BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13461
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
Length = 649
Score = 29.6 bits (65), Expect = 1.2, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 110 KKYTPAFEAKDRQRMNKASKELIEKRRKLFKQ-----------FEELREKLRETWEAEKE 158
K+Y P KDRQR E+ EK R++++ F E+RE+ + EA +E
Sbjct: 346 KEYRPVQTLKDRQRYTLP--EMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALRE 403
Query: 159 ERKYLRNL 166
+ L L
Sbjct: 404 AARILAEL 411
>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex
pdb|1NNE|B Chain B, Crystal Structure Of The Muts-adpbef3-dna Complex
Length = 765
Score = 29.6 bits (65), Expect = 1.2, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 110 KKYTPAFEAKDRQRMNKASKELIEKRRKLFKQ-----------FEELREKLRETWEAEKE 158
K+Y P KDRQR E+ EK R++++ F E+RE+ + EA +E
Sbjct: 462 KEYRPVQTLKDRQRYTLP--EMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALRE 519
Query: 159 ERKYLRNL 166
+ L L
Sbjct: 520 AARILAEL 527
>pdb|4FIX|A Chain A, Crystal Structure Of Glft2
pdb|4FIX|B Chain B, Crystal Structure Of Glft2
pdb|4FIY|A Chain A, Crystal Structure Of Glft2 Complexed With Udp
pdb|4FIY|B Chain B, Crystal Structure Of Glft2 Complexed With Udp
Length = 657
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 116 FEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKEERKY 162
+ +DR +M + + ++R+L K+FEE+R R+ ++K+
Sbjct: 596 YRQRDRAKMFALLWQSLRRQRQLLKRFEEMRRIYRDALPTLSSKQKW 642
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 110 KKYTPAFEAKDRQRMNKASKELIEK---------RRKLFKQFEELREKLRETWEAEKEER 160
K+Y P KDRQR + E+ RR+ + F E+RE+ + EA +E
Sbjct: 462 KEYRPVQTLKDRQRYTLPEXKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAA 521
Query: 161 KYLRNL 166
+ L L
Sbjct: 522 RILAEL 527
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 110 KKYTPAFEAKDRQRMNKASKELIEK---------RRKLFKQFEELREKLRETWEAEKEER 160
K+Y P KDRQR + E+ RR+ + F E+RE+ + EA +E
Sbjct: 462 KEYRPVQTLKDRQRYTLPEXKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAA 521
Query: 161 KYLRNL 166
+ L L
Sbjct: 522 RILAEL 527
>pdb|2B51|A Chain A, Structural Basis For Utp Specificity Of Rna Editing
Tutases From Trypanosoma Brucei
pdb|2B56|A Chain A, Structural Basis For Utp Specificity Of Rna Editing
Tutases From Trypanosoma Brucei
Length = 468
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 91 PRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLR 150
P P+ + ++ DK++ +K+Y P + + + +A +++ R F E++ + R
Sbjct: 88 PYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLR---FANDEKV-ARAR 143
Query: 151 ETWEAEKEERKYLRNLVDT 169
T +E+E+RK L+D
Sbjct: 144 YTPLSEEEDRKARTALLDV 162
>pdb|2B4V|A Chain A, Structural Basis For Utp Specificity Of Rna Editing
Tutases From Trypanosoma Brucei
Length = 468
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 91 PRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLR 150
P P+ + ++ DK++ +K+Y P + + + +A +++ R F E++ + R
Sbjct: 88 PYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLR---FANDEKV-ARAR 143
Query: 151 ETWEAEKEERKYLRNLVDT 169
T +E+E+RK L+D
Sbjct: 144 YTPLSEEEDRKARTALLDV 162
