Query psy13459
Match_columns 542
No_of_seqs 494 out of 3276
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 19:55:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4390|consensus 100.0 6E-125 1E-129 919.7 4.2 486 2-541 3-489 (632)
2 KOG3713|consensus 100.0 5.6E-89 1.2E-93 695.5 25.0 393 37-429 27-450 (477)
3 KOG1545|consensus 100.0 7.7E-77 1.7E-81 577.1 5.5 368 38-421 58-458 (507)
4 KOG1420|consensus 100.0 8.9E-37 1.9E-41 311.5 9.2 300 219-537 154-486 (1103)
5 KOG1419|consensus 100.0 4E-32 8.7E-37 278.1 16.4 256 162-429 72-342 (654)
6 PLN03192 Voltage-dependent pot 99.9 1.1E-24 2.5E-29 250.0 16.6 252 170-436 48-330 (823)
7 PF02214 BTB_2: BTB/POZ domain 99.9 2.6E-25 5.7E-30 186.9 3.2 90 43-132 1-94 (94)
8 KOG0498|consensus 99.8 4.8E-20 1E-24 201.6 20.8 254 175-436 69-374 (727)
9 KOG2302|consensus 99.8 3E-19 6.4E-24 192.1 16.1 246 162-418 1093-1397(1956)
10 KOG2301|consensus 99.8 3.3E-19 7.1E-24 208.7 17.1 228 161-413 426-666 (1592)
11 PF00520 Ion_trans: Ion transp 99.8 3.3E-19 7.1E-24 169.0 12.5 175 231-405 1-200 (200)
12 KOG0501|consensus 99.8 2.6E-18 5.7E-23 177.3 15.9 237 183-437 216-504 (971)
13 KOG2714|consensus 99.8 2.9E-19 6.3E-24 179.8 6.0 102 36-137 6-111 (465)
14 KOG2301|consensus 99.7 5.1E-18 1.1E-22 198.8 13.1 234 164-417 1143-1408(1592)
15 KOG2715|consensus 99.7 7.1E-19 1.5E-23 155.1 3.5 90 38-128 18-111 (210)
16 KOG2716|consensus 99.7 1.3E-18 2.9E-23 165.6 4.4 96 39-137 3-101 (230)
17 KOG2302|consensus 99.7 2.8E-16 6.1E-21 169.4 12.8 222 185-419 1441-1694(1956)
18 KOG1665|consensus 99.7 4.7E-17 1E-21 150.4 4.1 91 38-128 6-100 (302)
19 KOG2723|consensus 99.7 6.8E-17 1.5E-21 152.8 4.7 90 39-128 7-99 (221)
20 KOG3193|consensus 99.6 1.7E-16 3.6E-21 162.8 6.4 282 228-522 91-401 (1087)
21 KOG0500|consensus 99.6 1.7E-14 3.6E-19 147.9 15.5 205 223-436 25-262 (536)
22 PRK10537 voltage-gated potassi 99.5 1.7E-13 3.8E-18 143.4 11.6 154 236-409 66-221 (393)
23 PF07885 Ion_trans_2: Ion chan 99.4 1.1E-12 2.4E-17 106.3 9.4 76 332-410 3-78 (79)
24 PF11601 Shal-type: Shal-type 99.4 5.8E-14 1.3E-18 84.7 1.0 28 2-29 1-28 (28)
25 KOG0499|consensus 99.4 9.6E-12 2.1E-16 129.7 17.4 183 227-419 261-465 (815)
26 PLN03223 Polycystin cation cha 99.2 1.6E-10 3.4E-15 130.7 13.9 123 292-415 1298-1428(1634)
27 PF11879 DUF3399: Domain of un 99.1 2.1E-11 4.6E-16 100.0 2.4 45 497-541 2-47 (104)
28 KOG4404|consensus 98.7 8.1E-08 1.8E-12 94.7 9.4 88 322-416 158-254 (350)
29 PF08016 PKD_channel: Polycyst 98.6 4E-07 8.6E-12 97.5 13.3 179 230-411 214-424 (425)
30 KOG3684|consensus 98.5 1.8E-06 4E-11 88.9 13.1 88 327-414 257-345 (489)
31 KOG3840|consensus 98.4 2.7E-07 5.9E-12 89.8 4.7 96 39-134 94-194 (438)
32 KOG3599|consensus 98.4 4.9E-06 1.1E-10 94.0 14.5 185 228-418 467-688 (798)
33 PF01007 IRK: Inward rectifier 98.4 8.9E-07 1.9E-11 90.9 7.9 87 327-413 41-143 (336)
34 TIGR00870 trp transient-recept 98.3 1.1E-05 2.4E-10 92.6 17.4 182 235-419 397-625 (743)
35 KOG1418|consensus 98.3 3.3E-06 7.1E-11 89.8 9.7 67 351-417 110-176 (433)
36 smart00225 BTB Broad-Complex, 98.2 8.7E-07 1.9E-11 72.0 2.7 84 43-128 2-86 (90)
37 KOG4404|consensus 97.7 8.2E-05 1.8E-09 73.8 6.8 56 355-410 79-134 (350)
38 KOG3614|consensus 97.7 0.0023 5E-08 74.2 18.6 183 165-368 778-974 (1381)
39 KOG0510|consensus 97.5 0.011 2.4E-07 65.5 20.2 171 239-413 575-761 (929)
40 KOG1418|consensus 97.2 6.6E-05 1.4E-09 79.8 -0.7 51 355-405 241-299 (433)
41 KOG3609|consensus 97.2 0.0072 1.6E-07 67.4 14.5 179 239-421 396-623 (822)
42 KOG3676|consensus 96.9 0.082 1.8E-06 59.0 19.6 99 320-418 539-656 (782)
43 KOG3827|consensus 96.9 0.0022 4.7E-08 65.4 6.7 87 328-414 70-172 (400)
44 KOG3533|consensus 96.6 0.099 2.1E-06 60.6 17.1 113 308-420 2406-2580(2706)
45 PF00060 Lig_chan: Ligand-gate 92.4 0.21 4.6E-06 44.7 5.0 57 355-412 43-99 (148)
46 PLN03223 Polycystin cation cha 87.1 29 0.00063 41.9 17.3 193 225-419 1174-1428(1634)
47 PHA03098 kelch-like protein; P 87.0 0.42 9E-06 52.8 2.7 85 38-128 9-94 (534)
48 PF00651 BTB: BTB/POZ domain; 77.3 0.64 1.4E-05 39.2 -0.4 87 41-128 11-100 (111)
49 KOG1053|consensus 76.9 12 0.00026 42.9 9.0 53 356-410 609-663 (1258)
50 KOG4440|consensus 76.9 4.8 0.0001 44.1 5.8 81 329-409 574-666 (993)
51 KOG1545|consensus 76.2 4.6 0.0001 41.4 5.2 46 289-335 323-368 (507)
52 PF10011 DUF2254: Predicted me 74.4 25 0.00054 37.0 10.5 100 311-410 48-154 (371)
53 COG0168 TrkG Trk-type K+ trans 73.6 14 0.00031 40.5 8.6 47 356-402 424-479 (499)
54 PF00520 Ion_trans: Ion transp 73.1 15 0.00033 33.6 7.8 80 225-332 29-109 (200)
55 KOG1052|consensus 72.9 11 0.00024 42.8 7.9 57 354-411 379-435 (656)
56 PRK05482 potassium-transportin 66.8 55 0.0012 36.2 11.1 99 308-406 399-504 (559)
57 KOG3733|consensus 64.8 44 0.00096 35.3 9.3 107 302-413 392-511 (566)
58 KOG3713|consensus 61.8 1.1E+02 0.0023 33.1 11.8 62 228-311 274-335 (477)
59 PHA02790 Kelch-like protein; P 60.8 3.5 7.6E-05 45.0 0.7 83 44-133 25-113 (480)
60 PHA02713 hypothetical protein; 60.5 4.5 9.8E-05 45.0 1.6 85 42-133 27-116 (557)
61 PLN03192 Voltage-dependent pot 55.8 4E+02 0.0086 31.2 18.5 24 286-309 168-191 (823)
62 KOG1054|consensus 54.6 13 0.00028 40.7 3.6 54 356-410 595-648 (897)
63 PRK10750 potassium transporter 46.8 88 0.0019 34.2 8.7 46 356-401 421-473 (483)
64 COG1226 Kch Kef-type K+ transp 44.9 15 0.00032 33.9 2.1 45 354-398 115-159 (212)
65 KOG4441|consensus 44.3 11 0.00023 42.2 1.2 89 42-133 38-127 (571)
66 COG0581 PstA ABC-type phosphat 43.9 92 0.002 31.6 7.7 52 363-416 53-104 (292)
67 PF02386 TrkH: Cation transpor 39.7 67 0.0015 33.4 6.3 38 357-394 295-338 (354)
68 KOG3088|consensus 37.4 4.5E+02 0.0098 26.5 11.7 15 384-398 238-252 (313)
69 TIGR00933 2a38 potassium uptak 36.7 62 0.0013 34.2 5.5 41 354-394 229-271 (390)
70 PF05297 Herpes_LMP1: Herpesvi 33.9 14 0.0003 36.8 0.0 9 186-194 26-34 (381)
71 COG3817 Predicted membrane pro 30.9 1.2E+02 0.0025 30.1 5.7 43 351-394 27-69 (313)
72 KOG4298|consensus 30.7 4.6E+02 0.01 24.7 9.9 31 384-414 183-213 (245)
73 TIGR00933 2a38 potassium uptak 29.5 1.5E+02 0.0033 31.2 7.1 39 356-394 348-389 (390)
74 KOG2243|consensus 28.5 1.7E+02 0.0038 35.7 7.3 117 299-415 4794-4928(5019)
75 KOG3599|consensus 26.8 7.1E+02 0.015 29.2 12.1 27 225-251 496-522 (798)
76 PF08016 PKD_channel: Polycyst 26.0 5.6E+02 0.012 27.2 10.7 9 47-55 45-53 (425)
77 PF06143 Baculo_11_kDa: Baculo 25.9 3.7E+02 0.0079 21.9 7.2 9 399-407 50-58 (84)
78 PF02519 Auxin_inducible: Auxi 25.6 61 0.0013 27.3 2.5 59 39-99 37-99 (100)
79 KOG3643|consensus 25.2 1.1E+02 0.0025 32.5 4.9 48 363-410 280-329 (459)
80 KOG0783|consensus 25.0 27 0.00059 39.9 0.4 65 42-107 560-637 (1267)
81 COG4325 Predicted membrane pro 24.9 8.5E+02 0.018 25.8 12.8 27 355-381 131-162 (464)
82 COG1584 Predicted membrane pro 23.6 6.2E+02 0.014 24.1 8.9 73 334-407 63-139 (207)
83 PF06512 Na_trans_assoc: Sodiu 23.4 21 0.00047 34.8 -0.7 28 161-195 212-239 (239)
84 PF04791 LMBR1: LMBR1-like mem 23.3 4.8E+02 0.01 28.1 9.8 22 389-410 173-194 (471)
85 KOG1608|consensus 23.2 8E+02 0.017 24.9 10.2 16 363-378 264-279 (374)
86 PF07077 DUF1345: Protein of u 23.0 6.3E+02 0.014 23.6 11.8 49 355-403 131-179 (180)
87 PF12926 MOZART2: Mitotic-spin 21.8 32 0.0007 28.1 0.1 19 85-103 39-57 (88)
No 1
>KOG4390|consensus
Probab=100.00 E-value=5.6e-125 Score=919.70 Aligned_cols=486 Identities=77% Similarity=1.278 Sum_probs=460.0
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeCCeEEEeeHHHHhcCCCCccccCCCCCccCCCCc
Q psy13459 2 ASVAAWLPFARAAAIGWVPIATHPLPPPPIPKDRRKADDEKLLINVSGRRFETWRNTLEKYPDSLLGSNEREFFYDEDSK 81 (542)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~ 81 (542)
|||||||||||||||||+|++++|||++|. ...+..|+.+.|||+|+||+||+.||.|||||+||+.+++.+||+++|
T Consensus 3 agvAaWLPFARAAAiGW~Pva~~PmP~aP~--~~~~r~De~lvlNvSGrRFeTWknTLeryPdTLLGSsEkeFFy~~dt~ 80 (632)
T KOG4390|consen 3 AGVAAWLPFARAAAIGWMPVAQQPMPPAPG--VKAKRQDELLVLNVSGRRFETWKNTLERYPDTLLGSSEKEFFYDEDTG 80 (632)
T ss_pred chhhhhchhhHhhhccceecccCCCCCCch--hhhhccCcEEEEeccccchhHHHhHHHhCchhhhCCcchheeecCCcc
Confidence 569999999999999999999999999884 555668999999999999999999999999999999999999999999
Q ss_pred eEEEecCCcchHHhhcccccCcccCCCCCCHHHHHHHHhhcCCCCccccccccchhhhhhhhhHHhhhhcccccCCCC-C
Q psy13459 82 EYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQ-N 160 (542)
Q Consensus 82 ~~f~DRd~~~F~~Il~~~r~g~l~~p~~~~~~~~~~E~~f~~l~~~~~~~cC~e~~~~~~~e~~~~~~~~~~~e~~~~-~ 160 (542)
||||||||++||+|||||||||||+|+..|+..+.||+.||||-++.+++||+|+|.++|+||+|++.||+..|+... .
T Consensus 81 eYFFDRDPdiFRhvLnFYRTGkLHyPR~ECi~AyDeELaF~Gl~PeligDCCyEeYkDrkrENaERL~dd~~~e~ag~~~ 160 (632)
T KOG4390|consen 81 EYFFDRDPDIFRHVLNFYRTGKLHYPRHECISAYDEELAFYGLVPELIGDCCYEEYKDRKRENAERLQDDEDAENAGGPA 160 (632)
T ss_pred cccccCChHHHHHHHHHhhcCcccCchHHHHHHhhhhhhHhcccHHHHhhhhhHHHhhhhhhhHHHhhchhhhhhcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877666533 3
Q ss_pred CchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHhhhheeeecccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHH
Q psy13459 161 LPQLTNIRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIF 240 (542)
Q Consensus 161 ~~~~~~~r~~l~~~le~P~ss~~a~~f~~~~~~lI~ls~i~~~~et~~~~~~~~~~~~~~~~~~~~~~l~~~e~v~~~iF 240 (542)
.+....+|+++|+.+|||++|..+.+|++++.++|.+|++..++||+|+...++.....+|++.|...++.+|++|+.+|
T Consensus 161 ~p~~ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIF 240 (632)
T KOG4390|consen 161 LPAGLSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIF 240 (632)
T ss_pred CcccchHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEe
Confidence 44457899999999999999999999999999999999999999999999888877889999999999999999999999
Q ss_pred HHHHHHHHhhCccchhhhccccchhhhhhhcccceeeccccCCchhhhHHHHHHHHHHHHHHhhhhccchhhhhhhhhcc
Q psy13459 241 TAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSC 320 (542)
Q Consensus 241 ~~E~~lr~~~a~~~~~y~~s~~ni~Dli~iip~~i~~~~~~~~~~~~~l~~lR~lRllRilkl~r~~~~l~~l~~~l~~s 320 (542)
+.||+||+++|+++.+|+++.+.+||+++|+|+|+++++..+.++++++..||++|++||||+.||++++|+|+++|+++
T Consensus 241 T~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSC 320 (632)
T KOG4390|consen 241 TGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSC 320 (632)
T ss_pred eHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEEEeeeeeeeeeecccccccchhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHH
Q psy13459 321 ASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIAL 400 (542)
Q Consensus 321 ~~~l~~ll~~l~~~i~ifa~l~~~~e~~~~~~~f~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al 400 (542)
..+++++++.+.+.++|||.++||.|++.+.++|+++|.|||++++||||.||||++|.|.+|++|+.+|.+.|++++++
T Consensus 321 ASELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIAL 400 (632)
T KOG4390|consen 321 ASELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIAL 400 (632)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccCCCCCCCCCCCCCCCCCCCccccccccccccccCcccCccchHHH
Q psy13459 401 PVPVIVSNFSRIYHQNQRADKRKAQRDREFVELEVPYNGQAKRPGSPSPLLSPSHSVISTANIFQSCCGRCCGQRYQKAR 480 (542)
Q Consensus 401 ~i~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~Gs~~~~~~ 480 (542)
++++|++||+++|+++|+..|+.+|+ +++
T Consensus 401 PVPvIVSNFSRIYHQNQRADKRrAQk---------------------------------------------------KaR 429 (632)
T KOG4390|consen 401 PVPVIVSNFSRIYHQNQRADKRRAQK---------------------------------------------------KAR 429 (632)
T ss_pred cccEEEechhHHHhhhhhhhHHHHHH---------------------------------------------------Hhh
Confidence 99999999999999999998887776 788
Q ss_pred HHHHHHHhcccceeecccchhhHHHHHHhhcCcccccccCCCChhHHhhhhhhhhhhhccC
Q psy13459 481 LARIRIAKASSGAAFVSKKKAAEARMAAQESGLEIDENYREEDIFEIQHHHLLRCLEKTTN 541 (542)
Q Consensus 481 l~Rvr~~~a~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~qhhhll~cle~tt~ 541 (542)
|+|+|+.+..+...+.+++.++...+..+ ...+.....|+.+++|.||||||||||||||
T Consensus 430 LARIR~aKsgs~nA~~~~Krng~l~~~~~-~~~e~~~~~r~~s~fE~QHHHLLhCLEKtT~ 489 (632)
T KOG4390|consen 430 LARIRLAKSGSTNAYLQSKRNGLLEDSLS-GEHEQALCVRNRSAFEQQHHHLLHCLEKTTN 489 (632)
T ss_pred hhheeehhcccchHHHhhhhcchhhhhhc-cchhHHhhhcchhHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999987653333 2345557889999999999999999999996
No 2
>KOG3713|consensus
Probab=100.00 E-value=5.6e-89 Score=695.46 Aligned_cols=393 Identities=41% Similarity=0.731 Sum_probs=345.3
Q ss_pred CCCCceEEEEeCCeEEEeeHHHHhcCCCCccccCCC----------CCccCCCCceEEEecCCcchHHhhcccccCcccC
Q psy13459 37 KADDEKLLINVSGRRFETWRNTLEKYPDSLLGSNER----------EFFYDEDSKEYFFDRDPDIFRHILNYYRTGKLHY 106 (542)
Q Consensus 37 ~~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~----------~~~~~~~~~~~f~DRd~~~F~~Il~~~r~g~l~~ 106 (542)
...+++|+|||||.+|++.++||.++|.|+|+++.. -+.||+.++||||||||.+|++|||||||||||+
T Consensus 27 ~~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfFDR~P~~F~~Vl~fYrtGkLH~ 106 (477)
T KOG3713|consen 27 GALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFFDRHPGAFAYVLNFYRTGKLHV 106 (477)
T ss_pred CCcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeeeccChHHHHHHHHHHhcCeecc
Confidence 456679999999999999999999999999998522 2479999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhcCCCCccccccccchhhhhhhhhHHhhhh---ccc----ccCCCCCCchhhHHHHHHHhhhcCCC
Q psy13459 107 PKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRKRENAERLMD---DKL----SENGDQNLPQLTNIRQKMWRAFENPH 179 (542)
Q Consensus 107 p~~~~~~~~~~E~~f~~l~~~~~~~cC~e~~~~~~~e~~~~~~~---~~~----~e~~~~~~~~~~~~r~~l~~~le~P~ 179 (542)
|.++|...|.+|++||||++..+++|||..|.++++|..|.... ++. .+..+.+..++.++|+++|.++|+|.
