RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13461
(194 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 1e-05
Identities = 37/217 (17%), Positives = 69/217 (31%), Gaps = 66/217 (30%)
Query: 8 HIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEW---DPTGRYVMSGVSLWKTKAD- 63
+ ++L++ +F + T+ +PT + L
Sbjct: 27 FFIASQLQE----QFNKI----------LPEPTEGFAADDEPT-----TPAELV---GKF 64
Query: 64 TGY----WQWSFQGK-------IIKRFNSPTFCQLRWRP---RPASLLSKEQ--VDKIKK 107
GY + S G+ + F + + L A LL + + K K+
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFEN-CY--LEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 108 SLKKYTPAFEAKDRQRMNKASKELIE----KRRKLFKQF----------EELREKLRETW 153
+K Y A R K++ L +L F EELR+ L +T+
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD-LYQTY 180
Query: 154 EAEKEE-----RKYLRNLVDTDELDSENVEEEVVEFV 185
+ + L L+ LD+E V + + +
Sbjct: 181 HVLVGDLIKFSAETLSELI-RTTLDAEKVFTQGLNIL 216
Score = 38.9 bits (90), Expect = 8e-04
Identities = 36/153 (23%), Positives = 52/153 (33%), Gaps = 55/153 (35%)
Query: 29 SVMNAAEHHQATDVEWDPTGRYVMSG--VSLW-------KTKADTGYWQWS--FQG---K 74
S++N A++ V+SG SL+ K KA +G Q F K
Sbjct: 369 SLVNGAKN-------------LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 75 IIKRFNSPTFCQLRWRPRP--ASLLSKEQVDKIKKSLKKYTPAFEAKDRQ---------- 122
RF P P + LL D I K L K +F AKD Q
Sbjct: 416 FSNRFL-PVAS-------PFHSHLL-VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 123 RMNKASKELIEKRRKLFKQFEELREKLRETWEA 155
+ S + E ++ +R ++ WE
Sbjct: 467 DLRVLSGSISE---RIVDCI--IRLPVK--WET 492
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.9 bits (97), Expect = 2e-05
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 6/26 (23%)
Query: 99 KEQVDKIKKSLKKYTP------AFEA 118
K+ + K++ SLK Y A +A
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.005
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 13/82 (15%)
Query: 124 MNKASK-ELIEKRRKLFKQFEELREKLRET---WEAEKEE-------RKYLRNLVDTDEL 172
+ E + R +F F L +K+R W A + Y + D D
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 173 DSENVEEEVVEFVIK-EEITIC 193
V +++F+ K EE IC
Sbjct: 541 YERLV-NAILDFLPKIEENLIC 561
Score = 31.7 bits (71), Expect = 0.17
Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 49/150 (32%)
Query: 63 DTGYWQWSFQGKIIKRFNSPTF-----CQ-----LRWRPRPASLLSKEQVDKIKKSLKKY 112
+TG Q+ ++ I+ F F C+ + S+LSKE++D I
Sbjct: 10 ETGEHQYQYK-DILSVF-EDAFVDNFDCKDVQDMPK------SILSKEEIDHI------- 54
Query: 113 TPAFEAKDR-QRMNKASKELIEKRRKLFKQF-EELREK----LRETWEAE---------- 156
+KD + L+ K+ ++ ++F EE+ L + E
Sbjct: 55 ---IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 157 -KEERKYLRNLVDTDELDSENV--EEEVVE 183
E+R L N D NV + ++
Sbjct: 112 YIEQRDRLYN--DNQVFAKYNVSRLQPYLK 139
Score = 31.4 bits (70), Expect = 0.23
Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 75/227 (33%)
Query: 8 HIVLAELRDTGSLEFVDT----GDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKA- 62
HI++++ +G+L T + V E + ++ +MS KT+
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF------LMSP---IKTEQR 103
Query: 63 DTGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTP-------- 114
+ + + +N R + K++++L + P
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL------QPYLKLRQALLELRPAKNVLIDG 157
Query: 115 ---------AFEA----KDRQRMN-----------KASKELIEKRRKLFKQF-------- 142
A + K + +M+ + + ++E +KL Q
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 143 ----------EELREKLRETWEAEKEERKYLRNLVDTDEL-DSENVE 178
++ +LR + + Y L+ + +++
Sbjct: 218 DHSSNIKLRIHSIQAELRRLL----KSKPYENCLLVLLNVQNAKAWN 260
