BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13459
(542 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/452 (31%), Positives = 237/452 (52%), Gaps = 63/452 (13%)
Query: 3 SVAAWLPFARAAAIGWVPIATHXXXXXXXXKDRRKADDEKLLINVSGRRFETWRNTLEKY 62
+VA P AAA+ P T+ + E+++IN+SG RFET TL ++
Sbjct: 21 TVATGDPVDEAAALPGHPQDTYD-------PEADHESSERVVINISGLRFETQLKTLAQF 73
Query: 63 PDSLLGSNEREF-FYDEDSKEYFFDRDPDIFRHILNYYRTG-KLHYPKHECLTSYDEELA 120
P++LLG ++ ++D EYFFDR+ F IL YY++G +L P + L + EE+
Sbjct: 74 PETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIR 133
Query: 121 FFGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLPQLTNIRQKMWRAFENPHT 180
F+ + G+ E +R+ D+ + ++ LP+ ++++W FE P +
Sbjct: 134 FYEL-----GEEAMEMFRE----------DEGYIKEEERPLPE-NEFQRQVWLLFEYPES 177
Query: 181 STAALVFYYVTGFFIAVSVMANVVETVPC-----------------------GHRPGRAG 217
S A + V+ I +S+++ +ET+P G++ +
Sbjct: 178 SGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSF 237
Query: 218 SLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGL 277
+ P FF ++T C++ F+ E+L+R FA P + F ++M+IID+VAI+PYY+ +
Sbjct: 238 TDP--------FFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTI 289
Query: 278 GITDND-------DVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFS 330
+T+++ +V R+ R+ RIFK SRHS+GL+ILG TLK+ ELG L+F
Sbjct: 290 FLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFF 349
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIXXXXX 390
L + +I+F++ +++AE + + F SIP AFW+ +V+MTT+GYGDMVP TI GKI
Sbjct: 350 LFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLC 409
Query: 391 XXXXXXXXXXXXXXXXSNFSRIYHQNQRADKR 422
SNF+ YH+ +++
Sbjct: 410 AIAGVLTIALPVPVIVSNFNYFYHRETEGEEQ 441
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 231 bits (590), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 141/452 (31%), Positives = 237/452 (52%), Gaps = 63/452 (13%)
Query: 3 SVAAWLPFARAAAIGWVPIATHXXXXXXXXKDRRKADDEKLLINVSGRRFETWRNTLEKY 62
+VA P AAA+ P T+ + E+++IN+SG RFET TL ++
Sbjct: 21 TVATGDPVDEAAALPGHPQDTYD-------PEADHESSERVVINISGLRFETQLKTLAQF 73
Query: 63 PDSLLGSNEREF-FYDEDSKEYFFDRDPDIFRHILNYYRTG-KLHYPKHECLTSYDEELA 120
P++LLG ++ ++D EYFFDR+ F IL YY++G +L P + L + EE+
Sbjct: 74 PETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIR 133
Query: 121 FFGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLPQLTNIRQKMWRAFENPHT 180
F+ + G+ E +R+ D+ + ++ LP+ ++++W FE P +
Sbjct: 134 FYEL-----GEEAMEMFRE----------DEGYIKEEERPLPE-NEFQRQVWLLFEYPES 177
Query: 181 STAALVFYYVTGFFIAVSVMANVVETVPC-----------------------GHRPGRAG 217
S A + V+ I +S+++ +ET+P G++ +
Sbjct: 178 SGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSF 237
Query: 218 SLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGL 277
+ P FF ++T C++ ++ E+L+R FA P + F ++M+IID+VAI+PYY+ +
Sbjct: 238 TDP--------FFIVETLCIIWWSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTI 289
Query: 278 GITDND-------DVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFS 330
+T+++ +V R+ R+ RIFK SRHS+GL+ILG TLK+ ELG L+F
Sbjct: 290 FLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFF 349
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIXXXXX 390
L + +I+F++ +++AE + + F SIP AFW+ +V+MTT+GYGDMVP TI GKI
Sbjct: 350 LFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLC 409
Query: 391 XXXXXXXXXXXXXXXXSNFSRIYHQNQRADKR 422
SNF+ YH+ +++
Sbjct: 410 AIAGVLTIALPVPVIVSNFNYFYHRETEGEEQ 441
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 231 bits (589), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 137/418 (32%), Positives = 223/418 (53%), Gaps = 60/418 (14%)
Query: 41 EKLLINVSGRRFETWRNTLEKYPDSLLGSNEREF-FYDEDSKEYFFDRDPDIFRHILNYY 99
E+++IN+SG RFET TL ++P++LLG ++ ++D EYFFDR+ F IL YY
Sbjct: 33 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 92
Query: 100 RTG-KLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGD 158
++G +L P + L + EE+ F+ + G+ E +R+ D+ + +
Sbjct: 93 QSGGRLRRPVNVPLDIFSEEIRFYEL-----GEEAMEMFRE----------DEGYIKEEE 137
Query: 159 QNLPQLTNIRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPC--------- 209
+ LP+ ++++W FE P +S A + V+ I +S+++ +ET+P
Sbjct: 138 RPLPE-NEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMH 196
Query: 210 --------------GHRPGRAGSLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRC 255
G++ + + P FF ++T C++ F+ E+L+R FA P +