T Consensus 107 p~~vC~~~F~eEL~yWgI~~~~le~CC~~~~~~~~ee~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~rlW~~~E~P~ 186 (477)
T KOG3713|consen 107 PADVCPLSFEEELDYWGIDEAHLESCCWMRYRQRREELLEELDRPDPDEEELREREGPEFDGGRCGRLRRRLWALLENPG 186 (477)
T ss_pred ccccchHHHHHHHHHhCCChhhhhHHhHHHHhhcHHHHhhhhcccCchhhhHHhhccccccCCChhhHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999988655443211 010 11122234567789999999999999
Q ss_pred CchhHHHHHHHHHHHHHHhhhheeeecccCCCCCCCCCC------CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhCcc
Q psy13459 180 TSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGS------LPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPD 253 (542)
Q Consensus 180 ss~~a~~f~~~~~~lI~ls~i~~~~et~~~~~~~~~~~~------~~~~~~~~~~l~~~e~v~~~iF~~E~~lr~~~a~~ 253 (542)
||..|++|..+++++|++|++.+|+.|+|+++.+..... ......-...+.++|++|++|||+|+++|+..+++
T Consensus 187 SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~WFT~E~llR~~~~P~ 266 (477)
T KOG3713|consen 187 SSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIAWFTFEYLLRFLVAPN 266 (477)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCch
Confidence 999999999999999999999999999999987644321 00112234578999999999999999999999999
Q ss_pred chhhhccccchhhhhhhcccceeeccccC--------CchhhhHHHHHHHHHHHHHHhhhhccchhhhhhhhhccchhhH
Q psy13459 254 RCKFVRSVMSIIDVVAILPYYIGLGITDN--------DDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELG 325 (542)
Q Consensus 254 ~~~y~~s~~ni~Dli~iip~~i~~~~~~~--------~~~~~~l~~lR~lRllRilkl~r~~~~l~~l~~~l~~s~~~l~ 325 (542)
|++|+|++.|+||+++|+|+|+++.+... .....++++||++|++|++||.||+.+||.++.|+++|.++++
T Consensus 267 k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~Elg 346 (477)
T KOG3713|consen 267 KLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELG 346 (477)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998765421 2334678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCCCccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy13459 326 FLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVI 405 (542)
Q Consensus 326 ~ll~~l~~~i~ifa~l~~~~e~~~~~~~f~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i 405 (542)
.+++++.+++.+||.+.|++|++.++++|+|+|.++|||+||||||||||++|.|..||+++..++++|++++|+||++|
T Consensus 347 lLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiI 426 (477)
T KOG3713|consen 347 LLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITII 426 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q psy13459 406 VSNFSRIYHQNQRADKRKAQRDRE 429 (542)
Q Consensus 406 ~~~f~~~~~~~~~~~~~~~~~~~~ 429 (542)
++||++.|++.+.+++..+++++.
T Consensus 427 v~nF~~~y~~~k~~~~~~~~~~~~ 450 (477)
T KOG3713|consen 427 VNNFSMYYSELKAREKAPKRREAL 450 (477)
T ss_pred hhhHHHHHHHHHHHHHhhhhhccc
Confidence 999999998887776655554433
No 3
>KOG1545|consensus
Probab=100.00 E-value=7.7e-77 Score=577.06 Aligned_cols=368 Identities=40% Similarity=0.739 Sum_probs=324.5
Q ss_pred CCCceEEEEeCCeEEEeeHHHHhcCCCCccccC-CCCCccCCCCceEEEecCCcchHHhhccccc-CcccCCCCCCHHHH
Q psy13459 38 ADDEKLLINVSGRRFETWRNTLEKYPDSLLGSN-EREFFYDEDSKEYFFDRDPDIFRHILNYYRT-GKLHYPKHECLTSY 115 (542)
Q Consensus 38 ~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~-~~~~~~~~~~~~~f~DRd~~~F~~Il~~~r~-g~l~~p~~~~~~~~ 115 (542)
..+++|+|||+|.||+|..+||.+||+|+||.. .+..++|+.++|||||||...|..||.||++ |+|..|.+++++.|
T Consensus 58 ~~~ervvINisGlRFeTql~TL~qfP~TLLGDp~kR~rfFdplrNEyFFDRnRpSFdaILYyYQSGGRlrRPvnVPlDiF 137 (507)
T KOG1545|consen 58 CCCERVVINISGLRFETQLKTLAQFPNTLLGDPAKRMRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIF 137 (507)
T ss_pred ccccEEEEEeccceehHHHHHHhhCchhhcCCHHHhcccccccchhhcccCCCCccceEEEEeecCceecCCccccHHHH
Confidence 456899999999999999999999999999987 4567999999999999999999999999998 78999999999999
Q ss_pred HHHHhhcCCCCccccccccchhhhhhhhhHHhhhhcccccCCCCCCchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHHH
Q psy13459 116 DEELAFFGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLPQLTNIRQKMWRAFENPHTSTAALVFYYVTGFFI 195 (542)
Q Consensus 116 ~~E~~f~~l~~~~~~~cC~e~~~~~~~e~~~~~~~~~~~e~~~~~~~~~~~~r~~l~~~le~P~ss~~a~~f~~~~~~lI 195 (542)
.+|++||+|.++.+ ++..+|+.-...++...+.+.+++++|.++|.|+||..|+...++++++|
T Consensus 138 ~eEirFyqlG~eam----------------e~FredEG~~~~eE~plP~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVI 201 (507)
T KOG1545|consen 138 LEEIRFYQLGDEAM----------------ERFREDEGFIKPEERPLPRNEFQRQVWLLFEYPESSGPARIIAIVSVLVI 201 (507)
T ss_pred HHHHHHHHhhHHHH----------------HHHHhhcCCCCcccccCCcchHHhhhhheeecccccCCeeeeeehhHHHH
Confidence 99999999965543 34444444333333445678999999999999999999999999999999
Q ss_pred HHhhhheeeecccCCCCCC-------------CCCC-------CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhCccch
Q psy13459 196 AVSVMANVVETVPCGHRPG-------------RAGS-------LPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRC 255 (542)
Q Consensus 196 ~ls~i~~~~et~~~~~~~~-------------~~~~-------~~~~~~~~~~l~~~e~v~~~iF~~E~~lr~~~a~~~~ 255 (542)
++|++.+|+||+|+++... ..++ ......++..++++|+.|++||++|+++||+++++|.
T Consensus 202 liSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~ 281 (507)
T KOG1545|consen 202 LISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLGDTKFTDPFFIVETLCIIWFTFELLVRFFACPSKA 281 (507)
T ss_pred HHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCcccccccccccCCchHhHHHHHHHHHhHHHHHHHhcCccHH
Confidence 9999999999999886430 0000 0113346788999999999999999999999999999
Q ss_pred hhhccccchhhhhhhcccceeecccc------C---C--chhhhHHHHHHHHHHHHHHhhhhccchhhhhhhhhccchhh
Q psy13459 256 KFVRSVMSIIDVVAILPYYIGLGITD------N---D--DVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASEL 324 (542)
Q Consensus 256 ~y~~s~~ni~Dli~iip~~i~~~~~~------~---~--~~~~~l~~lR~lRllRilkl~r~~~~l~~l~~~l~~s~~~l 324 (542)
.|+++.+|+||+++|+|+++.+.... + . ....++|++|++|++|+|||.||+++|++|++|++.|++++
T Consensus 282 ~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrEl 361 (507)
T KOG1545|consen 282 TFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMREL 361 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999775421 1 1 12346889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q psy13459 325 GFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPV 404 (542)
Q Consensus 325 ~~ll~~l~~~i~ifa~l~~~~e~~~~~~~f~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~ 404 (542)
+++++++++++++||..+|+.|.+++.++|.|+|+||||++||||||||||++|.|..||+++++|.|.|++.+|+++++
T Consensus 362 gLLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPV 441 (507)
T KOG1545|consen 362 GLLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPV 441 (507)
T ss_pred HHHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy13459 405 IVSNFSRIYHQNQRADK 421 (542)
Q Consensus 405 i~~~f~~~~~~~~~~~~ 421 (542)
|++||...|+++.+.++
T Consensus 442 IVsNFnyFYhrEte~ee 458 (507)
T KOG1545|consen 442 IVSNFNYFYHRETEGEE 458 (507)
T ss_pred EEecccceeeccccchh
Confidence 99999999987665443
No 4
>KOG1420|consensus
Probab=100.00 E-value=8.9e-37 Score=311.52 Aligned_cols=300 Identities=24% Similarity=0.299 Sum_probs=237.7
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhcccceeeccccCCchhhhHHHHHHHHHH
Q psy13459 219 LPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVF 298 (542)
Q Consensus 219 ~~~~~~~~~~l~~~e~v~~~iF~~E~~lr~~~a~~~~~y~~s~~ni~Dli~iip~~i~~~~~~~~~~~~~l~~lR~lRll 298 (542)
..|..|+..+-..+|..|+++|.+.+++||++|.++..||.....++|++.+-|.++.+.+..+ +.-||++|.+
T Consensus 154 e~cq~w~~~~tqqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvsiyl~r~------wlglrflral 227 (1103)
T KOG1420|consen 154 ETCQNWYKDFTQQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYLNRS------WLGLRFLRAL 227 (1103)
T ss_pred HhhhhhhhChHHHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheEEEeccc------hHHHHHHHHH
Confidence 3477888889999999999999999999999999999999999999999999999998876532 2236777777
Q ss_pred HHHHhhhhccchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhhhccCCCC-CCC-----CccchhhhHHHhhhhccc
Q psy13459 299 RIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDG-TNF-----TSIPAAFWYTIVTMTTLG 372 (542)
Q Consensus 299 Rilkl~r~~~~l~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~~~-~~f-----~s~~~a~y~a~vTltTVG 372 (542)
|++.+....+.++++.. ++...+..++-+++-.++..|.+++.+|+..++ .+| -+|+++.|+.++||+|||
T Consensus 228 rlmtvpdilqylnilkt---sssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvg 304 (1103)
T KOG1420|consen 228 RLMTVPDILQYLNILKT---SSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVG 304 (1103)
T ss_pred HhccHHHHHHHHHHHhc---cchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeecc
Confidence 77777666666555432 344455555554445555666788888886543 344 368899999999999999
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH---------------------HHHHHHHHHHHhHH
Q psy13459 373 YGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRI--YHQ---------------------NQRADKRKAQRDRE 429 (542)
Q Consensus 373 YGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~~~--~~~---------------------~~~~~~~~~~~~~~ 429 (542)
|||++..|..||+|.++++++|+.+|+..++-|.+.+... |.. -....+...++.+.
T Consensus 305 ygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehgkkhivvcghityesvshflkdflhedrd 384 (1103)
T KOG1420|consen 305 YGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHGKKHIVVCGHITYESVSHFLKDFLHEDRD 384 (1103)
T ss_pred ccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcCCeeEEEecceeHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999998877532 111 11123444555566
Q ss_pred HHhcccCCCCCCCCCCCCCCCCCCCccccccccccccccCcccCccchHHHHHHHHHHhcccceeecccchhhHHHHHHh
Q psy13459 430 FVELEVPYNGQAKRPGSPSPLLSPSHSVISTANIFQSCCGRCCGQRYQKARLARIRIAKASSGAAFVSKKKAAEARMAAQ 509 (542)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~Gs~~~~~~l~Rvr~~~a~~~~~l~~~~~~~~~~~d~~ 509 (542)
.++.++.+.++....- ....++++| +++++||| |+++++.||+||++++|++|++|+++||.|||+||++
T Consensus 385 dvdvevvflhr~~pdl-eleglfkrh--ft~veffq-------gtvmnp~dl~rvki~~adaclvlankyc~dpdaedaa 454 (1103)
T KOG1420|consen 385 DVDVEVVFLHRISPDL-ELEGLFKRH--FTQVEFFQ-------GTVMNPHDLARVKIESADACLVLANKYCADPDAEDAA 454 (1103)
T ss_pred ccceEEEEEecCCCCc-chHHHHhhh--eeeEEEec-------ccccChhhhhheeccccceeeeecccccCCCChhhhh
Confidence 6666666665532111 112347888 88999999 9999999999999999999999999999999999998
Q ss_pred --hcCcccccccCCCCh--hHHhhhhhhhhhh
Q psy13459 510 --ESGLEIDENYREEDI--FEIQHHHLLRCLE 537 (542)
Q Consensus 510 --~~~~~~~~~~~~~~~--~e~qhhhll~cle 537 (542)
|++++|+||++++|+ +.+|+|++.+-|-
T Consensus 455 nimrvisiknys~dirvi~qlmqyhnkaylln 486 (1103)
T KOG1420|consen 455 NIMRVISIKNYSPDIRVITQLMQYHNKAYLLN 486 (1103)
T ss_pred hheEEEEeccCCCchhHHHHHHHhhchheeec
Confidence 999999999999998 9999999988764
No 5
>KOG1419|consensus
Probab=99.98 E-value=4e-32 Score=278.14 Aligned_cols=256 Identities=22% Similarity=0.448 Sum_probs=217.7
Q ss_pred chhhHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHhhhheeeecccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q psy13459 162 PQLTNIRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIFT 241 (542)
Q Consensus 162 ~~~~~~r~~l~~~le~P~ss~~a~~f~~~~~~lI~ls~i~~~~et~~~~~~~~~~~~~~~~~~~~~~l~~~e~v~~~iF~ 241 (542)
.+..++|.++++++|.|..- .+..+..++.++++.+.++.++.|+++. ......+++++|++.+++|.
T Consensus 72 ~r~Rr~q~~vYN~LERPrGW-kaf~YH~~VFllVl~CLILsV~STi~e~-----------~~~a~~~L~~LEiv~IV~Fg 139 (654)
T KOG1419|consen 72 ARYRRIQNKVYNFLERPRGW-KAFLYHFFVFLLVLSCLILSVLSTIEEY-----------EKLASGILYILEIVMIVFFG 139 (654)
T ss_pred HHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHHHhcccHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999873 4677788888888889999999998864 23456789999999999999
Q ss_pred HHHHHHHhhCcc---------chhhhccccchhhhhhhcccceeecccc--CCchhhhHHHHHHHHHHHHHHhhhhccch
Q psy13459 242 AEYLLRLFAAPD---------RCKFVRSVMSIIDVVAILPYYIGLGITD--NDDVSGAFVTLRVFRVFRIFKFSRHSQGL 310 (542)
Q Consensus 242 ~E~~lr~~~a~~---------~~~y~~s~~ni~Dli~iip~~i~~~~~~--~~~~~~~l~~lR~lRllRilkl~r~~~~l 310 (542)
+||++|+|+|++ +.+|.++++.+||+++++.++..+.+.. +.-....++.||++.++|++|+-|.-..+
T Consensus 140 ~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTW 219 (654)
T KOG1419|consen 140 LEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTW 219 (654)
T ss_pred HHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchh
Confidence 999999999975 4568899999999999998887776653 22334668889999999999999888888
Q ss_pred hhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhhhccCC----CCCCCCccchhhhHHHhhhhccccCCCCcccchhhHH
Q psy13459 311 RILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNV----DGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIV 386 (542)
Q Consensus 311 ~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~----~~~~f~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~ 386 (542)
+.|+..+....++|....-+-++.+++.|.+.|..|++. .+..|.+|.||+||.++|+|||||||.+|+||.||++
T Consensus 220 KLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~l 299 (654)
T KOG1419|consen 220 KLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLL 299 (654)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHH
Confidence 888888888888888777666777777777899999873 3578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13459 387 GGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRDRE 429 (542)
Q Consensus 387 ~~~~~i~g~~~~al~i~~i~~~f~~~~~~~~~~~~~~~~~~~~ 429 (542)
+..+.++|+.+|+++.|++++.|+-..++++++++-++++...
T Consensus 300 aa~fsligiSFFALPAGILGSGfALKVQeq~RQKHf~rrr~pA 342 (654)
T KOG1419|consen 300 AACFSLIGISFFALPAGILGSGFALKVQEQHRQKHFNRRRNPA 342 (654)
T ss_pred HHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHHhhcchH
Confidence 9999999999999999999999999999988888776665543
No 6
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.92 E-value=1.1e-24 Score=249.95 Aligned_cols=252 Identities=14% Similarity=0.115 Sum_probs=171.2
Q ss_pred HHHhhhcCCCCchhHHHHHHHHHHHHHHhhhheeeecccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q psy13459 170 KMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIFTAEYLLRLF 249 (542)
Q Consensus 170 ~l~~~le~P~ss~~a~~f~~~~~~lI~ls~i~~~~et~~~~~~~~~~~~~~~~~~~~~~l~~~e~v~~~iF~~E~~lr~~ 249 (542)
+.+..+.+|.++. .++|+.+++++++.+.++..++.... .......+.++|.++.++|.+|++++|+
T Consensus 48 ~~~~~ii~P~~~~-~~~Wd~~~~~~~~y~~~~~p~~~~F~------------~~~~~~~~~~~d~i~~~~F~iDi~l~f~ 114 (823)
T PLN03192 48 GSDGWIISPMDSR-YRWWETLMVVLVAYSAWVYPFEVAFL------------NASPKRGLEIADNVVDLFFAVDIVLTFF 114 (823)
T ss_pred ccCCeEECCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHee------------CCCCCCCeeeHHHHHHHHHHHHHHhhee
Confidence 3455688998774 46889999999988888876654331 0111124668899999999999999999
Q ss_pred hCc----------c----chhhhccccchhhhhhhcccceeecc-ccCCchhhhHHHHHHHHHHHHHHhhhhccchhhhh
Q psy13459 250 AAP----------D----RCKFVRSVMSIIDVVAILPYYIGLGI-TDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILG 314 (542)
Q Consensus 250 ~a~----------~----~~~y~~s~~ni~Dli~iip~~i~~~~-~~~~~~~~~l~~lR~lRllRilkl~r~~~~l~~l~ 314 (542)
++. + .++|++++| ++|+++++|+.+.... .........+.++|++|++|+.|+.+.+..+....
T Consensus 115 ~ay~d~~~~~lV~d~~~I~~~Yl~~~f-~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~ 193 (823)
T PLN03192 115 VAYIDPRTQLLVRDRKKIAVRYLSTWF-LMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDI 193 (823)
T ss_pred EEEEeCCCcEEEeCHHHHHHHHHHHhH-HHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 873 1 457888765 9999999999654222 22112222334445555555544444443333211
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHhhhhccCC---CCC-------------CCCccchhhhHHHhhhhccccCCCCc
Q psy13459 315 YTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNV---DGT-------------NFTSIPAAFWYTIVTMTTLGYGDMVP 378 (542)
Q Consensus 315 ~~l~~s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~---~~~-------------~f~s~~~a~y~a~vTltTVGYGDi~p 378 (542)
. +......+..++++++++++++||++|++.... +.+ .+..|..|+||+++|||||||||++|
T Consensus 194 ~-~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p 272 (823)
T PLN03192 194 R-FSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHA 272 (823)
T ss_pred H-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence 1 111123455666677778899999999875321 111 12236679999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccC
Q psy13459 379 ETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRDREFVELEVP 436 (542)
Q Consensus 379 ~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (542)
.|..|++|+++++++|++++++.++.+++.+.+...+..+.+++.....+.+...+++
T Consensus 273 ~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp 330 (823)
T PLN03192 273 VNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLP 330 (823)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999988877766655555455445555444443
No 7
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=99.91 E-value=2.6e-25 Score=186.88 Aligned_cols=90 Identities=50% Similarity=0.811 Sum_probs=77.9
Q ss_pred EEEEeCCeEEEeeHHHHhcCCCCccccCCC---CCccCCCCceEEEecCCcchHHhhccccc-CcccCCCCCCHHHHHHH
Q psy13459 43 LLINVSGRRFETWRNTLEKYPDSLLGSNER---EFFYDEDSKEYFFDRDPDIFRHILNYYRT-GKLHYPKHECLTSYDEE 118 (542)
Q Consensus 43 v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~---~~~~~~~~~~~f~DRd~~~F~~Il~~~r~-g~l~~p~~~~~~~~~~E 118 (542)
|+|||||++|+|+++||.++|+|+|+.+.+ ...+++++|+|||||||++|++||||||+ |+++.|.+.+...|.+|
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~E 80 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIPDEICLEELLEE 80 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCCCCchhHHHHHHH
Confidence 789999999999999999999999999744 35788899999999999999999999999 89999999999999999
Q ss_pred HhhcCCCCcccccc
Q psy13459 119 LAFFGILPDVIGDC 132 (542)
Q Consensus 119 ~~f~~l~~~~~~~c 132 (542)
|+||+|+++.++.|
T Consensus 81 a~fy~l~~l~i~~c 94 (94)
T PF02214_consen 81 AEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHT-HHHHBHHC
T ss_pred HHHcCCCccccCCC
Confidence 99999999877766
No 8
>KOG0498|consensus
Probab=99.85 E-value=4.8e-20 Score=201.65 Aligned_cols=254 Identities=13% Similarity=0.162 Sum_probs=169.6
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHhhhheeeec-ccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhCcc
Q psy13459 175 FENPHTSTAALVFYYVTGFFIAVSVMANVVET-VPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPD 253 (542)
Q Consensus 175 le~P~ss~~a~~f~~~~~~lI~ls~i~~~~et-~~~~~~~~~~~~~~~~~~~~~~l~~~e~v~~~iF~~E~~lr~~~a~~ 253 (542)
.-+|+|.. -..|+++++++.+.+.++..++- ++..... ...........+.+++.+.+++|+++++++|.++.-
T Consensus 69 Ii~P~s~~-~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~----~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv 143 (727)
T KOG0498|consen 69 ILDPYSPF-YRVWNKFFLLLVIYAAFVDPLFFYFLLIDDE----RKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYV 143 (727)
T ss_pred eECCCChH-HHHHHHHHHHHHHHHHHhccceeeEEecccc----cccccccccCceeeHHHHHHHHHHHHHHHhheEEEE
Confidence 67898874 45556666666666665554443 2221100 000122345678899999999999999999998731
Q ss_pred --------------chhhhccccchhhhhhhcccceeecccc------CC---chhhhHHHHHHHHHHHHHHhhhhccch
Q psy13459 254 --------------RCKFVRSVMSIIDVVAILPYYIGLGITD------ND---DVSGAFVTLRVFRVFRIFKFSRHSQGL 310 (542)
Q Consensus 254 --------------~~~y~~s~~ni~Dli~iip~~i~~~~~~------~~---~~~~~l~~lR~lRllRilkl~r~~~~l 310 (542)
.++|++++| ++|+++++|+-..+++.. .. ....++.++|+.|+.|++++.+.+...
