RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13460
(281 letters)
>gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain. This
domain is called the Peritrophin-A domain and is found
in chitin binding proteins particularly peritrophic
matrix proteins of insects and animal chitinases. Copies
of the domain are also found in some baculoviruses.
Relevant references that describe proteins with this
domain include. It is an extracellular domain that
contains six conserved cysteines that probably form
three disulphide bridges. Chitin binding has been
demonstrated for a protein containing only two of these
domains.
Length = 53
Score = 51.3 bits (123), Expect = 4e-09
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 81 RLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWADQVPEC 130
R G++PD C ++ C NG++ + C GL +D C + D V +C
Sbjct: 4 RPDGLYPDPGDCSKYYQCSNGKAVVFTCPAGLVFDPALGTCDYPDNVVDC 53
Score = 42.8 bits (101), Expect = 5e-06
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 9 CPD-DFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVD 63
C G YP C KY++C +A + TC GL FD CDY NV
Sbjct: 1 CEGRPDGLYPDPGDCSKYYQCSNGKAVVFTCPAGLVFDPA-----LGTCDYPDNVV 51
Score = 39.0 bits (91), Expect = 1e-04
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 156 HAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDGEGTGNCEDPEEVPG 203
+ P DC KYY C G A + CP G VF G C+ P+ V
Sbjct: 9 YPDPGDCSKYYQCSNGKAVVFTCPAGLVFD----PALGTCDYPDNVVD 52
>gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2.
Length = 49
Score = 47.8 bits (114), Expect = 6e-08
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 77 PKCP-RLYGIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWA 124
+CP R G++P C ++ C NG C GL ++ + C W
Sbjct: 1 NECPGRGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDWP 49
Score = 41.3 bits (97), Expect = 1e-05
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 150 GGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVF 184
G + HP DC KYY C G CP G VF
Sbjct: 5 GRGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVF 39
Score = 40.5 bits (95), Expect = 3e-05
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 9 CP-DDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDY 58
CP G YPH C KY++C + +C GL F+ + CD+
Sbjct: 3 CPGRGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPA-----TQTCDW 48
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades
of the dihydrolipoamide acetyltransferase subunit of the
pyruvate dehydrogenase complex. It includes sequences
from mitochondria and from alpha and beta branches of
the proteobacteria, as well as from some other bacteria.
Sequences from Gram-positive bacteria are not included.
The non-enzymatic homolog protein X, which serves as an
E3 component binding protein, falls within the clade
phylogenetically but is rejected by its low score
[Energy metabolism, Pyruvate dehydrogenase].
Length = 436
Score = 33.2 bits (76), Expect = 0.14
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 217 KSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIP 271
++ + AS P+ + AP A PS P S + Q+P P+ P
Sbjct: 81 VADAFKNYKLESSASPAPKPSEIAPT--APPSAPKPSPAPQKQSPEPSSPAPLSD 133
>gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein;
Provisional.
Length = 172
Score = 32.2 bits (73), Expect = 0.18
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 219 ELLAGLPGGN--GASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQ 267
+LL G P G+ G Q AP+Q+A Q +SRP P PQ
Sbjct: 109 QLLGGRPQGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQP-APQ 158
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 32.8 bits (75), Expect = 0.23
Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 218 SELLA---GLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRL 274
SELL L G A + P P AAP+ P +A +P RP P
Sbjct: 368 SELLDRLEALERGAPAPPSAAWGAPTP---AAPAAPPPAAAPPVPPAAPARPAAARPAPA 424
Query: 275 LPQEE 279
Sbjct: 425 PAPPA 429
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 32.4 bits (74), Expect = 0.26
Identities = 9/51 (17%), Positives = 12/51 (23%), Gaps = 2/51 (3%)
Query: 233 NPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQ--NIPQRLLPQEEQN 281
N + P Q P + QQ + L Q Q
Sbjct: 280 NQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQ 330
Score = 29.4 bits (66), Expect = 2.4
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 238 QPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQN 281
QP PQ + P L ++ P P + Q+ Q+
Sbjct: 275 QPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGP 318
Score = 28.6 bits (64), Expect = 4.5
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 222 AGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQ 277
P G+ P+ PAP Q A PL + P + Q++ P
Sbjct: 204 PQPPQGHPEQVQPQQFLPAPSQ-APAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPP 258
Score = 28.6 bits (64), Expect = 4.8
Identities = 13/48 (27%), Positives = 16/48 (33%)
Query: 234 PRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQN 281
P QP QQ+ P + P P PQ PQ+ Q
Sbjct: 257 PPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQL 304
Score = 27.4 bits (61), Expect = 9.5
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 13/60 (21%)
Query: 231 SSNPRSKQPAPQQEAAPSQPLKSAK------------SRPQAP-SPNRPQQNIPQRLLPQ 277
++ QP E+ P + K R QAP P PQQ +PQ + P+
Sbjct: 128 TAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPR 187
>gnl|CDD|236362 PRK09010, PRK09010, single-stranded DNA-binding protein;
Provisional.
