+ + GR + ++L S G K ++ + K +L+
Sbjct: 312 TDAEFIKEISLSYP---GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND 368
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 113 bits (285), Expect = 3e-27
Identities = 54/271 (19%), Positives = 96/271 (35%), Gaps = 34/271 (12%)
Query: 495 MPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSW 554
M E+G + I+ ++ ++ + I ++
Sbjct: 5 MQEKGVSEKEILEELKKYRSLD-LKYEDGNIFGSMCSN--VLPITRKIVDIFLETNLGDP 61
Query: 555 LSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMIN 614
LE + LG L + G I S +EA L+++ K N
Sbjct: 62 GLFKGTKLLEEKAVALLGSLLNNKD---------AYGHIVSGGTEANLMALRCIK----N 108
Query: 615 HWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTA 674
W+ K + K++ ++ S EK + D+ ++ + + A
Sbjct: 109 IWREKRRKGLSKNEHPKIIV--PITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDA 166
Query: 675 VKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYA 734
V++ +I GTT DN+EEL I +E NI++HVDAA+ G + +
Sbjct: 167 VEDY-----DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDK 221
Query: 735 HLKRGLEYVDSFDFN---------THKWLLV 756
+ K+G+ Y FDF+ HK
Sbjct: 222 YKKKGVNYK--FDFSLGVDSITIDPHKMGHC 250
Score = 48.5 bits (116), Expect = 5e-06
Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 136 RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLK 194
F + LR G +G + + + + +++++ F+ V P + +V +
Sbjct: 289 GFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENN-FKPVIEPILNIVAIEDE 346
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 89.3 bits (221), Expect = 8e-19
Identities = 54/278 (19%), Positives = 100/278 (35%), Gaps = 28/278 (10%)
Query: 494 EMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFS 553
+MPE + +N +M +P+ N + ++ +
Sbjct: 31 KMPENSIPKEAAYQIINDELMLDG----NPRLNLASFVTTWMEPECDKLIMSSINKNYVD 86
Query: 554 WLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMI 613
P TEL+ +N + P E G+ +SEA +++ L KRK
Sbjct: 87 MDEYPVTTELQNRCVNMIAHLFNAPLE----EAETAVGVGTVGSSEAIMLAGLAFKRKWQ 142
Query: 614 NHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNG-VLRGDALL 672
N +++ + + +I T EK A +V +++++ + V+ +
Sbjct: 143 NKRKAEGKPVDKPNI------VTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAV 196
Query: 673 TAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN------IWLHVDAAYAGS 726
V E+ C+ A LG+T F++++ L + E N +HVDAA G
Sbjct: 197 DMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGF 250
Query: 727 ALLLPEYAHLKR-GLEYVDSFDFNTHKWLLVNFDCSAM 763
L V S + + HK+ LV +
Sbjct: 251 IAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWV 288
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 80.8 bits (199), Expect = 3e-16
Identities = 39/216 (18%), Positives = 71/216 (32%), Gaps = 33/216 (15%)
Query: 558 PACTELEVLVMNWLGKALGLPEEFLNCSPGPG--GGIIQSTASEATLVSILVAKRKMINH 615
P +++ +N + P + G G SE + ++ M
Sbjct: 77 PQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS------SE----ACMLGGMAMKWR 126
Query: 616 WQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTA 674
W+ + + + + LV K A DV +R++ + ++ A
Sbjct: 127 WRKRMEAAGKPTDKPNLVCGPV---QICWHKFARYWDVELREIPMRPGQLFMDPKRMIEA 183
Query: 675 VKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN------IWLHVDAAYAGSAL 728
E+ ++ T G T T ++ + L ++ I +H+DAA G
Sbjct: 184 CDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG--F 235
Query: 729 LLPEYAHLKR---GLEYVDSFDFNTHKWLLVNFDCS 761
L P A L V S + HK+ L C
Sbjct: 236 LAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCG 271
Score = 37.2 bits (86), Expect = 0.016
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 139 ALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCP--PSMGL--VCFRLK 194
+ + G +G +A AD + + +E +C P G+ VCF+LK
Sbjct: 310 VIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLK 369
Query: 195 VRFWDKLD 202
Sbjct: 370 DGEDPGYT 377
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 74.7 bits (183), Expect = 8e-14
Identities = 99/630 (15%), Positives = 177/630 (28%), Gaps = 208/630 (33%)
Query: 4 RSLIPKLAYPSETLSLLI-----------YESFKATHSLSGTPDQVRLSGLPDS------ 46
R L L++ S LL+ E F L + P +
Sbjct: 7 RPLT--LSHGSLEHVLLVPTASFFIASQLQEQFNKI--LPEPTEGFAADDEPTTPAELVG 62
Query: 47 EWLAYLT--------------LRTIYESFRKSFLCPMCSGYCGRTLHQDIQSLNAPVSNG 92
++L Y++ L F +L G +H L
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE-------GNDIHALAAKLLQENDTT 115
Query: 93 PLKVGGVLRRVYSSC-LVPRGQKSLRTTVLFH---------F-LF--QHWQIPLG---RR 136
