Query psy13460
Match_columns 281
No_of_seqs 250 out of 1629
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 19:57:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01607 CBM_14: Chitin bindin 99.1 5.8E-11 1.3E-15 80.7 3.4 51 9-64 1-53 (53)
2 PF01607 CBM_14: Chitin bindin 99.1 9.1E-11 2E-15 79.7 4.1 49 82-130 5-53 (53)
3 smart00494 ChtBD2 Chitin-bindi 99.0 5.7E-10 1.2E-14 76.3 4.6 54 7-65 1-55 (56)
4 smart00494 ChtBD2 Chitin-bindi 98.9 3.2E-09 7E-14 72.5 4.9 48 152-203 7-54 (56)
5 PF03427 CBM_19: Carbohydrate 76.9 2.6 5.6E-05 29.7 2.6 21 164-184 36-56 (61)
6 PF03427 CBM_19: Carbohydrate 70.1 4.7 0.0001 28.3 2.6 21 93-113 35-55 (61)
7 PF08475 Baculo_VP91_N: Viral 33.3 57 0.0012 28.1 3.6 43 85-132 106-148 (183)
8 PF12662 cEGF: Complement Clr- 25.4 45 0.00098 18.9 1.2 17 107-123 5-21 (24)
9 PF01826 TIL: Trypsin Inhibito 23.1 33 0.00071 22.9 0.4 19 106-125 35-53 (55)
10 PF08475 Baculo_VP91_N: Viral 22.0 1.6E+02 0.0035 25.3 4.5 39 13-58 104-142 (183)
No 1
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=99.10 E-value=5.8e-11 Score=80.73 Aligned_cols=51 Identities=41% Similarity=0.901 Sum_probs=36.9
Q ss_pred CCCC-CcceeCCCCCcceEEcCCCcceEeeCCCCCeecCCCCcccccccccccc-ccC
Q psy13460 9 CPDD-FGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHN-VDC 64 (281)
Q Consensus 9 C~~~-~G~~p~p~~C~kY~~C~~g~~~~~~Cp~g~~Fd~~~~~~~~~~C~~~~~-v~C 64 (281)
|+.. +|+++++.+|++||+|.+|.++.+.||.|++||.. ++.|+++.. +.|
T Consensus 1 C~~~~~~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~-----~~~C~~~~~~~~C 53 (53)
T PF01607_consen 1 CPGRGDGFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPS-----SQRCVPPSNVVQC 53 (53)
T ss_dssp ----SSEEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TT-----TSSEE-TTT-TT-
T ss_pred CCccCCeeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcC-----cCEEcCCccCCCC
Confidence 5543 89999999999999999999999999999999999 999999887 555
No 2
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=99.10 E-value=9.1e-11 Score=79.75 Aligned_cols=49 Identities=27% Similarity=0.716 Sum_probs=37.1
Q ss_pred CCccccCCCCCCccEEecCCceeEEeCCCCCeeecCCCcccCCCCCCCC
Q psy13460 82 LYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWADQVPEC 130 (281)
Q Consensus 82 ~~G~~p~p~~C~~Y~~C~~G~~~~~~Cp~G~~Fd~~~~~C~~~~~v~~C 130 (281)
.+|+|+++.+|++||+|.+|.++++.||.|++||..+++|+++..+..|
T Consensus 5 ~~~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~~~~C 53 (53)
T PF01607_consen 5 GDGFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSNVVQC 53 (53)
T ss_dssp SSEEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT-TT-
T ss_pred CCeeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcCcCEEcCCccCCCC
Confidence 4789999999999999999999999999999999999999999883355
No 3
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=98.99 E-value=5.7e-10 Score=76.31 Aligned_cols=54 Identities=39% Similarity=0.987 Sum_probs=48.7
Q ss_pred CCCCCC-CcceeCCCCCcceEEcCCCcceEeeCCCCCeecCCCCccccccccccccccCC
Q psy13460 7 FQCPDD-FGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCG 65 (281)
Q Consensus 7 f~C~~~-~G~~p~p~~C~kY~~C~~g~~~~~~Cp~g~~Fd~~~~~~~~~~C~~~~~v~C~ 65 (281)
+.|... .|+++|+.+|++||+|..|.++.+.||.|++||.. ++.|+++..+.|.