Length = 177
Score = 31.4 bits (71), Expect = 0.31
Identities = 15/50 (30%), Positives = 19/50 (38%)
Query: 222 AGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIP 271
G P G + PQQ +Q A+SRPQ +P P P
Sbjct: 119 GGAPAGGNIGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPP 168
Score = 27.1 bits (60), Expect = 8.3
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 226 GGNGASSNPRSKQPAPQQEAAPSQPLKSAKS-RPQAPSPNRPQQNIPQ 272
GG P QQ+ QP + + + +RPQQ+ P
Sbjct: 114 GGRQGGGAPAGGNIGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPA 161
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion
protein; Provisional.
Length = 311
Score = 31.6 bits (71), Expect = 0.39
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 235 RSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQ 280
+SK+P P + A + K AK P +N+ LL +E+Q
Sbjct: 126 KSKKPLPVEPKAKVETKKVAKPSKVEVKPVEKDENVDPELLKREQQ 171
>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau;
Validated.
Length = 709
Score = 32.0 bits (72), Expect = 0.42
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 218 SELLAGLPGGNGASSN--PRSKQPAPQQEAAPSQPLKSAK----SRPQAPSPNRPQQN 269
SE P N +++ P P Q AA + + S + P N+ +N
Sbjct: 417 SEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKN 474
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 31.7 bits (72), Expect = 0.45
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 222 AGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQ 277
+ P + A++ P + Q A Q P P A P P PQ + P
Sbjct: 399 SPSPSQSSAAAQPSAPQSATQPAGTPPT----VSVDPPAAVPVNPPSTAPQAVRPA 450
Score = 28.6 bits (64), Expect = 4.6
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 225 PGGNGASSNPRSKQPAPQQE------AAPSQPLKSAKSRPQAPSPNRPQQNIPQ 272
G P QPA + A+PS SA ++P AP P
Sbjct: 372 GRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPP 425
>gnl|CDD|219618 pfam07883, Cupin_2, Cupin domain. This family represents the
conserved barrel domain of the 'cupin' superfamily
('cupa' is the Latin term for a small barrel).
Length = 70
Score = 29.1 bits (66), Expect = 0.46
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 146 EIAAGGSFSRHAHPDDCRKYYICLEGTAR 174
+ G S H HP + +++ LEG
Sbjct: 4 TLPPGESSPPHRHPGE--EFFYVLEGEGE 30
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 31.6 bits (71), Expect = 0.47
Identities = 11/47 (23%), Positives = 16/47 (34%)
Query: 234 PRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQ 280
P + PA Q + P Q +P +P + Q EQ
Sbjct: 216 PTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRSREQ 262
Score = 28.5 bits (63), Expect = 4.4
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 234 PRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQ 280
++QP Q A Q + A P PQ EQ
Sbjct: 211 NPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQP---PQTEQ 254
Score = 27.7 bits (61), Expect = 7.2
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 223 GLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQ 280
GLP +S R + AP+ P+ + + Q P+ QQ Q + P ++
Sbjct: 184 GLPKTFTSSHGHRHRH-APKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQP 240
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 31.4 bits (71), Expect = 0.61
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 230 ASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQ 272
S+ + PA Q AA S P + AP+ + Q PQ
Sbjct: 193 GSTPATAPAPASAQPAAQS-PAATQPEPAAAPAAAKAQAPAPQ 234
>gnl|CDD|183757 PRK12800, fliF, flagellar MS-ring protein; Reviewed.