+K +++ ++ + R + LF +F Q G
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ------GNTDDY 169
Query: 137 FRAL-KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSMGLVCFRLKV 195
F L L+ T + ++ A+ ++L+ E V L +
Sbjct: 170 FEELRDLYQTYHVL----VGDLIKFS---AETLSELIRTTLDAEKVFTQG-------LNI 215
Query: 196 RFWDKLDNLFGTISFGDND-LNKAVYDRIIARKVIYIVKGSFQDRLFMRFAI-CSSQTEE 253
W L + D D L I+ +I ++ Q + +
Sbjct: 216 LEW-----LENPSNTPDKDYLLSIP----ISCPLIGVI----Q---LAHYVVTA------ 253
Query: 254 SDVQLGWN--EIRTATEEVLRGKSLGPAGKVMGGAQAIAGTESS--GPADQVL------G 303
LG+ E+R L+G + G V A A + S + + G
Sbjct: 254 --KLLGFTPGELR----SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 304 -EIQPVARAESLGPVDELMGDVQAIAGGKNSGPVETVLNSDTPQEVRSEDTPLGGVLGEE 362
SL P ++ D ++ + P +P+ +
Sbjct: 308 VRCYEAYPNTSLPP--SILED--SLENNEG-----------VP-------SPMLSIS--- 342
Query: 363 SSGGCGQQKLTPPVAKPLTVQGPVNPVDRSMNKAPPPYSIAIPLLDHNEVPGNKSF--RG 420
Q+++ V K N + P + I L N G K+ G
Sbjct: 343 ---NLTQEQVQDYVNK-------TN------SHLPAGKQVEISL--VN---GAKNLVVSG 381
Query: 421 HSENLITLIIA-------SDLIINSIPLTKAS--------PVTPPPNEEFREFGKAAIDF 465
++L L + S L + IP ++ PV P F
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP----FHS------HL 431
Query: 466 IADYVDNIRERPVLPSVE--PGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGIT----H 519
+ D I + V +V + +P +G D R + ++ I+ I
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQ--IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 520 WQ-SPQFNAY----FPTGSSYPSIVGDMLS 544
W+ + QF A F G + S +G +
Sbjct: 490 WETTTQFKATHILDFGPGGA--SGLGVLTH 517
Score = 48.1 bits (114), Expect = 1e-05
Identities = 55/389 (14%), Positives = 106/389 (27%), Gaps = 141/389 (36%)
Query: 446 PVTPPPNEEFREFGKAAIDFIADYVDNIRE---RPVLPSV----EPGYLA-----SLV-- 491
P TP E +F + +++ V+ + VL E YL +L
Sbjct: 54 PTTPA--ELVGKF----LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 492 -PGEMPEEGEDWRHIMRD----MNTVIMPGITHWQSPQFNA------------------- 527
E + ++++ P S F A
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 528 -YFP----TGSSYPSIVGDMLSGAFGLIGFSWLSSPACTEL--EVL-VMNWLGKALGLP- 578
YF +Y +VGD++ + + ++ ++ + L ++ WL P
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 579 EEFLNCSP--GPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636
+++L P P G+IQ L +V + + T ++R+ L T
Sbjct: 228 KDYLLSIPISCPLIGVIQ-------LAHYVVTAKLL---------GFTPGELRSYLKGAT 271
Query: 637 S---------------------DQSNSSVEKSAIIG-----DVPVRQLRSDDNGVLRGDA 670
++ IG P L
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP---------- 321
Query: 671 LLTAVKEDLAKGL-IPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALL 729
+ +++ L +P +++ T E++ + N H
Sbjct: 322 --SILEDSLENNEGVPSPMLSISNLT-------QEQVQDYVNKTN--SH----------- 359
Query: 730 LPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758
LP ++ L N K N
Sbjct: 360 LPAGKQVEISL-------VNGAK----NL 377
Score = 45.0 bits (106), Expect = 9e-05
Identities = 50/313 (15%), Positives = 86/313 (27%), Gaps = 118/313 (37%)
Query: 198 WDKLDNLFGTISFG--------DNDLNKAVY-----DRIIARKVIYIVKGSFQDRLFMRF 244
W++ DN F ++G +N +N ++ + I ++ + D
Sbjct: 1646 WNRADNHFKD-TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 245 AICSSQTEESDVQLGW---NEIRTATE--------------EVLRGKSLGPAGKVMGGAQ 287
I E S + + +AT+ E L+ K L PA
Sbjct: 1705 KIFKEINEHST-SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF---- 1759
Query: 288 AIAGTESSGPADQVLGE---IQPVARAESL------------G-------PVDELMGDVQ 325
AG S LGE + + A+ + G P DEL
Sbjct: 1760 --AG-HS-------LGEYAAL--ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 326 AIAGGKNSGPVETVLNSDTPQEVRSEDTPLGGVLGEESSGGCGQQKLTPPVAKPLTVQGP 385
+ N G V + + Q V +G+ + V+
Sbjct: 1808 GMI-AINPGRVAASFSQEALQYVVER-------VGKRTGW---------------LVE-I 1843
Query: 386 VNPVDRSMNKAPPPYSIAIPLLDHNEVPGNKSFRGHSENLITLI-IASDLIINSIPLTKA 444
VN N Y A G L T+ + + + + I + +
Sbjct: 1844 VN-----YNVENQQYVAA----------------GDLRALDTVTNVLNFIKLQKIDIIEL 1882
Query: 445 SPVTPPPNEEFRE 457
+ EE
Sbjct: 1883 -QKSLSL-EEVEG 1893
Score = 30.8 bits (69), Expect = 2.0
Identities = 22/118 (18%), Positives = 34/118 (28%), Gaps = 47/118 (39%)
Query: 15 ETLSLLIYESFKATHSLSGT----PDQVRLSGLPDSEWLAYLTL-RTIYESFRKSFLCPM 69
E + + S K LS T P A + + +E + L P
Sbjct: 1712 EHSTSYTFRSEKGL--LSATQFTQP--------------ALTLMEKAAFEDLKSKGLIPA 1755
Query: 70 CSGYCGRTLHQDIQSL---NAPVSNGPLKVGGVL-----------RRVYSSCLVPRGQ 113
