RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13453
(764 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 309 bits (791), Expect = 1e-97
Identities = 174/312 (55%), Positives = 229/312 (73%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDMNTV 512
+FR GK +D++ADY++ I R V P V+PGYL L+P P+E + + I++D+ +
Sbjct: 4 SDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKI 63
Query: 513 IMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLG 572
IMPG+THW SP F AYFPT SSYP+++ DML GA G IGFSW +SPACTELE ++M+WLG
Sbjct: 64 IMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLG 123
Query: 573 KALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKL 632
K L LPE FL G GGG+IQ +ASEATLV++L A+ K++ Q+ +P LT+ + KL
Sbjct: 124 KMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKL 183
Query: 633 VAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATL 692
VAY SDQ++SSVE++ +IG V ++ + SD +R AL A++ D A GLIP ++ATL
Sbjct: 184 VAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATL 243
Query: 693 GTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFDFNTHK 752
GTT C+FDNL E+GPIC E +IWLHVDAAYAGSA + PE+ HL G+E+ DSF+FN HK
Sbjct: 244 GTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHK 303
Query: 753 WLLVNFDCSAMW 764
WLLVNFDCSAMW
Sbjct: 304 WLLVNFDCSAMW 315
Score = 131 bits (331), Expect = 3e-33
Identities = 63/146 (43%), Positives = 90/146 (61%), Gaps = 16/146 (10%)
Query: 126 FQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPS 185
++HWQ+PLGRRFR+LK+W R YG+KGLQAY+RKH+ L+ +F V QD RFE+ +
Sbjct: 346 YRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT 405
Query: 186 MGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRIIARKVIYIVKGSFQDRLFMRFA 245
+GLVCFRLK G + LN+A+ +RI + + I++V + + +RFA
Sbjct: 406 LGLVCFRLK----------------GSDGLNEALLERINSARKIHLVPCRLRGQFVLRFA 449
Query: 246 ICSSQTEESDVQLGWNEIRTATEEVL 271
ICS + E V+L W IR E+L
Sbjct: 450 ICSRKVESGHVRLAWEHIRGLAAELL 475
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 130 bits (328), Expect = 5e-33
Identities = 43/316 (13%), Positives = 93/316 (29%), Gaps = 42/316 (13%)
Query: 460 KAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEG---EDWRHIMRDMNTVIMPG 516
K D ++ +D+ + ++ P + I+ D + + G
Sbjct: 2 KQVTDLRSELLDSRFGAKSISTIAESK-------RFPLHEMRDDVAFQIIND--ELYLDG 52
Query: 517 ITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVLVMNWLGKALG 576
F + V ++ + P +++ +N +
Sbjct: 53 NARQNLATF-----CQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWH 107
Query: 577 LPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTENDIRNKLVAYT 636
P G G +SEA ++ + K + W+ + + + +
Sbjct: 108 APAPKN----GQAVGTNTIGSSEACMLGGMAMKWR----WRKRMEAAGKPTDK---PNLV 156
Query: 637 SDQSNSSVEKSAIIGDVPVRQLRSDD-NGVLRGDALLTAVKEDLAKGLIPCCLIATLGTT 695
K A DV +R++ + ++ A E+ ++ T G T
Sbjct: 157 CGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFGVT 210
Query: 696 GTCAFDNLE------ELGPICQEYNIWLHVDAAYAGSAL-LLPEYAHLKRGLEYVDSFDF 748
T ++ + + +I +H+DAA G + L V S
Sbjct: 211 YTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISA 270
Query: 749 NTHKWLLVNFDCSAMW 764
+ HK+ L C +
Sbjct: 271 SGHKFGLAPLGCGWVI 286
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 107 bits (268), Expect = 2e-25
Identities = 47/321 (14%), Positives = 104/321 (32%), Gaps = 51/321 (15%)
Query: 453 EEFREFGKAAIDFIADYVDNIRERPVLPS--VEPGYLASLVPGEMPEEGEDWRHIM---- 506
+ + G+ ++ ++++ +P ++ + + + + +
Sbjct: 12 KNMEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGE 71
Query: 507 RDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACTELEVL 566
R+ S + +G+ + D A G L++
Sbjct: 72 REA-RTYSKIHEELSSGFCHGIGRSGN-----LVDPQPKASGASIMYALTNK-------- 117
Query: 567 VMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHWQSKNPSLTEN 626
++ K LGL I ++ ++ L A RK