Score = 27.5 bits (60), Expect = 3.4
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 100 EQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKEE 159
E + K L + AF + K++ + + + + EE+ + +
Sbjct: 13 EHQYQYKDILSVFEDAF-VDNFD-----CKDVQDMPKSILSK-EEIDHIIMS---KDAVS 62
Query: 160 RKYLRNLVDTDELDSENVEEEVVEFVIK 187
L T E + ++ VE V++
Sbjct: 63 GTLR--LFWTLLSKQEEMVQKFVEEVLR 88
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR
{Saccharomyces cerevisiae}
Length = 119
Score = 34.3 bits (78), Expect = 0.007
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 8/51 (15%)
Query: 109 LKKYTPAFEAKDRQRMNKASKELIEK--------RRKLFKQFEELREKLRE 151
L KY+ A + E +EK RRKL K F + +
Sbjct: 61 LHKYSDALSGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKER 111
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA
binding protein; 1.60A {Saccharomyces cerevisiae} PDB:
2f8k_A 2fe9_A
Length = 88
Score = 32.6 bits (74), Expect = 0.015
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 8/51 (15%)
Query: 109 LKKYTPAFEAKDRQRMNKASKELIEK--------RRKLFKQFEELREKLRE 151
L KY+ A + E +EK RRKL K F + +
Sbjct: 30 LHKYSDALSGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKER 80
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR
{Saccharomyces cerevisiae} PDB: 2ese_A
Length = 101
Score = 32.7 bits (74), Expect = 0.021
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 8/51 (15%)
Query: 109 LKKYTPAFEAKDRQRMNKASKELIEK--------RRKLFKQFEELREKLRE 151
L KY+ A + E +EK RRKL K F + +
Sbjct: 43 LHKYSDALSGTPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVIDYKER 93
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 33.7 bits (78), Expect = 0.037
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 126 KASKELIEKRRKLFKQFEELREKLRETWEAEKEERKYLRNLVDTDELDSENVEEEVVE 183
S+E ++ + E KLR WE E+E + LR LD E E+ E
Sbjct: 426 PDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREA--QHRLDEVRREIELAE 481
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 32.6 bits (74), Expect = 0.040
Identities = 14/68 (20%), Positives = 27/68 (39%)
Query: 126 KASKELIEKRRKLFKQFEELREKLRETWEAEKEERKYLRNLVDTDELDSENVEEEVVEFV 185
++E + +R L K+ E++ E+ E E + + R +T L N+ + V
Sbjct: 109 WTNREELLRRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK 168
Query: 186 IKEEITIC 193
C
Sbjct: 169 TNPRFIFC 176
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.095
Identities = 8/69 (11%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 99 KEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAE-- 156
++ + I+K ++ + D +E EK +K +++ + + + E +
Sbjct: 81 TQEPESIRKWREEQRKRLQELDAAS-KVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 157 KEERKYLRN 165
++ + +
Sbjct: 140 IADKAFYQQ 148
Score = 29.7 bits (66), Expect = 0.37
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 88 RWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELRE 147
+WR +EQ +K L++ A + +++ KA K+L E ++ +Q E+ +
Sbjct: 89 KWR--------EEQ----RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
Query: 148 KLRETWEAEKEERK 161
R +A ++
Sbjct: 137 NNRIADKAFYQQPD 150
Score = 29.7 bits (66), Expect = 0.46
Identities = 9/63 (14%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 129 KELIEKRRKLFKQFEELREKLRETW--EAEKEERKYLRNLVDTDELDSENVEEEVVEFVI 186
++ E++RK ++ + + + + W +A+K+ ++ + + E + N F
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
Query: 187 KEE 189
+ +
Sbjct: 148 QPD 150
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 32.4 bits (74), Expect = 0.10