Length = 574
Score = 31.2 bits (70), Expect = 0.72
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 223 GLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQN 269
G G GA+SN + PAP AP P + A +P ++
Sbjct: 313 GPQGPPGATSNSPGQPPAPAAAGAPGTPAAANGQAAAAAAPTESSKS 359
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 30.8 bits (69), Expect = 0.74
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 225 PGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQ 272
P S+ + Q P PS +++ + P A +P+ + PQ
Sbjct: 41 PQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQ 88
Score = 30.0 bits (67), Expect = 1.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 230 ASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNI 270
A++ P +K APQQ + P + PQ+P+ + I
Sbjct: 59 ATTPPSTKVEAPQQTPNATTPSSTKVETPQSPTTKQVPTEI 99
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 31.0 bits (70), Expect = 0.77
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 230 ASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQR 273
A +P + P + K+A AP +P+++ P+R
Sbjct: 20 APPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRR 63
Score = 29.9 bits (67), Expect = 1.6
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 227 GNGASSNPRSKQPAPQQEAAPSQPLKSA--KSRPQAPSPNRPQQNIPQRLLPQEEQ 280
G G + P P+P AP P K+A ++ AP+ P+ P++ P+ E+
Sbjct: 10 GKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRER 65
Score = 29.1 bits (65), Expect = 2.6
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 212 LKSIRK------SELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNR 265
LK+++K +E A P A+ P + P +A R + P ++
Sbjct: 2 LKALKKIFGKGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAP-AAAAPRAEKPKKDK 60
Query: 266 PQQNIP 271
P++
Sbjct: 61 PRRERK 66
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 30.6 bits (70), Expect = 1.1
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 230 ASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIP 271
A + P PA AAP +P +A + +P
Sbjct: 66 APAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAA 107
Score = 30.2 bits (69), Expect = 1.4
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 8/79 (10%)
Query: 196 EDPEEVPG------EDYYGDLDLKSIRKSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQ 249
DP V DY + A + ++ P +K PA A P+
Sbjct: 20 ADPNSVDPSWREFFADYGPGSTAAPTAAAA--AAAAAASAPAAAPAAKAPAAPAPAPPAA 77
Query: 250 PLKSAKSRPQAPSPNRPQQ 268
+A +P A +
Sbjct: 78 AAPAAPPKPAAAAAAAAAP 96
Score = 27.9 bits (63), Expect = 7.5
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 219 ELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIP 271
E A G+ A+ + A A + P A P AP+P P P
Sbjct: 31 EFFADYGPGSTAAPTAAAAAAAAAASAPAAAP---AAKAPAAPAPAPPAAAAP 80
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 29.9 bits (68), Expect = 1.5
Identities = 9/63 (14%), Positives = 16/63 (25%)
Query: 215 IRKSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRL 274
+R+ + PGG G P AA +A + + +
Sbjct: 384 LRRLQEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAA 443
Query: 275 LPQ 277
Sbjct: 444 AAP 446
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 30.0 bits (67), Expect = 1.5
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 223 GLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRP--QAPSPNRPQ 267
G PG G+ P AP+ EAAP + P +AP+P PQ
Sbjct: 77 GEPGEAGSEPAP----AAPEPEAAPEPEAPAPAPTPAAEAPAPAAPQ 119
>gnl|CDD|225396 COG2840, COG2840, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 184
Score = 29.2 bits (66), Expect = 1.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 242 QQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQN 281
+ +PLK +AP NR Q+ PQRL P++
Sbjct: 16 RAAMKGVRPLKQDTDVHRAPLRNRRQKKEPQRLPPEQADP 55
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 29.7 bits (66), Expect = 1.6
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 230 ASSNPRSKQPAPQQEAAPS----QPLKSAKS-RPQAPSPNRPQQNI 270
+ + S P + PS QP++S KS PQ+P+ + Q ++
Sbjct: 119 SQTTTESTTPKTKVTTPPSTNTPQPMQSTKSDTPQSPTIKQAQTDM 164
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 29.9 bits (67), Expect = 1.7
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 219 ELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRL 274
+L +GLP GASS Q A+P SA A Q +P +
Sbjct: 674 DLFSGLPSTVGASSPAFQAASGSQAPASPPTAA-SAIEDLFANGMGSGSQTVPLPI 728
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 29.4 bits (67), Expect = 2.0
Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 32/94 (34%)
Query: 197 DPEEVPGEDYYGDLDLKSIRKSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKS 256
D V G G + K ++LA A + + AP A + P
Sbjct: 129 DASAVKGTGKGG-----RVTKEDVLA-------ALAAAAAAPAAPAAAAPAAAP------ 170
Query: 257 RPQAPSPNRPQ---------QNIPQRLLPQEEQN 281
AP RP+ + I +RLL E QN
Sbjct: 171 ---APLGARPEERVPMTRLRKTIAERLL--EAQN 199
Score = 28.6 bits (65), Expect = 3.8
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 219 ELLAGLPGGNGASSNPRSKQPAPQQEAAP--SQPLKSAKSRPQAPSP 263
++L + G A + + A AAP +Q +A+ A SP
Sbjct: 71 QVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSP 117
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.