+ + G H SL A S + V+ R + VPR +
Sbjct: 1756 DATFAG---H----SLGEYAALAS-----LADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Score = 29.6 bits (66), Expect = 4.6
Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 38/122 (31%)
Query: 401 SIAI--PLLDHNEVPGNKSFRGHS--E--------NLITLIIASDLIINSIPLT----KA 444
A L +P + +F GHS E +++++ L + +
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI---ESL----VEVVFYRGMT 1792
Query: 445 SPVTPPPNEEFRE-FGKAAID-------FIADYVDNIRERPVLPSVEPGYLASLV----P 492
V P +E R +G AI+ F + + + ER G+L +V
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER---VGKRTGWLVEIVNYNVE 1849
Query: 493 GE 494
+
Sbjct: 1850 NQ 1851
Score = 28.9 bits (64), Expect = 8.0
Identities = 51/294 (17%), Positives = 83/294 (28%), Gaps = 99/294 (33%)
Query: 441 LTKASPVTPPPNEEFRE-FGKAAIDFIADY----VDNIRERPVLPSVEPGYLASLVPGEM 495
L K S ++ + +A F Y +D + PV ++ G
Sbjct: 1635 LYKTSKA-------AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG---------- 1677
Query: 496 PEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWL 555
E+G+ R M + F +SY GL+ +
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY------TFRSEKGLLSATQF 1731
Query: 556 SSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINH 615
+ PA T +E L G+I + A+ A H
Sbjct: 1732 TQPALTLMEKAAFEDLKSK----------------GLIPADATFA-------------GH 1762
Query: 616 WQSKNPSLTENDIRNKLVAYTSDQSNS-SVEKSAIIGDVPVRQLRSDDNGVLRGDALLTA 674
SL E L + ++ S+E S + +V V RG + A
Sbjct: 1763 ------SLGEY---AALASL----ADVMSIE-SLV--EV-VFY---------RGMTMQVA 1796
Query: 675 VKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQE-------------YNI 715
V D G +IA + A + E L + + YN+
Sbjct: 1797 VPRD-ELGRSNYGMIA-INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.3 bits (153), Expect = 2e-10
Identities = 110/634 (17%), Positives = 178/634 (28%), Gaps = 226/634 (35%)
Query: 191 FRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQ 250
F D D +S K D II K V G+ RLF + + S Q
Sbjct: 29 FVDNFDCKDVQDMPKSILS-------KEEIDHIIMSK--DAVSGT--LRLF--WTLLSKQ 75
Query: 251 TEESDVQLGWNEIRTATEEVLRG--KSLGPAGKVMGGAQAIAGTESSGPADQVLGEIQPV 308
++ EEVLR K L I TE P+ I+
Sbjct: 76 E---------EMVQKFVEEVLRINYKFL---------MSPIK-TEQRQPSMMTRMYIEQR 116
Query: 309 ARAESLGPVDELMGDVQAIAGGKNSGP-VETVLNSDTPQEVRSEDTPLGGVL--GEESSG 365
D L D Q A K + ++ L ++ E P VL G
Sbjct: 117 ---------DRLYNDNQVFA--KYNVSRLQPYLKL---RQALLELRPAKNVLIDG---VL 159
Query: 366 GCGQQKLTPPVAKPLTVQGPVNPVDR----SMNKAPPPYSIAIPL--LDHNEVPGNKSFR 419
G G+ + V VQ + ++ P ++ L L + P S
Sbjct: 160 GSGKTWVALDVCLSYKVQ--CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 420 GHSENLITLIIASDLIINSIPLTKASPVTPPPNEEFREFGKAAIDFIADYVDNIRERPVL 479
HS N+ L I+SI E R ++ +P
Sbjct: 218 DHSSNIK-------LRIHSI------------QAELRRL--------------LKSKP-- 242
Query: 480 PSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPQFNAYFPTG------S 533
Y L+ ++ + V + +NA F +
Sbjct: 243 ------YENCLL-------------VLLN---V-------QNAKAWNA-FNLSCKILLTT 272
Query: 534 SYPSIVGDMLSGA----FGLIGFSWLSSPACTELEVLVMNWLG-KALGLPEEFLNCSPGP 588
+ + D LS A L S +P E++ L++ +L + LP E L +P
Sbjct: 273 RFKQVT-DFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTNP-- 327
Query: 589 GGGIIQSTASEATLVSILVAK-RKMINHWQ-SKNPSLTENDIRNKLVAYTSDQSNSSVEK 646
+SI+ R + W K+ D+ + +E
Sbjct: 328 ------------RRLSIIAESIRDGLATWDNWKH--------------VNCDKLTTIIES 361
Query: 647 SAIIGDVPVRQLRSDDN-------GVLRGDALLTA-------------VKEDLAKGLIPC 686
S + L + V A + + L
Sbjct: 362 S-------LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 687 CLIATLGTTGTCAFDNL--EELGPICQEYNIWLH---VDA-----AYAGSALLLPE---- 732
L+ T + ++ E + EY LH VD + L+ P
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYA--LHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 733 ------YAHLKRGLEYVDSFD-FNTHKWLLVNFD 759
+ HLK +E+ + F + ++F
Sbjct: 473 FYSHIGH-HLK-NIEHPERMTLFRM---VFLDFR 501
Score = 48.7 bits (115), Expect = 7e-06
Identities = 56/408 (13%), Positives = 111/408 (27%), Gaps = 102/408 (25%)
Query: 406 LLDHNEVPGNKSFR-GHSENLITLIIAS---DLIINSIPLTKASPVTPPPNEEFREFGKA 461
+L E +F +++ I++ D II S
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS----------KDAVSGTLRL--- 67
Query: 462 AIDFIADYVDNIRERPVLPSVEPGY--LASLV------PGEMPEEGEDWRHIMRDMNTVI 513
+ + + ++ V + Y L S + P M + R + + N V