Identities = 13/70 (18%), Positives = 27/70 (38%)
Query: 119 KDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKEERKYLRNLVDTDELDSENVE 178
K+ + K + E K + E+L +L+E K E++ L + +
Sbjct: 998 KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETM 1057
Query: 179 EEVVEFVIKE 188
E+ + K+
Sbjct: 1058 EKKLVEETKQ 1067
Score = 30.8 bits (70), Expect = 0.26
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 86 QLRWRPRPASLLSKEQVDKIKK--SLKKYTPAFEAKDR------QRMNKASKELIEKRRK 137
Q +R A K+ + + KK E K NK K L+EK
Sbjct: 894 QCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953
Query: 138 LFKQFEELREKLR---ETWEAEKEERKYLRNLVDTDELDSENVEEEVVE 183
L + EKLR E +EE K N V + + + + +E+ +
Sbjct: 954 LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002
Score = 29.3 bits (66), Expect = 0.94
Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 99 KEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKE 158
E+++ ++ + T D +R+ + +E ++ +E KLR+ +
Sbjct: 948 LEKMNNLEITYSTETEKLR-SDVERLRMSEEEAKNATNRV-LSLQEEIAKLRKELHQTQT 1005
Query: 159 ERKYLRNLVD--TDELDSENVEEEVVEFVIKEEI 190
E+K + D E + E + ++K E
Sbjct: 1006 EKKTIEEWADKYKHETEQLVSELKEQNTLLKTEK 1039
>1twf_A B220, DNA-directed RNA polymerase II largest subunit;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB:
1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A
1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A*
1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 32.0 bits (72), Expect = 0.13
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 94 ASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETW 153
A+ + K+ +D I S + + D + + + +L+ L E +
Sbjct: 875 AAHIEKQSLDTIGGSDAAFEKRY-RVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEY 933
Query: 154 EAEKEERKYLRNLVDTDE 171
+ ++RK+LR + E
Sbjct: 934 KQLVKDRKFLREVFVDGE 951
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A
{Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Length = 173
Score = 30.8 bits (69), Expect = 0.16
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 109 LKKYTPAFEAKDRQRMNKASKELIEK-------RRKLFKQFEELREKLRETWEAEKE 158
L KY F+ + M +++ ++ KL ++L+E+ E+E
Sbjct: 19 LHKYIELFKNMTYEEMLLITEDFLQSVGVTKGASHKLALCIDKLKERANILNRVEQE 75
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 31.2 bits (71), Expect = 0.23
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 109 LKKYTPAFEAKDR--QRMNKASKELIEKRRKLFKQFEELREK---LRETWEAEKEERKYL 163
K + ++ ++ + + A + LI ++R+ E+L E E AEK
Sbjct: 234 FFKISWLYKKYEKSVKDLKDAIEVLIAEKRRRISTEEKLEECMDFATELILAEKR----- 288
Query: 164 RNLVDTDELDSENVEEEVVEFVI 186
+L ENV + ++E +I
Sbjct: 289 ------GDLTRENVNQCILEMLI 305
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 30.7 bits (68), Expect = 0.32
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 8/89 (8%)
Query: 10 VLAELRDTGSLEFVDTGDFSVMNAAEHH--QATDVEWDPTGRYVMSGVSLWKTKADTGYW 67
++A GS+ + + + A T V W P G+ + G K +
Sbjct: 164 MVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVG------KQNGTVV 217
Query: 68 QWSFQGKIIKRFNSPTFCQLRWRPRPASL 96
Q+ + K P F + R +
Sbjct: 218 QYLPTLQEKKVIPCPPFYESDHPVRVLDV 246
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 30.3 bits (69), Expect = 0.39
Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 99 KEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKE 158
+ ++L +KD + ++ R+L +Q L E+ +E +
Sbjct: 47 CAYPEDAARALDLRKGELRSKDLPGI----ISTWQELRQLREQIRSLEEE-KE--AVTEA 99
Query: 159 ERKYLRNLVDTDELDSENVEEEVVEF-VIKEEITICE 194
R + N ++ + I++++T+
