RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13459
(542 letters)
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 485 bits (1249), Expect = e-168
Identities = 157/483 (32%), Positives = 251/483 (51%), Gaps = 47/483 (9%)
Query: 4 VAAWLPFARAAAIGWVPIATHPLPPPPIPKDRRKADDEKLLINVSGRRFETWRNTLEKYP 63
VA P AAA+ P T+ E+++IN+SG RFET TL ++P
Sbjct: 22 VATGDPVDEAAALPGHPQDTYDPEA-------DHESSERVVINISGLRFETQLKTLAQFP 74
Query: 64 DSLLGS-NEREFFYDEDSKEYFFDRDPDIFRHILNYYRTG-KLHYPKHECLTSYDEELAF 121
++LLG +R ++D EYFFDR+ F IL YY++G +L P + L + EE+ F
Sbjct: 75 ETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRF 134
Query: 122 FGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLPQLTNIRQKMWRAFENPHTS 181
+ + + + ++ ++ E L EN ++++W FE P +S
Sbjct: 135 YELGEEAMEMFREDEGYIKEEE-------RPLPEN---------EFQRQVWLLFEYPESS 178
Query: 182 TAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAG---------------SLPCGERYK 226
A + V+ I +S+++ +ET+P +
Sbjct: 179 GPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFT 238
Query: 227 IVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDND--- 283
FF ++T C++ F+ E+L+R FA P + F ++M+IID+VAI+PYY+ + +T+++
Sbjct: 239 DPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSV 298
Query: 284 ----DVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFA 339
+V R+ R+ RIFK SRHS+GL+ILG TLK+ ELG L+F L + +I+F+
Sbjct: 299 LQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFS 358
Query: 340 TVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIA 399
+ +++AE + + F SIP AFW+ +V+MTT+GYGDMVP TI GKIVG +C+++GVL IA
Sbjct: 359 SAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIA 418
Query: 400 LPVPVIVSNFSRIYHQNQRADKRKAQRDREFVELEVPYNGQAKRPGSPSPLLSPSHSVIS 459
LPVPVIVSNF+ YH+ +++ K + + S +
Sbjct: 419 LPVPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIPSSPDLKKSRSASTISKSDYMEIQE 478
Query: 460 TAN 462
N
Sbjct: 479 GVN 481
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 292 bits (750), Expect = 3e-95
Identities = 45/253 (17%), Positives = 92/253 (36%), Gaps = 18/253 (7%)
Query: 180 TSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMI 239
++ + A ++A T+P R ++ L
Sbjct: 3 VLPFLRIYAPLNAVLAAPGLLAVAALTIP-----------DMSGRSRLALAALLAVIWGA 51
Query: 240 FTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFR 299
+ + L R+ IDV+A+L + + D ++
Sbjct: 52 YLLQLAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAFLLDGSPD-------WSLYCAVW 104
Query: 300 IFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPA 359
+ K R S +LG L + A L + + + A + E+++ F SIP
Sbjct: 105 LLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQ 164
Query: 360 AFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRA 419
A W+ +VT++T GYGD +P++ AG+++ G +SG+ + L ++ + F + +
Sbjct: 165 AMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRGDFV 224
Query: 420 DKRKAQRDREFVE 432
+ +
Sbjct: 225 RNWQLVAAVPLFQ 237
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 267 bits (685), Expect = 3e-87
Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 186 VFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIFTAEYL 245
+ + +SV+ VVE Y + + +D V+I A+Y
Sbjct: 9 LVELGVSYAALLSVIVVVVECTM-----------QLSGEYLVRLYLVDLILVIILWADYA 57
Query: 246 LRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSR 305
R + + D +V+ ++ ++ A++P + I + G F +R+ R RI
Sbjct: 58 YRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLII- 114
Query: 306 HSQGLRILGYTLKSCASELGFLVFSLAMAIIIF-ATVMFYAEKNVDGTNFTSIPAAFWYT 364
S+G + L + + +F M +++ A ++ E ++ S+ A W+
Sbjct: 115 -SRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWA 173
Query: 365 IVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIY 413
+VT TT+GYGD+VP T GK++G L+G+ + L + + + F +I
Sbjct: 174 VVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKIL 222
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1,
membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Length = 140
Score = 217 bits (554), Expect = 6e-69
Identities = 99/142 (69%), Positives = 128/142 (90%), Gaps = 2/142 (1%)
Query: 5 AAWLPFARAAAIGWVPIATHPLPPPPIPKDRRKADDEKLLINVSGRRFETWRNTLEKYPD 64
AAWLPFARAAAIGW+P+A P+P P D+ K DE +++NVSGRRF+TWR TLE+YPD
Sbjct: 1 AAWLPFARAAAIGWMPVANCPMPLAPA--DKNKRQDELIVLNVSGRRFQTWRTTLERYPD 58
Query: 65 SLLGSNEREFFYDEDSKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAFFGI 124
+LLGS E+EFF++ED+KEYFFDRDP++FR +LN+YRTGKLHYP++EC+++YD+ELAF+GI
Sbjct: 59 TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGI 118
Query: 125 LPDVIGDCCYEDYRDRKRENAE 146
LP++IGDCCYE+Y+DRKRENAE
Sbjct: 119 LPEIIGDCCYEEYKDRKRENAE 140