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 27.7 bits (60), Expect = 4.5, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 118 AKDRQRMNKASKELIEKRRKLFKQFEELREKLRET 152
A D Q ++ KE++ RR L K+ EE+ K + +
Sbjct: 659 ADDSQENDEPCKEILRPRRTLQKKIEEIAAKYKHS 693
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 27.7 bits (60), Expect = 4.5, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 118 AKDRQRMNKASKELIEKRRKLFKQFEELREKLRET 152
A D Q ++ KE++ RR L K+ EE+ K + +
Sbjct: 659 ADDSQENDEPCKEILRPRRTLQKKIEEIAAKYKHS 693
>pdb|3SBY|A Chain A, Crystal Structure Of Semet-Substituted Apo-Mmachc (1-244),
A Human B12 Processing Enzyme
pdb|3SBY|B Chain B, Crystal Structure Of Semet-Substituted Apo-Mmachc (1-244),
A Human B12 Processing Enzyme
Length = 252
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 30 VMNAAEHHQATDVEWDPTGRYVMSGVSL 57
V AA ++Q DVE DP G +SGV +
Sbjct: 123 VAGAAYYYQRQDVEADPWGNQRISGVCI 150
>pdb|1GJU|A Chain A, Maltosyltransferase From Thermotoga Maritima
pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase Complex With
Maltose
Length = 637
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 5/38 (13%)
Query: 97 LSKEQVDKIKKSLKKYTPAF----EAKDRQRMNKASKE 130
L KE +D I K++K+Y PAF E D ++ +KASKE
Sbjct: 390 LPKELLDLIIKNVKEYDPAFVMIAEELDMEK-DKASKE 426
>pdb|3SOM|A Chain A, Crystal Structure Of Human Mmachc
pdb|3SOM|B Chain B, Crystal Structure Of Human Mmachc
pdb|3SOM|C Chain C, Crystal Structure Of Human Mmachc
pdb|3SOM|D Chain D, Crystal Structure Of Human Mmachc
pdb|3SOM|E Chain E, Crystal Structure Of Human Mmachc
pdb|3SOM|F Chain F, Crystal Structure Of Human Mmachc
pdb|3SOM|G Chain G, Crystal Structure Of Human Mmachc
pdb|3SOM|H Chain H, Crystal Structure Of Human Mmachc
pdb|3SOM|I Chain I, Crystal Structure Of Human Mmachc
pdb|3SOM|J Chain J, Crystal Structure Of Human Mmachc
pdb|3SOM|K Chain K, Crystal Structure Of Human Mmachc
pdb|3SOM|L Chain L, Crystal Structure Of Human Mmachc
pdb|3SOM|M Chain M, Crystal Structure Of Human Mmachc
pdb|3SOM|N Chain N, Crystal Structure Of Human Mmachc
pdb|3SOM|O Chain O, Crystal Structure Of Human Mmachc
pdb|3SOM|P Chain P, Crystal Structure Of Human Mmachc
Length = 286
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 30 VMNAAEHHQATDVEWDPTGRYVMSGVSL 57
V AA ++Q DVE DP G +SGV +
Sbjct: 127 VAGAAYYYQRQDVEADPWGNQRISGVCI 154
>pdb|3SBZ|A Chain A, Crystal Structure Of Apo-Mmachc (1-244), A Human B12
Processing Enzyme
Length = 252
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 30 VMNAAEHHQATDVEWDPTGRYVMSGVSL 57
V AA ++Q DVE DP G +SGV +
Sbjct: 123 VAGAAYYYQRQDVEADPWGNQRISGVCI 150
>pdb|3SC0|A Chain A, Crystal Structure Of Mmachc (1-238), A Human B12
Processing Enzyme, Complexed With Methylcobalamin
Length = 241
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 30 VMNAAEHHQATDVEWDPTGRYVMSGVSL 57
V AA ++Q DVE DP G +SGV +
Sbjct: 126 VAGAAYYYQRQDVEADPWGNQRISGVCI 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,475,107
Number of Sequences: 62578
Number of extensions: 219213
Number of successful extensions: 867
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 56
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)