Sbjct: 197 GGGVTFHTYSQSTIGYQQSTSFTDP--------FFIVETLCIIWFSFEFLVRFFACPSKA 248
Query: 256 KFVRSVMSIIDVVAILPYYIGLGITDNDDVSGA-----------FVTLRVFRVFRIFKFS 304
F ++M+IID+VAI+PY+I LG + A +R+ RVFRIFK S
Sbjct: 249 GFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLS 308
Query: 305 RHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYT 364
RHS+GL+ILG TLK+ ELG L+F L + +I+F++ +++AE + + F SIP AFW+
Sbjct: 309 RHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWA 368
Query: 365 IVTMTTLGYGDMVPETIAGKIXXXXXXXXXXXXXXXXXXXXXSNFSRIYHQNQRADKR 422
+V+MTT+GYGDMVP TI GKI SNF+ YH+ +++
Sbjct: 369 VVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQ 426
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 231 bits (588), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/418 (32%), Positives = 223/418 (53%), Gaps = 60/418 (14%)
Query: 41 EKLLINVSGRRFETWRNTLEKYPDSLLGSNEREF-FYDEDSKEYFFDRDPDIFRHILNYY 99
E+++IN+SG RFET TL ++P++LLG ++ ++D EYFFDR+ F IL YY
Sbjct: 33 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 92
Query: 100 RTG-KLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGD 158
++G +L P + L + EE+ F+ + G+ E +R+ D+ + +
Sbjct: 93 QSGGRLRRPVNVPLDIFSEEIRFYEL-----GEEAMEMFRE----------DEGYIKEEE 137
Query: 159 QNLPQLTNIRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPC--------- 209
+ LP+ ++++W FE P +S A + V+ I +S+++ +ET+P
Sbjct: 138 RPLPE-NEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMH 196
Query: 210 --------------GHRPGRAGSLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRC 255
G++ + + P FF ++T C++ F+ E+L+R FA P +
Sbjct: 197 GGGVTFHTYSNSTIGYQQSTSFTDP--------FFIVETLCIIWFSFEFLVRFFACPSKA 248
Query: 256 KFVRSVMSIIDVVAILPYYIGLGITDNDDVSGA-----------FVTLRVFRVFRIFKFS 304
F ++M+IID+VAI+PY+I LG + A +R+ RVFRIFK S
Sbjct: 249 GFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLS 308
Query: 305 RHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYT 364
RHS+GL+ILG TLK+ ELG L+F L + +I+F++ +++AE + + F SIP AFW+
Sbjct: 309 RHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWA 368
Query: 365 IVTMTTLGYGDMVPETIAGKIXXXXXXXXXXXXXXXXXXXXXSNFSRIYHQNQRADKR 422
+V+MTT+GYGDMVP TI GKI SNF+ YH+ +++
Sbjct: 369 VVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQ 426
>pdb|2I2R|A Chain A, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|B Chain B, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|C Chain C, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|D Chain D, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|I Chain I, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|J Chain J, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|K Chain K, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|L Chain L, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 144
Score = 222 bits (565), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 96/143 (67%), Positives = 126/143 (88%), Gaps = 2/143 (1%)
Query: 2 ASVAAWLPFARAAAIGWVPIATHXXXXXXXXKDRRKADDEKLLINVSGRRFETWRNTLEK 61
A VAAWLPFARAAAIGW+P+A K++R+ DE +++NVSGRRF+TWR TLE+
Sbjct: 4 AGVAAWLPFARAAAIGWMPVANCPMPLAPADKNKRQ--DELIVLNVSGRRFQTWRTTLER 61
Query: 62 YPDSLLGSNEREFFYDEDSKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAF 121
YPD+LLGS E+EFF++ED+KEYFFDRDP++FR +LN+YRTGKLHYP++EC+++YD+ELAF
Sbjct: 62 YPDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAF 121
Query: 122 FGILPDVIGDCCYEDYRDRKREN 144
+GILP++IGDCCYE+Y+DRKREN
Sbjct: 122 YGILPEIIGDCCYEEYKDRKREN 144
>pdb|2NZ0|B Chain B, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|D Chain D, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 140
Score = 221 bits (563), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 96/142 (67%), Positives = 126/142 (88%), Gaps = 2/142 (1%)
Query: 5 AAWLPFARAAAIGWVPIATHXXXXXXXXKDRRKADDEKLLINVSGRRFETWRNTLEKYPD 64
AAWLPFARAAAIGW+P+A K++R+ DE +++NVSGRRF+TWR TLE+YPD
Sbjct: 1 AAWLPFARAAAIGWMPVANCPMPLAPADKNKRQ--DELIVLNVSGRRFQTWRTTLERYPD 58
Query: 65 SLLGSNEREFFYDEDSKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAFFGI 124
+LLGS E+EFF++ED+KEYFFDRDP++FR +LN+YRTGKLHYP++EC+++YD+ELAF+GI
Sbjct: 59 TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGI 118
Query: 125 LPDVIGDCCYEDYRDRKRENAE 146
LP++IGDCCYE+Y+DRKRENAE
Sbjct: 119 LPEIIGDCCYEEYKDRKRENAE 140
>pdb|1S1G|A Chain A, Crystal Structure Of Kv4.3 T1 Domain
pdb|1S1G|B Chain B, Crystal Structure Of Kv4.3 T1 Domain