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 180 bits (457), Expect = 2e-54
Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 25/179 (13%)
Query: 248 LFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHS 307
+ + + ++ +P ++ + R+ ++ RH
Sbjct: 1 MSGSHHHHHHSSGIEGRGRLIKHMP---------------PMLSGLLARLVKLL-LGRHG 44
Query: 308 QGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVT 367
L G L + ++ + + AE+ G S P A W+++ T
Sbjct: 45 SALH---------WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVET 95
Query: 368 MTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQR 426
TT+GYGD+ P T+ G+ V V ++G+ L + + F + + R +++
Sbjct: 96 ATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHFVRHSEK 154
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels,
tetramerization domain, T1 domain, transport PR; 2.60A
{Homo sapiens} SCOP: d.42.1.2
Length = 124
Score = 177 bits (451), Expect = 6e-54
Identities = 80/116 (68%), Positives = 106/116 (91%)
Query: 32 PKDRRKADDEKLLINVSGRRFETWRNTLEKYPDSLLGSNEREFFYDEDSKEYFFDRDPDI 91
P D+ K DE +++NVSGRRF+TWR TLE+YPD+LLGS E+EFF++ED+KEYFFDRDP++
Sbjct: 4 PADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFFDRDPEV 63
Query: 92 FRHILNYYRTGKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRKRENAER 147
FR +LN+YRTGKLHYP++EC+++YD+ELAF+GILP++IGDCCYE+Y+DRKREN E
Sbjct: 64 FRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYKDRKRENLEH 119
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 175 bits (445), Expect = 2e-52
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 10/142 (7%)
Query: 288 AFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEK 347
++ + R+ ++ RH L+ G L + ++ + + AE+
Sbjct: 9 PMLSGLLARLVKLL-LGRHGSALQ---------WRAAGAATVLLVIVLLAGSYLAVLAER 58
Query: 348 NVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVS 407
G + P A W+++ T TT+GYGD+ P T+ G++V V ++G+ L + +
Sbjct: 59 GAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALAT 118
Query: 408 NFSRIYHQNQRADKRKAQRDRE 429
F Q Q+ R +++ E
Sbjct: 119 WFVGQEQQQQQQFVRHSEKAAE 140
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 170 bits (432), Expect = 3e-51
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 10/129 (7%)
Query: 289 FVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKN 348
++ + R+ ++ RH L G L + ++ + + AE+
Sbjct: 4 MLSGLLARLVKLL-LGRHGSALH---------WRAAGAATVLLVIVLLAGSYLAVLAERG 53
Query: 349 VDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSN 408
G + P A W+ T TT+ YGD+ P T+ G++V V ++G+ L + +
Sbjct: 54 APGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATW 113
Query: 409 FSRIYHQNQ 417
F + +
Sbjct: 114 FVGREQERR 122
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated
potassium channel SHAL, membrane protein; 2.10A {Rattus
norvegicus} SCOP: d.42.1.2
Length = 105
Score = 169 bits (429), Expect = 4e-51
Identities = 75/102 (73%), Positives = 99/102 (97%)
Query: 45 INVSGRRFETWRNTLEKYPDSLLGSNEREFFYDEDSKEYFFDRDPDIFRHILNYYRTGKL 104
+NVSG RF+TW++TLE+YPD+LLGS+ER+FFY ++++YFFDRDPDIFRHILN+YRTGKL
Sbjct: 4 LNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKL 63
Query: 105 HYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRKRENAE 146
HYP+HEC+++YDEELAFFG++P++IGDCCYE+Y+DR+RENAE
Sbjct: 64 HYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRENAE 105
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular
recogni zinc-binding; 2.00A {Aplysia californica} SCOP:
d.42.1.2
Length = 115
Score = 152 bits (387), Expect = 8e-45
Identities = 45/110 (40%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Query: 40 DEKLLINVSGRRFETWRNTLEKYPDSLLGS-NEREFFYDEDSKEYFFDRDPDIFRHILNY 98
+ +++INV G R ET++ TL+K P + L E YD EYFFDR P +F I+NY
Sbjct: 4 ENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINY 63
Query: 99 YRTGKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRKRENAERL 148
YR+GKLHYP C ++EEL F+G+ + + CC+ Y + + E L
Sbjct: 64 YRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTAHR-DTQETL 112
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 153 bits (388), Expect = 1e-44
Identities = 25/107 (23%), Positives = 50/107 (46%)
Query: 323 ELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIA 382
G L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+
Sbjct: 7 AAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLW 66
Query: 383 GKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRDRE 429
G++V V ++G+ L + + F + + R +++ E
Sbjct: 67 GRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAE 113