Sbjct: 68 -FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 514 MPGITHWQSPQFNAYFPTG----SSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMN 569
+ Q +++ + G G G +W++ C +V
Sbjct: 127 AKY--NVSRLQPYLKLRQALLELRPAKNVL---IDGVLG-SGKTWVALDVCLSYKVQCKM 180
Query: 570 -----WLGKALGL---PEEFLN-----C---SPGPGGGIIQSTASEATLVSILVAKRKMI 613
WL L PE L P S+ + + SI R+++
Sbjct: 181 DFKIFWLN--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 614 NHWQSKNPSLTENDIRNK------------LVAYTSDQSNSSVEKSAIIGDVPVRQLRSD 661
+N L +++N L+ T + + +A + +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSM- 296
Query: 662 DNGVLRGDAL------LTAVKEDL---AKGLIP--CCLIATLGTTGTCAFDNLEELGPIC 710
+ + L +DL P +IA G +DN
Sbjct: 297 --TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-------- 346
Query: 711 QEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNF 758
W HV+ + ++ L ++ ++ L F
Sbjct: 347 -----WKHVNCDKLTTI--------IESSLNVLEPAEYRKMFDRLSVF 381
Score = 42.1 bits (98), Expect = 8e-04
Identities = 91/668 (13%), Positives = 169/668 (25%), Gaps = 233/668 (34%)
Query: 59 ESFRKSFLCPMCSGYCGRTLHQDIQSLNAPV-SNGP----LKVGGVLRRVYS--SCLVPR 111
++F +F C +D+Q + + S + + L+ +
Sbjct: 27 DAFVDNFDC------------KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 112 GQKSLRT---TVL---FHFLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLA 165
++ ++ VL + FL + + ++++ R Q + + ++S
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 166 KKFADL---VEQDDRFELVCPPSMG---------LVCFRLKVR-------FW-------- 198
+ + L + + + V + VC KV+ FW
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 199 -----DKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFAICSSQTEE 253
+ L L I + + I + S Q L R + S E
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSN-------IKLRIHSIQAEL--RRLLKSKPYEN 245
Query: 254 S-----DVQLGWNEIRTATEEVLRGKSLGPAGKVMGGAQAIAGTESSGPADQVLG----E 304
+V N + +L + + T D +
Sbjct: 246 CLLVLLNV---QN------AKAWNAFNL--------SCKILLTTRFKQVTDFLSAATTTH 288
Query: 305 IQPVARAESLGPVDELMGDVQAIAGGKNSGPVETVLNSDTPQEVRSEDTPLG-GVLGEES 363
I + +L P DE+ + + D P+EV + + P ++ E
Sbjct: 289 ISLDHHSMTLTP-DEVKSLLLKYLDCR---------PQDLPREVLTTN-PRRLSIIAESI 337
Query: 364 SGGC---------GQQKLTPPVAKPLTVQGP----------------VN-P--------- 388
G KLT + L V P + P
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 389 --------------VDRSM-NKAPPPYSIAIPLLDHNEVPGNKSFRGHSENLITLIIASD 433
S+ K P +I+IP + + EN L
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-------LELKVKLENEYAL---HR 447
Query: 434 LIINSIPLTKASPVTPPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLAS---- 489
I++ + K + D I Y+D Y S
Sbjct: 448 SIVDHYNIPKTF----DSD-----------DLIPPYLDQ-------------YFYSHIGH 479
Query: 490 -LVPGEMPEEGEDWRHIMRDM----NTVIMPGITHWQSP--------QFNAY----FPTG 532
L E PE +R + D + T W + Q Y
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS-TAWNASGSILNTLQQLKFYKPYICDND 538
Query: 533 SSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGI 592
Y +V +L I + + S L + +M I
Sbjct: 539 PKYERLVNAILDFLPK-IEENLICSKYTDLLRIALMA------------------EDEAI 579
Query: 593 IQSTASEA 600
+ +
Sbjct: 580 FEEAHKQV 587
Score = 35.6 bits (81), Expect = 0.076
Identities = 48/311 (15%), Positives = 91/311 (29%), Gaps = 92/311 (29%)
Query: 13 PSETLSLLIYESFKATH-SLSGTPDQVRLSGLPDSEWLAYLTLRTIYESFR------KSF 65
P E SLL+ K P +V L+ P L I ES R ++
Sbjct: 300 PDEVKSLLL----KYLDCRPQDLPREV-LTTNP-------RRLSIIAESIRDGLATWDNW 347
Query: 66 LCPMCSGYCGRTLHQDIQ-SLNA--PVSNGPLKVGGVLRRVYSSCLV-PRGQKSLRTTVL 121
C L I+ SLN P R+++ V P + T +L
Sbjct: 348 KHVNCD-----KLTTIIESSLNVLEP---------AEYRKMFDRLSVFPPSAH-IPTILL 392
Query: 122 FHFLFQHWQIPLGR----------RFRALKLWMTLRSYGLKGLQAYLRKHI----SLAKK 167
W + ++ ++ + + + L+ + +L +
Sbjct: 393 SLI----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 168 FADLVEQDDRFELVCPPSMGLVCFRLKVRFWDKLDN---------LFGTISFGDNDLNKA 218
+V+ + + + LD L L +
Sbjct: 449 ---IVDHYNIPKTFDSDDLIP----------PYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 219 VY-D-RIIARKVIYI-----VKGS----FQD-RLFMRFAICSSQTE-ESDVQLGWNEIRT 265
V+ D R + +K+ + GS Q + + + IC + + E V + +
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-ICDNDPKYERLVNAILDFLPK 554
Query: 266 ATEEVLRGKSL 276
E ++ K
Sbjct: 555 IEENLICSKYT 565
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 52.3 bits (125), Expect = 3e-07
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 5/122 (4%)
Query: 643 SVEKSAIIGD---VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCA 699