Length = 124
Score = 188 bits (477), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 105/113 (92%)
Query: 34 DRRKADDEKLLINVSGRRFETWRNTLEKYPDSLLGSNEREFFYDEDSKEYFFDRDPDIFR 93
D+ K DE +++NVSGRRF+TWR TLE+YPD+LLGS E+EFF++ED+KEYFFDRDP++FR
Sbjct: 6 DKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFFDRDPEVFR 65
Query: 94 HILNYYRTGKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRKRENAE 146
+LN+YRTGKLHYP++EC+++YD+ELAF+GILP++IGDCCYE+Y+DRKREN E
Sbjct: 66 CVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKRENLE 118
>pdb|1NN7|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shal Voltage- Gated Potassium Channel
Length = 105
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 75/104 (72%), Positives = 101/104 (97%)
Query: 43 LLINVSGRRFETWRNTLEKYPDSLLGSNEREFFYDEDSKEYFFDRDPDIFRHILNYYRTG 102
+++NVSG RF+TW++TLE+YPD+LLGS+ER+FFY ++++YFFDRDPDIFRHILN+YRTG
Sbjct: 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTG 61
Query: 103 KLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRKRENAE 146
KLHYP+HEC+++YDEELAFFG++P++IGDCCYE+Y+DR+RENAE
Sbjct: 62 KLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRENAE 105
>pdb|3KVT|A Chain A, Tetramerization Domain From Akv3.1 (shaw-subfamily)
Voltage-gated Potassium Channel
Length = 115
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Query: 40 DEKLLINVSGRRFETWRNTLEKYPDSLLGS-NEREFFYDEDSKEYFFDRDPDIFRHILNY 98
+ +++INV G R ET++ TL+K P + L E YD EYFFDR P +F I+NY
Sbjct: 4 ENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINY 63
Query: 99 YRTGKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDY 137
YR+GKLHYP C ++EEL F+G+ + + CC+ Y
Sbjct: 64 YRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTY 102
>pdb|1EOE|A Chain A, Crystal Structure Of The V135r Mutant Of A Shaker T1
Domain
Length = 100
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 7/101 (6%)
Query: 41 EKLLINVSGRRFETWRNTLEKYPDSLLGS-NEREFFYDEDSKEYFFDRDPDIFRHILNYY 99
E+++INVSG RFET TL ++PD+LLG+ +R +YD EYFFDR+ F IL +Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 100 RT-GKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRD 139
++ G+L P++ L + EE+ F+ +G+ +E YR+
Sbjct: 61 QSGGRLRRPRNVPLDVFSEEIKFY-----ELGENAFERYRE 96
>pdb|1T1D|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shaker Potassium Channel
Length = 100
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 63/101 (62%), Gaps = 7/101 (6%)
Query: 41 EKLLINVSGRRFETWRNTLEKYPDSLLGS-NEREFFYDEDSKEYFFDRDPDIFRHILNYY 99
E+++INVSG RFET TL ++PD+LLG+ +R +YD EYFFDR+ F IL +Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 100 RT-GKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRD 139
++ G+L P + L + EE+ F+ +G+ +E YR+
Sbjct: 61 QSGGRLRRPVNVPLDVFSEEIKFYE-----LGENAFERYRE 96
>pdb|1EOF|A Chain A, Crystal Structure Of The N136a Mutant Of A Shaker T1
Domain
Length = 100
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 7/101 (6%)
Query: 41 EKLLINVSGRRFETWRNTLEKYPDSLLGS-NEREFFYDEDSKEYFFDRDPDIFRHILNYY 99
E+++INVSG RFET TL ++PD+LLG+ +R +YD EYFFDR+ F IL +Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 100 RT-GKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRD 139
++ G+L P L + EE+ F+ +G+ +E YR+
Sbjct: 61 QSGGRLRRPVAVPLDVFSEEIKFYE-----LGENAFERYRE 96
>pdb|1EOD|A Chain A, Crystal Structure Of The N136d Mutant Of A Shaker T1
Domain
Length = 100
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 7/101 (6%)
Query: 41 EKLLINVSGRRFETWRNTLEKYPDSLLGS-NEREFFYDEDSKEYFFDRDPDIFRHILNYY 99
E+++INVSG RFET TL ++PD+LLG+ +R +YD EYFFDR+ F IL +Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 100 RT-GKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRD 139
++ G+L P L + EE+ F+ +G+ +E YR+
Sbjct: 61 QSGGRLRRPVDVPLDVFSEEIKFYE-----LGENAFERYRE 96
>pdb|1A68|A Chain A, Crystal Structure Of The Tetramerization Domain Of The
Shaker Potassium Channel
Length = 95
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 7/99 (7%)
Query: 41 EKLLINVSGRRFETWRNTLEKYPDSLLGS-NEREFFYDEDSKEYFFDRDPDIFRHILNYY 99
E+++INVSG RFET TL ++PD+LLG+ +R +YD EYFFDR+ F IL +Y
Sbjct: 2 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 61
Query: 100 RT-GKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDY 137
++ G+L P + L + EE+ F+ +G+ +E Y
Sbjct: 62 QSGGRLRRPVNVPLDVFSEEIKFYE-----LGENAFERY 95
>pdb|1EXB|E Chain E, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of