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 132 bits (334), Expect = 2e-37
Identities = 26/96 (27%), Positives = 41/96 (42%)
Query: 323 ELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIA 382
E L + + AE+ G S P A W+++ T TT+GYGD P T
Sbjct: 7 EAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEE 66
Query: 383 GKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQR 418
G+ V +G+ V AL + ++F R + +
Sbjct: 67 GRKVAEQVMKAGIEVFALVTAALATDFVRREEERRG 102
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium
channel domain T1, pentameric assembly, HOST-virus
interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Length = 202
Score = 134 bits (339), Expect = 6e-37
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 8/145 (5%)
Query: 35 RRKADDEKLLINVSGRRFETWRNTLEKYPDSLLG---SNEREFFYDEDSK-EYFFDRDPD 90
R + + + +NV G F T R TL + P S L + + D+D Y DRDP
Sbjct: 6 RPGSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPT 65
Query: 91 IFRHILNYYRTGKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRKRENAERLMD 150
F +LNY R GKL K EE F+ I + + R+R + ++ +
Sbjct: 66 YFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLI--KLVKDKIRERDSKTSQVPVK 123
Query: 151 D--KLSENGDQNLPQLTNIRQKMWR 173
++ + ++ L Q+ + W+
Sbjct: 124 HVYRVLQCQEEELTQMVSTMSDGWK 148
>1t1d_A Protein (potassium channel KV1.1); potassium channels,
tetramerization domain, aplysia KV1.1, proton transport,
membrane protein; 1.51A {Aplysia californica} SCOP:
d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E*
1qdw_A 1dsx_A
Length = 100
Score = 127 bits (321), Expect = 1e-35
Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 7/103 (6%)
Query: 41 EKLLINVSGRRFETWRNTLEKYPDSLLGS-NEREFFYDEDSKEYFFDRDPDIFRHILNYY 99
E+++INVSG RFET TL ++PD+LLG+ +R +YD EYFFDR+ F IL +Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 100 RT-GKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRK 141
++ G+L P + L + EE+ F+ +G+ +E YR+ +
Sbjct: 61 QSGGRLRRPVNVPLDVFSEEIKFYE-----LGENAFERYREDE 98
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain
T1, pentamer, unkno function; 1.90A {Homo sapiens}
Length = 107
Score = 127 bits (320), Expect = 3e-35
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Query: 37 KADDEKLLINVSGRRFETWRNTLEKYPDSLLG----SNEREFFYDEDSKEYFFDRDPDIF 92
+ + + +NV G F T R TL + P S L ++ +++ Y DRDP F
Sbjct: 2 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYF 61
Query: 93 RHILNYYRTGKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDR 140
+LNY R GKL K EE F+ I + + R+R
Sbjct: 62 GPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLI--KLVKDKIRER 107
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 99.8 bits (248), Expect = 3e-23
Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 2/131 (1%)
Query: 295 FRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAII--IFATVMFYAEKNVDGT 352
V S S+ L L TL F+ ++ ++ FAT+ +
Sbjct: 15 CNVQHGNLGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQ 74
Query: 353 NFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRI 412
AF++++ T+ T+GYGDM P+T+ + + G+ IAL S+
Sbjct: 75 FPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134
Query: 413 YHQNQRADKRK 423
+ + +
Sbjct: 135 KKRAETLMFSE 145
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 96.8 bits (240), Expect = 4e-22
Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 3/136 (2%)
Query: 298 FRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLA--MAIIIFATVMFYAEKNVDGTNFT 355
+ + + R L Y + + F + + +FA + + + +
Sbjct: 36 REVIAYGMPASVWRDLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPP 95
Query: 356 SIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQ 415
AF++++ T+ T+GYGDM P+T+ + + G+ IAL ++ + F+R +
Sbjct: 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK 155
Query: 416 NQRADK-RKAQRDREF 430
A +
Sbjct: 156 IMFARHAIVRPFNGRM 171
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 90.5 bits (224), Expect = 3e-20
Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 305 RHSQGLRILGYTLKSCASELGFLVFSLA--MAIIIFATVMFYAEKNVDGTNFTSIPAAFW 362
L + L + + + + + + +FA ++ S AF+
Sbjct: 29 EKRGWLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFF 88
Query: 363 YTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADK 421
+++ TM T+GYG ++P + + +L G+L +A+ +I + F+R + +
Sbjct: 89 FSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAGVLFSSR 147
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane
protein; NMR {Aeropyrum pernix}
Length = 147
Score = 86.5 bits (214), Expect = 3e-20
Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 20/145 (13%)