Sbjct: 118 ILESFFKQLGLNV----------HAIATPISTGMSISLCLSAARKK-------------- 153
Query: 627 DIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLR---SDDNGVLRGDALLTAVKEDLAKGL 683
V S+ S K+ + +R + D + + + A+K+++ G
Sbjct: 154 --YGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGN 211
Query: 684 IPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV 743
PC +++TL D++ E+ IC+ Y+I ++ AYA E K V
Sbjct: 212 RPC-VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLK-KAFKYRV 269
Query: 744 DSFDFNTHKWLLVNFDCSAMW 764
D+ ++ K LL ++
Sbjct: 270 DAVVSSSDKNLLTPIGGGLVY 290
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 104 bits (259), Expect = 3e-24
Identities = 44/283 (15%), Positives = 84/283 (29%), Gaps = 36/283 (12%)
Query: 493 GEMPEEGEDWRHIMRDMNTVIMPGITHWQS--------PQFNAYFPTGSSYPSIVGDMLS 544
G+ PE+G D + ++ + + ++ + + Y I G S
Sbjct: 17 GKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRS 76
Query: 545 GAFGLIGFSWLSSPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVS 604
G + S ++ ++ + K G+ + A+ +L
Sbjct: 77 GDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSV--------ASCFVVPMATGMSLTL 128
Query: 605 ILVAKRKMINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAI---IGDVPVRQLRSD 661
+ R H + K S KS + V + +
Sbjct: 129 CFLTLR----HKRPKAK-----------YIIWPRIDQKSCFKSMVTAGFEPVVIENVLEG 173
Query: 662 DNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 721
D A+ ++E CL +T D LEEL IC Y+I V+
Sbjct: 174 DELRTDLKAVEAKIQEL--GPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNN 231
Query: 722 AYAGSALLLPEYAHLKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764
AY + + +D+F + K +V + +
Sbjct: 232 AYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIA 274
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 37.2 bits (85), Expect = 0.006
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 13/109 (11%)
Query: 669 DALLTAVKEDLAKGLIPCCLIATLGTTG--TCAFDNLEELGPICQEYNIWLHVDAA---- 722
+ L ++E + T + G + NL+ + I ++Y+I + +D+A
Sbjct: 170 EGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAE 229
Query: 723 -YAGSALLLPEYAH------LKRGLEYVDSFDFNTHKWLLVNFDCSAMW 764
EY + +Y D + K +V
Sbjct: 230 NAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCM 278
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 36.3 bits (83), Expect = 0.015
Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 15/98 (15%)
Query: 669 DALLTAVKEDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAG 725
+ L T +KE I +A N+ + + Y I + DA
Sbjct: 161 NKLATLIKEK-GAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCV 219
Query: 726 SAL-----LLPEYAHLKRGLEYVDSFD------FNTHK 752
Y ++ + F + K
Sbjct: 220 ENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKK 257
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 35.7 bits (81), Expect = 0.021
Identities = 22/174 (12%), Positives = 47/174 (27%), Gaps = 21/174 (12%)
Query: 557 SPACTELEVLVMNWLGKALGLPEEFLNCSPGPGGGIIQSTASEATLVSILVAKRKMINHW 616
S +L+ +P A + V +
Sbjct: 74 SRNYYDLKDKAKELFNYDYIIPA---------------HQGRGAENILFPVLLKYKQKEG 118
Query: 617 QSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVK 676
++KNP N + A+ N + + + D G L +
Sbjct: 119 KAKNPVFISNFHFDTTAAHVE--LNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIA 176
Query: 677 EDLAKGLIPCCLIATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAAYAGSA 727
+ I + + NL+E+ I +++ I++ +D+A
Sbjct: 177 QH-GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCEN 229
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 30.2 bits (67), Expect = 0.96
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 3/87 (3%)
Query: 658 LRSDDNGVLRGDALLTAVKEDLAKGLIPCCLIATLGTTGTCAFDNLEELGPICQEYNIWL 717
+D L D L V + + LI G +LEE+ E+++ +
Sbjct: 139 TYEEDEFRLNVDELKKYVTDK-TRALIINSPCNPTGAV--LTKKDLEEIADFVVEHDLIV 195