Voltage-Dependent K Channels
Length = 103
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 41 EKLLINVSGRRFETWRNTLEKYPDSLLGS-NEREFFYDEDSKEYFFDRDPDIFRHILNYY 99
E+++IN+SG RFET TL ++P++LLG+ +R ++D EYFFDR+ F IL YY
Sbjct: 11 ERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 70
Query: 100 RT-GKLHYPKHECLTSYDEELAFFGI 124
++ G+L P + L + EE+ F+ +
Sbjct: 71 QSGGRLRRPVNVPLDMFSEEIKFYEL 96
>pdb|1QDW|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|B Chain B, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|C Chain C, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|D Chain D, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|E Chain E, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|F Chain F, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|G Chain G, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
pdb|1QDW|H Chain H, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-119
Length = 87
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 41 EKLLINVSGRRFETWRNTLEKYPDSLLG-SNEREFFYDEDSKEYFFDRDPDIFRHILNYY 99
E+++IN+SG RFET TL ++P++LLG +R ++D EYFFDR+ F IL YY
Sbjct: 1 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 100 RT-GKLHYPKHECLTSYDEELAFFGI 124
++ G+L P + L + EE+ F+ +
Sbjct: 61 QSGGRLRRPVNVPLDIFSEEIRFYEL 86
>pdb|1QDV|A Chain A, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
pdb|1QDV|B Chain B, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
pdb|1QDV|C Chain C, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
pdb|1QDV|D Chain D, N-Terminal Domain, Voltage-Gated Potassium Channel Kv1.2
Residues 33-131
Length = 99
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 41 EKLLINVSGRRFETWRNTLEKYPDSLLGS-NEREFFYDEDSKEYFFDRDPDIFRHILNYY 99
E+++IN+SG RFET TL ++P++LLG +R ++D EYFFDR+ F IL YY
Sbjct: 1 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 100 RT-GKLHYPKHECLTSYDEELAFFGI 124
++ G+L P + L + EE+ F+ +
Sbjct: 61 QSGGRLRRPVNVPLDIFSEEIRFYEL 86
>pdb|1DSX|A Chain A, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|B Chain B, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|C Chain C, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|D Chain D, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|E Chain E, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|F Chain F, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|G Chain G, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
pdb|1DSX|H Chain H, Kv1.2 T1 Domain, Residues 33-119, T46v Mutant
Length = 87
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 41 EKLLINVSGRRFETWRNTLEKYPDSLLG-SNEREFFYDEDSKEYFFDRDPDIFRHILNYY 99
E+++IN+SG RFE TL ++P++LLG +R ++D EYFFDR+ F IL YY
Sbjct: 1 ERVVINISGLRFEVQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYY 60
Query: 100 RT-GKLHYPKHECLTSYDEELAFFGI 124
++ G+L P + L + EE+ F+ +
Sbjct: 61 QSGGRLRRPVNVPLDIFSEEIRFYEL 86
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 14/93 (15%)
Query: 300 IFKFSRHSQGLRILGYTLKSCASEL-------GFLVFSLAMAIIIFATVMFYAEKNVDGT 352
+ K R S +LG L + A L G ++F++A+A + E+++
Sbjct: 105 LLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALA-------AYVIERDIQPE 157
Query: 353 NFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
F SIP A W+ +VT++T GYGD +P++ AG++
Sbjct: 158 KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRV 190
>pdb|1S6C|B Chain B, Crystal Structure Of The Complex Between Kchip1 And
Kv4.2 N1-30
Length = 30
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/22 (81%), Positives = 21/22 (95%)
Query: 2 ASVAAWLPFARAAAIGWVPIAT 23
A VAAWLPFARAAAIGW+P+A+
Sbjct: 3 AGVAAWLPFARAAAIGWMPVAS 24
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G + PAA W+++ T TT+GYGD+ P T+ G+
Sbjct: 36 LVIVLLAGSYLAVLAERGAPGAQLITYPAALWWSVETATTVGYGDLYPVTLWGR 89
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G + P A W++++T TT+GYGD+ P T+ G+
Sbjct: 15 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVITATTVGYGDLYPVTLWGR 68
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 7/164 (4%)
Query: 224 RYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDND 283
Y + + +D V+I A+Y R + + D +V+ ++ ++ A++P GL
Sbjct: 48 EYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVP--AGLLALIEG 103
Query: 284 DVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFL-VFSLAMAIIIFATVM 342
++G + V + + S+G + L + A ++ F +F M +++