Query: 159 QNLPQLTNIRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGS 218
+ L L + + E+P + + +SV+ VVE
Sbjct: 2 RGLSDLGGRVRNIGDVMEHP-------LVELGVSYAALLSVIVVVVEYT----------- 43
Query: 219 LPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLG 278
+ Y + + +D V+I A+Y R + + D +V+ ++ ++ A++P +
Sbjct: 44 MQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLAL 101
Query: 279 ITDNDDVSGAFVTLRVFRVFRIFKF 303
I + G F +R+ R RI
Sbjct: 102 IEGHLAGLGLFRLVRLLRFLRILLI 126
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB
complex, membrane protein; 1.90A {Aeropyrum pernix}
SCOP: f.14.1.1
Length = 132
Score = 85.8 bits (212), Expect = 4e-20
Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 13/118 (11%)
Query: 186 VFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIFTAEYL 245
+ + +SV+ VVE + Y + + +D V+I A+Y
Sbjct: 7 LVELGVSYAALLSVIVVVVEYT-----------MQLSGEYLVRLYLVDLILVIILWADYA 55
Query: 246 LRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKF 303
R + + D +V+ ++ ++ A++P + I + G F +R+ R RI
Sbjct: 56 YRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLI 111
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 73.5 bits (181), Expect = 1e-16
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 326 FLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
+ L +A+II+ T F+ + S + ++T VT+ T+GYGD P T G
Sbjct: 4 TRILLLVLAVIIYGTAGFHFIEG------ESWTVSLYWTFVTIATVGYGDYSPHTPLGMY 57
Query: 386 VGGVCSLSGVLVIALPVPVIVSNF 409
+ G+ A+ V ++
Sbjct: 58 FTCTLIVLGIGTFAVAVERLLEFL 81
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 79.0 bits (195), Expect = 2e-16
Identities = 49/298 (16%), Positives = 108/298 (36%), Gaps = 44/298 (14%)
Query: 149 MDDKLSENGDQNLPQLTNIRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVP 208
MD K ++ +P+ +++ ++ E+ F + I ++ + +ET
Sbjct: 1 MDYKDDDDKGSLVPRGSHMYLRITNIVESS-------FFTKFIIYLIVLNGITMGLETSK 53
Query: 209 CGHRPGRAGSLPCGERYKIVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIID-- 266
+ + + + + IFT E +LR++ R F + S+ D
Sbjct: 54 -----------TFMQSFGVYTTLFNQIVITIFTIEIILRIYV--HRISFFKDPWSLFDFF 100
Query: 267 --VVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASEL 324
++++P S F LRV RV R+F+ +R + L S +
Sbjct: 101 VVAISLVP------------TSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGM 148
Query: 325 GFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLG--YGDMVPETIA 382
++ + + IFA + F ++ +F YT+ + TL +V +
Sbjct: 149 LSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESF-YTLFQVMTLESWSMGIVRPLME 207
Query: 383 GKIVGGV--CS---LSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRDREFVELEV 435
V + ++I L V + V + + + ++ + Q + + E+
Sbjct: 208 VYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQHIIDEVQSHEDNINNEI 265
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 73.1 bits (179), Expect = 1e-15
Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 14/142 (9%)
Query: 293 RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGT 352
+ K R+L L++ + ++F L + T+ + +
Sbjct: 3 SMLSFILTLK--------RMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEG---- 50
Query: 353 NFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRI 412
A ++++VT+TT+G G+ P+T GK+ + G+ ++ + + N
Sbjct: 51 --LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLP 108
Query: 413 YHQNQRADKRKAQRDREFVELE 434
+ R + A R +LE
Sbjct: 109 SILSNRKKETDAYRLEVMEKLE 130
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium
channel, sodium selective, gated ION channel; HET: BNG
PX4; 3.05A {Alpha proteobacterium HIMB114}
Length = 229
Score = 75.0 bits (185), Expect = 1e-15
Identities = 36/250 (14%), Positives = 82/250 (32%), Gaps = 30/250 (12%)
Query: 167 IRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYK 226
+ +N F + I ++ + T L +
Sbjct: 1 MTPFFSSLKDNRI-------FQFTVVSIIILNAVLIGATTYE----------LD--PLFL 41
Query: 227 IVFFCLDTACVMIFTAEYLLRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVS 286
LD + F E L+R + F +S +I D V + I + +
Sbjct: 42 ETIHLLDYGITIFFVIEILIRFIGEKQKADFFKSGWNIFDTVIVAISLIPIPN------N 95
Query: 287 GAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAE 346
+F+ LR+ R+FR+ + L+ + + + F+ L + + I+AT+
Sbjct: 96 SSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILF 155
Query: 347 KNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGV--CS---LSGVLVIALP 401
N D + + + + +T + ++ V S + + ++ L
Sbjct: 156 GNDDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLV 215
Query: 402 VPVIVSNFSR 411
+ ++V +
Sbjct: 216 IAILVDVVIQ 225
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 77.1 bits (190), Expect = 1e-15
Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 6/118 (5%)
Query: 310 LRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMT 369
+ I+ L + L +A+II+ T F+ ++G ++T + ++T VT+
Sbjct: 5 IEIIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHF---IEGESWTV---SLYWTFVTIA 58
Query: 370 TLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRD 427
T+GYGD P T G + G+ A+ V ++ A+
Sbjct: 59 TVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLIDVAKSR 116
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 66.8 bits (163), Expect = 9e-14
Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 303 FSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFW 362
S R+L L++ + ++F L + +I T+ + + A +
Sbjct: 2 LSFLLTLKRMLRACLRAWKDKEFQVLFVLTILTLISGTIFYSTVEG------LRPIDALY 55
Query: 363 YTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNF 409
+++VT+TT+G G+ P+T GKI + G+ ++ + + N
Sbjct: 56 FSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNV 102
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 65.6 bits (160), Expect = 1e-13
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 327 LVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKIV 386
++F L + +I T+ + + A ++++VT+TT+GYGD P+T GKI
Sbjct: 9 VLFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIF 62
Query: 387 GGVCSLSGVLVIALPVPVIVSNF 409
+ G+ ++ + + N
Sbjct: 63 TILYIFIGIGLVFGFIHKLAVNV 85
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.0 bits (163), Expect = 1e-11
Identities = 94/527 (17%), Positives = 162/527 (30%), Gaps = 196/527 (37%)
Query: 19 VPIATHP------------LPPPPIPKDRRKADDE-----KLLINVSGRRF------ETW 55
VP A+ LP P + ADDE +L+ +F
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPT---EGFAADDEPTTPAELVG-----KFLGYVSSLVE 73
Query: 56 RNTLEKYPDSL---LGSNEREFFYDED----SKEYFFDRDPDIFRH---ILNYYR---TG 102
+ + ++ L L E + D + + + D + + I NY
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 103 KLHYPKHEC---LTSYDEE----LAFFGILPDVIG----DCC-------YEDYRDRKRE- 143
K + K + E +A FG G D Y+ Y +
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFG------GQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 144 ---NAERLMD-DKLSENGDQNLPQLTNIRQKMWRAFENPHT--STAALVFYYVTGFFIAV 197
+AE L + + + + ++ Q NI + W ENP L+ ++ I V
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILE--W--LENPSNTPDKDYLLSIPISCPLIGV 243
Query: 198 SVMANVVETVPC---GHRPGR-----AGSLPCGERYKIVFFCLDTACVMIFTAEYLLRLF 249
+A+ V V G PG G+ + +V TA + A
Sbjct: 244 IQLAHYV--VTAKLLGFTPGELRSYLKGATGHSQ--GLV-----TA---VAIA------- 284
Query: 250 AAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFS----- 304
F SV I V+ ++IG +R + +
Sbjct: 285 ETDSWESFFVSVRKAITVL----FFIG---------------VRCYEAYPNTSLPPSILE 325
Query: 305 ---RHSQG-----LRILGYTLKSCASELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTS 356
+++G L I T + ++ + V+ TN +
Sbjct: 326 DSLENNEGVPSPMLSISNLTQE----QV---------------------QDYVNKTN-SH 359
Query: 357 IPAAFWYTIVTMTTL--GYGDMVPETIAGKIVGGVCSLSGVLVIAL---PVPVIVSNFSR 411
+PA I +L G ++V ++G SL G L + L P + SR
Sbjct: 360 LPAGKQVEI----SLVNGAKNLV---VSGPPQ----SLYG-LNLTLRKAKAPSGLDQ-SR 406
Query: 412 IYHQNQRADKRKAQRDREFVELEVPYNGQAKRPGSPSPLLSPSHSVI 458
I +RK + F+ + P++ S LL P+ +I
Sbjct: 407 IPF-----SERKLKFSNRFLPVASPFH---------SHLLVPASDLI 439
Score = 50.0 bits (119), Expect = 2e-06
Identities = 81/477 (16%), Positives = 139/477 (29%), Gaps = 158/477 (33%)
Query: 144 NAERLMDDKLSENGDQNLPQLTNIRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANV 203
A +L + LP+ T A ++ T+ A LV ++ G+ ++++
Sbjct: 29 IASQLQEQFNK-----ILPEPTEGF-----AADDEPTTPAELVGKFL-GY------VSSL 71
Query: 204 VETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIFTAEYL----LRLFAA---PDRCK 256
VE P + G +++ CL F YL + AA +
Sbjct: 72 VE-------PSKVGQFD-----QVLNLCLTE-----FENCYLEGNDIHALAAKLLQENDT 114
Query: 257 FVRSVMSIIDVVAILPYYIGLGITD---NDDVSGAF---VTLRVFRVFRIFKFSRHSQG- 309
+ +I Y + + + A V ++ IF QG
Sbjct: 115 TLVKTKELI-----KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG----GQGN 165
Query: 310 -------LRILGYT---------LKSCASELGFLVFSLAMAIIIFATVM------FYAEK 347
LR L Y +K A L L+ + A +F +
Sbjct: 166 TDDYFEELRDL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 348 NVDGTNFTSIPAAF---------WYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVI 398
D SIP + Y +VT LG+ P + + G G++
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHY-VVTAKLLGFT---PGELRSYLKGATGHSQGLVT- 279
Query: 399 ALPVPVIVS--NFSRIYHQ-----------NQRADKRKAQRD---REFVELEVPYNGQAK 442
A+ + S +F + A + + +E N +
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE-----NNE-- 332