Query: 718 HVDAAYAGSALLLPEYAHLKRGLEYVD 744
D Y + + +
Sbjct: 196 ISDEVYEHFIYDDARHYSIASLDGMFE 222
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima
[TaxId: 2336]}
Length = 225
Score = 28.6 bits (63), Expect = 2.5
Identities = 11/129 (8%), Positives = 32/129 (24%), Gaps = 18/129 (13%)
Query: 112 GQKSLRTTVLFHFLFQHWQIPLGRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL 171
K L + + + L+ + ++ + + +
Sbjct: 93 ADKCHDIAKNVLELMEEPPLKPLEDIP--AMANQTSEMLKFALRMFADVNVEKSFEVCRM 150
Query: 172 VEQDDRFELVCPPSMGLVCFRLKVRFWDKLDNLFGTISFGDNDLNKAVYDRI------IA 225
+ D V L + + + + + + + I I
Sbjct: 151 DSKVDDLYE-------KVREELLLYMMESPKYVKRALLLLE--IAGN-IEIIADYATNIV 200
Query: 226 RKVIYIVKG 234
+Y+V+G
Sbjct: 201 EVSVYMVQG 209
>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga
maritima [TaxId: 2336]}
Length = 134
Score = 27.7 bits (61), Expect = 2.5
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 493 GEMPEEGEDWRHIMRDMNTVIMPGITHW 520
G E G+ R + + I P + HW
Sbjct: 66 GFYQERGKPARILKKGDVVEIPPNVVHW 93
>d1qjwa_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Trichoderma
reesei, Cel6a [TaxId: 51453]}
Length = 362
Score = 28.4 bits (63), Expect = 3.5
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 460 KAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGEDWRHIMRDM 509
K ID I V + L +EP LA+LV + + + +
Sbjct: 111 KNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQSAYLEC 160
>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter
freundii [TaxId: 546]}
Length = 397
Score = 27.7 bits (61), Expect = 5.0
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 27/94 (28%)
Query: 143 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEQDDRFELVCPPSM---------------- 186
W+TLR G+K L + +H A K A +E V P +
Sbjct: 251 WLTLR--GVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP 308
Query: 187 -GLVCFRLK------VRFWDKLDNLFG-TISFGD 212
G++ F + R + + L +S GD
Sbjct: 309 GGIISFEIAGGLEAGRRMINSV-ELCLLAVSLGD 341
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId:
1421]}
Length = 309
Score = 27.5 bits (59), Expect = 5.5
Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 16/161 (9%)
Query: 501 DWRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPAC 560
+ I +N G+ + + Y YP + + ++ A +
Sbjct: 145 NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTYRVA 204
Query: 561 TELEVLVMNWLGKALGLPEEFLNCSPG--------PGGGIIQSTASEAT-LVSILVAKRK 611
++ G + + +PG GG S S AT VS L A
Sbjct: 205 DYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGGYNTISGTSMATPHVSGLAA--- 261
Query: 612 MINHWQSKNPSLTENDIRNKLVAYTSDQSNSSVEKSAIIGD 652
++NPSL+ +R+ L + + A IGD
Sbjct: 262 ---KIWAENPSLSNTQLRSNLQE-RAKSVDIKGGYGAAIGD 298
>d1lqya_ d.167.1.1 (A:) Peptide deformylase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 184
Score = 27.1 bits (59), Expect = 6.6
Identities = 18/132 (13%), Positives = 30/132 (22%), Gaps = 11/132 (8%)
Query: 442 TKASPVTPPPNEEFREFGKAAIDFIADYVDNIRERPVLPSVEPGYLASLVPGEMPEEGED 501
A PV PP+EE + ++ +D++ D G A +
Sbjct: 17 KVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIGLAAPQI-------NVS 69
Query: 502 WRHIMRDMNTVIMPGITHWQSPQFNAYFPTGSSYPSIVGDMLSGAFGLIGFSWLSSPACT 561
R I + S S G +
Sbjct: 70 KRMIAVHVTDENG----TLYSYALFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYA 125
Query: 562 ELEVLVMNWLGK 573
+ V G+
Sbjct: 126 RITVTGTTLDGE 137
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.417
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,887,791
Number of extensions: 136299
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 17
Length of query: 764
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 672
Effective length of database: 1,144,436
Effective search space: 769060992
Effective search space used: 769060992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.5 bits)