Length = 499
Score = 29.4 bits (66), Expect = 2.3
Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 42/94 (44%)
Query: 112 LAYDREARVCMWADQVPECKIEEVANGFNCPAAGEIAAGGSFSRHAHPDDCRKYYICLEG 171
LA D RV WA + N F PA G I+ PD Y C++G
Sbjct: 323 LAQDEAERVRFWAGR---------KNAF--PAVGRIS----------PD-----YYCMDG 356
Query: 172 T----------------AREYGCPIGTVFKIGDG 189
T +++YG + VF GDG
Sbjct: 357 TIPRRELPGVLEGIARLSQQYGLRVANVFHAGDG 390
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 29.4 bits (65), Expect = 2.3
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 228 NGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPN 264
N ++ K+ QQ+ AP P ++AK P APS N
Sbjct: 276 NTNTATTEKKETTTQQQTAPKAPTEAAKPAP-APSTN 311
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 29.5 bits (66), Expect = 2.4
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 225 PGGNGASSNPRSKQPAPQQEAA-PSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQ 280
GG+ A ++P + AA P+ P + R P+ +R ++ E
Sbjct: 2852 LGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERP 2908
Score = 28.4 bits (63), Expect = 5.5
Identities = 11/45 (24%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 234 PRSKQPAPQQEAAPSQPLKSAKS-RPQAPSPNRPQQNIPQRLLPQ 277
R QP P +P P P RPQ + P
Sbjct: 2906 ERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA 2950
Score = 28.0 bits (62), Expect = 7.8
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 234 PRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQ 277
P + P Q AP P +PQ P P +PQ P PQ
Sbjct: 2901 PPDQPERPPQPQAPPPPQ----PQPQPPPPPQPQPPPPPPPRPQ 2940
Score = 28.0 bits (62), Expect = 8.3
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 234 PRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQ 277
RS + P +P +PQAP P +PQ P PQ
Sbjct: 2892 SRSTESFALPPDQPERP-----PQPQAPPPPQPQPQPPPPPQPQ 2930
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 29.1 bits (65), Expect = 3.5
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 220 LLAGLPGGNGASSNPRSKQPAPQQEAAPS----QPLKSAKSRPQAPSPNRPQQNIPQR 273
+LA PG +G + P + AP + AP+ A + P A P R
Sbjct: 360 MLAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAAR 417
>gnl|CDD|113398 pfam04625, DEC-1_N, DEC-1 protein, N-terminal region. The
defective chorion-1 gene (dec-1) in Drosophila encodes
follicle cell proteins necessary for proper eggshell
assembly. Multiple products of the dec-1 gene are formed
by alternative RNA splicing and proteolytic processing.
Cleavage products include S80 (80 kDa) which is
incorporated into the eggshell, and further proteolysis
of S80 gives S60 (60 kDa).
Length = 407
Score = 28.6 bits (63), Expect = 3.9
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 221 LAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNI 270
+ +PG GA++ + PAP + A P AP P+ Q I
Sbjct: 96 MPSMPGLLGAAAPVPAPAPAPAAAPPAAPA--PAADTPAAPIPDAVQPAI 143
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 28.7 bits (65), Expect = 3.9
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 231 SSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQ 280
++ ++EA S + A ++ QQ PQR P++E
Sbjct: 225 GEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEA 274
>gnl|CDD|221040 pfam11235, Med25_SD1, Mediator complex subunit 25 synapsin 1. The
overall function of the full-length Med25 is efficiently
to coordinate the transcriptional activation of RAR/RXR
(retinoic acid receptor/retinoic X receptor) in higher
eukaryotic cells. Human Med25 consists of several
domains with different binding properties, the
N-terminal, VWA, domain, this SD1 - synapsin 1 - domain
from residues 229-381, a PTOV(B) or ACID domain from
395-545, an SD2 domain from residues 564-645 and a
C-terminal NR box-containing domain (646-650) from
646-747. This The function of the SD domains is unclear.