Query: 443 RPGSPSPLLS--------------------PSHSVISTANIFQSCCGR----CCGQRYQK 478
G PSP+LS P+ + + + G G
Sbjct: 333 --GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV----NGAKNLVVSGPPQSL 386
Query: 479 ARLA-RIRIAKASSGAAFVSKKKAAEARMAAQESGLEIDENYREEDIFEIQHHHLLR 534
L +R AKA SG S+ +E ++ L + + H HLL
Sbjct: 387 YGLNLTLRKAKAPSG-LDQSRIPFSERKLKFSNRFLPVASPF---------HSHLLV 433
Score = 37.7 bits (87), Expect = 0.012
Identities = 42/235 (17%), Positives = 70/235 (29%), Gaps = 104/235 (44%)
Query: 68 GSNE----REFFYDEDS--KEYFFDR-DPDIFRHILNYYRTG------KLHYPKHECLTS 114
GS E + Y ++ ++R D H + Y G ++ P + LT
Sbjct: 1625 GSQEQGMGMDL-YKTSKAAQD-VWNRAD----NHFKDTY--GFSILDIVINNPVN--LTI 1674
Query: 115 YDEELAFFGILPDVIGDCCYEDYRDRKRENA--ERLMDDKLSENGDQNLPQLTNIRQKMW 172
+ F G I E+Y E +L +K+ + +++ T
Sbjct: 1675 H-----FGGEKGKRI----RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT------- 1718
Query: 173 RAFENPH---TSTA----ALV-----FYYV---TGFFIAVSVMANVVETVPCGHRPGRAG 217
F + ++T AL + G A + A GH
Sbjct: 1719 --FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA--------GH------ 1762
Query: 218 SLPCGERYKIVFFCLDTACVMIFTAEYLLRLFA-APDRCKFVRSVMSIIDVVAIL 271
SL GE + A L + A VMSI +V ++
Sbjct: 1763 SL--GE----------------YAA-----LASLA--------DVMSIESLVEVV 1786
Score = 34.6 bits (79), Expect = 0.090
Identities = 32/202 (15%), Positives = 63/202 (31%), Gaps = 69/202 (34%)
Query: 391 SLS-GVLVIALPVPVIVSNFSRIYHQNQRAD---KRKAQRDREF---------VELEVPY 437
+LS G L L VP ++F + +Q + K + F EL +
Sbjct: 10 TLSHGSLEHVLLVPT--ASF---FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 438 NG------QAKRPGSPSPLLSPS--------------HSVIST------------ANIFQ 465
G + + G +L+ H++ + + +
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 466 SCCGRCCGQRYQKARLARIRIAKASSGAAFVSKKKAAEARMAA----QESGLEIDENYRE 521
+ Y AR+ R S +A A++ A Q G ++Y E
Sbjct: 125 N---------YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ--G--NTDDYFE 171
Query: 522 E--DIFEIQHHHLLRCLEKTTN 541
E D+++ H + ++ +
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAE 193
>1s6c_B Potassium voltage-gated channel subfamily D membe; EF-hand,
transport protein; 2.00A {Rattus norvegicus}
Length = 30
Score = 57.9 bits (139), Expect = 1e-11
Identities = 21/28 (75%), Positives = 25/28 (89%)
Query: 2 ASVAAWLPFARAAAIGWVPIATHPLPPP 29
A VAAWLPFARAAAIGW+P+A+ P+P P
Sbjct: 3 AGVAAWLPFARAAAIGWMPVASGPMPAP 30
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 9e-07
Identities = 68/503 (13%), Positives = 131/503 (26%), Gaps = 170/503 (33%)
Query: 37 KADDEKLLI---NVSGRRFETWRNTLEKYPDSLLGSNEREFFYDEDSKEYFF-------- 85
K + + +++ VSG W TL + ++ ++F + Y F
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFW--TLLSKQEEMV----QKFVEEVLRINYKFLMSPIKTE 101
Query: 86 DRDPDIFRHILNYYRT---------GKLHYPKHE-------------------------- 110
R P + + R K + + +
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 111 ---CLT-----SYDEELAF-FGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQ-- 159
+ SY + F I + +C + + +D + D
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 160 NLPQLTN-IRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANV--VETVPCGHRPGRA 216
N+ + I+ ++ R ++ LV + NV + A
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLV-------------LLNVQNAKAW-------NA 261
Query: 217 GSLPC----GERYKIVFFCLDTACV---------MIFTAEYLLRLFAAPDRCKFVRSVMS 263
+L C R+K V L A M T + + L K++
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-----KYLD--CR 314
Query: 264 IID----VVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKS 319
D V+ P + + I +R + +H + L ++S
Sbjct: 315 PQDLPREVLTTNPRRLSI-I-------AES--IRDGLA--TWDNWKHVNCDK-LTTIIES 361
Query: 320 CASELGFLVF-SLAMAIIIFATVMFYAEKNVDGTNFTSIPAA----FWYTIVTMTTLGYG 374
+ L + + + +F + IP W
Sbjct: 362 SLNVLEPAEYRKMFDRLSVF-------PPSAH------IPTILLSLIW-----------F 397
Query: 375 DMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRD----REF 430
D++ + +V + S LV P +S K K + + R
Sbjct: 398 DVIKSDV-MVVVNKLHKYS--LVEKQPKESTIS-----IPSIYLELKVKLENEYALHRSI 449
Query: 431 VELEVPYNGQAKRPG---SPSPL 450
V+ YN P L
Sbjct: 450 VD---HYNIPKTFDSDDLIPPYL 469
Score = 39.1 bits (90), Expect = 0.004
Identities = 21/149 (14%), Positives = 49/149 (32%), Gaps = 40/149 (26%)
Query: 56 RNTLEKYPDSLLGSNEREFFYDEDSKE----YFF------------DRDPDIFRHI-LNY 98
R+ ++ Y + + F D+ YF+ +FR + L++
Sbjct: 447 RSIVDHY------NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 99 -YRTGKLHYPKHECLTSYDEELAFFGILPDVIGDC-CYEDYRDRKRENAERLMDD--KLS 154
+ K+ +H+ G + + + Y+ Y ERL++