Sbjct: 104 HLAGLGLFRLVRLLRFLRILLIISRGSKFLS-AIADAADKIRFYHLFGAVMLTVLYGAFA 162
Query: 343 FYAEKNVD-GTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
Y + D ++ S+ A W+ +VT TT+GYGD+VP T GK+
Sbjct: 163 IYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKV 206
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G++
Sbjct: 43 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRL 97
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
+ +II M + E ++ + P A W+ IVT TT+GYGD+VP T G+I
Sbjct: 23 FVLLVIIIPVPMVFIEPEIN-----NYPDALWWAIVTATTVGYGDIVPVTPIGRI 72
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G+
Sbjct: 36 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGR 89
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G+
Sbjct: 15 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGR 68
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G++
Sbjct: 14 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRL 68
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G++
Sbjct: 15 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRL 69
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G++
Sbjct: 42 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRL 96
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 7/164 (4%)
Query: 224 RYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDND 283
Y + + +D V+I A+Y R + + D +V+ ++ ++ A++P GL
Sbjct: 36 EYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVP--AGLLALIEG 91
Query: 284 DVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFL-VFSLAMAIIIFATVM 342
++G + V + + S+G + L + A ++ F +F M +++
Sbjct: 92 HLAGLGLFRLVRLLRFLRILLIISRGSKFLS-AIADAADKIRFYHLFGAVMLTVLYGAFA 150
Query: 343 FYAEKNVD-GTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
Y + D ++ S+ A W+ +VT TT+GYGD+VP T GK+
Sbjct: 151 IYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKV 194
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 345 AEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
AE+ G + P A W+++ T TT+GYGD+ P T+ G++
Sbjct: 50 AERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRL 90
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G+
Sbjct: 15 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVSTATTVGYGDLYPVTLWGR 68
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G S P A W+++ T TT+GYGD+ P T+ G+
Sbjct: 59 LVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGR 112
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G++
Sbjct: 15 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRL 69
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G+
Sbjct: 15 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVQTATTVGYGDLYPVTLWGR 68
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G+
Sbjct: 36 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR 89
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G+
Sbjct: 16 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR 69
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G+
Sbjct: 36 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR 89
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G+
Sbjct: 36 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR 89
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G+
Sbjct: 15 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR 68
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G+
Sbjct: 36 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR 89
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G+
Sbjct: 36 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR 89
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G+
Sbjct: 14 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR 67
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+ G+
Sbjct: 36 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVHTATTVGYGDLYPVTLWGR 89
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|B Chain B, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|C Chain C, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|D Chain D, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
pdb|3DRZ|E Chain E, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of
Human Kctd5 Protein
Length = 107
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 45 INVSGRRFETWRNTLEKYPDSLL---GSNEREFFYDED-SKEYFFDRDPDIFRHILNYYR 100
+NV G F T R TL + P S L + + D+D + Y DRDP F +LNY R