S KS + V + + D A+ ++E + + CL +T
Sbjct: 156 SCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHI--LCLHSTTACFAPRV 213
Query: 700 FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759
D LEEL IC Y+I V+ AY + + +D+F + K +V
Sbjct: 214 PDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVG 273
Query: 760 CS 761
+
Sbjct: 274 GA 275
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 51.6 bits (123), Expect = 7e-07
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 5/122 (4%)
Query: 643 SVEKSAIIGD---VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCA 699
S KS I V + + D A+ V+E + C+ +T
Sbjct: 174 SCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCI--LCIHSTTSCFAPRV 231
Query: 700 FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFD 759
D LEEL IC Y+I V+ AY + + +D+F + K +V
Sbjct: 232 PDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVG 291
Query: 760 CS 761
+
Sbjct: 292 GA 293
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 49.0 bits (116), Expect = 4e-06
Identities = 37/246 (15%), Positives = 76/246 (30%), Gaps = 47/246 (19%)
Query: 531 TGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGG 590
T + M++G G S +L+ +P
Sbjct: 54 TNAMSDHQWAAMITGDEAYAG-----SRNYYDLKDKAKELFNYDYIIP------------ 96
Query: 591 GIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEK---- 646
Q +E L +L+ + Q + + I N + D + + VE
Sbjct: 97 -AHQGRGAENILFPVLLK------YKQKEGKAKNPVFISN----FHFDTTAAHVELNGCK 145
Query: 647 --SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF--DN 702
+ + + D G L + + A ++ T + G N
Sbjct: 146 AINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSN 205
Query: 703 LEELGPICQEYNIWLHVDAAYAGSALLL-----PEYAH------LKRGLEYVDSFDFNTH 751
L+E+ I +++ I++ +D+A P+Y + + +Y D+ +
Sbjct: 206 LKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAK 265
Query: 752 KWLLVN 757
K L+N
Sbjct: 266 KDPLLN 271
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 42.7 bits (100), Expect = 4e-04
Identities = 35/218 (16%), Positives = 67/218 (30%), Gaps = 36/218 (16%)
Query: 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHW 616
S + L V N G +P Q +E + +L+ KR+
Sbjct: 73 SRSYYALAESVKNIFGYQYTIP-------------THQGRGAEQIYIPVLIKKREQEKGL 119
Query: 617 QSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPV-RQLRSDDNGVLRGDALLTAV 675
N + + + + +R D G + L +
Sbjct: 120 DRSKMVAFSNYFFDTTQGH---SQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI 176
Query: 676 KEDLAKGLIPCCLIATLGTTGTCA-----FDNLEELGPICQEYNIWLHVDAA-YAGSALL 729
+E G I T+ + NL+ + I ++Y+I + +D+A +A +A
Sbjct: 177 EEV---GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYF 233
Query: 730 L----PEYAH------LKRGLEYVDSFDFNTHKWLLVN 757
+ EY + +Y D + K +V
Sbjct: 234 IKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP 271
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 38.9 bits (90), Expect = 0.005
Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 13/124 (10%)
Query: 647 SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAF--DNLE 704
+ + L G + L + E A+ + CL T+ G N+
Sbjct: 139 DIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMR 198
Query: 705 ELGPICQEYNIWLHVDAA-YAGSALLL----PEYAH------LKRGLEYVDSFDFNTHKW 753
+ + + + I + DA +A + + + + Y D + K
Sbjct: 199 AVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKD 258
Query: 754 LLVN 757
LVN
Sbjct: 259 CLVN 262
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 35.0 bits (81), Expect = 0.084
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 653 VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT-----LGTTGTCAFDNLEELG 707
+P+ S +N + A+ A + + LI T LGTT D L+ +
Sbjct: 158 IPI-HCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTT--LDKDTLKSVL 214
Query: 708 PICQEYNIWLHVDAAYAGS 726
++NI L D YA +
Sbjct: 215 SFTNQHNIHLVCDEIYAAT 233
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 35.0 bits (81), Expect = 0.090
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 653 VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIAT-----LGTTGTCAFDNLEELG 707
VP+ S + + AL A +E + L ++ T LGTT + L L
Sbjct: 161 VPI-HCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTT--MTRNELYLLL 217
Query: 708 PICQEYNIWLHVDAAYAGS 726
++ I L D Y+G+
Sbjct: 218 SFVEDKGIHLISDEIYSGT 236
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 34.8 bits (81), Expect = 0.11