Length = 168
Score = 27.9 bits (61), Expect = 4.1
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 217 KSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQ 267
+ L+ + G+G + +Q PQQ PS A Q P P++ Q
Sbjct: 118 QLSLVTTVSPGSGLAPVLTQQQVPPQQPQQPSMVPTPALGGVQPPQPSQQQ 168
Score = 27.9 bits (61), Expect = 4.3
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 224 LPGGNGASSNP-RSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQ 272
LP G G+ P +SKQP AA P + P PQ +PQ
Sbjct: 1 LPVGGGSVPGPLQSKQPVSLPPAAVLPPQSLPAPQNPLPPVTPPQMQVPQ 50
>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional.
Length = 694
Score = 28.8 bits (64), Expect = 4.5
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 18/103 (17%)
Query: 184 FKIGDGEGTGNCEDPEEVPGEDYYGDLDLKS-----------------IRKSELLAGLPG 226
I +G EE+P Y + + + + + G
Sbjct: 572 DPIYEGVSDSEEPVYEEIPTPRVYQNPLPRPMEGAGEPPDLDAPTSPWVEEENPIYGWGD 631
Query: 227 GNGASSNPRSKQPAPQQEAAPSQP-LKSAKSRPQAPSPNRPQQ 268
S P ++ P P +P P L + + RP A +P+ P
Sbjct: 632 SPLFSPPPAARFPPPDPALSPEPPALPAHRPRPGALAPDGPAN 674
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 28.4 bits (64), Expect = 5.1
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 225 PGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQ 268
P A + P + A + AP+ + P+ PQ
Sbjct: 681 PPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQA 724
Score = 28.0 bits (63), Expect = 6.0
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 225 PGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQ 268
GA S P + P+ Q AP+ + + AP
Sbjct: 448 APAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPA 491
Score = 28.0 bits (63), Expect = 6.9
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 225 PGGNGASSNPRSKQPAPQQEAAPSQP-------LKSAKSRPQAPSPNRPQQNIPQ 272
P A + + QPAP AP+ P A S P A +P+ P
Sbjct: 417 PAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471
>gnl|CDD|227465 COG5136, COG5136, U1 snRNP-specific protein C [RNA processing and
modification].
Length = 188
Score = 27.7 bits (61), Expect = 5.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 252 KSAKSRPQAPSPNRPQQNIPQRLLPQ 277
+ A S PQ + + Q Q+ LPQ
Sbjct: 129 QVAFSAPQTTASSNTQLTQQQQSLPQ 154
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 28.1 bits (63), Expect = 5.5
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 232 SNPRSKQPAPQQEAAPS-QPLKSAKSRPQAPSPNRPQQNIPQRLLPQE 278
P++ P P+ AA P +AK AP+ P + R P+E
Sbjct: 143 EKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPV-ARADPRE 189
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 28.0 bits (62), Expect = 5.6
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 238 QPAPQQEAAPSQPLKSAKSRPQAPSPNRPQ 267
P++ P +K Q P+ +PQ
Sbjct: 53 SDTPEEATIPETTVKPTAPPRQKPASGQPQ 82
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 27.7 bits (62), Expect = 5.6
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 234 PRSKQPAPQQEAAPSQPLK-----SAKSRPQAPSPNRPQQNIPQ 272
+++Q P A QP+ +A +PQ P+P R Q P
Sbjct: 123 QQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPV 166
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 28.2 bits (63), Expect = 5.7
Identities = 15/66 (22%), Positives = 25/66 (37%)
Query: 210 LDLKSIRKSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQN 269
KS+ A G + R + P P+ + P K+A + P A +P +
Sbjct: 848 ARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRP 907
Query: 270 IPQRLL 275
P+ L
Sbjct: 908 APRVKL 913
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 28.5 bits (63), Expect = 5.7
Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 12/59 (20%)
Query: 234 PRSKQPAPQQEAAPSQ------------PLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQ 280
P+ + PQQ AP P +P AP P Q P PQ +Q
Sbjct: 774 PQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 832
Score = 27.7 bits (61), Expect = 7.7
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 234 PRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQE 278
P+ + PQQ AP QP +P AP P Q P PQ+
Sbjct: 800 PQPQYQQPQQPVAP-QPQYQQPQQPVAPQPQYQQPQQPVAPQPQD 843
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 28.3 bits (64), Expect = 5.8