Sbjct: 501 RFLEQKI---RHDSTA-----WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 155 ENGDQNL--PQLTNIRQKMWRAFENPHTS 181
++NL + T++ + A +
Sbjct: 553 PKIEENLICSKYTDLLR---IALMAEDEA 578
Score = 36.8 bits (84), Expect = 0.020
Identities = 51/302 (16%), Positives = 88/302 (29%), Gaps = 100/302 (33%)
Query: 52 FETWRNTLEKYPDSLLGSNEREFFYDEDSKEYFFDRDPDIFRHILNYYRTGKLHYPKHEC 111
FET + +Y D +L E F + D K+ D+ + IL+ K E
Sbjct: 9 FETGEHQY-QYKD-ILSVFEDAFVDNFDCKDV-----QDMPKSILS----------KEEI 51
Query: 112 ---LTSYDEELA---FFGILPDVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLPQLT 165
+ S D F L ++ E ++ +++ L N L
Sbjct: 52 DHIIMSKDAVSGTLRLFWTL------------LSKQEEMVQKFVEEVL----RINYKFL- 94
Query: 166 NIRQKMWRAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGH--RP---------- 213
+ + + Y+ + N + + R
Sbjct: 95 ------MSPIKTEQRQPSMMTRMYIE----QRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 214 ------------GRAGSLPCGERYKIVF---FCLDTA--CVMIFTAEYL-LRLFAAPDRC 255
G G G K CL C M F +L L+ C
Sbjct: 145 LELRPAKNVLIDGVLG---SG---KTWVALDVCLSYKVQCKMDFKIFWLNLK------NC 192
Query: 256 KFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRV----FRVFRIFKFSRHSQGLR 311
S ++++++ L Y I T D S + LR+ + R+ K + L
Sbjct: 193 ---NSPETVLEMLQKLLYQIDPNWTSRSDHSSN-IKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 312 IL 313
+L
Sbjct: 249 VL 250
Score = 34.8 bits (79), Expect = 0.077
Identities = 49/374 (13%), Positives = 98/374 (26%), Gaps = 122/374 (32%)
Query: 25 PLPPPPIPKDRRKADDEKLLINVSGRRFETWRNTLEKYPDSLLGSNEREFFYDE--DSKE 82
I E RR + Y + LL ++K
Sbjct: 217 SDHSSNIKLRIHSIQAEL-------RRLLKSK----PYENCLL-------VLLNVQNAKA 258
Query: 83 Y-FFD---------RDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAFF---------- 122
+ F+ R + + T LT DE +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQD 317
Query: 123 ------GILP---DVIGDCCYEDYRDRKRENAERLMDDKLSENGDQNLPQLT-NIRQKMW 172
P +I + D +N + + DKL+ + +L L +KM+
Sbjct: 318 LPREVLTTNPRRLSIIAESI-RDGLAT-WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 173 RAFENPHTSTAALVFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCL 232
VF + + ++ +++F +
Sbjct: 376 DRLS---------VFPP------SAHIPTILLS---------------------LIWFDV 399
Query: 233 DTACVMIFTAEYLLRLFAAPDRCKFVRSVMSI-IDVVA-----------ILPYYIGLGIT 280
+ VM+ + + S+ SI +++ I+ +Y
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 281 DNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAIIIFAT 340
D+DD + + + F + +G+ LK+ +F + +F
Sbjct: 460 DSDD----LIPPYLDQYF--YSH---------IGHHLKNIEHPERMTLFRM-----VFLD 499
Query: 341 VMFYAEK-NVDGTN 353
F +K D T
Sbjct: 500 FRFLEQKIRHDSTA 513
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 48.2 bits (114), Expect = 4e-06
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 325 GFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYG--DMVPETIA 382
G + + +A+ AAF ++I T TT+GYG + E
Sbjct: 63 GLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPL 122
Query: 383 GKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQR 418
+ V S+ G ++ + + I++ +R + Q
Sbjct: 123 AVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKRAQT 158
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 47.0 bits (111), Expect = 9e-06
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 324 LGFLVFSLAMAIIIFATVMFYAEKNVDG--------TNFTSIPAAFWYTIVTMTTLGYGD 375
+ + V L +I + + + TN +AF ++I T TT+GYG
Sbjct: 51 MVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGY 110
Query: 376 MVP--ETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRA 419
V + G I+ + S+ G +V A V + F +I +RA
Sbjct: 111 RVITDKCPEGIILLLIQSVLGSIVNAFMVGCM---FVKISQPKKRA 153
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 38.7 bits (89), Expect = 0.003
Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 4/107 (3%)
Query: 322 SELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETI 381
+L + + A +V+ G +A ++ ++T GYG VP +
Sbjct: 63 QQLEQFLGRVLEASNYGVSVL----SQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSD 118
Query: 382 AGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRDR 428
GK + S+ G+ L + +V + +
Sbjct: 119 GGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFHIRWGFS 165
Score = 37.5 bits (86), Expect = 0.007
Identities = 8/53 (15%), Positives = 23/53 (43%)
Query: 360 AFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRI 412
+F++ ++++T+G GD VP + + + + L + ++
Sbjct: 205 SFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETF 257
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 36.3 bits (83), Expect = 0.018
Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 13/166 (7%)