T Consensus 1 ~~C~~~~~g~~~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~-----~~~C~~~~~~~C~ 55 (56)
T smart00494 1 NECPGRGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFDPA-----TQTCDWPDNVGCG 55 (56)
T ss_pred CcCCCCCCccccCcccCCeeEEcCCCcEEeccCcCCCeECCC-----CCCcCCcccCCCC
Confidence 357654 89999999999999999999999999999999999 9999999887775
No 4
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=98.87 E-value=3.2e-09 Score=72.51 Aligned_cols=48 Identities=38% Similarity=0.710 Sum_probs=45.0
Q ss_pred cccccCCCCCCcceEEccCCeEEEccCCCCCeEccccCCCccCCCCCCCCCC
Q psy13460 152 SFSRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDGEGTGNCEDPEEVPG 203 (281)
Q Consensus 152 ~~~~~p~p~dC~~Yy~C~~G~~~~~~Cp~G~~Fd~~~~~~~~~C~~~~~v~C 203 (281)
..++++|+.+|++||.|.+|.+..+.||.|++||.. ++.|+++..+.|
T Consensus 7 ~~g~~~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~----~~~C~~~~~~~C 54 (56)
T smart00494 7 GDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFDPA----TQTCDWPDNVGC 54 (56)
T ss_pred CCccccCcccCCeeEEcCCCcEEeccCcCCCeECCC----CCCcCCcccCCC
Confidence 357899999999999999999999999999999999 999999999887
No 5
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=76.88 E-value=2.6 Score=29.65 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.5
Q ss_pred ceEEccCCeEEEccCCCCCeE
Q psy13460 164 KYYICLEGTAREYGCPIGTVF 184 (281)
Q Consensus 164 ~Yy~C~~G~~~~~~Cp~G~~F 184 (281)
+|-+|.+|.++...||.|++-
T Consensus 36 ~faiC~~G~Wv~~~C~~Gt~C 56 (61)
T PF03427_consen 36 SFAICDHGTWVITPCPAGTTC 56 (61)
T ss_pred CEEEcCCCcEEEeeCCCCCEE
Confidence 799999999999999999874
No 6
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=70.07 E-value=4.7 Score=28.35 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.3
Q ss_pred CccEEecCCceeEEeCCCCCe
Q psy13460 93 DVFWNCWNGESSRYQCSPGLA 113 (281)
Q Consensus 93 ~~Y~~C~~G~~~~~~Cp~G~~ 113 (281)
.+|-+|.+|.++++.||.|++
T Consensus 35 G~faiC~~G~Wv~~~C~~Gt~ 55 (61)
T PF03427_consen 35 GSFAICDHGTWVITPCPAGTT 55 (61)
T ss_pred CCEEEcCCCcEEEeeCCCCCE
Confidence 469999999999999999986
No 7
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=33.31 E-value=57 Score=28.12 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=34.7
Q ss_pred cccCCCCCCccEEecCCceeEEeCCCCCeeecCCCcccCCCCCCCCCC
Q psy13460 85 IFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWADQVPECKI 132 (281)
Q Consensus 85 ~~p~p~~C~~Y~~C~~G~~~~~~Cp~G~~Fd~~~~~C~~~~~v~~C~~ 132 (281)
.-+++.+=.+|..=.+..+..+.||.+..||.. +|+... -|..
T Consensus 106 V~~~~~d~~kF~~~~DDGwv~~~CP~~~~FD~~--~Cvp~p---~C~~ 148 (183)
T PF08475_consen 106 VRPHPNDPTKFIARGDDGWVDMDCPENERFDGN--KCVPIP---PCDN 148 (183)
T ss_pred eecCCCCCceEEEEecCCcEEEeCCCccccccc--ceeecC---ccCC
Confidence 456777888888877777999999999999998 998753 5844
No 8
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=25.45 E-value=45 Score=18.88 Aligned_cols=17 Identities=29% Similarity=0.724 Sum_probs=14.1
Q ss_pred eCCCCCeeecCCCcccC
Q psy13460 107 QCSPGLAYDREARVCMW 123 (281)
Q Consensus 107 ~Cp~G~~Fd~~~~~C~~ 123 (281)
.|+.|+..++..+.|+-
T Consensus 5 ~C~~Gy~l~~d~~~C~D 21 (24)
T PF12662_consen 5 SCPPGYQLSPDGRSCED 21 (24)
T ss_pred eCCCCCcCCCCCCcccc
Confidence 69999999888888864
No 9
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=23.07 E-value=33 Score=22.87 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=15.4
Q ss_pred EeCCCCCeeecCCCcccCCC
Q psy13460 106 YQCSPGLAYDREARVCMWAD 125 (281)
Q Consensus 106 ~~Cp~G~~Fd~~~~~C~~~~ 125 (281)
=.|+.|++++.. +.|+...
T Consensus 35 C~C~~G~v~~~~-~~CV~~~ 53 (55)
T PF01826_consen 35 CFCPPGYVRNDN-GRCVPPS 53 (55)
T ss_dssp EEETTTEEEETT-SEEEEGG
T ss_pred CCCCCCeeEcCC-CCEEcHH
Confidence 369999999987 8888753
No 10
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=22.00 E-value=1.6e+02 Score=25.34 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=33.1
Q ss_pred CcceeCCCCCcceEEcCCCcceEeeCCCCCeecCCCCccccccccc
Q psy13460 13 FGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDY 58 (281)
Q Consensus 13 ~G~~p~p~~C~kY~~C~~g~~~~~~Cp~g~~Fd~~~~~~~~~~C~~ 58 (281)
..+-+|+.|=++|..=.+...+...||.+..||.. +|+.
T Consensus 104 ~rV~~~~~d~~kF~~~~DDGwv~~~CP~~~~FD~~-------~Cvp 142 (183)
T PF08475_consen 104 PRVRPHPNDPTKFIARGDDGWVDMDCPENERFDGN-------KCVP 142 (183)
T ss_pred cceecCCCCCceEEEEecCCcEEEeCCCccccccc-------ceee
Confidence 34678899999998877766899999999999996 8885
Done!