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 216 RKSELLAGLP---GGNGASSNPRSKQPAP-QQEAAPSQPLKSAKSRPQAPSPNRPQQNIP 271
RK EL+A + GG A++ PA + AA + +P A + + P
Sbjct: 47 RKGELIAAIKEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAP 106
Query: 272 QRLLPQEEQ 280
Sbjct: 107 AARAAAAAA 115
>gnl|CDD|188060 TIGR00531, BCCP, acetyl-CoA carboxylase, biotin carboxyl carrier
protein. This model is designed to identify biotin
carboxyl carrier protein as a peptide of acetyl-CoA
carboxylase. Scoring below the trusted cutoff is a
related protein encoded in a region associated with
polyketide synthesis in the prokaryote Saccharopolyspora
hirsuta, and a reported chloroplast-encoded biotin
carboxyl carrier protein that may be highly derived from
the last common ancestral sequence. Scoring below the
noise cutoff are biotin carboxyl carrier domains of
other enzymes such as pyruvate carboxylase.The gene name
is accB or fabE [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 156
Score = 27.5 bits (61), Expect = 5.9
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 234 PRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIP 271
+K+ A QQ AAP A QAP+P
Sbjct: 37 AAAKKSAVQQAAAPVPAQVPAAPSAQAPAPAVCAPAPA 74
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 27.6 bits (61), Expect = 8.1
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 231 SSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLP 276
S NP P+P Q +AP + + P P PQ ++P
Sbjct: 220 SFNPFLPGPSPAQPSAPPASIPAPPIPPVIQYVAPPPVPPPQPIIP 265
>gnl|CDD|200504 cd11243, Sema_7A, The Sema domain, a protein interacting module, of
semaphorin 7A (Sema7A, also called CD108). Sema7A plays
regulatory roles in both immune and nervous systems.
Unlike other semaphorins, which act as repulsive
guidance cues, Sema7A enhances central and peripheral
axon growth and is required for proper axon tract
formation during embryonic development. Sema7A also
plays a critical role in the negative regulation of T
cell activation and function. Sema7A is a
membrane-anchored member of the semaphorin family of
proteins. Semaphorins are regulatory molecules in the
development of the nervous system and in axonal
guidance. They also play important roles in other
biological processes, such as angiogenesis, immune
regulation, respiration systems and cancer. The Sema
domain is located at the N-terminus and contains four
disulfide bonds formed by eight conserved cysteine
residues. It serves as a receptor-recognition and
-binding module.
Length = 414
Score = 27.5 bits (61), Expect = 9.0
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 212 LKSIRKSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQ 259
L I K + L G +G+ NPR P ++ PS+ A P+
Sbjct: 266 LGDIDKVFRTSSLKGYSGSLPNPRPGTCVPPEQTHPSETFSFADEHPE 313
>gnl|CDD|221395 pfam12048, DUF3530, Protein of unknown function (DUF3530). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 272 to 336 amino acids in length.
These proteins are distantly related to alpa/beta
hydrolases so they may act as enzymes.
Length = 294
Score = 27.4 bits (61), Expect = 9.4
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 238 QPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQ 280
QEAA QP + + P+ R Q+++ +R LP++E
Sbjct: 16 LAVQAQEAAEEQPPATTAAAPKPALSERSQEDL-ERYLPEDEV 57
>gnl|CDD|165563 PHA03308, PHA03308, transcriptional regulator ICP4; Provisional.
Length = 1463
Score = 27.5 bits (60), Expect = 9.5
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 220 LLAGLPGG-NGASSNPRSKQPA-PQQEAAPSQPLKSAKSRPQAPSPNRP 266
LL G PGG +GA + + PA P A P + P P P+RP
Sbjct: 738 LLYGSPGGGDGAEPSAAQESPANPWPRAPPCDEQEPLSVSPYGPEPDRP 786
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.137 0.451
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,486,014
Number of extensions: 1344933
Number of successful extensions: 1418
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1348
Number of HSP's successfully gapped: 118
Length of query: 281
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 185
Effective length of database: 6,679,618
Effective search space: 1235729330
Effective search space used: 1235729330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.3 bits)