Query: 274 YIGLGITDNDDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLVFSLAM 333
Y +GI + + + L S + FL+ +
Sbjct: 149 YALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLL 208
Query: 334 AIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVP------ETIAGKIVG 387
++ V Y E A ++ IVT+TT+G+GD V ++ A + +
Sbjct: 209 FVLTPTFVFCYMEDWSKLE-------AIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLV 261
Query: 388 GVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQRDREFVEL 433
L G+ A + I + + + + + L
Sbjct: 262 WFWILLGLAYFASVLTTIGNWLRVVSRRTRAEMGGLTAQSNSLEVL 307
Score = 32.5 bits (73), Expect = 0.35
Identities = 12/60 (20%), Positives = 29/60 (48%)
Query: 356 SIPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQ 415
+ +AF+++ +TT+GYG++ T AG++ +L G+ + + + +
Sbjct: 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRH 174
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.1 bits (72), Expect = 0.30
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 477 QKARLARIRIAKASSGAAFVSKKKAAEARMAAQESGLEIDENYREED 523
Q+ RL ++ SK E R A++ +++E + +
Sbjct: 94 QRKRLQE----LDAA-----SKVMEQEWREKAKK---DLEEWNQRQS 128
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 31.2 bits (70), Expect = 0.66
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 18/73 (24%)
Query: 35 RRKADDEKLLINVSGRRFET-------------WRNTLEKYPDSLLGSNEREFFYDEDSK 81
K +K L+ ++ FE N ++ D + N++ F+D SK
Sbjct: 155 DTKQKGKKFLV-IAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISK 213
Query: 82 EY----FFDRDPD 90
Y FF +
Sbjct: 214 LYYVQFFFKQAEQ 226
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2;
phosphorylation, nucleotide biosynthesis, transferase;
2.55A {Homo sapiens} PDB: 2c4k_A*
Length = 379
Score = 29.6 bits (67), Expect = 2.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 500 KAAEARMAAQESGLEIDENYREEDIFEIQ 528
K + +E+ ++I E+ R +D+F IQ
Sbjct: 58 KVQVYQEPNRETRVQIQESVRGKDVFIIQ 86
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 29.9 bits (67), Expect = 2.7
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 359 AAFWYTIVTMTTLGYGDMVPETI--AGKIVGGVCSLSGVLVIALPVPVIV 406
A W ++++ GY D + A ++ GV ++ + ++ P+ VI
Sbjct: 361 ATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWVIA 410
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis,
transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A
2h06_A 2h07_A 2h08_A
Length = 326
Score = 29.5 bits (67), Expect = 2.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 500 KAAEARMAAQESGLEIDENYREEDIFEIQ 528
K + + QE+ +EI E+ R ED++ +Q
Sbjct: 29 KVVTKKFSNQETCVEIGESVRGEDVYIVQ 57
>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD,
TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A
{Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A
Length = 334
Score = 29.0 bits (65), Expect = 4.4
Identities = 14/70 (20%), Positives = 19/70 (27%), Gaps = 13/70 (18%)
Query: 5 AAWLPFARAAAIGWVPIATHPLPPPPIPKDRRKADDEKLLINVSGRRFET--------WR 56
A F A +PI HP + +L + ET
Sbjct: 158 ATLEAFLTHCANEDIPILVHPWDMMGGQ-----RMKKWMLPWLVAMPAETQLAILSLILS 212
Query: 57 NTLEKYPDSL 66
E+ P SL
Sbjct: 213 GAFERIPKSL 222
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling,
hedgehog VIA CO- immunoprecipitation, membrane protein;
2.40A {Drosophila melanogaster}
Length = 506
Score = 28.7 bits (63), Expect = 5.9
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 77 DEDSKEYFFDRDPDIFRHILNYYRTGKLHYPKHECLTSYDEELAFFGILPDVIG 130
E ++F +F + Y C++ + +EL FG +PD +
Sbjct: 137 LEVMDKFFNTLYQKMFTVLNTQY---TFDENYMRCVSEHMKELKPFGDVPDKLS 187
>3khi_A Putative metal-dependent hydrolase; structural genomics, J center
for structural genomics, JCSG, protein structure INI
PSI-2; 1.95A {Klebsiella pneumoniae subsp} PDB: 3dl1_A
Length = 267
Score = 28.0 bits (62), Expect = 7.3
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 9/40 (22%)
Query: 68 GSNEREFFYDEDSKEYFFDR-------DPDIFRHILNYYR 100
++ E F EYFF P +++ ++YR
Sbjct: 208 ATDPAECF--AVLSEYFFSAPELFAPRFPALWQRFCHFYR 245
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.428
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,898,574
Number of extensions: 563167
Number of successful extensions: 1564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1502
Number of HSP's successfully gapped: 65
Length of query: 542
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 444
Effective length of database: 3,965,535
Effective search space: 1760697540
Effective search space used: 1760697540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.9 bits)