Sbjct: 100 VRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLY 136
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A
{Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Length = 844
Score = 30.1 bits (67), Expect = 0.48
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 30 VMNAAEHHQATDVEWDPTGRYVMSGVS-----LWKTKADTGYWQWSFQGKIIKRFNSPTF 84
+ E T D G V + K+ Q + G ++ + +
Sbjct: 718 MYALPEKEVVTATRVDKYGTPVAGSQIKNTLYVVDGKSSGKDQQAKYGGAFLEELQA-KY 776
Query: 85 CQLRWRPRPASLLSKEQVDKIKKSLKKY 112
+L R + ++ + + KIK+ KY
Sbjct: 777 PELFARKQISTGVPMDPSVKIKQWSAKY 804
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.8 bits (67), Expect = 0.57
Identities = 9/67 (13%), Positives = 26/67 (38%)
Query: 117 EAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKEERKYLRNLVDTDELDSEN 176
E + Q++ K++ ++ L +Q EE ++ + ++ + D + +
Sbjct: 939 EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ 998
Query: 177 VEEEVVE 183
+ E
Sbjct: 999 NNKLTKE 1005
Score = 28.3 bits (63), Expect = 2.0
Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 99 KEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQ---FEELREKLRETWEA 155
++Q+ +++ L++ E RQ++ K +K+ E+ KL + +
Sbjct: 954 QQQMLDLEEQLEE-----EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL 1008
Query: 156 EKEERKYLRNLVDTDELDSENVEEEVVEF 184
+E L + +E ++N+ + +
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
Score = 26.7 bits (59), Expect = 7.0
Identities = 12/83 (14%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 117 EAKDRQRMNKASKELIEKRRKLFKQFEELREKL----RETWEAEKEERKY------LRNL 166
E + + L K+++L + E+ ++ + + + E++K L
Sbjct: 904 ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
Query: 167 VDTDELDSENVEEEVVEFVIKEE 189
++ +E + ++ E V K +
Sbjct: 964 LEEEEAARQKLQLEKVTADGKIK 986
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 28.9 bits (65), Expect = 0.64
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 126 KASKELIEKR---RK--LFKQFEELREKLRETWEAEKEERKYLRNLVDTDELDSENVEEE 180
A +I+KR R + + + + E + DT + S+ + ++
Sbjct: 102 HADPSVIKKRLRVRGDEYIE--GKDIDSILELYREVMSNAGLHTYSWDTGQWSSDEIAKD 159
Query: 181 VVEFV 185
++ V
Sbjct: 160 IIFLV 164
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA
polymerase, stringent response, PPGPP, riken structural
genomics/proteomics initiative; 2.00A {Escherichia coli}
SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Length = 151
Score = 28.4 bits (63), Expect = 0.90
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 106 KKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKEERKYLRN 165
++ P E + MN+ +L RR L +LR+++ T ++E +
Sbjct: 14 ILAIAGVEPYQEKPGEEYMNE--AQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPD 71
Query: 166 LVDTDELDSENVEEEVVEFVIKEEI 190
VD + E E ++ I
Sbjct: 72 PVDRAAQEEEFSLELRNRDRERKLI 96
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 29.2 bits (66), Expect = 1.00
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 122 QRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKEERKYLRNLV 167
+ + ++EL+ + + E +E+L + ERK L N V
Sbjct: 13 VHLRQRTEELLRCNEQQAAELETCKEQLFQ----SNMERKELHNTV 54
Score = 26.8 bits (60), Expect = 4.7
Identities = 6/52 (11%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 99 KEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLR 150
+++ +++ + ++ A + + + + +R++L +LR+ +R
Sbjct: 16 RQRTEELLRCNEQQ-----AAELETCKEQLFQSNMERKELHNTVMDLRDNIR 62
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 28.8 bits (64), Expect = 1.3