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 703 LEELGPICQEYNIWLHVDAAYA 724
+ +G +C+ I HVDA +
Sbjct: 182 IAAIGEMCRARGIIYHVDATQS 203
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 33.4 bits (77), Expect = 0.23
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 14/62 (22%)
Query: 695 TGTC-AFDNLEELGPICQEYNIWLHVD-------AAYAGSALLLPEYAHLKRGLEYVDSF 746
GT LE++ C+E+ ++L +D + + L L + A D F
Sbjct: 157 VGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIA------RLTDMF 210
Query: 747 DF 748
Sbjct: 211 YI 212
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 31.8 bits (73), Expect = 0.89
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 14/61 (22%)
Query: 696 GTC-AFDNLEELGPICQEYNIWLHVD-------AAYAGSALLLPEYAHLKRGLEYVDSFD 747
G+ D +E +G +C+ ++ LH+D G + + VD+
Sbjct: 154 GSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWK------AGVDALS 207
Query: 748 F 748
F
Sbjct: 208 F 208
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NAD binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 31.2 bits (71), Expect = 1.3
Identities = 13/54 (24%), Positives = 20/54 (37%)
Query: 440 PLTKASPVTPPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPG 493
T +P P +EE R+FG+ V++ R V G + G
Sbjct: 289 GSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQG 342
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase,
homodimer, rossman fold, 4 domai L-histidine
biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A
{Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A*
1kar_A
Length = 434
Score = 31.0 bits (71), Expect = 1.5
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Query: 283 MGGAQAIA----GTESSGPADQVLG 303
+GGAQAIA GTES D++ G
Sbjct: 184 VGGAQAIAALAFGTESVPKVDKIFG 208
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
nucleotide biosy process, ligase; HET: XMP; 2.72A
{Plasmodium falciparum}
Length = 556
Score = 30.6 bits (70), Expect = 1.9
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 571 LGKALGLPEEFLNCS--PGPGGGI 592
L + L LPEE N PGPG I
Sbjct: 418 LSRELNLPEEITNRHPFPGPGLAI 441
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella
burnetii}
Length = 527
Score = 30.9 bits (71), Expect = 1.9
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 571 LGKALGLPEEFLNCS--PGPGGGI 592
LG LGLP + + PGPG I
Sbjct: 389 LGLELGLPADLIYRHPFPGPGLAI 412
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 30.7 bits (69), Expect = 2.0
Identities = 28/161 (17%), Positives = 47/161 (29%), Gaps = 50/161 (31%)
Query: 366 GCGQQKLTPPVAKPLTVQGPVNPVDRSMNKAPPPYSIAIPL-LDHNEVPGNKSFRGHSEN 424
G G + +A L + V D + A PL +D + +
Sbjct: 23 GAG--NIGRAIAWDLKDEFDVYIGDVNNENLEKVKEFATPLKVDASNF----------DK 70
Query: 425 LITLIIASDLIINSIPLTKASPVTPPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEP 484
L+ ++ +L+I ++P KAAI D VD
Sbjct: 71 LVEVMKEFELVIGALPGFLGFKSI-----------KAAIKSKVDMVD------------- 106
Query: 485 GYLASLVPGEMPEEGEDWRHIMRDMNTVIM------PGITH 519
MPE + R I+ PG+++
Sbjct: 107 -------VSFMPENPLELRDEAEKAQVTIVFDAGFAPGLSN 140
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphata transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia
coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 30.5 bits (70), Expect = 2.2
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 571 LGKALGLPEEFLNCS--PGPGGGI 592
+G LGLP + L PGPG G+
Sbjct: 387 IGLELGLPYDMLYRHPFPGPGLGV 410
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 30.4 bits (69), Expect = 2.5
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 648 AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTT-GTC-AFDNLEE 705
+ + L + + +L D + + + + + G AF+ LE+
Sbjct: 109 KELQQITPLLLGTAN-QLLTIDDIKSLREPV---SSV--LIELPQREIGGQLPAFEELEK 162
Query: 706 LGPICQEYNIWLHVDAA 722
+ C E I LH+D A
Sbjct: 163 ISEYCHEQGISLHLDGA 179
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca
domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Length = 534
Score = 30.1 bits (66), Expect = 2.8
Identities = 17/136 (12%), Positives = 38/136 (27%), Gaps = 21/136 (15%)
Query: 413 PGNKSFRGHSENLITLIIASDLIINSIPLTKASPVTPPPNEEFREFGKAAIDFIADYVDN 472
+ + + + D P + S F + K I A+Y ++
Sbjct: 10 TVSADCKKEAIEKCAQWVVRDCR----PFSAVS------GSGFIDMIKFFIKVKAEYGEH 59
Query: 473 IRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGIT--HWQSPQ------ 524
+ +LPS P L+ V + E+ ++ T W
Sbjct: 60 VNVEELLPS--PITLSRKVTSDAKEKKALIGREIKSAVEKDGASATIDLWTDNYIKRNFL 117