Sbjct: 10 LNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLR 69
Query: 101 TGKLHYPKHECLTSYDEELAFFGI 124
GKL K EE F+ I
Sbjct: 70 HGKLVINKDLAEEGVLEEAEFYNI 93
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
L + ++ + + AE+ G + P A W+++ T T +GYGD+ P T+ G++
Sbjct: 36 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATCVGYGDLYPVTLWGRL 90
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|B Chain B, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|C Chain C, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|D Chain D, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRX|E Chain E, X-Ray Crystal Structure Of Human Kctd5 Protein
Crystallized In High- Salt Buffer
pdb|3DRY|A Chain A, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|B Chain B, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|C Chain C, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|D Chain D, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
pdb|3DRY|E Chain E, X-ray Crystal Structure Of Human Kctd5 Protein
Crystallized In Low- Salt Buffer
Length = 202
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 45 INVSGRRFETWRNTLEKYPDSLL---GSNEREFFYDED-SKEYFFDRDPDIFRHILNYYR 100
+NV G F T R TL + P S L + + D+D + Y DRDP F +LNY R
Sbjct: 16 LNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLR 75
Query: 101 TGKLHYPKHECLTSYDEELAFFGI 124
GKL K EE F+ I
Sbjct: 76 HGKLVINKDLAEEGVLEEAEFYNI 99
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 327 LVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
++F L + +I T+ FY+ V+G A W+++VT+TT+GYGD P+T GKI
Sbjct: 9 VLFVLTILTLISGTI-FYS--TVEGLRPID---ALWFSVVTLTTVGYGDFSPQTDFGKI 61
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 345 AEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGK 384
AE+ G S P A W+++ T TT+GYGD P T G+
Sbjct: 29 AERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGR 68
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
L + ++ + + AE+ G + P A W+ T TT+ YGD+ P T+ G++
Sbjct: 36 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVXYGDLYPVTLWGRL 90
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 327 LVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
++F L + +I T+ FY+ V+G A ++++VT+TT+GYGD P+T GKI
Sbjct: 9 VLFVLTILTLISGTI-FYS--TVEGLRPID---ALYFSVVTLTTVGYGDFSPQTDFGKI 61
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 328 VFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAG 383
+ L +A+II+ T F+ ++G ++T + ++T VT+ T+GYGD P T G
Sbjct: 13 ILLLVLAVIIYGTAGFHF---IEGESWT---VSLYWTFVTIATVGYGDYSPHTPLG 62
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 328 VFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAG 383
+ L +A+II+ T F+ ++G ++T + ++T VT+ T+GYGD P T G
Sbjct: 6 ILLLVLAVIIYGTAGFHF---IEGESWT---VSLYWTFVTIATVGYGDYSPHTPLG 55
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 328 VFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAG 383
+ L +A+II+ T F+ ++G ++T + ++T VT+ T+GYGD P T G
Sbjct: 6 ILLLVLAVIIYGTAGFHF---IEGESWT---VSLYWTFVTIATVGYGDYSPRTPLG 55
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 328 VFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAG 383
+ L +A+II+ T F+ ++G ++T + ++T VT+ T+GYGD P T G
Sbjct: 6 ILLLVLAVIIYGTAGFHF---IEGESWT---VSLYWTFVTIATVGYGDYSPHTPLG 55
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 327 LVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
++F L + +I T+ FY+ V+G I A F +++VT+TT+GYGD P+T GKI
Sbjct: 9 VLFVLTILTLISGTI-FYS--TVEG--LRPIDALF-FSVVTLTTVGYGDFSPQTDFGKI 61
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 36.6 bits (83), Expect = 0.036, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 327 LVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
++F L + +I T+ FY+ V+G A ++++VT+TT+G+GD P+T GKI
Sbjct: 9 VLFVLTILTLISGTI-FYS--TVEGLRPID---ALYFSVVTLTTVGFGDFSPQTDFGKI 61
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 328 VFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAG 383
+ L +A+II+ T F+ ++G ++T + ++T VT+ T+GYGD P T G
Sbjct: 23 ILLLVLAVIIYGTAGFHF---IEGESWT---VSLYWTFVTIATVGYGDYSPSTPLG 72
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 328 VFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAG 383
+ L +A+II+ T F+ ++G ++T + ++T VT+ T+GYGD P T G
Sbjct: 23 ILLLVLAVIIYGTAGFHF---IEGESWT---VSLYWTFVTIATVGYGDYSPSTPLG 72