T Consensus 144 ~~~s~elV~dpk~IA~rYl~twF-iiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~ 222 (727)
T KOG0498|consen 144 DPSSYELVDDPKKIAKRYLKTWF-LIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKD 222 (727)
T ss_pred CCCCceeeeCHHHHHHHHHhhhH-HHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999766 999999999955443321 11 123444455555555555555443322
Q ss_pred hhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhhhccCCC------------------CCC----CC------ccchhhh
Q psy13459 311 RILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVD------------------GTN----FT------SIPAAFW 362 (542)
Q Consensus 311 ~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~~------------------~~~----f~------s~~~a~y 362 (542)
.... .....--.+.++++.+++.|+.||++|++....+ ..+ |. .|..|+|
T Consensus 223 ~~~v--~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLy 300 (727)
T KOG0498|consen 223 TGFV--YETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALY 300 (727)
T ss_pred hhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHHHH
Confidence 2111 1111122557777778888999999998743211 111 32 3566899
Q ss_pred HHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccC
Q psy13459 363 YTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRDREFVELEVP 436 (542)
Q Consensus 363 ~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (542)
|+++||||+|||+.+|.++.+++|++++|++|.+++|+++|.+.+.++..+...++...+.+...+.+..+.+|
T Consensus 301 w~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP 374 (727)
T KOG0498|consen 301 WGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLP 374 (727)
T ss_pred HHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999988877766655555444444444444
No 9
>KOG2302|consensus
Probab=99.81 E-value=3e-19 Score=192.05 Aligned_cols=246 Identities=20% Similarity=0.291 Sum_probs=182.8
Q ss_pred chhhHHHHHHHhh-hcCCCCch--------hHHHHHHHHHHHHHHhhhheeeecccCCCCCCCCCCCCCCcchhhHHHHH
Q psy13459 162 PQLTNIRQKMWRA-FENPHTST--------AALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCL 232 (542)
Q Consensus 162 ~~~~~~r~~l~~~-le~P~ss~--------~a~~f~~~~~~lI~ls~i~~~~et~~~~~~~~~~~~~~~~~~~~~~l~~~ 232 (542)
+.|.+. +..|.. +..|++.+ ..+.|+.++.++|++|++++++|+..... + ..+++ ++..-
T Consensus 1093 p~~c~~-r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~--~------s~Eri--Fltls 1161 (1956)
T KOG2302|consen 1093 PHWCNL-RELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVE--G------STERI--FLTLS 1161 (1956)
T ss_pred CcchhH-HHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhccccccc--C------cceEE--EEEec
Confidence 344444 445544 45676632 46789999999999999999999965421 1 02222 33345
Q ss_pred HHHHHHHHHHHHHHHHhhCc---cchhhhccccchhhhhhhcccceeeccc----cCCchhhhHHHHHHHHHHHHHHhhh
Q psy13459 233 DTACVMIFTAEYLLRLFAAP---DRCKFVRSVMSIIDVVAILPYYIGLGIT----DNDDVSGAFVTLRVFRVFRIFKFSR 305 (542)
Q Consensus 233 e~v~~~iF~~E~~lr~~~a~---~~~~y~~s~~ni~Dli~iip~~i~~~~~----~~~~~~~~l~~lR~lRllRilkl~r 305 (542)
+++|+++|.+|+.+|+++.+ .-..|+++.||.+|.+.+.-..+.+++. .+....+++++||++|.+|.+|++.
T Consensus 1162 nyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRtlRpLRviS 1241 (1956)
T KOG2302|consen 1162 NYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRTLRPLRVIS 1241 (1956)
T ss_pred chHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHh
Confidence 69999999999999999776 3468999999999998777776665543 2234556788888888999999999
Q ss_pred hccchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhhhccCC---------------------------CCCCCCccc
Q psy13459 306 HSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNV---------------------------DGTNFTSIP 358 (542)
Q Consensus 306 ~~~~l~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~---------------------------~~~~f~s~~ 358 (542)
..++++.+..||.+|++.++.++++.+.+.++|++++..++++. ...||++..
T Consensus 1242 ra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlg 1321 (1956)
T KOG2302|consen 1242 RAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLG 1321 (1956)
T ss_pred hcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchHH
Confidence 99999999999999999999999999999999999876655521 135788888
Q ss_pred hhhhHHHhhhhccccCC------------CCccc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 359 AAFWYTIVTMTTLGYGD------------MVPET----IAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQR 418 (542)
Q Consensus 359 ~a~y~a~vTltTVGYGD------------i~p~t----~~~~i~~~~~~i~g~~~~al~i~~i~~~f~~~~~~~~~ 418 (542)
+|+.-.++-.|--||-+ +.|.. |+=-+|+++..|+..++++++++++++||-+..+.+++
T Consensus 1322 qalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~ 1397 (1956)
T KOG2302|consen 1322 QALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEA 1397 (1956)
T ss_pred HHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88875555555555433 34443 33345788888999999999999999999876654443
No 10
>KOG2301|consensus
Probab=99.81 E-value=3.3e-19 Score=208.72 Aligned_cols=228 Identities=22% Similarity=0.273 Sum_probs=185.4
Q ss_pred CchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHhhhheeeecccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHH
Q psy13459 161 LPQLTNIRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIF 240 (542)
Q Consensus 161 ~~~~~~~r~~l~~~le~P~ss~~a~~f~~~~~~lI~ls~i~~~~et~~~~~~~~~~~~~~~~~~~~~~l~~~e~v~~~iF 240 (542)
.+.+.++|+.+..++.+| .+++++.+++++|++.++++|+++ .++....+.+.+.+++++|
T Consensus 426 ~~~~~~~~~~~~~~v~~~-------~~~~~i~i~i~lnt~~~a~eh~~~------------~~~~~~~l~~~~~vF~~lF 486 (1592)
T KOG2301|consen 426 CPIWLKFKQWLRKMVFDP-------FVILFITICIALNTLFMAMEHYEM------------TKARNYLLYLGNVVFTGLF 486 (1592)
T ss_pred chHHHHHHHHHHHhhhcc-------eehhhhHHHHhhcccEEEEEEeCC------------cHHHHHHHHHHHHHHHHHH
Confidence 355677888888888774 568999999999999999999986 5677889999999999999
Q ss_pred HHHHHHHHhhCccchhhhccccchhhhhhhcccceeeccccCCchhhhHHHHHHHHHHHHHHhhhhccchhhhhhhhhcc
Q psy13459 241 TAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSC 320 (542)
Q Consensus 241 ~~E~~lr~~~a~~~~~y~~s~~ni~Dli~iip~~i~~~~~~~~~~~~~l~~lR~lRllRilkl~r~~~~l~~l~~~l~~s 320 (542)
++|+.+++++-+ ...|+++.||++|++.++-..+.+. ......+++||.+|++|++|+.++|..++.+...+.++
T Consensus 487 ~~Em~~ki~al~-~~~yF~~~~n~fD~~iv~l~~~~~~----~~~~~g~svLr~frllRIfkl~k~wp~l~~lv~~i~ns 561 (1592)
T KOG2301|consen 487 TVEMILKIYALG-PRNYFRRGWNIFDLIIVLLSLLELL----LKNVYGLSVLRSFRLLRIFKLIKSWPTLNDLVKSIFNS 561 (1592)
T ss_pred HHHHHHHHHHcC-cHHHHhhhcchheEEEEehhhHHhc----ccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccc
Confidence 999999999554 6799999999999998882222222 22345678999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhccCCC-CC-----CCCccchhhhHHHhhhhccccCCCC------cccchhhHHHH
Q psy13459 321 ASELGFLVFSLAMAIIIFATVMFYAEKNVD-GT-----NFTSIPAAFWYTIVTMTTLGYGDMV------PETIAGKIVGG 388 (542)
Q Consensus 321 ~~~l~~ll~~l~~~i~ifa~l~~~~e~~~~-~~-----~f~s~~~a~y~a~vTltTVGYGDi~------p~t~~~~i~~~ 388 (542)
.+.++.|++++++++++||.+++.+.++.. .. +|++|+.||-+.++ +|+-+|-|+. -.++.-.++.+
T Consensus 562 ~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~~~~~~~~~~fp~sfl~vFq-lt~e~W~evm~~~~~~~~~~~~~i~Fi 640 (1592)
T KOG2301|consen 562 GKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLHCDIHWHFTDFPHSFLSVFQ-ITCEEWTDVMWDCMEAAGQPLCAIYFI 640 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCCCCCccchhhCHHHHHHHHH-HcCCchHHHHHHHHHHhccchhhhHHH
Confidence 999999999999999999998887665432 22 78999999999999 7776665532 12233344544
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy13459 389 VCSLSG-VLVIALPVPVIVSNFSRIY 413 (542)
Q Consensus 389 ~~~i~g-~~~~al~i~~i~~~f~~~~ 413 (542)
+++++| ++++++++++++++++...
T Consensus 641 ~~~l~gn~vvLnlFlAl~~~n~~~~e 666 (1592)
T KOG2301|consen 641 AYFLFGNLVVLNLFLALILDNFESDE 666 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 555555 8888999999999998655
No 11
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.80 E-value=3.3e-19 Score=168.97 Aligned_cols=175 Identities=23% Similarity=0.391 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcc-chhhhccccchhhhhhhcccceeeccccCCch--hhhHHHHHHHHHHHHHHhhhhc
Q psy13459 231 CLDTACVMIFTAEYLLRLFAAPD-RCKFVRSVMSIIDVVAILPYYIGLGITDNDDV--SGAFVTLRVFRVFRIFKFSRHS 307 (542)
Q Consensus 231 ~~e~v~~~iF~~E~~lr~~~a~~-~~~y~~s~~ni~Dli~iip~~i~~~~~~~~~~--~~~l~~lR~lRllRilkl~r~~ 307 (542)
++|.+++++|++|+++|+++.+- +.+|++++||++|+++++|+++.......... ...++++|++|++|++|+.+..
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~ 80 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRF 80 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccccceEEEEEeecccccccccccc
Confidence 47999999999999999998875 37999999999999999999877665432221 2456788888888888888889
Q ss_pred cchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhhhccCCC----------------CCCCCccchhhhHHHhhhhcc
Q psy13459 308 QGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVD----------------GTNFTSIPAAFWYTIVTMTTL 371 (542)
Q Consensus 308 ~~l~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~~----------------~~~f~s~~~a~y~a~vTltTV 371 (542)
+.++.+..++..+.+.+..++++++++++.+|++++.+.+... ..+|++|+.|+||++.++||+
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~ 160 (200)
T PF00520_consen 81 RSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGE 160 (200)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTT
T ss_pred ccccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccC
Confidence 9999888888889999999999999999999998876654421 256789999999999999999
Q ss_pred ccCCCCcc-----cchhhHHH-HHHHHHHHHHHHHHHHHH
Q psy13459 372 GYGDMVPE-----TIAGKIVG-GVCSLSGVLVIALPVPVI 405 (542)
Q Consensus 372 GYGDi~p~-----t~~~~i~~-~~~~i~g~~~~al~i~~i 405 (542)
||||..|. ++.+.++. ++.++++++++|+++|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 161 GWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp TCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99999997 78888887 677777789999999875
No 12
>KOG0501|consensus
Probab=99.78 E-value=2.6e-18 Score=177.26 Aligned_cols=237 Identities=18% Similarity=0.293 Sum_probs=177.3
Q ss_pred hHHHHHHHHHHHHHHhhhheeeecccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhCc----------
Q psy13459 183 AALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAP---------- 252 (542)
Q Consensus 183 ~a~~f~~~~~~lI~ls~i~~~~et~~~~~~~~~~~~~~~~~~~~~~l~~~e~v~~~iF~~E~~lr~~~a~---------- 252 (542)
+..+|+|++.++.+...+.....--.. . ...-...+.++|.+..++|.+|+++.|.+..
T Consensus 216 FKt~WDWvIL~LTFYTAimVPyNvaFK------n-----k~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsd 284 (971)
T KOG0501|consen 216 FKTIWDWVILILTFYTAIMVPYNVAFK------N-----KQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSD 284 (971)
T ss_pred hhhHHHHHHHHHHHHHHheeeeeeeec------c-----cccCceeEEEecchhhhhhhhhhhhhcceeeecCCCceecC
Confidence 567889988888777666654432211 0 1112234567899999999999999998752
Q ss_pred ---cchhhhccccchhhhhhhcccceeecccc-CCchhhhHHHHHHHHHHHHHHhhhhccchhhhhhhhhccchhhHHHH
Q psy13459 253 ---DRCKFVRSVMSIIDVVAILPYYIGLGITD-NDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLV 328 (542)
Q Consensus 253 ---~~~~y~~s~~ni~Dli~iip~~i~~~~~~-~~~~~~~l~~lR~lRllRilkl~r~~~~l~~l~~~l~~s~~~l~~ll 328 (542)
-+..|+|+|| +||+++-+|+.+.-.+.. ....+++++.|+++|++|+=|+.|.....-..+ ...+.+++
T Consensus 285 PkvIRmNYlKsWF-vIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD~YlEYG------AA~LvLLl 357 (971)
T KOG0501|consen 285 PKVIRMNYLKSWF-VIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLDHYLEYG------AAVLVLLL 357 (971)
T ss_pred hhHHhHHHHHHHH-HHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHH
Confidence 1568999987 999999999977554433 334566778888888888777776554432222 23345555
Q ss_pred HHHHHHHHHHHHHhhhhccCC-----------------------C---------------CCCCCccchhhhHHHhhhhc
Q psy13459 329 FSLAMAIIIFATVMFYAEKNV-----------------------D---------------GTNFTSIPAAFWYTIVTMTT 370 (542)
Q Consensus 329 ~~l~~~i~ifa~l~~~~e~~~-----------------------~---------------~~~f~s~~~a~y~a~vTltT 370 (542)
.+..+..++.||+||.+.+.+ . ++.-.-|..|+||++..|||
T Consensus 358 C~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mtt 437 (971)
T KOG0501|consen 358 CVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTT 437 (971)
T ss_pred HHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhc
Confidence 556667789999999875521 0 11113467799999999999
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccCC
Q psy13459 371 LGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRDREFVELEVPY 437 (542)
Q Consensus 371 VGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (542)
||+|.+.|.|..+++|++.+|++|..+.|.+.|.+...+++++....+..+.....+..++-.++|+
T Consensus 438 vGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK 504 (971)
T KOG0501|consen 438 VGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPK 504 (971)
T ss_pred ccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccH
Confidence 9999999999999999999999999999999999999999999998888887778888777777765
No 13
>KOG2714|consensus
Probab=99.77 E-value=2.9e-19 Score=179.78 Aligned_cols=102 Identities=33% Similarity=0.467 Sum_probs=85.7
Q ss_pred CCCCCceEEEEeCCeEEEeeHHHHhcCC-CCccccCC--CCCccCCCCceEEEecCCcchHHhhcccccCcccCCCCCCH
Q psy13459 36 RKADDEKLLINVSGRRFETWRNTLEKYP-DSLLGSNE--REFFYDEDSKEYFFDRDPDIFRHILNYYRTGKLHYPKHECL 112 (542)
Q Consensus 36 ~~~~~~~v~lNVgG~~f~t~~~tl~~~p-~t~l~~~~--~~~~~~~~~~~~f~DRd~~~F~~Il~~~r~g~l~~p~~~~~ 112 (542)
...++++|+|||||++|+|+++||+..| ||+|+.+. +-....++.|.+||||||++|..||||||||.|..|.....
T Consensus 6 ~~~~~~~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~ 85 (465)
T KOG2714|consen 6 MGSSGDRVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPE 85 (465)
T ss_pred cCCCCceEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchh
Confidence 3456789999999999999999999998 99999874 44456788999999999999999999999999998666666
Q ss_pred HHHHHHHhhcCCCCccc-cccccchh
Q psy13459 113 TSYDEELAFFGILPDVI-GDCCYEDY 137 (542)
Q Consensus 113 ~~~~~E~~f~~l~~~~~-~~cC~e~~ 137 (542)
..+.+||.||||.++.. -.-|++.+
T Consensus 86 ~llhdEA~fYGl~~llrrl~~~~~~F 111 (465)
T KOG2714|consen 86 RLLHDEAMFYGLTPLLRRLTLCEELF 111 (465)
T ss_pred hhhhhhhhhcCcHHHHHHhhcCcccc
Confidence 66777999999988765 23465554
No 14
>KOG2301|consensus
Probab=99.75 E-value=5.1e-18 Score=198.80 Aligned_cols=234 Identities=21% Similarity=0.324 Sum_probs=193.5
Q ss_pred hhHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHhhhheeeecccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q psy13459 164 LTNIRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIFTAE 243 (542)
Q Consensus 164 ~~~~r~~l~~~le~P~ss~~a~~f~~~~~~lI~ls~i~~~~et~~~~~~~~~~~~~~~~~~~~~~l~~~e~v~~~iF~~E 243 (542)
.+++|.++|.++.+ +.|+++++++|++|++.++++++++ +.++..++.+++.+++++|++|
T Consensus 1143 ~~~~q~~~~~~v~~-------~~F~~~i~~li~ln~i~l~~~~~~q------------s~~~~~~l~~in~vft~~Ft~E 1203 (1592)
T KOG2301|consen 1143 RNKLQGLVFDLVTS-------QAFDYLIMLLIFLNTIIMMVETYDQ------------SDTYTAILTILNAVFIVLFTIE 1203 (1592)
T ss_pred cchhhhHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHhhccc------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999977 4599999999999999999999986 6788889999999999999999
Q ss_pred HHHHHhhCccchhhhccccchhhhhhhcccceeeccccCC----chhhhHHHHHHHHHHHHHHhhhhccchhhhhhhhhc
Q psy13459 244 YLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDND----DVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKS 319 (542)
Q Consensus 244 ~~lr~~~a~~~~~y~~s~~ni~Dli~iip~~i~~~~~~~~----~~~~~l~~lR~lRllRilkl~r~~~~l~~l~~~l~~ 319 (542)
+++|+++-+ ...||++.||++|+++++-+++..++.... ......+++|++|+.|++|+.+...+++.|..++..
T Consensus 1204 ~vLKiiA~~-~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir~LL~t~~~ 1282 (1592)
T KOG2301|consen 1204 CILKVIALR-FRGYFTSAWNVFDFVVTILSIVGIVLSEAVEKYESSPTLLRFLRLFRVGRFLRLIPQAKTIRTLLLTLMM 1282 (1592)
T ss_pred HHHHHHHhh-hhHhccccchheEeeeeeHhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 999999654 569999999999999999888766544221 123457789999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhhhccC------CCCCCCCccchhhhHHHhhhhccccCCC-----------Cc--cc
Q psy13459 320 CASELGFLVFSLAMAIIIFATVMFYAEKN------VDGTNFTSIPAAFWYTIVTMTTLGYGDM-----------VP--ET 380 (542)
Q Consensus 320 s~~~l~~ll~~l~~~i~ifa~l~~~~e~~------~~~~~f~s~~~a~y~a~vTltTVGYGDi-----------~p--~t 380 (542)
|.+.+..+++++++++++||.++....+. .+..||.++++|+--.+...|+-||.|+ .| .+
T Consensus 1283 Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~~i~~~~NF~tf~~a~i~LFr~~Tge~W~~im~~~l~s~p~Cdp~~~~ 1362 (1592)
T KOG2301|consen 1283 SLPALFFIILLLFLLFFIYAIIGMQLFGYVKLGGINDHNNFRTFPNSMVVLFRCATGEGWNDIMDDCLNSKPFCDPDDGN 1362 (1592)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhheeccccCCCcccccchhheeeeeehhhhhhHHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999999999999987765442 3568999999998665655565555332 11 11
Q ss_pred ---chh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 381 ---IAG------KIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQ 417 (542)
Q Consensus 381 ---~~~------~i~~~~~~i~g~~~~al~i~~i~~~f~~~~~~~~ 417 (542)
..| -+|+++.+|+.++++|++|++|.+||+..+++..
