RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13459
(542 letters)
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 105
Score = 145 bits (366), Expect = 2e-42
Identities = 75/102 (73%), Positives = 99/102 (97%)
Query: 45 INVSGRRFETWRNTLEKYPDSLLGSNEREFFYDEDSKEYFFDRDPDIFRHILNYYRTGKL 104
+NVSG RF+TW++TLE+YPD+LLGS+ER+FFY ++++YFFDRDPDIFRHILN+YRTGKL
Sbjct: 4 LNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGKL 63
Query: 105 HYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRKRENAE 146
HYP+HEC+++YDEELAFFG++P++IGDCCYE+Y+DR+RENAE
Sbjct: 64 HYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRENAE 105
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel
{California sea hare (Aplysia californica) [TaxId:
6500]}
Length = 103
Score = 135 bits (341), Expect = 8e-39
Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 40 DEKLLINVSGRRFETWRNTLEKYPDSLLGS-NEREFFYDEDSKEYFFDRDPDIFRHILNY 98
+ +++INV G R ET++ TL+K P + L E YD EYFFDR P +F I+NY
Sbjct: 1 ENRVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINY 60
Query: 99 YRTGKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRK 141
YR+GKLHYP C ++EEL F+G+ + + CC+ Y +
Sbjct: 61 YRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTAHR 103
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare
(Aplysia californica) [TaxId: 6500]}
Length = 100
Score = 119 bits (299), Expect = 5e-33
Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 7/103 (6%)
Query: 41 EKLLINVSGRRFETWRNTLEKYPDSLLGS-NEREFFYDEDSKEYFFDRDPDIFRHILNYY 99
E+++INVSG RFET TL ++PD+LLG+ +R +YD EYFFDR+ F IL +Y
Sbjct: 1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFDRNRPSFDAILYFY 60
Query: 100 RT-GKLHYPKHECLTSYDEELAFFGILPDVIGDCCYEDYRDRK 141
++ G+L P + L + EE+ F+ +G+ +E YR+ +
Sbjct: 61 QSGGRLRRPVNVPLDVFSEEIKFYE-----LGENAFERYREDE 98
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 95.0 bits (236), Expect = 3e-24
Identities = 23/96 (23%), Positives = 44/96 (45%)
Query: 323 ELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIA 382
G L + ++ + + AE+ G + P A W+++ T TT+GYGD+ P T+
Sbjct: 7 AAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLW 66
Query: 383 GKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQR 418
G+ V V ++G+ L + + F + +
Sbjct: 67 GRCVAVVVMVAGITSFGLVTAALATWFVGREQERRG 102
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 90.4 bits (224), Expect = 2e-22
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Query: 300 IFKFSRHSQGLRILGYTLKSCASELGFLVFSLAMAI---IIFATVMFYAEKNVDGTNFTS 356
I + +G Y S F+ + + +FA ++ S
Sbjct: 1 ITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGS 60
Query: 357 IPAAFWYTIVTMTTLGYGDMVPETIAGKIVGGVCSLSGVLVIALPVPVIVSNFSR 411
AF++++ TM T+GYG ++P + + +L G+L +A+ +I + F+R
Sbjct: 61 FTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 115
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 80.0 bits (197), Expect = 7e-19
Identities = 20/88 (22%), Positives = 41/88 (46%)
Query: 324 LGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAG 383
L + +FA + + + + AF++++ T+ T+GYGDM P+T+
Sbjct: 29 FASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYA 88
Query: 384 KIVGGVCSLSGVLVIALPVPVIVSNFSR 411
+ + G+ IAL ++ + F+R
Sbjct: 89 HAIATLEIFVGMSGIALSTGLVFARFAR 116
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 72.0 bits (177), Expect = 2e-16
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 326 FLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGYGDMVPETIAGKI 385