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 16/74 (21%)
Query: 120 DRQRMNKASKELIEKRRKLFK-----QFEELREKLRETWEAEKEERK-----YL---RNL 166
D + SK + E RR FK +ELR + R+ + E RK L RN
Sbjct: 2 DNGTDSSTSKFVPEYRRTNFKNKGRFSADELRRR-RD--TQQVELRKAKRDEALAKRRNF 58
Query: 167 VDTDELDSENVEEE 180
+ + + E+E
Sbjct: 59 IPPTDGADSDEEDE 72
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase;
UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A
biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis}
PDB: 2iu9_A* 2iua_A*
Length = 374
Score = 28.8 bits (65), Expect = 1.3
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 105 IKKSLKK---Y--TPAFEAKDRQRMNKASKEL--IEKR-RKLFKQFEELREKLRE 151
+ KS+ Y PA ++ R + L +E+R L K ++L +
Sbjct: 319 VTKSITSPGIYGGAPARPYQEIHRQVAKVRNLPRLEERIAALEKLVQKLEALSEQ 373
>2v0p_A TAP42, type 2A phosphatase-associated protein 42; phosphorylation,
signal transduction inhibitor, hydrolase in; 1.80A
{Saccharomyces cerevisiae}
Length = 234
Score = 28.2 bits (62), Expect = 1.5
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 20/112 (17%)
Query: 96 LLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKL----FKQFEELREKLRE 151
LL +K+ +Y P Q N + +RK F++ +E+ KL
Sbjct: 123 LLDPLVGEKLGNFKDRYNPQLSELYAQPKNNKDLSGAQLKRKEKIELFQRNKEISTKLHC 182
Query: 152 TWEA----------EKEERKYLRNLVDT------DELDSENVEEEVVEFVIK 187
++ R+ + + ++ E E++ +K
Sbjct: 183 LELELKNNDEDHDHDELLRELYLMRLHHFSLDTINNIEQNLFECEMLSNFLK 234
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 28.0 bits (62), Expect = 1.5
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 126 KASKELIEKR---RKLFKQFEELREKLRETWEAEKEERKYLRNLVDTDELDSENVEEEVV 182
A ++ +R + E E+ + +DT L ++ V E++
Sbjct: 112 IAPLNVVLERLRRDGQPQVNVGTVEDRLNELRGEQFQTH-----IDTAGLGTQQVAEQIA 166
Query: 183 EFV 185
V
Sbjct: 167 AQV 169
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.4 bits (64), Expect = 1.7
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 17/76 (22%)
Query: 121 RQRMNKASKE-------------LIEKRRKLFKQFEELREKLRETWEAEKEERKYLRNLV 167
+++N KE LI ++ KL + +E+ EK E + + + + N+V
Sbjct: 53 NKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIV 112
Query: 168 DTD----ELDSENVEE 179
+ + N
Sbjct: 113 HESVVDSQDEENNELV 128
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 28.1 bits (63), Expect = 1.8
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 9/60 (15%)
Query: 23 VDTGDFSVMNAAEHHQA--TDVEW--DPTGRYVMSG-----VSLWKTKADTGYWQWSFQG 73
+ G +S + H A V+W G ++ VS+ + K +
Sbjct: 86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA 145
Score = 26.5 bits (59), Expect = 6.0
Identities = 5/39 (12%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 40 TDVEWDPTGRYVMSG-----VSLWKTKADTGYWQWSFQG 73
D D G+ + + + +++ + +T + G
Sbjct: 15 HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG 53
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 28.0 bits (63), Expect = 1.8
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 122 QRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKEERKYLRNLV 167
+ + L EK + +EL E L + E+ R+ L N +
Sbjct: 13 AALKEKIAALKEKIKDTELGMKELNEILIK----EETVRRTLHNEL 54
Score = 26.8 bits (60), Expect = 4.8
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 99 KEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLR 150
KE++ +K+ +K + +N+ + RR L + +ELR +R
Sbjct: 16 KEKIAALKEKIKDT-----ELGMKELNEILIKEETVRRTLHNELQELRGNIR 62
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP
binding site AN site being FAR from EACH other,
structural genomics, PSI; HET: GDP; 2.00A {Aquifex