T Consensus 1363 ~~~dCGn~~~Ai~YF~Sf~iIs~~IvvNLfVAVImeNFs~~t~~~s 1408 (1592)
T KOG2301|consen 1363 NGTDCGNPTVAIIYFVSWILISSYIVVNLFVAVILENFSYATEDSS 1408 (1592)
T ss_pred cccccCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 122 3578899999999999999999999998876655
No 15
>KOG2715|consensus
Probab=99.74 E-value=7.1e-19 Score=155.11 Aligned_cols=90 Identities=31% Similarity=0.348 Sum_probs=79.4
Q ss_pred CCCceEEEEeCCeEEEeeHHHHhcCCCCccccCC-C---CCccCCCCceEEEecCCcchHHhhcccccCcccCCCCCCHH
Q psy13459 38 ADDEKLLINVSGRRFETWRNTLEKYPDSLLGSNE-R---EFFYDEDSKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLT 113 (542)
Q Consensus 38 ~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~-~---~~~~~~~~~~~f~DRd~~~F~~Il~~~r~g~l~~p~~~~~~ 113 (542)
..+.+|+|||||+.|.|+++||.+.|.++|.++. + -+.-.|++|.|+|||||.+|..||||+|.|||.+-. +..+
T Consensus 18 g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~-l~ee 96 (210)
T KOG2715|consen 18 GVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNK-LSEE 96 (210)
T ss_pred CceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhh-hhhh
Confidence 4468999999999999999999999999999862 2 234568899999999999999999999999998766 7788
Q ss_pred HHHHHHhhcCCCCcc
Q psy13459 114 SYDEELAFFGILPDV 128 (542)
Q Consensus 114 ~~~~E~~f~~l~~~~ 128 (542)
..++||+||.++.++
T Consensus 97 GvL~EAefyn~~~li 111 (210)
T KOG2715|consen 97 GVLEEAEFYNDPSLI 111 (210)
T ss_pred ccchhhhccCChHHH
Confidence 899999999998764
No 16
>KOG2716|consensus
Probab=99.73 E-value=1.3e-18 Score=165.55 Aligned_cols=96 Identities=29% Similarity=0.405 Sum_probs=80.9
Q ss_pred CCceEEEEeCCeEEEeeHHHHhcCCCCccccCCCC--CccCCCCceEEEecCCcchHHhhcccccCcccCCCCCC-HHHH
Q psy13459 39 DDEKLLINVSGRRFETWRNTLEKYPDSLLGSNERE--FFYDEDSKEYFFDRDPDIFRHILNYYRTGKLHYPKHEC-LTSY 115 (542)
Q Consensus 39 ~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~--~~~~~~~~~~f~DRd~~~F~~Il~~~r~g~l~~p~~~~-~~~~ 115 (542)
.++.|+|||||+.|.|+++||++ -|++|..+.+. ..-.+++|.+||||+|+||..||||+|+|.+.+|++.- +.++
T Consensus 3 ~~~~vkLnvGG~~F~Tsk~TLtk-~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El 81 (230)
T KOG2716|consen 3 MSETVKLNVGGTIFKTSKSTLTK-FDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKEL 81 (230)
T ss_pred ccceEEEecCCeEEEeehhhhhh-hhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHH
Confidence 34689999999999999999999 46777766332 24567899999999999999999999999999999977 7899
Q ss_pred HHHHhhcCCCCccccccccchh
Q psy13459 116 DEELAFFGILPDVIGDCCYEDY 137 (542)
Q Consensus 116 ~~E~~f~~l~~~~~~~cC~e~~ 137 (542)
++||+||.|++++. .|....
T Consensus 82 ~~EA~fYlL~~Lv~--~C~~~i 101 (230)
T KOG2716|consen 82 LREAEFYLLDGLVE--LCQSAI 101 (230)
T ss_pred HHHHHHhhHHHHHH--HHHHHh
Confidence 99999999998863 454443
No 17
>KOG2302|consensus
Probab=99.67 E-value=2.8e-16 Score=169.44 Aligned_cols=222 Identities=15% Similarity=0.215 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHhhhheeeecccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccch
Q psy13459 185 LVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSI 264 (542)
Q Consensus 185 ~~f~~~~~~lI~ls~i~~~~et~~~~~~~~~~~~~~~~~~~~~~l~~~e~v~~~iF~~E~~lr~~~a~~~~~y~~s~~ni 264 (542)
...+.++.++|.+|++++..|++.+ +......+.+.++.++++|+.|.++++++++. ++|+++-||-
T Consensus 1441 hyld~fit~ii~LnvVtms~ehyqq------------p~sldealkycny~ft~vfV~EaV~klvafG~-rrFfkdrwnq 1507 (1956)
T KOG2302|consen 1441 HYLDQFITFIICLNVVTMSEEHYQQ------------PTSLDEALKYCNYRFTAVFVLEAVLKLVAFGE-RRFFKDRWNQ 1507 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC------------cccHHHHhhhcceeeeehhHHHHHHHHHHHhH-HHHHhhhhhh
Confidence 6778899999999999999999876 56678899999999999999999999998875 4999999999
Q ss_pred hhhhhhcccceeeccccC------CchhhhHHHHHHHHHHHHHHhhhhccchhhhhhhhhccchhhHHHHHHHHHHHHHH
Q psy13459 265 IDVVAILPYYIGLGITDN------DDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIF 338 (542)
Q Consensus 265 ~Dli~iip~~i~~~~~~~------~~~~~~l~~lR~lRllRilkl~r~~~~l~~l~~~l~~s~~~l~~ll~~l~~~i~if 338 (542)
+|+..++-+++.+-+.+. .-...+++++|++|+.|++|+.++..++|.+..++...+.+++++.++++++.+||
T Consensus 1508 ldlaivlls~mgitleeie~naalpinptiirimrvlriarvlkllkmatgmralldtvvqalpqvgnlgllfmllffiy 1587 (1956)
T KOG2302|consen 1508 LDLAIVLLSVMGITLEEIEINAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIY 1587 (1956)
T ss_pred hhHHHHHHHHhcccHhheeecccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHH
Confidence 999888777665543221 11235789999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccC------------CCCCCCCccchhhhHHHhhhhccccCCCCccc-------------chhh-HHHHHHHH
Q psy13459 339 ATVMFYAEKN------------VDGTNFTSIPAAFWYTIVTMTTLGYGDMVPET-------------IAGK-IVGGVCSL 392 (542)
Q Consensus 339 a~l~~~~e~~------------~~~~~f~s~~~a~y~a~vTltTVGYGDi~p~t-------------~~~~-i~~~~~~i 392 (542)
|.++.-+++. .....|.+|.-||...+..-|+-.|..|...| ..+- +|++++..
T Consensus 1588 aalgvelfg~lec~e~npceglsrhatf~nfgmafltlfrvstgdnwngimkdtlrdc~~e~~cls~~~sp~yfvsfvlt 1667 (1956)
T KOG2302|consen 1588 AALGVELFGKLECNEENPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMKDTLRDCTHEESCLSQFVSPLYFVSFVLT 1667 (1956)
T ss_pred HHHHHHHhcccccCCCCCccccccccchhhhchHhhhheeeccCCcccchhhhhHhhcccchhhhhhhccchhhhhhhhh
Confidence 9987644332 22356788877766555444444443332221 1222 34555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 393 SGVLVIALPVPVIVSNFSRIYHQNQRA 419 (542)
Q Consensus 393 ~g~~~~al~i~~i~~~f~~~~~~~~~~ 419 (542)
.-+++++++++++...+.+..++.++.
T Consensus 1668 aqfvlvnvvvavlmkhleesnkea~ed 1694 (1956)
T KOG2302|consen 1668 AQFVLVNVVVAVLMKHLEESNKEAQED 1694 (1956)
T ss_pred hhhHHHHHHHHHHHHHHHhhchhhhhh
Confidence 557777999988888777655544443
No 18
>KOG1665|consensus
Probab=99.66 E-value=4.7e-17 Score=150.40 Aligned_cols=91 Identities=29% Similarity=0.377 Sum_probs=79.9
Q ss_pred CCCceEEEEeCCeEEEeeHHHHhc-CCCCccccCCCC---CccCCCCceEEEecCCcchHHhhcccccCcccCCCCCCHH
Q psy13459 38 ADDEKLLINVSGRRFETWRNTLEK-YPDSLLGSNERE---FFYDEDSKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLT 113 (542)
Q Consensus 38 ~~~~~v~lNVgG~~f~t~~~tl~~-~p~t~l~~~~~~---~~~~~~~~~~f~DRd~~~F~~Il~~~r~g~l~~p~~~~~~ 113 (542)
..+..|+|||||++|.|+.+||.. -|||+|..|.+. .-..+++|.|||||+|.+|++||||+|+|.+..-.++...
T Consensus 6 ~~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~l 85 (302)
T KOG1665|consen 6 NLSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCL 85 (302)
T ss_pred ChhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHH
Confidence 445699999999999999999985 799999987433 2356889999999999999999999999999888888889
Q ss_pred HHHHHHhhcCCCCcc
Q psy13459 114 SYDEELAFFGILPDV 128 (542)
Q Consensus 114 ~~~~E~~f~~l~~~~ 128 (542)
.+++||+||+|-.+.
T Consensus 86 gvLeeArff~i~sL~ 100 (302)
T KOG1665|consen 86 GVLEEARFFQILSLK 100 (302)
T ss_pred HHHHHhhHHhhHhHH
Confidence 999999999996654
No 19
>KOG2723|consensus
Probab=99.65 E-value=6.8e-17 Score=152.80 Aligned_cols=90 Identities=31% Similarity=0.469 Sum_probs=81.5
Q ss_pred CCceEEEEeCCeEEEeeHHHHhcCCCCccccCCC--CCccCCCCceEEEecCCcchHHhhcccccCcccCCCCCC-HHHH
Q psy13459 39 DDEKLLINVSGRRFETWRNTLEKYPDSLLGSNER--EFFYDEDSKEYFFDRDPDIFRHILNYYRTGKLHYPKHEC-LTSY 115 (542)
Q Consensus 39 ~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~--~~~~~~~~~~~f~DRd~~~F~~Il~~~r~g~l~~p~~~~-~~~~ 115 (542)
..+.|.|||||..|.|+..||.++|+|+|+++.. ...-++.+|.||||||+.+|||||||+||.++.+|++.. .+.+
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L 86 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAEVERL 86 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcccccccchhhhhHHHH
Confidence 4569999999999999999999999999999854 445678899999999999999999999998899999988 8899
Q ss_pred HHHHhhcCCCCcc
Q psy13459 116 DEELAFFGILPDV 128 (542)
Q Consensus 116 ~~E~~f~~l~~~~ 128 (542)
.+||+||+|...+
T Consensus 87 ~rEA~f~~l~~~~ 99 (221)
T KOG2723|consen 87 VREAEFFQLEAPV 99 (221)
T ss_pred HHHHHHHccccHH
Confidence 9999999998544
No 20
>KOG3193|consensus
Probab=99.64 E-value=1.7e-16 Score=162.84 Aligned_cols=282 Identities=13% Similarity=0.124 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC--ccchhhhccccchhhhhhhcccceeeccccCCchhhhHHHHHHHHHHHHHHhhh
Q psy13459 228 VFFCLDTACVMIFTAEYLLRLFAA--PDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSR 305 (542)
Q Consensus 228 ~l~~~e~v~~~iF~~E~~lr~~~a--~~~~~y~~s~~ni~Dli~iip~~i~~~~~~~~~~~~~l~~lR~lRllRilkl~r 305 (542)
.+++++..+..+-+..-++-+|.. +...+.+.+.-.+++++...|+++.+++++...+. +-.+|.+.-.-- .+..
T Consensus 91 ~iw~lq~~~a~is~~~ti~~~yl~ysgsvvrllinihfllelitsfpfii~ifipsltyly-vpvflncwlakg--alqa 167 (1087)
T KOG3193|consen 91 KIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFIISIFIPSLTYLY-VPVFLNCWLAKG--ALQA 167 (1087)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHhhcccceeeeeccccceee-chhhhhhhhhhh--HHHH
Confidence 345566666666556555555543 33445555655678999999999988876533211 111122211100 0111
Q ss_pred hccchhhhhhhhhccc----hhhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCccchhhhHHHhhhhccccCCCCcccc
Q psy13459 306 HSQGLRILGYTLKSCA----SELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETI 381 (542)
Q Consensus 306 ~~~~l~~l~~~l~~s~----~~l~~ll~~l~~~i~ifa~l~~~~e~~~~~~~f~s~~~a~y~a~vTltTVGYGDi~p~t~ 381 (542)
.... +.+....|. +++..+...++++++..-|.+..+.+.. ..--+.+.++||+++|++||||||.+|.-|
T Consensus 168 mmnd---l~r~~~~s~sal~~ql~ll~s~l~clift~~c~i~h~qra~--~k~i~lf~s~y~v~vtfstvgygd~~pd~w 242 (1087)
T KOG3193|consen 168 MMND---LNRKSFISSSALFRQLLLLFSVLACLIFTGMCSIEHLQRAR--GKRIDLFTSFYFVMVTFSTVGYGDWYPDYW 242 (1087)
T ss_pred hhhh---HhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHcc--CceeeeeeeEEEEEEEEeeccccccccccc
Confidence 1111 112211222 2233333233333333333333333321 112367789999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccCCCCCCCCCCCCCC-CCCCCcccccc
Q psy13459 382 AGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRDREFVELEVPYNGQAKRPGSPSP-LLSPSHSVIST 460 (542)
Q Consensus 382 ~~~i~~~~~~i~g~~~~al~i~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 460 (542)
.+++++++++.++++++ +.-.+.+...+.++++.......-+. ...+-+........+.-.+. +.+..||..+.
T Consensus 243 ~sql~~vi~icval~~i----p~q~~~l~~tw~erqk~g~~~ss~~~-~e~hvvv~~ttl~~~~i~dfl~efyahp~~q~ 317 (1087)
T KOG3193|consen 243 ASQLCVVILICVALGLI----PKQLDELGQTWSERQKSGTDFSSWNG-VESHVVVTITTLEVEFIRDFLEEFYAHPENQR 317 (1087)
T ss_pred hhhHHHHHHHHHHHhcc----HHHHHHHHHHHHHHhhcCCCcccccc-ccceEEEEEeeeeHHHHHHHHHHHhcCccccc
Confidence 99999999988887776 55566677666666543221111000 00000000000000000000 01344444444
Q ss_pred ccccccccCcc--------------------cCccchHHHHHHHHHHhcccceeecccchhhHHHHHHh--hcCcccccc
Q psy13459 461 ANIFQSCCGRC--------------------CGQRYQKARLARIRIAKASSGAAFVSKKKAAEARMAAQ--ESGLEIDEN 518 (542)
Q Consensus 461 ~~~f~~~~~~~--------------------~Gs~~~~~~l~Rvr~~~a~~~~~l~~~~~~~~~~~d~~--~~~~~~~~~ 518 (542)
.....++|-+. +|+.+++.||+|+++.++++|++|+.++-++..+.|++ .+.+.++..
T Consensus 318 ~~ivllsp~eld~~~rmllkiplwnnrvhyv~gs~lrd~dl~ra~~~~s~acfilsar~~~~k~a~dehtilrswaikdf 397 (1087)
T KOG3193|consen 318 IQIVLLSPAELDNQTRMLLKIPLWNNRVHYVRGSSLRDEDLERANVATSKACFILSARHVNRKVATDEHTILRSWAIKDF 397 (1087)
T ss_pred EEEEEechHHhcchhhhheeccccccceeeecccccccchhhhhhhcccchheeeehhhhccccccchhhHHHHHhhhhc
Confidence 44333333211 79999999999999999999999999999999999988 677777766
Q ss_pred cCCC
Q psy13459 519 YREE 522 (542)
Q Consensus 519 ~~~~ 522 (542)
.|+-
T Consensus 398 apnv 401 (1087)
T KOG3193|consen 398 APNV 401 (1087)
T ss_pred CCch
Confidence 6653
No 21
>KOG0500|consensus
Probab=99.59 E-value=1.7e-14 Score=147.93 Aligned_cols=205 Identities=19% Similarity=0.221 Sum_probs=147.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhCc------------cchhhhccccchhhhhhhcccceeeccccCCchhhhHH
Q psy13459 223 ERYKIVFFCLDTACVMIFTAEYLLRLFAAP------------DRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFV 290 (542)
Q Consensus 223 ~~~~~~l~~~e~v~~~iF~~E~~lr~~~a~------------~~~~y~~s~~ni~Dli~iip~~i~~~~~~~~~~~~~l~ 290 (542)
..+...|..+|+++.++|++|++++..... -+++|+.+....+|+++++|....++..... ...+
T Consensus 25 ~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~~~---~~~r 101 (536)
T KOG0500|consen 25 SSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKDGSA---SLER 101 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcCCcc---hHHH
Confidence 345667789999999999999999987652 1568999999899999999997665543322 2233
Q ss_pred HHHHHHHHHHHHhhhhccchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhhhccCCC------------CCCCC---
Q psy13459 291 TLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVD------------GTNFT--- 355 (542)
Q Consensus 291 ~lR~lRllRilkl~r~~~~l~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~~------------~~~f~--- 355 (542)
+.|++|+.|++........ ++-...+..+..++..+++++++.||+.|++....+ +..|.
T Consensus 102 ~nRllk~yRl~~F~~rTet-----rT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~ 176 (536)
T KOG0500|consen 102 LNRLLKIYRLFEFFDRTET-----RTTYPNAFRISKLVHYCLILFHWNACLYFLISKAIGFTTDDWVYPKINDPEFATCD 176 (536)
T ss_pred HHHHHHHHHHHHHHHHhcc-----ccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccccccCCccCccccccc
Confidence 4455555554444433222 344455566778888889999999999887644311 11122
Q ss_pred ------ccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13459 356 ------SIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRDRE 429 (542)
Q Consensus 356 ------s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~~~~~~~~~~~~~~~~~~~~ 429 (542)
.|..|+||+..||||+| --..|.+.....|.++=.++|+++||.++|.+++..++......+.+....-.+.+
T Consensus 177 ~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~Y 255 (536)
T KOG0500|consen 177 AGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQY 255 (536)
T ss_pred hhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 35669999999999998 45678999999999999999999999999999998888776666555544444444
Q ss_pred HHhcccC
Q psy13459 430 FVELEVP 436 (542)
Q Consensus 430 ~~~~~~~ 436 (542)
++-++++
T Consensus 256 M~~RkV~ 262 (536)
T KOG0500|consen 256 MRYRKVP 262 (536)
T ss_pred HHHhccc
Confidence 4444443
No 22
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.48 E-value=1.7e-13 Score=143.41 Aligned_cols=154 Identities=18% Similarity=0.333 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHhhCccchhhhccccchhhhhhhc-ccceeeccccCCchhhhHHHHHHHHHHHHHHhhhhccchhhhh
Q psy13459 236 CVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAIL-PYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILG 314 (542)
Q Consensus 236 ~~~iF~~E~~lr~~~a~~~~~y~~s~~ni~Dli~ii-p~~i~~~~~~~~~~~~~l~~lR~lRllRilkl~r~~~~l~~l~ 314 (542)
...++.+=+.+.+. -+.|..|+.+..-+++.+++. +++- ..+.++.+-+++++.+.++++.+....
T Consensus 66 ~~g~~l~~~~~~l~-~~~r~~w~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (393)
T PRK10537 66 MLGVFLVLMAIGLL-FRARLAWAISILLLLAALAITLHFYP------------WLKFLIGYCIVLLVALLIYRRDFDRSS 132 (393)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccc------------chhHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34444444444433 223556777766566665553 3211 133456666777777777776654432
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHh-hhhccCCCCCCCCccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHH
Q psy13459 315 YTLKSCASELGFLVFSLAMAIIIFATVM-FYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLS 393 (542)
Q Consensus 315 ~~l~~s~~~l~~ll~~l~~~i~ifa~l~-~~~e~~~~~~~f~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~ 393 (542)
.+.. ....+..+..+++++.++ ++++++. ...+.++.+|+||+++|+|||||||++|.|..||++++++++.