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 36.2 bits (82), Expect = 0.043, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 327 LVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
++F L + +I T+ FY+ V+G A ++++VT+TT+GYG+ P+T GKI
Sbjct: 9 VLFVLTILTLISGTI-FYS--TVEGLRPID---ALYFSVVTLTTVGYGEFSPQTDFGKI 61
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 36.2 bits (82), Expect = 0.047, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 327 LVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
++F L + +I T+ FY+ V+G A ++++VT+TT+GYG+ P+T GKI
Sbjct: 9 VLFVLTILTLISGTI-FYS--TVEGLRPID---ALYFSVVTLTTVGYGNFSPQTDFGKI 61
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 301 FKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAA 360
F R Q L++L L CA F L M ++ +A++ Y +++G ++ +
Sbjct: 8 FLRGRARQNLKVL---LLYCA-------FLLVM-LLAYASIFRYLMWHLEGRAYSFMAGI 56
Query: 361 FWYTIVTMTTLGYGDMVPETIAG 383
+W TI MTTLG+GD+ E+ AG
Sbjct: 57 YW-TITVMTTLGFGDITFESDAG 78
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 301 FKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAA 360
F R Q L++L L CA F L M ++ +A++ Y +++G ++ +
Sbjct: 8 FLRGRARQNLKVL---LLYCA-------FLLVM-LLAYASIFRYLMWHLEGRAYSFMAGI 56
Query: 361 FWYTIVTMTTLGYGDMVPETIAG 383
+W TI MTTLG+GD+ E+ AG
Sbjct: 57 YW-TITVMTTLGFGDITFESDAG 78
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 35.8 bits (81), Expect = 0.061, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 328 VFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAG 383
+ L +A+II+ T F+ ++G ++T + ++T VT+ +GYGD P T G
Sbjct: 6 ILLLVLAVIIYGTAGFHF---IEGESWT---VSLYWTFVTIAAVGYGDYSPHTPLG 55
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 327 LVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
++F L + +I T+ FY+ V+G A ++++VT+TT+G GD P+T GKI
Sbjct: 9 VLFVLTILTLISGTI-FYS--TVEGLRPID---ALYFSVVTLTTVGDGDFSPQTDFGKI 61
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 330 SLAMAIII----FATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETI 381
SLA+ ++ FAT+ + AF++++ T+ T+GYGDM P+T+
Sbjct: 48 SLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTV 103
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 311 RILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTT 370
R+L L++ + ++F L + +I T+ FY+ V+G A ++++VT+TT
Sbjct: 10 RMLRACLRAWKDKEFQVLFVLTILTLISGTI-FYS--TVEGLRPID---ALYFSVVTLTT 63
Query: 371 LGYGDMVPETIAGKI 385
+G G+ P+T GKI
Sbjct: 64 VGAGNFSPQTDFGKI 78
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 311 RILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTT 370
R+L L++ + ++F L + +I T+ FY+ V+G A ++++VT+TT
Sbjct: 10 RMLRACLRAWKDKEFQVLFVLTILTLISGTI-FYS--TVEGLRPID---ALYFSVVTLTT 63
Query: 371 LGYGDMVPETIAGKI 385
+G G+ P+T GKI
Sbjct: 64 VGEGNFSPQTDFGKI 78
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 311 RILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTT 370
R+L L++ + ++F L + +I T+ FY+ V+G A ++++VT+TT
Sbjct: 10 RMLRACLRAWKDKEFQVLFVLTILTLISGTI-FYS--TVEGLRPID---ALYFSVVTLTT 63
Query: 371 LGYGDMVPETIAGKI 385
+G G+ P+T GKI
Sbjct: 64 VGNGNFSPQTDFGKI 78
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 32.7 bits (73), Expect = 0.51, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 311 RILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTT 370
R+L L++ + ++F L + +I T+ FY+ V+G A ++++VT+TT
Sbjct: 10 RMLRACLRAWKDKEFQVLFVLTILTLISGTI-FYS--TVEGLRPID---ALYFSVVTLTT 63
Query: 371 LGYGDMVPETIAGKI 385
+G G+ P+T GKI
Sbjct: 64 VGAGNFEPQTDFGKI 78
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 311 RILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTT 370
R+L L++ + ++F L + +I T+ FY+ V+G A ++++VT+TT
Sbjct: 10 RMLRACLRAWKDKEFQVLFVLTILTLISGTI-FYS--TVEGLRPID---ALYFSVVTLTT 63
Query: 371 LGYGDMVPETIAGKI 385
+G G+ P+T GKI
Sbjct: 64 VGDGNFSPQTDFGKI 78
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 359 AAFWYTIVTMTTLGYGDMVPETI 381
AF++++ T+ T+GYGDM P+T+
Sbjct: 99 GAFFFSVETLATVGYGDMHPQTV 121
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 359 AAFWYTIVTMTTLGYGDMVPETI 381
AF++++ T+ T+GYGDM P+T+
Sbjct: 99 GAFFFSVETLATVGYGDMHPQTV 121
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 327 LVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
++F L + +I T+ FY+ V+G A ++++VT+TT+G G+ P+T GKI
Sbjct: 8 VLFVLTILTLISGTI-FYS--TVEGLRPID---ALYFSVVTLTTVGDGNFSPQTDFGKI 60