aeolicus} SCOP: a.211.1.1
Length = 371
Score = 27.9 bits (62), Expect = 2.0
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 123 RMNKASKELIEK--RRKLFKQFEELREKLRETWEAEKEERKYLRNLVDTDELDSENVEEE 180
KA +E E+ +RK FK + + E+ K+ + V DE++ E
Sbjct: 265 FKRKAFREDFERIFQRKHFKTLLSTENYEKFSETKERLLEKFPQEKVRFDEVEKEVYGGN 324
Query: 181 V 181
+
Sbjct: 325 I 325
>3fdx_A Putative filament protein / universal stress PROT; structural
genomics, APC60640.1, universal protein F, PSI-2; HET:
MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB:
3fh0_A*
Length = 143
Score = 27.2 bits (61), Expect = 2.0
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 154 EAEKEERKYLRNLVDTDELDSENVEEEVVEFVIKEEI 190
E + L+ + + + + V E K++I
Sbjct: 62 ELREGSETQLKEIAKKFSIPEDRMHFHVAEGSPKDKI 98
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 27.9 bits (61), Expect = 2.2
Identities = 13/96 (13%), Positives = 27/96 (28%)
Query: 99 KEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKE 158
E V ++++ +Y E + + KQ E R E +E
Sbjct: 129 NEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQE 188
Query: 159 ERKYLRNLVDTDELDSENVEEEVVEFVIKEEITICE 194
+ V +++E V + +
Sbjct: 189 AEALYQACVREANARQQDLEIAKQRIVSHVRKLVFQ 224
>2ex3_B Protein GP3, DNA terminal protein; DNA polymerase: protein primer
complex, transferase-replicat complex; HET: DNA; 3.00A
{Bacillus phage PHI29} SCOP: a.263.1.1
Length = 230
Score = 27.9 bits (61), Expect = 2.2
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 98 SKEQVDKIKKSLKKYT-PAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAE 156
S ++ +++S++ T P + K ++ + +E F +EL E+L++ +
Sbjct: 119 SYSRLRTLEESMEMRTDPQYYEKKMIQLQLNFIKSVEGSFNSFDAADELIEELKKIPPDD 178
Query: 157 KEERKYLRNLVDTDELDSENVEEEVVEFVIKE 188
E + + +E DSE E VE + +
Sbjct: 179 FYELFLRISEISFEEFDSEGNTVENVEGNVYK 210
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2,
transferase, AAA protein family; HET: DNA; NMR {Homo
sapiens}
Length = 99
Score = 26.6 bits (58), Expect = 2.5
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 121 RQRMNKASKELIEKRRKLFKQF---------EELREKLRETWEAEKEERKYLRNLVDTDE 171
R +++ A + L + FK + L E L+ E E E+ L +++ E
Sbjct: 20 RLQVDMAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELED--KLEKIINAVE 77
Query: 172 ---LDSENVEEEVVEFVIKE 188
L S +E VVE ++E
Sbjct: 78 KQPLSSNMIERSVVEAAVQE 97
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein,
RNA splicing, structural GENO joint center for
structural genomics, JCSG; HET: MSE; 1.80A {Mus
musculus} PDB: 1o0p_A 1opi_A
Length = 105
Score = 26.7 bits (59), Expect = 2.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 163 LRNLVDTDELDSENVEEEVVEFVIKE 188
L N+V +EL + EE+VE V E
Sbjct: 10 LMNMVLPEELLDDEEYEEIVEDVRDE 35
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein,
kinesin motor homology domain, karyog mitosis,
microtubules; HET: ADP EBC; 2.30A {Saccharomyces
cerevisiae} PDB: 1u0i_A
Length = 333
Score = 27.6 bits (60), Expect = 3.0
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 98 SKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLR 150
++K +L+K E N KEL+ + R+L E + +R
Sbjct: 11 EIAALEKEIAALEKEISKQEKFYNDTYNTVCKELL-RSRRLENSIIEQKGTMR 62
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class
I, activator, RNA polymeras holoenzyme, sigma70, open
complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia
coli k-12}
Length = 613
Score = 27.7 bits (61), Expect = 3.2
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 97 LSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLF-------KQFEELREKL 149
