RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13460
         (281 letters)



>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus
          tridentatus) [TaxId: 6853]}
          Length = 73

 Score = 48.8 bits (116), Expect = 1e-08
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 9  CPDDFGFYPHHISCDKYWKCDGREAELKTCGNGLAFDDTDPKYLKENCDYLHNVDCGSRS 68
          C DD G   +  SC  ++ C    A L+ C  GL ++        + CD+     C S +
Sbjct: 12 CLDD-GPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAY-----LKVCDWPSKAGCTSVN 65

Query: 69 Q 69
          +
Sbjct: 66 K 66



 Score = 41.1 bits (96), Expect = 6e-06
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 84  GIFPDEVKCDVFWNCWNGESSRYQCSPGLAYDREARVCMWADQV 127
           G   +   C  F+NC    +    C  GL Y+   +VC W  + 
Sbjct: 16  GPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKA 59



 Score = 40.7 bits (95), Expect = 9e-06
 Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 7/64 (10%)

Query: 138 GFNCPAAGEIAAGGSFSRHAHPDDCRKYYICLEGTAREYGCPIGTVFKIGDGEGTGNCED 197
            F C         G      +   C  +Y C +  AR   CP G  +          C+ 
Sbjct: 3   AFRCGRYSPCLDDGPN---VNLYSCCSFYNCHKCLARLENCPKGLHYN----AYLKVCDW 55

Query: 198 PEEV 201
           P + 
Sbjct: 56  PSKA 59


>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig
           (Sus scrofa) [TaxId: 9823]}
          Length = 109

 Score = 26.9 bits (58), Expect = 1.5
 Identities = 9/63 (14%), Positives = 15/63 (23%)

Query: 47  TDPKYLKENCDYLHNVDCGSRSQLEPPVSTPKCPRLYGIFPDEVKCDVFWNCWNGESSRY 106
              K  K  C +   VD   +  +  P     C + Y    +          +    S  
Sbjct: 18  FTYKGPKTECVWTLQVDPKYKLLVSIPTLNLTCGKEYVEVLEGAPGSKSLGKFCEGLSIL 77

Query: 107 QCS 109
              
Sbjct: 78  NRG 80


>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig
           (Sus scrofa) [TaxId: 9823]}
          Length = 112

 Score = 26.1 bits (56), Expect = 2.2
 Identities = 6/62 (9%), Positives = 18/62 (29%)

Query: 47  TDPKYLKENCDYLHNVDCGSRSQLEPPVSTPKCPRLYGIFPDEVKCDVFWNCWNGESSRY 106
           ++    K  C +   +    + ++  P     C + Y    D +     +      ++  
Sbjct: 21  SNTDRQKNLCTWTILMKPDQKVRMAIPYLNLACGKEYVEVFDGLLSGPSYGKLCAGAAIV 80

Query: 107 QC 108
             
Sbjct: 81  FL 82


>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 146

 Score = 25.6 bits (55), Expect = 5.0
 Identities = 12/109 (11%), Positives = 23/109 (21%), Gaps = 7/109 (6%)

Query: 44  FDDTDPKYLKENCDYLHNVDCGSRSQLEPPVSTPKCP----RLYGIFPDEVKC---DVFW 96
            D+    YL++N     +         E    + +        +G  P    C    V W
Sbjct: 13  VDENFSWYLEDNIKTYCSEPEKVDKDNEDFQESNRMYSVNGYTFGSLPGLSMCAEDRVKW 72

Query: 97  NCWNGESSRYQCSPGLAYDREARVCMWADQVPECKIEEVANGFNCPAAG 145
             +   +     +               D +                 G
Sbjct: 73  YLFGMGNEVDVHAAFFHGQALTNKNYRIDTINLFPATLFDAYMVAQNPG 121


>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 481

 Score = 25.5 bits (55), Expect = 7.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 234 PRSKQPAPQQEAAPSQPLKSAKSRPQAP 261
           PR+ +P P+     S PLKS   RP  P
Sbjct: 453 PRNPKPLPRFPKKYSYPLKSPGVRPSNP 480


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.137    0.451 

Gapped
Lambda     K      H
   0.267   0.0553    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,187,323
Number of extensions: 60025
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 15
Length of query: 281
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,254,276
Effective search space: 247092372
Effective search space used: 247092372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.2 bits)