Query: 525 -FNAYFPTGSSYPSIV 539
++ + ++
Sbjct: 118 GVTLHYHENNELRDLI 133
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 30.1 bits (69), Expect = 3.0
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 703 LEELGPICQEYN--IWLHVDAAYA 724
+E++ I ++ N +HVDA
Sbjct: 158 VEDVTRIVKKKNKETLVHVDAVQT 181
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 30.1 bits (67), Expect = 3.1
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 680 AKGLIPCCLIATLGT-TGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH 735
G P + T T G C N +E + ++ + LH D A+ G A P YA
Sbjct: 308 KAGQKPSYCVVTNCTYDGVCY--NAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYAD 362
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B;
pyrococcus horikoshii OT3, structural genomics, NPPSFA;
1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Length = 308
Score = 29.8 bits (68), Expect = 3.5
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 571 LGKALGLPEEFLNCS--PGPGGGI 592
L K LGLPE+ N PGPG +
Sbjct: 172 LAKFLGLPEKIYNRMPFPGPGLAV 195
>1qjw_A CEL6A (Y169F), cellobiohydrolase CEL6A (formerly called CBH II);
glycosidase, glycoprotein; HET: NAG MAN MGL SGC GLC;
1.90A {Trichoderma reesei} SCOP: c.6.1.1 PDB: 1cb2_A*
3cbh_A 1hgy_A* 1hgw_A* 1qk2_A* 1qk0_A*
Length = 365
Score = 29.8 bits (66), Expect = 3.9
Identities = 14/66 (21%), Positives = 22/66 (33%)
Query: 444 ASPVTPPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWR 503
AS + K ID I V + L +EP LA+LV + + +
Sbjct: 98 ASNGEYSIADGGVAKYKNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQ 157
Query: 504 HIMRDM 509
+
Sbjct: 158 SAYLEC 163
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 29.5 bits (67), Expect = 4.5
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 571 LGKALGLPEEFLNCS--PGPGGGI 592
LG+ LGLPEE ++ PGPG I
Sbjct: 426 LGRELGLPEELVSRHPFPGPGLAI 449
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.8 bits (66), Expect = 4.5
Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 20/133 (15%)
Query: 383 QGPVNPVDRSMNKAPPPYSIAIPLLDHNEVPGNKSFRGHSENLITLIIASDLIINSIPLT 442
G +NP + +AP + A + + P + + L I S+ ++ P
Sbjct: 623 PGFLNPQLINPQQAPLLRAFAEHIRANWPQPSEFGYGSTLQGSANLFIPSNRMVYPWPNQ 682
Query: 443 KASPVTPPPN--EEFREFGKAAIDFIADYVDNIRERPV------------------LPSV 482
+T P + I F V+++ + ++
Sbjct: 683 PLPRLTVAPTYDSAMSNWISTTIAFFIRVVNSVNMTATVNDLTRRTMTGVMTAMRQVKTM 742
Query: 483 EPGYLASLVPGEM 495
P Y+ + P E+
Sbjct: 743 TPFYIQHMCPTEL 755
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 29.4 bits (67), Expect = 4.7
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 571 LGKALGLPEEFLNCS--PGPGGGI 592
L LGLP+ PGPG +
Sbjct: 365 LALLLGLPDTLRLRHPFPGPGLAV 388
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 29.3 bits (66), Expect = 4.7
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 694 TTGTCAFDNLEELGPICQEYNIWLHVDAAYA 724
G +++++ +C EY++ L V+ AYA
Sbjct: 159 NYGNLP--DVKKIAKVCSEYDVPLLVNGAYA 187
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 29.0 bits (66), Expect = 5.2
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 695 TGTCA-FDNLEELGPICQEYNIWLHVDAAYA 724
TG A + EE + +++ +WL D Y
Sbjct: 171 TGAVADWGYFEEALGLARKHGLWLIHDNPYV 201
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase,
phosphate-binding motif; 2.04A {Escherichia coli} PDB:
3cqi_A 3cqh_A 3cqk_A
Length = 295
Score = 28.9 bits (65), Expect = 5.5
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 17/68 (25%)
Query: 701 DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHL----KRGLEYVDSFDFNTHKWLLV 756
D L+E + + L ++ L + L Y + + W +
Sbjct: 147 DGLKESVEMASRAQVTLAME----------IMDYPLMNSISKALGYAHYLN---NPWFQL 193
Query: 757 NFDCSAMW 764
D +
Sbjct: 194 YPDIGNLS 201
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 29.0 bits (65), Expect = 5.8
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 697 TCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY-VDSFDFNTHKWL 754
+N +++ + + VD S + + L+ D +T K +
Sbjct: 155 VIELENFKKVINTAKNKEAIVFVD---DASGARVRLLFNQPPALKLGADLVVTSTDKLM 210
>3cuc_A Protein of unknown function with A FIC domain; FIC protein family,
structural genomics, joint center for ST genomics, JCSG;
HET: MSE; 2.71A {Bacteroides thetaiotaomicron vpi-5482}
Length = 291
Score = 29.1 bits (65), Expect = 5.9
