RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13460
(281 letters)
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR
{Tachypleus tridentatus} SCOP: g.31.1.1
Length = 74
Score = 52.1 bits (125), Expect = 2e-09
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 6 DFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCG 65
+ D G + SC ++ C A L+ C GL ++ + CD+ C
Sbjct: 8 RYSPCLDDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAY-----LKVCDWPSKAGCT 62
Query: 66 SRSQ 69
S ++
Sbjct: 63 SVNK 66
Score = 43.3 bits (102), Expect = 3e-06
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 84 GIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWADQV 127
G + C F+NC + C GL Y+ +VC W +
Sbjct: 16 GPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKA 59
Score = 42.9 bits (101), Expect = 5e-06
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 138 GFNCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVF 184
F C G + + C +Y C + AR CP G +
Sbjct: 3 AFRCGRYSPCLDDG---PNVNLYSCCSFYNCHKCLARLENCPKGLHY 46
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 47.4 bits (113), Expect = 2e-06
Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Query: 35 LKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSRSQLEPPVSTPKCPRLYGIFPDEVKCDV 94
++T L+ + + + G++P+ +
Sbjct: 357 IQTLRQELSLPYLPSGTPELEVPKPGQPSEPEHGPSPGQDTFCQGKA-DGLYPNPRERSS 415
Query: 95 FWNCWNGESSRYQCSPGLAYDREARVCMW 123
F++C G + C GL + + C W
Sbjct: 416 FYSCAAGRLFQQSCPTGLVFSNSCKCCTW 444
Score = 44.3 bits (105), Expect = 2e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 156 HAHPDDCRKYYICLEGTAREYGCPIGTVF 184
+ +P + +Y C G + CP G VF
Sbjct: 407 YPNPRERSSFYSCAAGRLFQQSCPTGLVF 435
Score = 41.2 bits (97), Expect = 2e-04
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 6 DFQCPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDY 58
Q D G YP+ ++ C ++C GL F ++ C +
Sbjct: 398 FCQGKAD-GLYPNPRERSSFYSCAAGRLFQQSCPTGLVFSNSCKC-----CTW 444
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 3e-04
Identities = 45/262 (17%), Positives = 74/262 (28%), Gaps = 97/262 (37%)
Query: 51 YLKE----NCDYLHNVD---CGSRSQLEPPVSTP-KCPRLY--GIFPDEVKCDVFWNCW- 99
Y +E Y V S L + T +++ G+ ++ W
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-------NIL--EWL 219
Query: 100 NGESSRYQCSPGLAYDREARVCMWADQVPECKIEEVANGFNCPAAGEIAAGGSFSRHAHP 159
S+ P Y +P +CP G I AH
Sbjct: 220 ENPSNT----PDKDY---------LLSIP----------ISCPLIGVIQL-------AH- 248
Query: 160 DDCRKYYICLEGTAREYGCPIGTVFKIGDGEGTGNCEDPEEVP----------GEDYYGD 209
Y + TA+ G G + G TG+ + + E ++
Sbjct: 249 -----YVV----TAKLLGFTPGELRSYLKG-ATGHSQG---LVTAVAIAETDSWESFF-V 294
Query: 210 LDLKSIRKSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSP-----N 264
K+I +L + G R + P PS S ++ PSP N
Sbjct: 295 SVRKAI---TVLFFI----GV----RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 265 RPQQNIPQRL------LPQEEQ 280
Q+ + + LP +Q
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQ 365
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.024
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 12/55 (21%)
Query: 51 YLKENCDYLHNVDCGSRSQLEPPVSTPKCPRLY---GIFPDEVK-----CDVFWN 97
+ NCD L + S + LEP +++ +FP + W
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYR----KMFDRLSVFPPSAHIPTILLSLIWF 397
Score = 27.9 bits (61), Expect = 4.8
Identities = 31/248 (12%), Positives = 66/248 (26%), Gaps = 68/248 (27%)
Query: 18 HHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSRSQLEPPV-ST 76
HH+ D E + + D + ++ N DC + + S
Sbjct: 5 HHM--------DFETGEHQYQ-----YKDILSVFED---AFVDNFDCKDVQDMPKSILSK 48
Query: 77 PKCPRLYGIFPDEVKCD-VFWNCWNGESSRYQ--CSPGLAYDREARVCMW-ADQV-PECK 131
+ + +FW + + Q L + + + + E +
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-----FLMSPIKTEQR 103
Query: 132 ---------IEEVANGFNCPAAGEIAAGGSFSRHAHPDDCRKY--------YICLEG--- 171
IE+ +N ++ A + SR R+ + ++G
Sbjct: 104 QPSMMTRMYIEQRDRLYN---DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 172 ---------TAREYG---CPIGTVFKIGDGEGTGNCEDPEEV--PGEDYYGDLDLKSIRK 217
Y +F + NC PE V + +D +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 218 SELLAGLP 225
S+ + +
Sbjct: 217 SDHSSNIK 224
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Length = 133
Score = 31.3 bits (71), Expect = 0.14
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 146 EIAAGGSFSRHAHPDDCRKYYICLEGTAR 174
++ G S H H + YYI L G
Sbjct: 63 KLPPGSSVGLHKHEGEFEIYYI-LLGEGV 90
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix
domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella
pneumoniae subsp}
Length = 125
Score = 31.0 bits (70), Expect = 0.16
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 10/41 (24%)
Query: 150 GGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDGE 190
G + H HP + + G A + G+G
Sbjct: 49 GQEIASHVHPHGQ-DTWTVISGEA---------EYHQGNGI 79
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 32.5 bits (73), Expect = 0.17
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 234 PRSKQPAPQQEAAPSQPLKSAKSRPQAPSPN 264
PR+ +P P+ S PLKS RP P P
Sbjct: 1018 PRNPKPLPRFPKKYSYPLKSPGVRPSNPRPG 1048
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo
sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S*
1nvw_S* 1nvx_S* 1bkd_S
Length = 490
Score = 31.6 bits (71), Expect = 0.29
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 234 PRSKQPAPQQEAAPSQPLKSAKSRPQAPSPN 264
PR+ +P P+ S PLKS RP P P
Sbjct: 459 PRNPKPLPRFPKKYSYPLKSPGVRPSNPRPG 489
>1v70_A Probable antibiotics synthesis protein; structural genomics,
thermus thermophilus HB8, riken structu
genomics/proteomics initiative, RSGI; 1.30A {Thermus
thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Length = 105
Score = 29.4 bits (66), Expect = 0.51
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 10/45 (22%)
Query: 146 EIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDGE 190
+ G + H H + YY LEG V ++G+ E
Sbjct: 34 ALLPGQAQKVHVHEGSDKVYYA-LEGEV---------VVRVGEEE 68
>2q30_A Uncharacterized protein; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans
subsp}
Length = 110
Score = 29.4 bits (66), Expect = 0.55
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 146 EIAAGGSFSRHAHPDDCRKYYICLEGTAR 174
AG H+H + + LEG
Sbjct: 39 TFKAGQELPVHSHNIEGELNIVVLEGEGE 67
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 29.3 bits (65), Expect = 1.4
Identities = 9/51 (17%), Positives = 13/51 (25%)
Query: 230 ASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQEEQ 280
P+ +A S L + P P P P P +
Sbjct: 15 VPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTV 65
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 28.7 bits (64), Expect = 2.0
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 216 RKSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKS----AKSRPQAPSPNRPQQNIP 271
+ E++A + + + AP + P Q + P P PQ P
Sbjct: 370 QMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPP 429
Query: 272 QRLLP 276
Q P
Sbjct: 430 QGAPP 434
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure
and stability, changes on oligomerisation,
water-bridges, DNA damage; 2.05A {Mycobacterium leprae}
PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A
1x3g_A 3a5u_A*
Length = 168
Score = 28.2 bits (63), Expect = 2.0
Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 1/70 (1%)
Query: 203 GEDYYG-DLDLKSIRKSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAP 261
GE ++++ I S A + S AP+Q P
Sbjct: 93 GEKRTVVEVEVDEIGPSLRYATAKVNKASRSGGGGGGFGSGSRQAPAQMSGGVGDDPWGS 152
Query: 262 SPNRPQQNIP 271
+P +
Sbjct: 153 APTSGSFGVG 162
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding
protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A
{Synechocystis SP}
Length = 361
Score = 28.6 bits (63), Expect = 2.4
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 143 AAGEIAAGGSFSRHAHPDDCRKYYICLEGTAR 174
A + G H HP+ Y+ L+G
Sbjct: 237 ALIHLEPGAMRQLHWHPNADEWQYV-LDGEMD 267
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 28.1 bits (62), Expect = 3.3
Identities = 6/44 (13%), Positives = 11/44 (25%)
Query: 230 ASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQR 273
A + Q+ A + P +P Q +
Sbjct: 47 ALGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSK 90
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.7
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 16/42 (38%)
Query: 213 KSIRKSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSA 254
++++K + A L K A ++AP+ +K+
Sbjct: 20 QALKKLQ--ASL------------KLYAD--DSAPALAIKAT 45
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate,
metal BI protein; 1.75A {Bacillus subtilis} SCOP:
b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A
2uya_A 3s0m_A
Length = 385
Score = 27.9 bits (61), Expect = 3.7
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 146 EIAAGGSFSRHAHPDDCRKYYICLEGTAR 174
+ G H HP+ Y + G AR
Sbjct: 263 TVEPGAMRELHWHPNTHEWQYY-ISGKAR 290
>2wsc_D Photosystem I reaction center subunit II, chloroplastic;
photosynthesis, electron transfer, membrane proteins,