T Consensus 133 ~~~~------~l~~~~~~~~l~~~~~~g~~~~~~~f-~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~ 205 (393)
T PRK10537 133 LAAG------TLFAVISITSLLFYSTFGALYLGDGF-SPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIIL 205 (393)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHcccc-CcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHH
Confidence 2111 233333444556677665 4455432 2456799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy13459 394 GVLVIALPVPVIVSNF 409 (542)
Q Consensus 394 g~~~~al~i~~i~~~f 409 (542)
|+.++++.++.+..-+
T Consensus 206 Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 206 GITVFATSISAIFGPV 221 (393)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988887776544
No 23
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.41 E-value=1.1e-12 Score=106.26 Aligned_cols=76 Identities=33% Similarity=0.635 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 332 AMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFS 410 (542)
Q Consensus 332 ~~~i~ifa~l~~~~e~~~~~~~f~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~ 410 (542)
++.+++++++++...+. ..-.++.+|+||+++|+||+||||++|.++.||+++++.++.|+.++++.++.+.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~---~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 3 LLLVLAFGAIFFYISEG---SEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHTTS---SSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHHh---cccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556666666666221 33569999999999999999999999999999999999999999999999999888764
No 24
>PF11601 Shal-type: Shal-type voltage-gated potassium channels ; InterPro: IPR021645 This family of proteins represents Shal-type voltage-gated potassium channels which interact with Kv channel-interacting proteins to modulate cell surface expression and function of Kv4 channels. The interaction of the Shal-type protein Kv4.2 and the Kv interacting protein KChiP1 forms a structure which is like the structure between calmodulin and its target peptides when they interact. Interactions of an N-terminal alpha helix in Kv4.2 and a C-terminal alpha helix in KChIP1 are essential for the modulation of Kv4.2 by KChIPs []. ; PDB: 2NZ0_B 2I2R_B 1S6C_B.
Probab=99.40 E-value=5.8e-14 Score=84.72 Aligned_cols=28 Identities=82% Similarity=1.582 Sum_probs=26.1
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCC
Q psy13459 2 ASVAAWLPFARAAAIGWVPIATHPLPPP 29 (542)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (542)
|+||+||||+|+++|||.|++.++||.|
T Consensus 1 a~vaaWlPfaraaAIGW~p~a~~~lP~P 28 (28)
T PF11601_consen 1 AGVAAWLPFARAAAIGWLPLAQQPLPPP 28 (28)
T ss_dssp HHCHTTHHHHHHHHTTTSSTTSSSSSSS
T ss_pred CcchhhhhHHHHHhhcceeeccCCCCCC
Confidence 6899999999999999999999999943
No 25
>KOG0499|consensus
Probab=99.39 E-value=9.6e-12 Score=129.72 Aligned_cols=183 Identities=16% Similarity=0.208 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH-----HHhhCcc--------chhhhccccchhhhhhhcccceeeccccCCchhhhHHHHH
Q psy13459 227 IVFFCLDTACVMIFTAEYLL-----RLFAAPD--------RCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLR 293 (542)
Q Consensus 227 ~~l~~~e~v~~~iF~~E~~l-----r~~~a~~--------~~~y~~s~~ni~Dli~iip~~i~~~~~~~~~~~~~l~~lR 293 (542)
+.|.++|++|.+++.+|+++ +|...++ +++|+++.-.-+|+++++|+.+-.+..+.. -
T Consensus 261 ~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~---------p 331 (815)
T KOG0499|consen 261 HYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFN---------P 331 (815)
T ss_pred hhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccc---------h
Confidence 45778999999999999985 2222221 678999988899999999996544332211 1
Q ss_pred HHHHHHHHHhhhhccchhhhhhhhhc-cchhhHHHHHHHHHHHHHHHHHhhhhccCCC--------CCCCCccchhhhHH
Q psy13459 294 VFRVFRIFKFSRHSQGLRILGYTLKS-CASELGFLVFSLAMAIIIFATVMFYAEKNVD--------GTNFTSIPAAFWYT 364 (542)
Q Consensus 294 ~lRllRilkl~r~~~~l~~l~~~l~~-s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~~--------~~~f~s~~~a~y~a 364 (542)
++|+-|++|....|.-.+.|-..+.+ -+.+++..+-.++..+++-||+.|+...... +..-..|..++||+
T Consensus 332 ~wR~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa 411 (815)
T KOG0499|consen 332 MWRANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFA 411 (815)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhH
Confidence 34555555655555554444433322 2334455555667778999999887643211 12235789999999
Q ss_pred HhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 365 IVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRA 419 (542)
Q Consensus 365 ~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~~~~~~~~~~ 419 (542)
+-|+||+| |.--|++..+.+|..+--+.|+++|++.||-+-+.++.....+...
T Consensus 412 ~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~f 465 (815)
T KOG0499|consen 412 VKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYF 465 (815)
T ss_pred HHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHH
Confidence 99999999 9999999999999999999999999999999988887665444433
No 26
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.19 E-value=1.6e-10 Score=130.69 Aligned_cols=123 Identities=13% Similarity=0.145 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhhhhccchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCccchhhhHHHhhhhcc
Q psy13459 292 LRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTL 371 (542)
Q Consensus 292 lR~lRllRilkl~r~~~~l~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~~~~~f~s~~~a~y~a~vTltTV 371 (542)
+-+++++|++|+++..+.++.+..++..+.+.++.++++++++++.||.+++++++.. ...|.++..|++..+..|++.
T Consensus 1298 lIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~-ve~FSTf~sSL~TLFqMLLGD 1376 (1634)
T PLN03223 1298 NIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNA-SVHFSDMTDSINSLFENLLGD 1376 (1634)
T ss_pred HHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-chhhcCHHHHHHHHHHHHHcC
Confidence 3456778888888999999999999999999999999999999999999999888764 458999999999888877642
Q ss_pred cc---CCCCc----ccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 372 GY---GDMVP----ETIAGKIV-GGVCSLSGVLVIALPVPVIVSNFSRIYHQ 415 (542)
Q Consensus 372 GY---GDi~p----~t~~~~i~-~~~~~i~g~~~~al~i~~i~~~f~~~~~~ 415 (542)
.. .|+.+ ..+.|.+| .++.+++.++++|+++++|.+.|++..++
T Consensus 1377 fdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK~d 1428 (1634)
T PLN03223 1377 ITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVKAN 1428 (1634)
T ss_pred chHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 21 11212 23456665 55666677888899999999999987544
No 27
>PF11879 DUF3399: Domain of unknown function (DUF3399); InterPro: IPR024587 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The Shal potassium channel was found in Drosophila melanogaster (Fruit fly). Several vertebrate potassium channels with similar amino acid sequences were subsequently found and, together with the D. melanogaster Shal channel, now constitute the Kv4 family. These channels are the primary subunits contributing to transient, voltage-dependent potassium currents in the nervous system (A currents) and the heart (transient outward current), and are inhibited by free fatty acids []. This family can be further divided into 3 subfamilies, designated Kv4.1(KCND1), Kv4.2(KCND2) and Kv4.3(KCND3). This uncharacterised C-terminal domain is associated with the Shal (Kv4) potassium channel.
Probab=99.13 E-value=2.1e-11 Score=99.98 Aligned_cols=45 Identities=53% Similarity=0.733 Sum_probs=33.9
Q ss_pred ccchhhHHHHHHhhcCccccc-ccCCCChhHHhhhhhhhhhhhccC
Q psy13459 497 SKKKAAEARMAAQESGLEIDE-NYREEDIFEIQHHHLLRCLEKTTN 541 (542)
Q Consensus 497 ~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~e~qhhhll~cle~tt~ 541 (542)
+++.+....+..++.+.+... ..++.++||.|||||||||||||+
T Consensus 2 ~~K~n~~~~~~~~~~g~~~~~~~~k~~s~fE~QHhHLLhCLEKTT~ 47 (104)
T PF11879_consen 2 QYKRNGLLREALEESGSEEEDLCSKSESIFESQHHHLLHCLEKTTN 47 (104)
T ss_pred chhhhcchhhhHHHcCccHHhhhcccccHHHHHHHHHHHHHHHccC
Confidence 345555554455556655554 788899999999999999999997
No 28
>KOG4404|consensus
Probab=98.67 E-value=8.1e-08 Score=94.66 Aligned_cols=88 Identities=23% Similarity=0.341 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHHHHHHHH-HhhhhccCCCCCCCCccchhhhHHHhhhhccccCCCCccc--------chhhHHHHHHHH
Q psy13459 322 SELGFLVFSLAMAIIIFAT-VMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPET--------IAGKIVGGVCSL 392 (542)
Q Consensus 322 ~~l~~ll~~l~~~i~ifa~-l~~~~e~~~~~~~f~s~~~a~y~a~vTltTVGYGDi~p~t--------~~~~i~~~~~~i 392 (542)
..+..+++.+.+.++..+. ++..+|+ ++|+||+||+++|+||+|+||.++-- +..+.+..++|+
T Consensus 158 ~~l~~i~~~~~~~~i~~gaa~fs~~E~-------Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL 230 (350)
T KOG4404|consen 158 YNLVLILFTACILLICCGAAMFSSVEG-------WSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFIL 230 (350)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhcccC-------cchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHH
Confidence 3344444444333333333 4445666 59999999999999999999998752 244567888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 393 SGVLVIALPVPVIVSNFSRIYHQN 416 (542)
Q Consensus 393 ~g~~~~al~i~~i~~~f~~~~~~~ 416 (542)
+|+.+++-+++.++-.|.....+.
T Consensus 231 ~Gl~vi~a~~NllvLrf~t~~~~~ 254 (350)
T KOG4404|consen 231 LGLCVIYALLNLLVLRFMTMNAED 254 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Confidence 999999999999988887655443
No 29
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=98.60 E-value=4e-07 Score=97.52 Aligned_cols=179 Identities=15% Similarity=0.207 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhcccceeeccc---------------cCC----chh----
Q psy13459 230 FCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGIT---------------DND----DVS---- 286 (542)
Q Consensus 230 ~~~e~v~~~iF~~E~~lr~~~a~~~~~y~~s~~ni~Dli~iip~~i~~~~~---------------~~~----~~~---- 286 (542)
.++=.++.++|+..-+.++...+ ++|+++.||++|++.++-.+..++.. .+. +..
T Consensus 214 ~i~f~~~~l~~~~~ei~~i~~~g--~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~ 291 (425)
T PF08016_consen 214 EILFVLFVLYFLYREIKKIRREG--RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQ 291 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHH
Confidence 34444555666666666766554 68999999999998776554322210 000 100
Q ss_pred ------hhHHHHHHHHHHHHHHhhhhccchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCccchh
Q psy13459 287 ------GAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAA 360 (542)
Q Consensus 287 ------~~l~~lR~lRllRilkl~r~~~~l~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~~~~~f~s~~~a 360 (542)
.+..++-++-.+|++|+.|..+.+..+..++..+.+++...++.++++++.||.+++.+.+. ...+|.++..|
T Consensus 292 ~~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~-~~~~f~s~~~s 370 (425)
T PF08016_consen 292 WDQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGS-YSEDFSSFSSS 370 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCCHHHH
Confidence 11123334456777788888889999999999999999999999999999999999988764 34578899888
Q ss_pred hhHHHhhhhc-cccCCCC-cccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy13459 361 FWYTIVTMTT-LGYGDMV-PETIAGKIVGGVCSL-SGVLVIALPVPVIVSNFSR 411 (542)
Q Consensus 361 ~y~a~vTltT-VGYGDi~-p~t~~~~i~~~~~~i-~g~~~~al~i~~i~~~f~~ 411 (542)
+...+.++.+ .+|+|+. +....|.++....++ +.+++++++++++.+.+.+
T Consensus 371 ~~tl~~~l~g~~~~~~~~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 371 LVTLFRMLLGDFDYDELYQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred HHHHHHHhcCCCchhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8766655433 5566653 445667776554444 4566779999999988754
No 30
>KOG3684|consensus
Probab=98.47 E-value=1.8e-06 Score=88.88 Aligned_cols=88 Identities=24% Similarity=0.333 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCC-CCCCccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy13459 327 LVFSLAMAIIIFATVMFYAEKNVDG-TNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVI 405 (542)
Q Consensus 327 ll~~l~~~i~ifa~l~~~~e~~~~~-~~f~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i 405 (542)
++.+.+.++++-|.+.-+.|+.... ..-.+|.+++|...+|.-++||||++|.|..||.++++..++|.++-++.+++|
T Consensus 257 L~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvi 336 (489)
T KOG3684|consen 257 LLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVI 336 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHH
Confidence 3334444555555555566765332 233578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy13459 406 VSNFSRIYH 414 (542)
Q Consensus 406 ~~~f~~~~~ 414 (542)
.-++.....
T Consensus 337 sRKLeLt~a 345 (489)
T KOG3684|consen 337 ARKLELTKA 345 (489)
T ss_pred HHHHHHHHH
Confidence 887765433
No 31
>KOG3840|consensus
Probab=98.39 E-value=2.7e-07 Score=89.77 Aligned_cols=96 Identities=21% Similarity=0.390 Sum_probs=82.1
Q ss_pred CCceEEEEeCCeEEEeeHHHHhcCCCCccccCC---CCCccCCCCceEEE--ecCCcchHHhhcccccCcccCCCCCCHH
Q psy13459 39 DDEKLLINVSGRRFETWRNTLEKYPDSLLGSNE---REFFYDEDSKEYFF--DRDPDIFRHILNYYRTGKLHYPKHECLT 113 (542)
Q Consensus 39 ~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~---~~~~~~~~~~~~f~--DRd~~~F~~Il~~~r~g~l~~p~~~~~~ 113 (542)
+.+++++-|.|.+|..+++.|+..|.|+||++. .+..-..++|||-+ .-...+||.||+||++|.+.||+++.+.
T Consensus 94 ~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvp 173 (438)
T KOG3840|consen 94 EGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVS 173 (438)
T ss_pred CCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchH
Confidence 446999999999999999999999999999973 33446678999977 3355789999999999999999999999
Q ss_pred HHHHHHhhcCCCCcccccccc
Q psy13459 114 SYDEELAFFGILPDVIGDCCY 134 (542)
Q Consensus 114 ~~~~E~~f~~l~~~~~~~cC~ 134 (542)
++.|-.+|..|+.+...--|+
T Consensus 174 ELrEACDYLlipF~a~TvkCq 194 (438)
T KOG3840|consen 174 ELREACDYLLVPFNAQTVKCQ 194 (438)
T ss_pred HHHhhcceEEeecccceeeeh
Confidence 999999999998776655553
No 32
>KOG3599|consensus
Probab=98.36 E-value=4.9e-06 Score=94.00 Aligned_cols=185 Identities=16% Similarity=0.212 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhcccceeecccc----------------C----Cc---
Q psy13459 228 VFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITD----------------N----DD--- 284 (542)
Q Consensus 228 ~l~~~e~v~~~iF~~E~~lr~~~a~~~~~y~~s~~ni~Dli~iip~~i~~~~~~----------------~----~~--- 284 (542)
...++-+++.++|+++-+.++.-. ..++|+++.||++|++.++-.++.+++.. + .+
T Consensus 467 l~~vvf~l~~~yf~~~e~~~i~~~-~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~ 545 (798)
T KOG3599|consen 467 LCEVVFLLFVLYFAVAEGLKIWIH-RLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTE 545 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHH
Confidence 344555566677888888887632 24599999999999977765544332210 0 00
Q ss_pred ---hhh----hHHHHHHHHHHHHHHhhhhccchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcc
Q psy13459 285 ---VSG----AFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSI 357 (542)
Q Consensus 285 ---~~~----~l~~lR~lRllRilkl~r~~~~l~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~~~~~f~s~ 357 (542)
+.. +.-++-++=.++++|+.+..+.++.+..|+.++.+.++.+.+.++++.+.||.+++.+.+. .-.+|.++
T Consensus 546 ~a~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~-~v~~f~~f 624 (798)
T KOG3599|consen 546 VAQWNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGN-QVSDFRTF 624 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccCChHHH
Confidence 001 1122334557788888899999999999999999999999888888889999999888764 23456666
Q ss_pred chhhhHHHhhhhccccCCCCcccc------hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 358 PAAFWYTIVTMTTLGYGDMVPETI------AGKI-VGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQR 418 (542)
Q Consensus 358 ~~a~y~a~vTltTVGYGDi~p~t~------~~~i-~~~~~~i~g~~~~al~i~~i~~~f~~~~~~~~~ 418 (542)
.+|+. |+.-.--||..|.+. .|-+ |.+.++++..+++|+++++|.+.+++......+
T Consensus 625 ~~s~~----t~~~~~~G~~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~~~~~ 688 (798)
T KOG3599|consen 625 VASIV----TLLRYILGDFCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKADLAK 688 (798)
T ss_pred HHHHH----HHHHHHhccCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHhh
Confidence 66644 332222356655432 3443 344455556777899999999999887655444
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.36 E-value=8.9e-07 Score=90.90 Aligned_cols=87 Identities=28% Similarity=0.431 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHhhhhcc--CC----------CC--CCCCccchhhhHHHhhhhccccCC--CCcccchhhHHHHHH
Q psy13459 327 LVFSLAMAIIIFATVMFYAEK--NV----------DG--TNFTSIPAAFWYTIVTMTTLGYGD--MVPETIAGKIVGGVC 390 (542)
Q Consensus 327 ll~~l~~~i~ifa~l~~~~e~--~~----------~~--~~f~s~~~a~y~a~vTltTVGYGD--i~p~t~~~~i~~~~~ 390 (542)
+++..++.+++||+++|.+.. ++ .+ .+..+|.+||+|++.|+||+|||. +.|..+.+-+++++-
T Consensus 41 f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q 120 (336)
T PF01007_consen 41 FVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQ 120 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHH
Confidence 334455667788888775421 10 11 345799999999999999999999 568888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 391 SLSGVLVIALPVPVIVSNFSRIY 413 (542)
Q Consensus 391 ~i~g~~~~al~i~~i~~~f~~~~ 413 (542)
.++|+++.++.+|++...|++..
T Consensus 121 ~~~g~l~~a~~~Glvfar~srP~ 143 (336)
T PF01007_consen 121 SLVGLLLDAFMTGLVFARFSRPK 143 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999998643
No 34
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=98.35 E-value=1.1e-05 Score=92.63 Aligned_cols=182 Identities=13% Similarity=0.147 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhcccceeecc--------c-------c----C--Cc-hhhhHHHH
Q psy13459 235 ACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGI--------T-------D----N--DD-VSGAFVTL 292 (542)
Q Consensus 235 v~~~iF~~E~~lr~~~a~~~~~y~~s~~ni~Dli~iip~~i~~~~--------~-------~----~--~~-~~~~l~~l 292 (542)
+....|..+-...++..+ ...|+++.||++|++.+.-++..+.. . . . .. ...++.+.
T Consensus 397 ~~~~~~~~~e~~~~~~~g-~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ 475 (743)
T TIGR00870 397 TWVDGLRLGEEKLIWLGG-IFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEALFAFA 475 (743)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHHH
Confidence 333445555444444333 45799999999998544333221110 0 0 0 00 01233444
Q ss_pred HHHHHHHHHHhhhhccchhhhhhhhhccch-hhHHHHHHHHHHHHHHHHHhhhhccCCC------------------CCC
Q psy13459 293 RVFRVFRIFKFSRHSQGLRILGYTLKSCAS-ELGFLVFSLAMAIIIFATVMFYAEKNVD------------------GTN 353 (542)
Q Consensus 293 R~lRllRilkl~r~~~~l~~l~~~l~~s~~-~l~~ll~~l~~~i~ifa~l~~~~e~~~~------------------~~~ 353 (542)
-++..+|++.+.+.++.+-.+..++.+.+. .+...+++++++++-||+.++.+..... ...
T Consensus 476 ~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (743)
T TIGR00870 476 LVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEKQGNA 555 (743)
T ss_pred HHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccc
Confidence 555666666666666666667777777777 8888888888888888887765532111 134
Q ss_pred CCccchhhhHHHhhhhccccCCCC-----cccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 354 FTSIPAAFWYTIVTMTTLGYGDMV-----PETIAGKIV-GGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRA 419 (542)
Q Consensus 354 f~s~~~a~y~a~vTltTVGYGDi~-----p~t~~~~i~-~~~~~i~g~~~~al~i~~i~~~f~~~~~~~~~~ 419 (542)
|.++..++...+. ++.|.||.. ...+.|.++ +++.++..++++|++|+++.+.+++..++.+++
T Consensus 556 f~~~~~s~~~lf~--~~~G~~~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~ 625 (743)
T TIGR00870 556 YSTLFETSQELFW--AIIGLGDLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEE 625 (743)
T ss_pred ccCHHHHHHHHHH--HHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH
Confidence 5555444433332 235555542 123456654 555555667788999999999998876554443
No 35
>KOG1418|consensus
Probab=98.26 E-value=3.3e-06 Score=89.80 Aligned_cols=67 Identities=25% Similarity=0.402 Sum_probs=58.8
Q ss_pred CCCCCccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 351 GTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQ 417 (542)
Q Consensus 351 ~~~f~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~~~~~~~~ 417 (542)
...-++|..|+||+++++||+|||+++|.|..||+++++..++|+-++.+.++-++..+........