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 612 MINHWQSKNPSLTENDIRN---KLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRG 668
+ Q K LTE+ IR ++ ++ + + I + V + +S N VL
Sbjct: 84 IKQEAQDKERPLTESFIRELNRTILVQDYWKNAKTPDGQDIRMQIKVGEYKSRPNSVLTA 143
Query: 669 D 669
Sbjct: 144 T 144
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 29.2 bits (66), Expect = 6.2
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 27/98 (27%)
Query: 655 VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN 714
VR + + + L A++ K L T G + + LE +G IC +++
Sbjct: 119 VRTIEGPPDRPFSLETLARAIELHQPKCLF-----LTHGDSSSGLLQPLEGVGQICHQHD 173
Query: 715 I-------------------WLHVDAAYAGS--ALLLP 731
W +DA Y G+ L P
Sbjct: 174 CLLIVDAVASLCGVPFYMDKW-EIDAVYTGAQKVLGAP 210
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 29.1 bits (66), Expect = 6.4
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 695 TGTCA-FDNLEELGPICQEYNIWLHVDAAYA 724
TG+ A + +E + + + D AY
Sbjct: 194 TGSTATKEVFDEAIAKFKGTDTKIVHDFAYG 224
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 29.1 bits (66), Expect = 6.6
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 695 TGTCA-FDNLEELGPICQEYNIWLHVDAAYA 724
T C D E + + ++Y++ + D AYA
Sbjct: 185 TAQCVELDFFERVVALAKQYDVMVVHDLAYA 215
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo
sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Length = 376
Score = 29.0 bits (64), Expect = 7.3
Identities = 18/93 (19%), Positives = 24/93 (25%), Gaps = 17/93 (18%)
Query: 428 LIIASDLIINSIPLTKASPVTPPPNEEFREFGKAAIDFIADYVDNIRER----------- 476
L A L + L K T P + G + + V N E+
Sbjct: 276 LQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIYFQ 335
Query: 477 ------PVLPSVEPGYLASLVPGEMPEEGEDWR 503
P L L +P E P W
Sbjct: 336 KIPTEAPQLELKANYGLVEPIPFEFPPTSVQWT 368
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 28.8 bits (65), Expect = 7.6
Identities = 9/81 (11%), Positives = 18/81 (22%), Gaps = 22/81 (27%)
Query: 672 LTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNI---------------- 715
AV + L + T + + ++ +G + +
Sbjct: 122 PQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTH 181
Query: 716 ---WLHVDAAYAGS--ALLLP 731
D G L P
Sbjct: 182 PEDC-KADIYVTGPNKCLGAP 201
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 28.7 bits (64), Expect = 8.3
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 189 VCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYD 221
+ R+W+ D ++G S D D+++ ++
Sbjct: 323 LGIEYSRRWWETEDRIYGGASNTDKDISQIMFP 355
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 28.5 bits (64), Expect = 9.2
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 655 VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGT----TGTC-AFDNLEELGPI 709
+ ++ D + E+L TG + + L I
Sbjct: 175 IDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEI 234
Query: 710 CQEYNIWLHVDAAYA 724
+ Y+I L +D AY
Sbjct: 235 AKRYDIPLIIDNAYG 249
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 28.3 bits (64), Expect = 9.7
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 27/98 (27%)
Query: 655 VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYN 714
L + +A+ A+K + + G T T + E +G + +E
Sbjct: 100 PEVLDFPPGEPVDPEAVARALKRRRYRMVA-----LVHGETSTGVLNPAEAIGALAKEAG 154
Query: 715 I-------------------WLHVDAAYAGS--ALLLP 731
VD A+ GS L P
Sbjct: 155 ALFFLDAVTTLGMLPFSMRAM-GVDYAFTGSQKCLSAP 191
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 28.4 bits (64), Expect = 9.9
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Query: 648 AIIGDVPVRQLRSDDNGVLRGDALLTAVKED----LAKGLIPCCLIATLGTTG--TCAFD 701
A++ V + + G + D + A++ LI + T +G +
Sbjct: 97 AVLSGVMPHPVPGKN-GAMDPDDVRKAIRPRNIHFPRTSLI--AIENTHNRSGGRVVPLE 153
Query: 702 NLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFD 747
N++E+ I +E+ I +H+D A +A + A EY D
Sbjct: 154 NIKEICTIAKEHGINVHIDGARIFNASI----ASGVPVKEYAGYAD 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.417
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,896,019
Number of extensions: 732740
Number of successful extensions: 1628
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1571
Number of HSP's successfully gapped: 85
Length of query: 764
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 663
Effective length of database: 3,881,772
Effective search space: 2573614836
Effective search space used: 2573614836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)