large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A
{Spinacia oleracea} PDB: 2wse_D* 2wsf_D* 2o01_D* 3lw5_D*
Length = 212
Score = 27.2 bits (59), Expect = 6.0
Identities = 11/53 (20%), Positives = 17/53 (32%)
Query: 225 PGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRLLPQ 277
P +S P S+ + AA +A +A P + P P
Sbjct: 32 PSAVTFASKPASRLHTIRAAAAAEGKAAAATETKEATKAFTPPELDPNTPSPI 84
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2
d.41.2.2
Length = 449
Score = 27.2 bits (60), Expect = 7.0
Identities = 5/49 (10%), Positives = 10/49 (20%), Gaps = 1/49 (2%)
Query: 12 DFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLH 60
+ + +L L + +L N Y
Sbjct: 57 SLINRTKTVRLAEEIDEMELREQLDHART-LRLSKKENIWLAGNTFYGR 104
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint
for structural genomics, JCSG; 1.65A {Thermotoga
maritima} SCOP: b.82.1.10
Length = 126
Score = 26.3 bits (58), Expect = 7.2
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 146 EIAAGGSFSRHAHPDDCRKYYICLEGTAR 174
+ GG RH+HP + L+G
Sbjct: 54 TVEPGGLIDRHSHPWEH--EIFVLKGKLT 80
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 26.7 bits (59), Expect = 7.3
Identities = 8/61 (13%), Positives = 12/61 (19%), Gaps = 2/61 (3%)
Query: 215 IRKSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIPQRL 274
K + L + PAP PL++ P
Sbjct: 158 FTKEDALKLVQLKQTGKITESRPTPAPTATPTAPSPLQATSGPSYPRPVIPPV--STPGQ 215
Query: 275 L 275
Sbjct: 216 P 216
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis,
resistomycin, metalloprotein, cyclase, lyase; 1.20A
{Streptomyces resistomycificus} PDB: 3ht2_A
Length = 145
Score = 26.5 bits (58), Expect = 7.4
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 146 EIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDGE 190
E++ GS H H + + Y+ LEG+ G ++G GE
Sbjct: 45 EVSPNGSTPPHFHEWE-HEIYV-LEGSMGLVLPDQGRTEEVGPGE 87
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase,
guanylyltransferase, complex, hydrolase, mRNA
processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Length = 461
Score = 27.1 bits (58), Expect = 8.0
Identities = 8/68 (11%), Positives = 20/68 (29%)
Query: 212 LKSIRKSELLAGLPGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQAPSPNRPQQNIP 271
S+ +L + R+ PSQ + S + P +
Sbjct: 391 NDSVSLEDLEEIVGDIKRCWDERRANMAGGSGRPLPSQSQNATLSTSKPVHSQPPSNDKE 450
Query: 272 QRLLPQEE 279
+ + +++
Sbjct: 451 PKYVDEDD 458
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 27.1 bits (59), Expect = 8.2
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 225 PGGNGASSNPRSKQPAPQQEAAPSQPLKSAKSRPQ--APSPNRPQQNIPQRLLPQ 277
P +P + + Q P Q + + Q P+ + Q I Q
Sbjct: 26 PAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family,
metal-binding site, beta barrel, PSI-2, NYSG structural
genomics; 2.00A {Halorhodospira halophila SL1}
Length = 167
Score = 26.5 bits (58), Expect = 8.4
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 146 EIAAGGSFSRHAHPDDCRKYYICLEGTAR 174
E+ GG + H + + G A
Sbjct: 62 EVEPGGYTTLERHEHT--HVVMVVRGHAE 88
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside
deacetylase (MSHB); rossmann fold, zinc aminohydrolase;
HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP:
c.134.1.1 PDB: 1q7t_A*
Length = 303
Score = 26.5 bits (58), Expect = 9.8
Identities = 17/70 (24%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
Query: 156 HAHPDDCRKYYICLEGTAREY---GCPIGTVFKIGDGEGTGNCEDPEEVPGEDYYGDLDL 212
HAHPDD + T Y G + V GE + L
Sbjct: 11 HAHPDDES---LSNGATIAHYTSRGAQVHVVT-CTLGEEGEV--IGDRWAQLTADHADQL 64
Query: 213 KSIRKSELLA 222
R EL A
Sbjct: 65 GGYRIGELTA 74
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural
genomics, PSI-2, protein structur initiative; 1.85A
{Rhodopseudomonas palustris}
Length = 156
Score = 26.1 bits (57), Expect = 9.8
Identities = 5/29 (17%), Positives = 9/29 (31%), Gaps = 2/29 (6%)
Query: 146 EIAAGGSFSRHAHPDDCRKYYICLEGTAR 174
E+ GG + H + G +
Sbjct: 50 EVDEGGYSTLERHAHV--HAVMIHRGHGQ 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.137 0.451
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,631,283
Number of extensions: 281195
Number of successful extensions: 524
Number of sequences better than 10.0: 1
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 66
Length of query: 281
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 189
Effective length of database: 4,133,061
Effective search space: 781148529
Effective search space used: 781148529
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.3 bits)