T Consensus 110 ~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~ 176 (433)
T KOG1418|consen 110 DTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLY 176 (433)
T ss_pred CCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455799999999999999999999999999999999999999999998888888887776554433
No 36
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=98.19 E-value=8.7e-07 Score=72.04 Aligned_cols=84 Identities=23% Similarity=0.339 Sum_probs=63.7
Q ss_pred EEEEeCCeEEEeeHHHHhcCCCCccccCCCCCccCCCCceE-EEecCCcchHHhhcccccCcccCCCCCCHHHHHHHHhh
Q psy13459 43 LLINVSGRRFETWRNTLEKYPDSLLGSNEREFFYDEDSKEY-FFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAF 121 (542)
Q Consensus 43 v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~~-f~DRd~~~F~~Il~~~r~g~l~~p~~~~~~~~~~E~~f 121 (542)
|+++|||+.|.+.+..|...+.. +..+...........++ +.|++++.|+.+|+|+++|++.++.+ ....+.+.|+|
T Consensus 2 v~i~v~~~~~~~h~~iL~~~s~~-f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~-~~~~l~~~a~~ 79 (90)
T smart00225 2 VTLVVGGKKFKAHKAVLAACSPY-FKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEE-NVEELLELADY 79 (90)
T ss_pred eEEEECCEEEehHHHHHhhcCHH-HHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHH-HHHHHHHHHHH
Confidence 67999999999999999988533 33332211111234455 45899999999999999999988776 67889999999
Q ss_pred cCCCCcc
Q psy13459 122 FGILPDV 128 (542)
Q Consensus 122 ~~l~~~~ 128 (542)
|+++++.
T Consensus 80 ~~~~~l~ 86 (90)
T smart00225 80 LQIPGLV 86 (90)
T ss_pred HCcHHHH
Confidence 9997653
No 37
>KOG4404|consensus
Probab=97.69 E-value=8.2e-05 Score=73.83 Aligned_cols=56 Identities=25% Similarity=0.426 Sum_probs=45.2
Q ss_pred CccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 355 TSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFS 410 (542)
Q Consensus 355 ~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~ 410 (542)
+.|+-||||+.+-+||+|||-.+|.|..||+|.++..++|+-+--+....+++.+.
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERln 134 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLN 134 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999885443333344444443
No 38
>KOG3614|consensus
Probab=97.65 E-value=0.0023 Score=74.20 Aligned_cols=183 Identities=15% Similarity=0.220 Sum_probs=91.2
Q ss_pred hHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHhhhheeeecccCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q psy13459 165 TNIRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIFTAEY 244 (542)
Q Consensus 165 ~~~r~~l~~~le~P~ss~~a~~f~~~~~~lI~ls~i~~~~et~~~~~~~~~~~~~~~~~~~~~~l~~~e~v~~~iF~~E~ 244 (542)
..+++|++.+...|-+-++..++.++..++.+.-++ .+++-|. + .++.++=++-++-+.+|-
T Consensus 778 ~~~~~r~~~FysAPIvkFw~~~l~yi~FL~lftYvl--Lv~~~~~------------P----s~~Ew~~~~~iftl~~E~ 839 (1381)
T KOG3614|consen 778 LGKLRRIRAFYSAPIVKFWLNVLSYIAFLLLFTYVL--LVDFQPS------------P----SMWEWILFAWIFTLFLEE 839 (1381)
T ss_pred hhHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHh--eeccCCC------------C----CccchhHHHHHHHHHHHH
Confidence 346777778887886654444443333333333333 3344332 1 122223333334455666
Q ss_pred HHHHhhCcc------chhhhccccchhhhhhhcccceeeccccCC-chh---h----hHHHHHHHHHHHHHHhhhhccch
Q psy13459 245 LLRLFAAPD------RCKFVRSVMSIIDVVAILPYYIGLGITDND-DVS---G----AFVTLRVFRVFRIFKFSRHSQGL 310 (542)
Q Consensus 245 ~lr~~~a~~------~~~y~~s~~ni~Dli~iip~~i~~~~~~~~-~~~---~----~l~~lR~lRllRilkl~r~~~~l 310 (542)
+=..+.... .+-|+-++||++|+++++-|++++++--.+ ... . .-.++-.+|++-+|-+.+ .+
T Consensus 840 vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~~~GRvIl~~d~i~~t~rLl~~f~V~~---~l 916 (1381)
T KOG3614|consen 840 VRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSIYSGRVILCFDFILFTLRLLHYFTVSK---QL 916 (1381)
T ss_pred HHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCccceecceeeeeehHHHHHHHHhhheeecc---cc
Confidence 555554432 234899999999999999998876543221 111 1 112333344444443332 22
Q ss_pred hhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCccchhhhHHHhhh
Q psy13459 311 RILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTM 368 (542)
Q Consensus 311 ~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~~~~~f~s~~~a~y~a~vTl 368 (542)
--....+..-+..+..+++++++.++-|++.-.-+-...++-...=+-+.|||---++
T Consensus 917 GPyI~mv~kMm~dmf~flfllaV~LlsfGVarQaIl~P~e~~~w~l~R~i~y~PYlmi 974 (1381)
T KOG3614|consen 917 GPYIVMVKKMMKDMFFFLFLLAVVLLSFGVARQAILRPDEPRHWWLFRNIFYWPYLML 974 (1381)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHHHHHH
Confidence 2222333455566677776666777777765443322222222223334555554444
No 39
>KOG0510|consensus
Probab=97.49 E-value=0.011 Score=65.51 Aligned_cols=171 Identities=8% Similarity=0.045 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhhCccchhhhccccchhhhhhhcccceeeccccC---CchhhhHH-HHHHHHHHHHHHhhhhccchhhhh
Q psy13459 239 IFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDN---DDVSGAFV-TLRVFRVFRIFKFSRHSQGLRILG 314 (542)
Q Consensus 239 iF~~E~~lr~~~a~~~~~y~~s~~ni~Dli~iip~~i~~~~~~~---~~~~~~l~-~lR~lRllRilkl~r~~~~l~~l~ 314 (542)
++..-..+.++. .+++|+.++-||+|.+.+...++....... ......+. +--++-+++++-+++....+.+.+
T Consensus 575 ~~~~~E~iQifq--qk~~Y~~~i~Nimew~iyts~li~v~~~~~~~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfv 652 (929)
T KOG0510|consen 575 LGILRECIQIFQ--QKRHYFMDIENIMEWFIYTSALITVYPLFFEITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFV 652 (929)
T ss_pred HHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHhhhhheeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCccceeh
Confidence 333333344443 368999999999998777665544322211 11111111 122445667677777777776666
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCccchhhhHHHhhhhc---------cccCCC-Cc-ccchh
Q psy13459 315 YTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTT---------LGYGDM-VP-ETIAG 383 (542)
Q Consensus 315 ~~l~~s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~~~~~f~s~~~a~y~a~vTltT---------VGYGDi-~p-~t~~~ 383 (542)
.-+....+.+...+.+..++++.|+.-+|.+.+... .|.+.+-++--+++.|-+ ++-++. .+ .+...
T Consensus 653 vM~~~I~ktflk~f~vfs~lliaF~lsFYVll~~~~--eFs~p~ms~l~t~~MMiGe~dft~~~~~~~~~~~~l~~~v~s 730 (929)
T KOG0510|consen 653 VMLEVILKTFLKSFMVFSILLIAFGLSFYVLLNKSS--EFSNPFMSKLETFVMMIGENDFTKVMFTEEFKRNSLAHPVLS 730 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCC--CcCCCcchhhhhHHHhhcccccccccccchhhcCcccchHHH
Confidence 666666677777777778888889998888776533 377888777766666532 111111 11 12222
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 384 -KIVGGVCSLSGVLVIALPVPVIVSNFSRIY 413 (542)
Q Consensus 384 -~i~~~~~~i~g~~~~al~i~~i~~~f~~~~ 413 (542)
-+|+.++++.-++++|+.+|..+.-.+...
T Consensus 731 ~~~f~~F~IfmtIvLMNLLiGLAV~DIq~vq 761 (929)
T KOG0510|consen 731 FAIFVLFTIFMTIVLMNLLIGLAVGDIQGVQ 761 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 246777777888899999999988776543
No 40
>KOG1418|consensus
Probab=97.20 E-value=6.6e-05 Score=79.76 Aligned_cols=51 Identities=35% Similarity=0.658 Sum_probs=44.9
Q ss_pred CccchhhhHHHhhhhccccCCCCcccchhh--------HHHHHHHHHHHHHHHHHHHHH
Q psy13459 355 TSIPAAFWYTIVTMTTLGYGDMVPETIAGK--------IVGGVCSLSGVLVIALPVPVI 405 (542)
Q Consensus 355 ~s~~~a~y~a~vTltTVGYGDi~p~t~~~~--------i~~~~~~i~g~~~~al~i~~i 405 (542)
++|.+|+||+++++|||||||++|.+..++ .+..+++++|...++......
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 299 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLLGP 299 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhhcc
Confidence 699999999999999999999999999877 588889999988887776433
No 41
>KOG3609|consensus
Probab=97.17 E-value=0.0072 Score=67.39 Aligned_cols=179 Identities=15% Similarity=0.267 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhCccchhhhccccchhhhhhhcccceeeccc-------cCC-------------c-------hhhhHHH
Q psy13459 239 IFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGIT-------DND-------------D-------VSGAFVT 291 (542)
Q Consensus 239 iF~~E~~lr~~~a~~~~~y~~s~~ni~Dli~iip~~i~~~~~-------~~~-------------~-------~~~~l~~ 291 (542)
=++.+=+-.++..+ ...|++.+||++|++.+.-+...+... ... + ...+.-+
T Consensus 396 G~iw~E~k~lw~~G-~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E~lfAiA~V 474 (822)
T KOG3609|consen 396 GLIWEEIKELWRVG-RDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAEGLFAIANV 474 (822)
T ss_pred HHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHHHHHHHHHH
Confidence 34555555666444 679999999999998776554433211 000 0 0112234
Q ss_pred HHHHHHHHHHHhhhhccchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHh-----hhhccCCC---------CCCCCcc
Q psy13459 292 LRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVM-----FYAEKNVD---------GTNFTSI 357 (542)
Q Consensus 292 lR~lRllRilkl~r~~~~l~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~l~-----~~~e~~~~---------~~~f~s~ 357 (542)
|..+|++-++..-.++..++ -++...+..+...+++.+++++-|++.+ |+.+.... ...|.++
T Consensus 475 ~S~lrl~~i~t~n~~lGPlq---ISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~~~fsti 551 (822)
T KOG3609|consen 475 LSFLKLFYIFTMNPSLGPLQ---ISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTTDSFSTI 551 (822)
T ss_pred HHHHHHHHHhhccccccchh---hhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccccccccccccccH
Confidence 55556665555555555444 4555667777777777777777777753 33322111 1246666
Q ss_pred ch---hhhHHHhhhhccccCCCCc----ccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 358 PA---AFWYTIVTMTTLGYGDMVP----ETIAGKIV-GGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADK 421 (542)
Q Consensus 358 ~~---a~y~a~vTltTVGYGDi~p----~t~~~~i~-~~~~~i~g~~~~al~i~~i~~~f~~~~~~~~~~~~ 421 (542)
.+ +++|++-+++-++--++.- ....|.+. ++..++.=++++|+.|+.+.+.++++......+=|
T Consensus 552 ~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEWK 623 (822)
T KOG3609|consen 552 GESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEWK 623 (822)
T ss_pred HHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHHH
Confidence 54 5689887665543222211 13344443 44344444566799999999999887665554433
No 42
>KOG3676|consensus
Probab=96.90 E-value=0.082 Score=58.97 Aligned_cols=99 Identities=14% Similarity=0.254 Sum_probs=69.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhhhccCCCCC-----------CCCccchhhhHHHhhh--hccccCCCCc--cc---c
Q psy13459 320 CASELGFLVFSLAMAIIIFATVMFYAEKNVDGT-----------NFTSIPAAFWYTIVTM--TTLGYGDMVP--ET---I 381 (542)
Q Consensus 320 s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~~~~-----------~f~s~~~a~y~a~vTl--tTVGYGDi~p--~t---~ 381 (542)
....+...+++.+++++-||..+|.+....++. .-.+..+++..++.|+ .|+||||..- .+ +
T Consensus 539 I~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~ 618 (782)
T KOG3676|consen 539 IFGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPV 618 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchH
Confidence 345677788888888889998888765543322 2234456666666666 6899999754 33 4
Q ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 382 AGKI-VGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQR 418 (542)
Q Consensus 382 ~~~i-~~~~~~i~g~~~~al~i~~i~~~f~~~~~~~~~ 418 (542)
.+++ |+++.+++-+.++|+.|+.+++......++.++
T Consensus 619 ~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~ 656 (782)
T KOG3676|consen 619 LFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEK 656 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHH
Confidence 5554 566666677888999999999988877665543
No 43
>KOG3827|consensus
Probab=96.87 E-value=0.0022 Score=65.41 Aligned_cols=87 Identities=24% Similarity=0.346 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhhhhccC-------CCC-------CCCCccchhhhHHHhhhhccccCCCCccc--chhhHHHHHHH
Q psy13459 328 VFSLAMAIIIFATVMFYAEKN-------VDG-------TNFTSIPAAFWYTIVTMTTLGYGDMVPET--IAGKIVGGVCS 391 (542)
Q Consensus 328 l~~l~~~i~ifa~l~~~~e~~-------~~~-------~~f~s~~~a~y~a~vTltTVGYGDi~p~t--~~~~i~~~~~~ 391 (542)
.+..++-+++||+++|.+... .++ .+-++|..||.|++-|=||+|||-.+++. +.+-+..++-+
T Consensus 70 ~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~ 149 (400)
T KOG3827|consen 70 SLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQS 149 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHH
Confidence 334456678999998875321 111 34578999999999999999999987664 45666778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 392 LSGVLVIALPVPVIVSNFSRIYH 414 (542)
Q Consensus 392 i~g~~~~al~i~~i~~~f~~~~~ 414 (542)
|+|+++=++.+|.+...+++..+
T Consensus 150 I~g~ii~afm~G~i~aKiarPkK 172 (400)
T KOG3827|consen 150 ILGVIINAFMVGAIFAKIARPKK 172 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCchh
Confidence 89999999999999988876543
No 44
>KOG3533|consensus
Probab=96.55 E-value=0.099 Score=60.60 Aligned_cols=113 Identities=16% Similarity=0.223 Sum_probs=73.0
Q ss_pred cchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhhhccCC---------CCC----------------------C---
Q psy13459 308 QGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNV---------DGT----------------------N--- 353 (542)
Q Consensus 308 ~~l~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~---------~~~----------------------~--- 353 (542)
..+..+..++.+.-+++.+..++.++++++|++++|.+.+++ +++ +
T Consensus 2406 ETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdDF~leVD~l~n~~~~~~~l~~~~~~~~~~~tc~~enC~~ 2485 (2706)
T KOG3533|consen 2406 ETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDDFYLEVDRLENDSAVPSPLSATISSGIPSETCPSENCPG 2485 (2706)
T ss_pred HHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccceEEEecccccCCCCCCccccccccCCccccCCCCCCCC
Confidence 344455556666667778888888889999999998775531 000 0
Q ss_pred --------------CCccchhhhHHHhhhh------ccccCCCC--cccchh----hH-H-HHHHHHHHHHHHHHHHHHH
Q psy13459 354 --------------FTSIPAAFWYTIVTMT------TLGYGDMV--PETIAG----KI-V-GGVCSLSGVLVIALPVPVI 405 (542)
Q Consensus 354 --------------f~s~~~a~y~a~vTlt------TVGYGDi~--p~t~~~----~i-~-~~~~~i~g~~~~al~i~~i 405 (542)
-..--+++|.+++|.. +-|-||+- |..+-+ |+ | ..+++++-+++++++.|+|
T Consensus 2486 ~~p~~~~~~~~~e~kersCdtLlMCIvt~lnqGLRnGGGiGDvLR~Psk~E~lF~aRV~YDllFffivIiIVLNLIFGVI 2565 (2706)
T KOG3533|consen 2486 LQPSEKPDDNDDEKKERSCETLLMCIVTTLNQGLRNGGGIGDVLRNPSKWEDLFIARVAYDLLFFFIVIIIVLNLIFGVI 2565 (2706)
T ss_pred CCCCCCCCcccccchhhhhhHHHHHHHHHHhhhcccCCChhhhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0011236899988764 35678874 444422 22 2 3445555678889999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy13459 406 VSNFSRIYHQNQRAD 420 (542)
Q Consensus 406 ~~~f~~~~~~~~~~~ 420 (542)
++.|++..++.++++
T Consensus 2566 IDTFaDLRsEKqkKE 2580 (2706)
T KOG3533|consen 2566 IDTFADLRSEKQKKE 2580 (2706)
T ss_pred hhhHHHHHhhhhHHH
Confidence 999998876655443
No 45
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=92.40 E-value=0.21 Score=44.67 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=43.0
Q ss_pred CccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 355 TSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRI 412 (542)
Q Consensus 355 ~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~~~ 412 (542)
.++.+++|+++.+++. +-++..|.+..+|++.+++.++++++.+...+.+.+.+...
T Consensus 43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3566788888878776 44779999999999999999999999999999999988754
No 46
>PLN03223 Polycystin cation channel protein; Provisional
Probab=87.08 E-value=29 Score=41.90 Aligned_cols=193 Identities=10% Similarity=0.019 Sum_probs=97.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhC----ccchhhhccccchhhhhhhcccceeeccc--------------------
Q psy13459 225 YKIVFFCLDTACVMIFTAEYLLRLFAA----PDRCKFVRSVMSIIDVVAILPYYIGLGIT-------------------- 280 (542)
Q Consensus 225 ~~~~l~~~e~v~~~iF~~E~~lr~~~a----~~~~~y~~s~~ni~Dli~iip~~i~~~~~-------------------- 280 (542)
....+.++-.++.++|+.+=+.+++.. +.++.||+++|||+|++.|+-.+..+++-
T Consensus 1174 fvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIY 1253 (1634)
T PLN03223 1174 VRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIY 1253 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhh
Confidence 344555666666777778777777653 34679999999999997765443322110
Q ss_pred c-C------------------Cchh-h------hHH----HHHHHHHHHHHHhhhhccchhhhhhhhhccchhhHHHHHH
Q psy13459 281 D-N------------------DDVS-G------AFV----TLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFS 330 (542)
Q Consensus 281 ~-~------------------~~~~-~------~l~----~lR~lRllRilkl~r~~~~l~~l~~~l~~s~~~l~~ll~~ 330 (542)
. . .... . ... +.-++=+++++|++|..+-.+.+........+.+.-++-+
T Consensus 1254 K~ls~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F 1333 (1634)
T PLN03223 1254 KNLSASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHF 1333 (1634)
T ss_pred hhhhhhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Confidence 0 0 0000 0 001 1222345667777777655444433222222223333333
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCccchhhhHHHhhhhccccCCCCcccc----h---hhHHHHHHHHH-HHHHHHHHH
Q psy13459 331 LAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETI----A---GKIVGGVCSLS-GVLVIALPV 402 (542)
Q Consensus 331 l~~~i~ifa~l~~~~e~~~~~~~f~s~~~a~y~a~vTltTVGYGDi~p~t~----~---~~i~~~~~~i~-g~~~~al~i 402 (542)
+++++++|-.... +..-.-..... -+.+|.-++.||-.+-.||...... . .++++.++++. -++++-+++
T Consensus 1334 ~IIF~IVF~AFAq-LG~LLFGt~ve-~FSTf~sSL~TLFqMLLGDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILL 1411 (1634)
T PLN03223 1334 FVIFGMVFVGYAF-IGHVIFGNASV-HFSDMTDSINSLFENLLGDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILF 1411 (1634)
T ss_pred HHHHHHHHHHHHH-HHHHHhccCch-hhcCHHHHHHHHHHHHHcCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 3333333322221 12222222222 2356677788888888888753211 1 12333333322 233335666
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy13459 403 PVIVSNFSRIYHQNQRA 419 (542)
Q Consensus 403 ~~i~~~f~~~~~~~~~~ 419 (542)
++++..+.+.+++.+.+
T Consensus 1412 NMFIAII~DSFsEVK~d 1428 (1634)
T PLN03223 1412 NFLLAIICDAFGEVKAN 1428 (1634)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 67777777777776654
No 47
>PHA03098 kelch-like protein; Provisional
Probab=87.01 E-value=0.42 Score=52.78 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=61.5
Q ss_pred CCCceEEEEeCCeEEEeeHHHHhcCCCCccccCCCCCccCCCCceEEE-ecCCcchHHhhcccccCcccCCCCCCHHHHH
Q psy13459 38 ADDEKLLINVSGRRFETWRNTLEKYPDSLLGSNEREFFYDEDSKEYFF-DRDPDIFRHILNYYRTGKLHYPKHECLTSYD 116 (542)
Q Consensus 38 ~~~~~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~~f~-DRd~~~F~~Il~~~r~g~l~~p~~~~~~~~~ 116 (542)
-.|-.|+++|+|+.|...+..|....+- +..+...... .+++-+ + +++.|+.||+|+.||++.+..+- ...+.