>pdb|3ECM|A Chain A, Crystal Structure Of The Unliganded Pde8a Catalytic Domain
pdb|3ECN|A Chain A, Crystal Structure Of Pde8a Catalytic Domain In Complex
With Ibmx
pdb|3ECN|B Chain B, Crystal Structure Of Pde8a Catalytic Domain In Complex
With Ibmx
Length = 338
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 177 NP-HTSTAALVFYYVTGFFIAVS-----------VMANVVETVPCGHRPGRAGSLPCGER 224
NP H ST + + T +F++ V A + T+ PGR S C
Sbjct: 72 NPYHNSTHSADVLHATAYFLSKERIKETLDPIDEVAALIAATIHDVDHPGRTNSFLCNAG 131
Query: 225 YKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSV 261
++ DTA + A +L D+C +++
Sbjct: 132 SELAILYNDTAVLESHHAALAFQLTTGDDKCNIFKNM 168
>pdb|1HO2|A Chain A, Nmr Structure Of The Potassium Channel Fragment L45 In
Micelles
pdb|1HO7|A Chain A, Nmr Structure Of The Potassium Channel Fragment L45 In Tfe
Length = 20
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 306 HSQGLRILGYTLKSCASELG 325
HS+GL+ILG TLK+ ELG
Sbjct: 1 HSKGLQILGRTLKASMRELG 20
>pdb|2H8P|C Chain C, Structure Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HFE|C Chain C, Rb+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HG5|C Chain C, Cs+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
Length = 57
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGY 373
L + ++ + + AE+ G + P A W+ T TT+GY
Sbjct: 15 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY 57
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 360 AFWYTIVTMTTLGYGDMVPETIAGKI 385
A ++++VT+TT+G G+ P+T GK+
Sbjct: 56 ALYFSVVTLTTVGDGNFSPQTDFGKV 81
>pdb|3JYC|A Chain A, Crystal Structure Of The Eukaryotic Strong
Inward-Rectifier K+ Channel Kir2.2 At 3.1 Angstrom
Resolution
pdb|3SPC|A Chain A, Inward Rectifier Potassium Channel Kir2.2 In Complex With
Dioctanoylglycerol Pyrophosphate (Dgpp)
pdb|3SPI|A Chain A, Inward Rectifier Potassium Channel Kir2.2 In Complex With
Pip2
Length = 343
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 324 LGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIP---------AAFWYTIVTMTTLGYG 374
L FLV L +I + + + + G + T P AAF ++I T TT+GYG
Sbjct: 53 LAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYG 112
>pdb|3SPH|A Chain A, Inward Rectifier Potassium Channel Kir2.2 I223l Mutant In
Complex With Pip2
pdb|3SPJ|A Chain A, Apo Inward Rectifier Potassium Channel Kir2.2 I223l Mutant
Length = 343
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 324 LGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIP---------AAFWYTIVTMTTLGYG 374
L FLV L +I + + + + G + T P AAF ++I T TT+GYG
Sbjct: 53 LAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYG 112
>pdb|3SPG|A Chain A, Inward Rectifier Potassium Channel Kir2.2 R186a Mutant In
Complex With Pip2
Length = 343
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 324 LGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIP---------AAFWYTIVTMTTLGYG 374
L FLV L +I + + + + G + T P AAF ++I T TT+GYG
Sbjct: 53 LAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYG 112
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 360 AFWYTIVTMTTLGYGDMVP 378
AF++++ TM T+GYG ++P
Sbjct: 86 AFFFSVQTMATIGYGKLIP 104
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 360 AFWYTIVTMTTLGYGDMVP 378
AF++++ TM T+GYG ++P
Sbjct: 86 AFFFSVQTMATIGYGKLIP 104
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 360 AFWYTIVTMTTLGYGDMVP 378
AF++++ TM T+GYG ++P
Sbjct: 86 AFFFSVQTMATIGYGKLIP 104
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 360 AFWYTIVTMTTLGYGDMVP 378
AF++++ TM T+GYG ++P
Sbjct: 86 AFFFSVQTMATIGYGKLIP 104
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 360 AFWYTIVTMTTLGYGDMVP 378
AF++++ TM T+GYG ++P
Sbjct: 86 AFFFSVQTMATIGYGKLIP 104
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 360 AFWYTIVTMTTLGYGDMVP 378
AF++++ TM T+GYG ++P
Sbjct: 86 AFFFSVQTMATIGYGKLIP 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,371,138
Number of Sequences: 62578
Number of extensions: 550117
Number of successful extensions: 1484
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1366
Number of HSP's gapped (non-prelim): 100
length of query: 542
length of database: 14,973,337
effective HSP length: 104
effective length of query: 438
effective length of database: 8,465,225
effective search space: 3707768550
effective search space used: 3707768550
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)