+ L +A+II+ T F+ + S + ++T VT+ T+GYGD P T G
Sbjct: 3 TRILLLVLAVIIYGTAGFHFIEG------ESWTVSLYWTFVTIATVGYGDYSPSTPLGMY 56
Query: 386 VGGVCSLSGVLVIALPVPVIVS 407
+ G+ A+ V ++
Sbjct: 57 FTVTLIVLGIGTFAVAVERLLE 78
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 57
Score = 71.0 bits (174), Expect = 2e-16
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 323 ELGFLVFSLAMAIIIFATVMFYAEKNVDGTNFTSIPAAFWYTIVTMTTLGY 373
G L + ++ + + AE+ G + P A W+ T TT+GY
Sbjct: 7 AAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY 57
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
pernix [TaxId: 56636]}
Length = 132
Score = 73.4 bits (180), Expect = 3e-16
Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 186 VFYYVTGFFIAVSVMANVVETVPCGHRPGRAGSLPCGERYKIVFFCLDTACVMIFTAEYL 245
+ + +SV+ VVE Y + + +D V+I A+Y
Sbjct: 7 LVELGVSYAALLSVIVVVVEYTMQLSGE-----------YLVRLYLVDLILVIILWADYA 55
Query: 246 LRLFAAPDRCKFVRSVMSIIDVVAILPYYIGLGITDNDDVSGAFVTLRVFRVFRIFKFSR 305
R + + D +V+ ++ ++ A++P + I + R+ R+ R +
Sbjct: 56 YRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIEGHLAG---LGLFRLVRLLRFLRILL 110
Query: 306 HSQGLRILGYTLKSCASEL 324
+ A +L
Sbjct: 111 IISRGSKFLSAIADAADKL 129
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 27.1 bits (60), Expect = 1.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 477 QKARLARIRIAKASSGAAFVSKKKAAEARMAAQ 509
QK+ +AR + + + A S+ +A + M+ Q
Sbjct: 15 QKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQ 47
>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli
[TaxId: 562]}
Length = 158
Score = 26.9 bits (59), Expect = 4.5
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 52 FETWRNTLEKYPDSLLGSNEREFFY---DEDSKEYFFDRDPDIFRHILNYY 99
F+ W ++ P+++ E + + EYF + PD+F ++N +
Sbjct: 107 FDQWVAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKF 157
>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus
aureus [TaxId: 1280]}
Length = 111
Score = 25.9 bits (57), Expect = 5.8
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 135 EDYRDRKRENAERLMDDKL--------SENGDQNLPQLTNIRQKMWRAFEN 177
++ D + ER+ D+L E Q I + + + N
Sbjct: 60 DNLTDHDLQFIERIEQDELFYPLITMNDEYVADGYIQTKQITRFIDQKLVN 110
>d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage
phi-29 [TaxId: 10756]}
Length = 388
Score = 26.7 bits (58), Expect = 8.3
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 70 NEREFFYDEDSKEYFFDRDPDIFRHILNYYRTGKLHYPK 108
+R + D DS PD+ + I++ + G +
Sbjct: 262 YDRIIYCDTDSIHLTGTEIPDVIKDIVDPKKLGYWAHES 300
>d1vpya_ c.1.32.1 (A:) Hypothetical protein EF0366 {Enterococcus
faecalis [TaxId: 1351]}
Length = 269
Score = 26.5 bits (58), Expect = 8.5
Identities = 11/61 (18%), Positives = 19/61 (31%)
Query: 4 VAAWLPFARAAAIGWVPIATHPLPPPPIPKDRRKADDEKLLINVSGRRFETWRNTLEKYP 63
V L F + V + +P P+P + +L GR W ++
Sbjct: 154 VKQMLQFMKENQFSLVIVDEPQIPTNPVPFYPYVTNPNLVLFRFHGRNAAGWLANDAEWR 213
Query: 64 D 64
Sbjct: 214 K 214
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.428
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,159,332
Number of extensions: 105958
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 17
Length of query: 542
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 452
Effective length of database: 1,171,896
Effective search space: 529696992
Effective search space used: 529696992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.2 bits)