T Consensus 9 ~~Dv~l~~~~~~~~~~~Hk~vLaa~S~y-F~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~-~~~ll 82 (534)
T PHA03098 9 FCDESIIIVNGGGIIKVHKIILSSSSEY-FKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNN-VKDIL 82 (534)
T ss_pred CCCEEEEEEcCCEEEEeHHHHHHhhhHH-HHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHH-HHHHH
Confidence 3456777788999999999999975322 2222111111 345544 5 99999999999999999875544 77788
Q ss_pred HHHhhcCCCCcc
Q psy13459 117 EELAFFGILPDV 128 (542)
Q Consensus 117 ~E~~f~~l~~~~ 128 (542)
+=|++|+++.+.
T Consensus 83 ~~A~~l~~~~l~ 94 (534)
T PHA03098 83 SIANYLIIDFLI 94 (534)
T ss_pred HHHHHhCcHHHH
Confidence 899999997754
No 48
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=77.34 E-value=0.64 Score=39.17 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=58.1
Q ss_pred ceEEEEeC-CeEEEeeHHHHhcCCCCccccCCCCC-ccCCCCceEEE-ecCCcchHHhhcccccCcccCCCCCCHHHHHH
Q psy13459 41 EKLLINVS-GRRFETWRNTLEKYPDSLLGSNEREF-FYDEDSKEYFF-DRDPDIFRHILNYYRTGKLHYPKHECLTSYDE 117 (542)
Q Consensus 41 ~~v~lNVg-G~~f~t~~~tl~~~p~t~l~~~~~~~-~~~~~~~~~f~-DRd~~~F~~Il~~~r~g~l~~p~~~~~~~~~~ 117 (542)
.-++|.|| |.+|.+.+..|...- .++..+.... .......++=+ |=+++.|+.+++|+.+|.+..+.......+.+
T Consensus 11 ~D~~i~v~d~~~~~vhk~iL~~~S-~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~ 89 (111)
T PF00651_consen 11 SDVTIRVGDGKTFYVHKNILAARS-PYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSDENVEELLE 89 (111)
T ss_dssp --EEEEETTTEEEEE-HHHHHHHB-HHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHH
T ss_pred CCEEEEECCCEEEeechhhhhccc-hhhhhcccccccccccccccccccccccccccccccccCCcccCCHHHHHHHHHH
Confidence 35899999 999999999997631 2333332221 11111124433 56789999999999999987763455788888
Q ss_pred HHhhcCCCCcc
Q psy13459 118 ELAFFGILPDV 128 (542)
Q Consensus 118 E~~f~~l~~~~ 128 (542)
=|++|+++.+.
T Consensus 90 lA~~~~~~~L~ 100 (111)
T PF00651_consen 90 LADKLQIPELK 100 (111)
T ss_dssp HHHHTTBHHHH
T ss_pred HHHHhCcHHHH
Confidence 99999986653
No 49
>KOG1053|consensus
Probab=76.95 E-value=12 Score=42.88 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=41.8
Q ss_pred ccchhhh--HHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 356 SIPAAFW--YTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFS 410 (542)
Q Consensus 356 s~~~a~y--~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~ 410 (542)
++..|+| |+++-=.||- --.|+.+.+|+.+.+|.++++++++...+.+...+.
T Consensus 609 tigkaiwllwaLvFnnsVp--v~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMI 663 (1258)
T KOG1053|consen 609 TIGKAIWLLWALVFNNSVP--VENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMI 663 (1258)
T ss_pred ehhhHHHHHHHHHhCCCcC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788887 8887655554 235778899999999999999999888877766554
No 50
>KOG4440|consensus
Probab=76.88 E-value=4.8 Score=44.06 Aligned_cols=81 Identities=11% Similarity=0.342 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHhhhhccCCC------------CCCCCccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHH
Q psy13459 329 FSLAMAIIIFATVMFYAEKNVD------------GTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVL 396 (542)
Q Consensus 329 ~~l~~~i~ifa~l~~~~e~~~~------------~~~f~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~ 396 (542)
+++++-+++-|+++|.+++-.+ ...--++..|+||+--.+..-|-|.-+|.+-..|+++++|.=+.++
T Consensus 574 ~lv~~SVhvVal~lYlLDrfSPFgRFk~~ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMI 653 (993)
T KOG4440|consen 574 LLVGLSVHVVALMLYLLDRFSPFGRFKVNDSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMI 653 (993)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccceeeccCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhhee
Confidence 3455666777777777655322 1222467889998888887888889999999999999999888888
Q ss_pred HHHHHHHHHHHHH
Q psy13459 397 VIALPVPVIVSNF 409 (542)
Q Consensus 397 ~~al~i~~i~~~f 409 (542)
++|...+.+...+
T Consensus 654 iVASYTANLAAFL 666 (993)
T KOG4440|consen 654 IVASYTANLAAFL 666 (993)
T ss_pred eehhhhhhhhhhe
Confidence 8777766665533
No 51
>KOG1545|consensus
Probab=76.20 E-value=4.6 Score=41.39 Aligned_cols=46 Identities=22% Similarity=0.199 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhhhccchhhhhhhhhccchhhHHHHHHHHHHH
Q psy13459 289 FVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAI 335 (542)
Q Consensus 289 l~~lR~lRllRilkl~r~~~~l~~l~~~l~~s~~~l~~ll~~l~~~i 335 (542)
+.+||++|+.|+||+.+.++.-+-| +.|...++.-..=+-++++++
T Consensus 323 lAILRViRLVRVFRIFKLSRHSkGL-QILGqTl~aSmrElgLLIFFl 368 (507)
T KOG1545|consen 323 LAILRVIRLVRVFRIFKLSRHSKGL-QILGQTLRASMRELGLLIFFL 368 (507)
T ss_pred HHHHHHHHHHHHhhheeeccccchH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5588999999999998877765444 455555544444433333333
No 52
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=74.44 E-value=25 Score=36.99 Aligned_cols=100 Identities=15% Similarity=0.250 Sum_probs=52.7
Q ss_pred hhhhhhhhccchhhHHHHHHHHHHHHHHHHHhh-------hhccCCCCCCCCccchhhhHHHhhhhccccCCCCcccchh
Q psy13459 311 RILGYTLKSCASELGFLVFSLAMAIIIFATVMF-------YAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAG 383 (542)
Q Consensus 311 ~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~l~~-------~~e~~~~~~~f~s~~~a~y~a~vTltTVGYGDi~p~t~~~ 383 (542)
+.+..++..++-.+..+.+.+.+..+-.|.--| +.++.....-+..|..+|-|+++.+-+++-++.......+
T Consensus 48 r~lLstia~smitv~~~~fSi~~val~~assq~sPR~l~~f~~d~~~q~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~ 127 (371)
T PF10011_consen 48 RTLLSTIAGSMITVTGFVFSITLVALQLASSQFSPRLLRNFMRDRVTQVVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLS 127 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHccccccccCcchH
Confidence 334455555555555555555444443333211 2222222233456777888888888777655442333334
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 384 KIVGGVCSLSGVLVIALPVPVIVSNFS 410 (542)
Q Consensus 384 ~i~~~~~~i~g~~~~al~i~~i~~~f~ 410 (542)
-.+++++.+.+++++-+++.-+...++
T Consensus 128 ~~~a~~l~i~~v~~li~fI~~i~~~iq 154 (371)
T PF10011_consen 128 VFIALALAILSVVLLIYFIHHIARSIQ 154 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455556666666666666666655443
No 53
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=73.60 E-value=14 Score=40.47 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=33.9
Q ss_pred ccchhhhHHHhhhhccccCC--CCcccchh------hHHHHHHHHHH-HHHHHHHH
Q psy13459 356 SIPAAFWYTIVTMTTLGYGD--MVPETIAG------KIVGGVCSLSG-VLVIALPV 402 (542)
Q Consensus 356 s~~~a~y~a~vTltTVGYGD--i~p~t~~~------~i~~~~~~i~g-~~~~al~i 402 (542)
++.++++=++.++.|||-|= ..+.+..+ |++.++.|++| +-++.+.+
T Consensus 424 ~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~GRleil~~lv 479 (499)
T COG0168 424 PFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIGRLEILTVLV 479 (499)
T ss_pred cHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhhccchhhHHH
Confidence 68899998999999998643 33334444 99999999988 66664444
No 54
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=73.08 E-value=15 Score=33.64 Aligned_cols=80 Identities=19% Similarity=0.261 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhcccceeeccccCCchhhhHHHHHHHHHHHHHHhh
Q psy13459 225 YKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFS 304 (542)
Q Consensus 225 ~~~~l~~~e~v~~~iF~~E~~lr~~~a~~~~~y~~s~~ni~Dli~iip~~i~~~~~~~~~~~~~l~~lR~lRllRilkl~ 304 (542)
....+.++|.+..+...+++.++...... . ......++++|++|++|+++..
T Consensus 29 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~---~-------------------------~~~~~~~~~l~~~R~l~~~~~~ 80 (200)
T PF00520_consen 29 FRSWWNWFDFISVIPSIVSVILRSYGSAS---A-------------------------QSLLRIFRLLRLLRLLRLLRRF 80 (200)
T ss_dssp CCSHHHHHHHHHHHHHCCHHCCHCSS--H---H-------------------------CHCHHHHHHHHHHHHHHHHHTT
T ss_pred hcChhhccccccccccccccccccccccc---c-------------------------cceEEEEEeecccccccccccc
Confidence 34467778877777776676665442211 1 1224456667777777777777
Q ss_pred hhccch-hhhhhhhhccchhhHHHHHHHH
Q psy13459 305 RHSQGL-RILGYTLKSCASELGFLVFSLA 332 (542)
Q Consensus 305 r~~~~l-~~l~~~l~~s~~~l~~ll~~l~ 332 (542)
+..+.+ +.+...+....+-+..+.++++
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 109 (200)
T PF00520_consen 81 RSLRRLLRALIRSFPDLFKFILLLFIVLL 109 (200)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc
Confidence 754444 4444444444444444333333
No 55
>KOG1052|consensus
Probab=72.85 E-value=11 Score=42.81 Aligned_cols=57 Identities=16% Similarity=0.338 Sum_probs=46.8
Q ss_pred CCccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 354 FTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSR 411 (542)
Q Consensus 354 f~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~~ 411 (542)
+.+...++|+++.++..-| ++..|.+..+|++..++.++++++.+...+.+.+.+..
T Consensus 379 ~~~~~~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~ 435 (656)
T KOG1052|consen 379 LFSLLNCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTV 435 (656)
T ss_pred EeecccchhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455566788888888887 56999999999999999999999998888888776653
No 56
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=66.79 E-value=55 Score=36.22 Aligned_cols=99 Identities=12% Similarity=0.173 Sum_probs=56.5
Q ss_pred cchhhhhhhhhccchhhHHHHHHHHHHHHHHHH-HhhhhccC---CCCCCCCccchhhhHHHhhhhccc--cCCCCcccc
Q psy13459 308 QGLRILGYTLKSCASELGFLVFSLAMAIIIFAT-VMFYAEKN---VDGTNFTSIPAAFWYTIVTMTTLG--YGDMVPETI 381 (542)
Q Consensus 308 ~~l~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~-l~~~~e~~---~~~~~f~s~~~a~y~a~vTltTVG--YGDi~p~t~ 381 (542)
+.-..+++.+.........+++++...+++.+. +....+.. ..+.....+.+.+|=..-...|+| .|++.+.|+
T Consensus 399 rtpe~~gRkI~~~eik~A~~vilv~~~lVl~~taial~~~~~~~~~~n~g~hgfseiLyE~~SA~~tnGss~gGLt~~t~ 478 (559)
T PRK05482 399 RTPEYLGKKIEAREMKLAALAILVHPLLVLVGTALALATPAGRAGISNPGPHGFSEVLYAYTSAAANNGSAFAGLGANTP 478 (559)
T ss_pred CCCeEEccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCHHHHHHHHHhhccccccccccCCCCCH
Confidence 333445555544433444444444333333333 33323321 011223467777887777777777 466889999
Q ss_pred hhhHHHHHHHHHH-HHHHHHHHHHHH
Q psy13459 382 AGKIVGGVCSLSG-VLVIALPVPVIV 406 (542)
Q Consensus 382 ~~~i~~~~~~i~g-~~~~al~i~~i~ 406 (542)
.+++..++.|++| +..+...+++..
T Consensus 479 ~~niil~~~M~iGR~Gpit~~lAlAg 504 (559)
T PRK05482 479 FWNLTLGIAMLLGRFLPIIPVLAIAG 504 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 655655555443
No 57
>KOG3733|consensus
Probab=64.81 E-value=44 Score=35.26 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=57.5
Q ss_pred HhhhhccchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCccch------------hhhHHHhhhh
Q psy13459 302 KFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPA------------AFWYTIVTMT 369 (542)
Q Consensus 302 kl~r~~~~l~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~l~~~~e~~~~~~~f~s~~~------------a~y~a~vTlt 369 (542)
|...+++..+.+..|++.+++.+...+....++-+-|...+|.+-+. -+..|.|... -|+=++.+|.
T Consensus 392 RYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGP-YHdKFrsLntvsECLFSLINGDDMFaTFA~mq 470 (566)
T KOG3733|consen 392 RYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGP-YHDKFRSLNTVSECLFSLINGDDMFATFATMQ 470 (566)
T ss_pred HHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecc-hHHhhhhHHHHHHHHHHhhCchhHHHHHHHHh
Confidence 33445566778888999988888777655444444444445544332 1223433321 1222222222
Q ss_pred ccccCCCCcccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 370 TLGYGDMVPETIAGKIV-GGVCSLSGVLVIALPVPVIVSNFSRIY 413 (542)
Q Consensus 370 TVGYGDi~p~t~~~~i~-~~~~~i~g~~~~al~i~~i~~~f~~~~ 413 (542)
. -.+-.-..++++ -+++.+.-.++++++|+.|.+....+.
T Consensus 471 q----kS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK 511 (566)
T KOG3733|consen 471 Q----KSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIK 511 (566)
T ss_pred h----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 1 000111123443 456666668888999999998876554
No 58
>KOG3713|consensus
Probab=61.81 E-value=1.1e+02 Score=33.13 Aligned_cols=62 Identities=24% Similarity=0.375 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCccchhhhccccchhhhhhhcccceeeccccCCchhhhHHHHHHHHHHHHHHhhhhc
Q psy13459 228 VFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHS 307 (542)
Q Consensus 228 ~l~~~e~v~~~iF~~E~~lr~~~a~~~~~y~~s~~ni~Dli~iip~~i~~~~~~~~~~~~~l~~lR~lRllRilkl~r~~ 307 (542)
.+.++|.+.+.=|-+|.++-.... ...+.+.+. ..+..++|++|++|++++-|-..-.
T Consensus 274 pLNIIDllAIlPFYielll~~~~~-~~~~~l~~~---------------------~~vvrvlR~lRI~RI~KLaRhS~GL 331 (477)
T KOG3713|consen 274 PLNIIDLLAILPFYLELLLTLFGG-ESLKELENA---------------------GLVVRVLRVLRILRIFKLARHSTGL 331 (477)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcc-chHHHHhhh---------------------hhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 455666666666666666654433 122333332 1235678999999999998887777
Q ss_pred cchh
Q psy13459 308 QGLR 311 (542)
Q Consensus 308 ~~l~ 311 (542)
+.+-
T Consensus 332 r~lg 335 (477)
T KOG3713|consen 332 RTLG 335 (477)
T ss_pred HHHH
Confidence 7664
No 59
>PHA02790 Kelch-like protein; Provisional
Probab=60.77 E-value=3.5 Score=44.99 Aligned_cols=83 Identities=18% Similarity=0.140 Sum_probs=59.1
Q ss_pred EEEeCCeEEEeeHHHHhcC---CCCccccCCCCCccCCCCceEE---EecCCcchHHhhcccccCcccCCCCCCHHHHHH
Q psy13459 44 LINVSGRRFETWRNTLEKY---PDSLLGSNEREFFYDEDSKEYF---FDRDPDIFRHILNYYRTGKLHYPKHECLTSYDE 117 (542)
Q Consensus 44 ~lNVgG~~f~t~~~tl~~~---p~t~l~~~~~~~~~~~~~~~~f---~DRd~~~F~~Il~~~r~g~l~~p~~~~~~~~~~ 117 (542)
.+-|.|..|...|..|+.. -..+|.+..++. +.++. .|=|++.++.||+|..||++.+..+ ..+.+++
T Consensus 25 ~~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es-----~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~-nV~~ll~ 98 (480)
T PHA02790 25 IIEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKN-----KDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSH-NVVNLLR 98 (480)
T ss_pred EEEEcCcEEeeehhhhhhcCHHHHHHhcCCcccc-----ccceEEEecCcCHHHHHHHHHhheeeeEEEecc-cHHHHHH
Confidence 3557788999999999884 234444322222 12333 2778999999999999999998554 6888999
Q ss_pred HHhhcCCCCccccccc
Q psy13459 118 ELAFFGILPDVIGDCC 133 (542)
Q Consensus 118 E~~f~~l~~~~~~~cC 133 (542)
=|.+++++.. .+.||
T Consensus 99 aA~~Lqi~~v-~~~C~ 113 (480)
T PHA02790 99 ASILTSVEFI-IYTCI 113 (480)
T ss_pred HHHHhChHHH-HHHHH
Confidence 9999999754 34455
No 60
>PHA02713 hypothetical protein; Provisional
Probab=60.49 E-value=4.5 Score=45.02 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=59.1
Q ss_pred eEEEEeC-CeEEEeeHHHHhcCC---CCccccCCCCCccCCCCceEEE-ecCCcchHHhhcccccCcccCCCCCCHHHHH
Q psy13459 42 KLLINVS-GRRFETWRNTLEKYP---DSLLGSNEREFFYDEDSKEYFF-DRDPDIFRHILNYYRTGKLHYPKHECLTSYD 116 (542)
Q Consensus 42 ~v~lNVg-G~~f~t~~~tl~~~p---~t~l~~~~~~~~~~~~~~~~f~-DRd~~~F~~Il~~~r~g~l~~p~~~~~~~~~ 116 (542)
-|+|-|+ |+.|...+..|+... ..+|....++. ...+++-+ |=+++.|+.||+|+.||++ . ......++
T Consensus 27 DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~---~~~~~v~l~~v~~~~~~~ll~y~Yt~~i--~-~~nv~~ll 100 (557)
T PHA02713 27 DVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIR---DLVTRVNLQMFDKDAVKNIVQYLYNRHI--S-SMNVIDVL 100 (557)
T ss_pred CEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhh---ccCceEEeccCCHHHHHHHHHHhcCCCC--C-HHHHHHHH
Confidence 5789998 999999999999743 33333211110 12345544 5789999999999999985 2 33477888
Q ss_pred HHHhhcCCCCccccccc
Q psy13459 117 EELAFFGILPDVIGDCC 133 (542)
Q Consensus 117 ~E~~f~~l~~~~~~~cC 133 (542)
+=|.+++|+... ..||
T Consensus 101 ~aA~~lqi~~l~-~~C~ 116 (557)
T PHA02713 101 KCADYLLIDDLV-TDCE 116 (557)
T ss_pred HHHHHHCHHHHH-HHHH
Confidence 999999997654 3344
No 61
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=55.76 E-value=4e+02 Score=31.25 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhccc
Q psy13459 286 SGAFVTLRVFRVFRIFKFSRHSQG 309 (542)
Q Consensus 286 ~~~l~~lR~lRllRilkl~r~~~~ 309 (542)
...++++|++|+.|+.++.+....
T Consensus 168 ~~~l~llrl~Rl~ri~~~~~~le~ 191 (823)
T PLN03192 168 YSLLGLLRFWRLRRVKQLFTRLEK 191 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777665544
No 62
>KOG1054|consensus
Probab=54.63 E-value=13 Score=40.68 Aligned_cols=54 Identities=22% Similarity=0.526 Sum_probs=44.8
Q ss_pred ccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 356 SIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFS 410 (542)
Q Consensus 356 s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~ 410 (542)
++.+++||++....--| -||.|.+..||+...+|-++-+++++...+.+...+.
T Consensus 595 gifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 595 GIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred hhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 57799999999998888 7999999999999988888888887666666655443
No 63
>PRK10750 potassium transporter; Provisional
Probab=46.78 E-value=88 Score=34.20 Aligned_cols=46 Identities=24% Similarity=0.161 Sum_probs=33.1
Q ss_pred ccchhhhHHHhhhhccccCC--C----CcccchhhHHHHHHHHHH-HHHHHHH
Q psy13459 356 SIPAAFWYTIVTMTTLGYGD--M----VPETIAGKIVGGVCSLSG-VLVIALP 401 (542)
Q Consensus 356 s~~~a~y~a~vTltTVGYGD--i----~p~t~~~~i~~~~~~i~g-~~~~al~ 401 (542)
+..+|+--+..+++++|.|- . ..-++.+|++.++.|+.| +-++.+.
T Consensus 421 ~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllGRLEi~tvl 473 (483)
T PRK10750 421 DDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLL 473 (483)
T ss_pred cHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888877543 3 344678999999999988 5555443
No 64
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=44.89 E-value=15 Score=33.89 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=35.3
Q ss_pred CCccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHH
Q psy13459 354 FTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVI 398 (542)
Q Consensus 354 f~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~ 398 (542)
.-....+.||...+++++|||++.|.+..+.......++.+....
T Consensus 115 i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~ 159 (212)
T COG1226 115 ILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGD 159 (212)
T ss_pred EEEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCc
Confidence 456778889999999999999999998887777666666554444
No 65
>KOG4441|consensus
Probab=44.26 E-value=11 Score=42.19 Aligned_cols=89 Identities=22% Similarity=0.327 Sum_probs=63.1
Q ss_pred eEEEEeCCeEEEeeHHHHhcCCCCccccCCCCCccCCCCceEE-EecCCcchHHhhcccccCcccCCCCCCHHHHHHHHh
Q psy13459 42 KLLINVSGRRFETWRNTLEKYPDSLLGSNEREFFYDEDSKEYF-FDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELA 120 (542)
Q Consensus 42 ~v~lNVgG~~f~t~~~tl~~~p~t~l~~~~~~~~~~~~~~~~f-~DRd~~~F~~Il~~~r~g~l~~p~~~~~~~~~~E~~ 120 (542)
-|.|-|||+.|...+-.|+..-. ++-.|.....-.....++- .+=||+.++.+++|..||++.+ .+..+..+++=|.
T Consensus 38 Dv~L~v~~~~~~aHR~VLAa~S~-YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i-~~~nVq~ll~aA~ 115 (571)
T KOG4441|consen 38 DVTLLVGDREFPAHRVVLAACSP-YFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEI-SEDNVQELLEAAS 115 (571)
T ss_pred eEEEEECCeeechHHHHHHhccH-HHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEe-chHhHHHHHHHHH
Confidence 68999999999999999987421 1222221111112344443 3679999999999999999874 5667889999999
Q ss_pred hcCCCCccccccc
Q psy13459 121 FFGILPDVIGDCC 133 (542)
Q Consensus 121 f~~l~~~~~~~cC 133 (542)
+++|.+.. ..||
T Consensus 116 ~lQi~~v~-~~C~ 127 (571)
T KOG4441|consen 116 LLQIPEVV-DACC 127 (571)
T ss_pred HhhhHHHH-HHHH
Confidence 99987654 3454
No 66
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=43.89 E-value=92 Score=31.59 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=36.6
Q ss_pred HHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 363 YTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQN 416 (542)
Q Consensus 363 ~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~~~~~~~ 416 (542)
|.+.|=+.-+.|+ ..+....++.+++++....++++++|+....+-..|.++
T Consensus 53 ~~f~t~~~~~~~~--~gGi~~Ai~GTl~~~~~~~li~~PiGv~aaIYL~EYa~~ 104 (292)
T COG0581 53 LEFFTGSPSPPGE--GGGIGPAIVGTLYLILLAILIGVPLGIGAGIYLAEYAKK 104 (292)
T ss_pred hhhhcCCCCCCCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455543333333 233444688999999999999999999999888777643
No 67
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=39.71 E-value=67 Score=33.41 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=25.1
Q ss_pred cchhhhHHHhhhhcccc--CCCCcc-cc---hhhHHHHHHHHHH
Q psy13459 357 IPAAFWYTIVTMTTLGY--GDMVPE-TI---AGKIVGGVCSLSG 394 (542)
Q Consensus 357 ~~~a~y~a~vTltTVGY--GDi~p~-t~---~~~i~~~~~~i~g 394 (542)
+.++++=++..++|||. |...|. +. .+|++.++.|+.|
T Consensus 295 ~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~G 338 (354)
T PF02386_consen 295 FFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLG 338 (354)
T ss_dssp -HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHh
Confidence 67888888889999875 332222 33 3899999999988
No 68
>KOG3088|consensus
Probab=37.37 E-value=4.5e+02 Score=26.55 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHH
Q psy13459 384 KIVGGVCSLSGVLVI 398 (542)
Q Consensus 384 ~i~~~~~~i~g~~~~ 398 (542)
.+.+.+++++|.+++
T Consensus 238 ~i~v~i~m~i~a~~F 252 (313)
T KOG3088|consen 238 NIAVGILMLIGAGLF 252 (313)
T ss_pred chHHHHHHHHHHHHH
Confidence 345555556555555
No 69
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=36.74 E-value=62 Score=34.24 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=29.9
Q ss_pred CCccchhhhHHHhhhhccccCC--CCcccchhhHHHHHHHHHH
Q psy13459 354 FTSIPAAFWYTIVTMTTLGYGD--MVPETIAGKIVGGVCSLSG 394 (542)
Q Consensus 354 f~s~~~a~y~a~vTltTVGYGD--i~p~t~~~~i~~~~~~i~g 394 (542)
...+.++.+++..+++|.||.- ..--++.++++.++.|++|
T Consensus 229 ~~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIG 271 (390)
T TIGR00933 229 FGALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIG 271 (390)
T ss_pred HHHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHc
Confidence 3457788899999999999853 3333556677777777776
No 70
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=33.87 E-value=14 Score=36.83 Aligned_cols=9 Identities=11% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q psy13459 186 VFYYVTGFF 194 (542)
Q Consensus 186 ~f~~~~~~l 194 (542)
.|..+..++
T Consensus 26 ~~~~llll~ 34 (381)
T PF05297_consen 26 LFGLLLLLV 34 (381)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 444433333
No 71
>COG3817 Predicted membrane protein [Function unknown]
Probab=30.89 E-value=1.2e+02 Score=30.07 Aligned_cols=43 Identities=28% Similarity=0.495 Sum_probs=30.5
Q ss_pred CCCCCccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHH
Q psy13459 351 GTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSG 394 (542)
Q Consensus 351 ~~~f~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g 394 (542)
.++-..+..+.+|..-.+|-+| ||..|.-..|-+......+.|
T Consensus 27 ktnp~r~~t~~FW~l~~~tFl~-g~~lp~~viG~ivillAliag 69 (313)
T COG3817 27 KTNPVRFGTGLFWGLFSLTFLG-GDRLPNIVIGLIVILLALIAG 69 (313)
T ss_pred cCCCceecchHHHHHHHHHHhc-cccccchhHhHHHHHHHHHHh
Confidence 3445688899999999999988 898887666655444433333
No 72
>KOG4298|consensus
Probab=30.70 E-value=4.6e+02 Score=24.68 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 384 KIVGGVCSLSGVLVIALPVPVIVSNFSRIYH 414 (542)
Q Consensus 384 ~i~~~~~~i~g~~~~al~i~~i~~~f~~~~~ 414 (542)
.+-+++++-+|++++.+.+-.--+..++.++
T Consensus 183 ~~st~ilvPvgliFvvFa~hfyrslVsHk~~ 213 (245)
T KOG4298|consen 183 YISTAILVPVGLIFVVFAIHFYRSLVSHKTE 213 (245)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Confidence 3444555556666555444444444444333
No 73
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=29.50 E-value=1.5e+02 Score=31.25 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=30.8
Q ss_pred ccchhhhHHHhhhhccccCCC---CcccchhhHHHHHHHHHH
Q psy13459 356 SIPAAFWYTIVTMTTLGYGDM---VPETIAGKIVGGVCSLSG 394 (542)
Q Consensus 356 s~~~a~y~a~vTltTVGYGDi---~p~t~~~~i~~~~~~i~g 394 (542)
++.++++=++..+.|||.+-- ..-++.+|++.++.|+.|
T Consensus 348 ~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 348 DFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred CHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 788899988999999986432 345778999998888876
No 74
>KOG2243|consensus
Probab=28.48 E-value=1.7e+02 Score=35.67 Aligned_cols=117 Identities=16% Similarity=0.238 Sum_probs=58.3
Q ss_pred HHHHhhhhccchhhhhhhhhccchhhHHHHHHHHHHHHHHHHHhhhhcc--------CC-CCCCCCccchhhhHHH-h-h
Q psy13459 299 RIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEK--------NV-DGTNFTSIPAAFWYTI-V-T 367 (542)
Q Consensus 299 Rilkl~r~~~~l~~l~~~l~~s~~~l~~ll~~l~~~i~ifa~l~~~~e~--------~~-~~~~f~s~~~a~y~a~-v-T 367 (542)
.++-+.-.++.+|.+..++...-+++...+-++.+.+++|..+.+-+.+ ++ ++-.-+....+..|-+ + .
T Consensus 4794 hlldiamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~pdmkcddmltcylfhmyvgv 4873 (5019)
T KOG2243|consen 4794 HLLDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMLTCYLFHMYVGV 4873 (5019)
T ss_pred HHHHHHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCCCccchhhHHHHhhheeeee
Confidence 4444444555566666555555566665555666666777665443322 11 1122233333322211 1 1
Q ss_pred hhccccCCCC--cccch---hh-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 368 MTTLGYGDMV--PETIA---GK-IV-GGVCSLSGVLVIALPVPVIVSNFSRIYHQ 415 (542)
Q Consensus 368 ltTVGYGDi~--p~t~~---~~-i~-~~~~~i~g~~~~al~i~~i~~~f~~~~~~ 415 (542)
=.+-|-||-. |.+.. .| +| +.+++++-+++++++-|.|++.|.+...+
T Consensus 4874 ragggigdeiedpagd~yeiyriifditffffvivillaiiqgliidafgelrdq 4928 (5019)
T KOG2243|consen 4874 RAGGGIGDEIEDPAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQ 4928 (5019)
T ss_pred ecCCcccccccCCCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhH
Confidence 1334566643 33221 12 23 33444455677788889999998875433
No 75
>KOG3599|consensus
Probab=26.84 E-value=7.1e+02 Score=29.18 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhC
Q psy13459 225 YKIVFFCLDTACVMIFTAEYLLRLFAA 251 (542)
Q Consensus 225 ~~~~l~~~e~v~~~iF~~E~~lr~~~a 251 (542)
....+.++|.++.++.++-+++..+..
T Consensus 496 ~~s~wN~ld~~i~~ls~~~~~~~~~r~ 522 (798)
T KOG3599|consen 496 VRSKWNWLDLAIVLLSVVLLVLMITRT 522 (798)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888777777766544
No 76
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=26.02 E-value=5.6e+02 Score=27.25 Aligned_cols=9 Identities=11% Similarity=0.228 Sum_probs=5.2
Q ss_pred eCCeEEEee
Q psy13459 47 VSGRRFETW 55 (542)
Q Consensus 47 VgG~~f~t~ 55 (542)
||+-|...-
T Consensus 45 lG~~RlRQ~ 53 (425)
T PF08016_consen 45 LGPPRLRQL 53 (425)
T ss_pred ecccEEEEE
Confidence 566666543
No 77
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=25.86 E-value=3.7e+02 Score=21.92 Aligned_cols=9 Identities=11% Similarity=0.205 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q psy13459 399 ALPVPVIVS 407 (542)
Q Consensus 399 al~i~~i~~ 407 (542)
.+|+-.+..
T Consensus 50 ~lFi~ll~~ 58 (84)
T PF06143_consen 50 VLFILLLYN 58 (84)
T ss_pred HHHHHHHHH
Confidence 444444433
No 78
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=25.63 E-value=61 Score=27.27 Aligned_cols=59 Identities=27% Similarity=0.385 Sum_probs=43.3
Q ss_pred CCceEEEEeCC--eEEEeeHHHHhcCC--CCccccCCCCCccCCCCceEEEecCCcchHHhhccc
Q psy13459 39 DDEKLLINVSG--RRFETWRNTLEKYP--DSLLGSNEREFFYDEDSKEYFFDRDPDIFRHILNYY 99 (542)
Q Consensus 39 ~~~~v~lNVgG--~~f~t~~~tl~~~p--~t~l~~~~~~~~~~~~~~~~f~DRd~~~F~~Il~~~ 99 (542)
+..-+.+-||. +||....+-|.. | ..+|...+.+..|+. +|.+.|..|...|++||..+
T Consensus 37 p~G~~~VyVG~~~~Rfvvp~~~L~h-p~f~~LL~~aeeEfG~~~-~G~l~iPC~~~~Fe~~l~~l 99 (100)
T PF02519_consen 37 PKGHFAVYVGEERRRFVVPVSYLNH-PLFQELLEQAEEEFGFDQ-DGPLTIPCDVVLFEHLLWLL 99 (100)
T ss_pred CCCeEEEEeCccceEEEechHHcCc-hhHHHHHHHHhhhcCcCC-CCcEEeeCCHHHHHHHHHHh
Confidence 35578899986 889998887754 2 233433455555666 88899999999999999765
No 79
>KOG3643|consensus
Probab=25.17 E-value=1.1e+02 Score=32.50 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=32.0
Q ss_pred HHHhhhhc--cccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 363 YTIVTMTT--LGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFS 410 (542)
Q Consensus 363 ~a~vTltT--VGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~~f~ 410 (542)
.++.|||| .|+.+.-|....-|.+=+.+.+|=+++|+..+-...-++.
T Consensus 280 TTVLTMTTl~t~~n~slPrvSYVKAiDiYL~vCFvfVF~sLLEYA~V~Y~ 329 (459)
T KOG3643|consen 280 TTVLTMTTLMTSTNESLPRVSYVKAIDVYLGVCFVFVFLSLLEYAAVNYM 329 (459)
T ss_pred ehHHhHHHHHhhhhccCCCccceeeehhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45778888 4777888988877766666666666666555554444444
No 80
>KOG0783|consensus
Probab=25.02 E-value=27 Score=39.93 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=42.1
Q ss_pred eEEEEeCCeEEEeeHHHHhcCCCCccccC--------CCCCcc----CCCCceEEE-ecCCcchHHhhcccccCcccCC
Q psy13459 42 KLLINVSGRRFETWRNTLEKYPDSLLGSN--------EREFFY----DEDSKEYFF-DRDPDIFRHILNYYRTGKLHYP 107 (542)
Q Consensus 42 ~v~lNVgG~~f~t~~~tl~~~p~t~l~~~--------~~~~~~----~~~~~~~f~-DRd~~~F~~Il~~~r~g~l~~p 107 (542)
-|++-|||..|...+-.|.... ++|-.+ +....| +.....+|+ |=.|.+|+++|+|+.|..+--|
T Consensus 560 DVtf~vg~~~F~aHKfIl~~rs-~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P 637 (1267)
T KOG0783|consen 560 DVTFYVGTSMFHAHKFILCARS-SFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTLLSP 637 (1267)
T ss_pred eEEEEecCeecccceEEEEecc-HHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccccCC
Confidence 6899999999997766555432 122211 111222 223445666 6689999999999999876556
No 81
>COG4325 Predicted membrane protein [Function unknown]
Probab=24.90 E-value=8.5e+02 Score=25.82 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=17.6
Q ss_pred CccchhhhHHHhhhhccc-----cCCCCcccc
Q psy13459 355 TSIPAAFWYTIVTMTTLG-----YGDMVPETI 381 (542)
Q Consensus 355 ~s~~~a~y~a~vTltTVG-----YGDi~p~t~ 381 (542)
.+|.-+|-|++.-++||| ||..+|.-.
T Consensus 131 a~FlctFvysl~vlrtvg~e~d~~g~FIp~~a 162 (464)
T COG4325 131 AIFLCTFVYSLGVLRTVGEERDGQGAFIPKVA 162 (464)
T ss_pred HHHHHHHHHHHHHHHHhhhccCccccceehHH
Confidence 456666777777777764 566677543
No 82
>COG1584 Predicted membrane protein [Function unknown]
Probab=23.65 E-value=6.2e+02 Score=24.10 Aligned_cols=73 Identities=22% Similarity=0.384 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhhccC-CCCCCCCccchhhhHHHhhhhcc---ccCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13459 334 AIIIFATVMFYAEKN-VDGTNFTSIPAAFWYTIVTMTTL---GYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVS 407 (542)
Q Consensus 334 ~i~ifa~l~~~~e~~-~~~~~f~s~~~a~y~a~vTltTV---GYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~~i~~ 407 (542)
+.-++|.++-+.-++ -..+-|.|| -+|||+.+-+... |.-+..+.++....++...++-|++-+.++++.+-+
T Consensus 63 laQl~AGi~e~k~GnTFG~TAF~Sy-G~FW~s~a~~~~~~~~g~~~~~~~~~~~~aig~yL~~WgiFT~~M~~~Tlk~ 139 (207)
T COG1584 63 LAQLFAGILEYKKGNTFGGTAFTSY-GLFWLSLALILLMPKLGILGYLDPAPLANALGWYLILWGIFTLLMFIGTLKS 139 (207)
T ss_pred HHHHHHHHHHHHhcCcccchHHhhc-cHHHHHHHHHHHhhhcCccccccCCchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566655443222 233556666 5788887766553 433333445555666666666676666666665544
No 83
>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex
Probab=23.37 E-value=21 Score=34.84 Aligned_cols=28 Identities=25% Similarity=0.229 Sum_probs=24.3
Q ss_pred CchhhHHHHHHHhhhcCCCCchhHHHHHHHHHHHH
Q psy13459 161 LPQLTNIRQKMWRAFENPHTSTAALVFYYVTGFFI 195 (542)
Q Consensus 161 ~~~~~~~r~~l~~~le~P~ss~~a~~f~~~~~~lI 195 (542)
...|.++|+.+++++|+ .||..+|+++|
T Consensus 212 g~~W~~~R~~c~~iVeh-------~~FEtfIifmI 239 (239)
T PF06512_consen 212 GKIWWNLRKTCYRIVEH-------KWFETFIIFMI 239 (239)
T ss_pred chhHHHHHhhheeeecc-------cchhheeeeeC
Confidence 35688999999999999 79999988876
No 84
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=23.34 E-value=4.8e+02 Score=28.08 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy13459 389 VCSLSGVLVIALPVPVIVSNFS 410 (542)
Q Consensus 389 ~~~i~g~~~~al~i~~i~~~f~ 410 (542)
++++.|.++.++|...+-....
T Consensus 173 ~i~~~g~Glv~iP~~l~~~~~~ 194 (471)
T PF04791_consen 173 FIILLGYGLVAIPRDLWRSSNS 194 (471)
T ss_pred HHHHHhccHHHHHHHHHHhccc
Confidence 4556788899999888876554
No 85
>KOG1608|consensus
Probab=23.21 E-value=8e+02 Score=24.95 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=10.5
Q ss_pred HHHhhhhccccCCCCc
Q psy13459 363 YTIVTMTTLGYGDMVP 378 (542)
Q Consensus 363 ~a~vTltTVGYGDi~p 378 (542)
..++...|+|||=-..
T Consensus 264 tliiaVlt~gfgla~~ 279 (374)
T KOG1608|consen 264 TLIIAVLTVGFGLAGA 279 (374)
T ss_pred HHHHHHHHHHhhhccc
Confidence 3455667899986543
No 86
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=22.98 E-value=6.3e+02 Score=23.61 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=38.8
Q ss_pred CccchhhhHHHhhhhccccCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy13459 355 TSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVP 403 (542)
Q Consensus 355 ~s~~~a~y~a~vTltTVGYGDi~p~t~~~~i~~~~~~i~g~~~~al~i~ 403 (542)
.+|.|=+|++++.-||-+-.|+.+.+..-|-.+..=.++++++-+.+++
T Consensus 131 P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 131 PDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788889999999999888999999888887777776766666555443
No 87
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=21.82 E-value=32 Score=28.07 Aligned_cols=19 Identities=37% Similarity=0.660 Sum_probs=16.2
Q ss_pred EecCCcchHHhhcccccCc
Q psy13459 85 FDRDPDIFRHILNYYRTGK 103 (542)
Q Consensus 85 ~DRd~~~F~~Il~~~r~g~ 103 (542)
+.=||++|+.||+.+|.+.
T Consensus 39 v~~dp~VFriildLL~~nV 57 (88)
T PF12926_consen 39 VPMDPEVFRIILDLLRLNV 57 (88)
T ss_pred CCcChHHHHHHHHHHHcCC
Confidence 3459999999999999875
Done!