L++E+ +++ +AK R ++E I K ++F KQF+ L +
Sbjct: 216 LAREKFAELRAQYVVTRDTIKAKGRSH--ATAQEEILKLSEVFKQFRLVPKQFDYLVNSM 273
Query: 150 RETWEA-EKEERKYLRNLVDTDELDSE 175
R + +ER ++ V+ ++ +
Sbjct: 274 RVMMDRVRTQERLIMKLCVEQCKMPKK 300
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 27.6 bits (61), Expect = 3.3
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 130 ELIEKRRKLFKQFEELREKLRETWEAEKEER-------KYLRNLVDTDELDSENVEEEVV 182
LI + + K E+ E+++ + R +++ D D ++ +
Sbjct: 895 GLIFEHNRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFF 954
Query: 183 EFVIKEE 189
F +E+
Sbjct: 955 TFAQREQ 961
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos
taurus} PDB: 3a7u_A
Length = 347
Score = 27.2 bits (60), Expect = 3.6
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Query: 95 SLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWE 154
+LL + LK + K L+EK L E + + +
Sbjct: 153 TLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLT--CEVVINAVATEYA 210
Query: 155 AEKEERKYLRNLVDTDELDSENVEEEVVEF 184
+ ++ + TDE + + +E
Sbjct: 211 TSHQIDNHIHLINPTDETVFPGINSKAIEL 240
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 27.2 bits (61), Expect = 3.7
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 8/46 (17%)
Query: 35 EHHQA--TDVEWDPTGRYVMSG-----VSLWKTKADTGYWQWSFQG 73
E W +G + V+LWK + G W+ + +
Sbjct: 251 EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE-GKWEPAGEV 295
Score = 26.0 bits (58), Expect = 8.4
Identities = 5/39 (12%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 40 TDVEWDPTGRYVMSG-----VSLWKTKADTGYWQWSFQG 73
D D G+ + + + +++ + +T + G
Sbjct: 13 HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG 51
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for
structural genomics of infec diseases, NADE, CSGI; 2.74A
{Campylobacter jejuni}
Length = 249
Score = 27.1 bits (61), Expect = 3.7
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 161 KYLRNLVDTDELDSENVEEEVVEFVIK 187
+ L+ L DE ++ ++ +
Sbjct: 206 EGLKALETNDEKLLRTLDPSLIAMLKN 232
>3nuz_A Putative acetyl xylan esterase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; 2.30A {Bacteroides fragilis}
Length = 398
Score = 27.0 bits (59), Expect = 4.1
Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 21/113 (18%)
Query: 88 RWRPRPASLLSKEQVDK--------IKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLF 139
W P+ +L+ + D + L+ P + S + K +
Sbjct: 6 GWSPKDHNLIKSVREDGRFLSSYGVVHAMLRNTEPRYAFHRDF-----SPKEFRKWQ--- 57
Query: 140 KQFEELREKLRETWEAEKEERKYLRNLVDTDELDSENVEEEVVEFVIKEEITI 192
+ LR + E + + + + ++ + E EF +
Sbjct: 58 ---KGLRHAMEEIMKFPQIKNSPAPVCIKREQRE--GYRLEKWEFYPLPKCVS 105
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 27.2 bits (60), Expect = 4.2
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 9/60 (15%)
Query: 23 VDTGDFSVMNAAEHHQA--TDVEW--DPTGRYVMSG-----VSLWKTKADTGYWQWSFQG 73
+ G +S + H A V+W G ++ VS+ + K +
Sbjct: 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA 143
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP,
single-stranded DNA, DNA dGTPase, HD superfamily,
structural genomics; 2.20A {Thermus thermophilus}
Length = 376
Score = 26.9 bits (60), Expect = 4.3
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 100 EQVDKIKKSLKKYTPAFE----AKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEA 155
E+ +K K+LK + E + R + ++ ++ LF + E L +A
Sbjct: 290 EEAEKALKALKAF--LMERFYRHPEVLRERRKAEAVL---EGLFAAYTRYPELLPREVQA 344
Query: 156 EKEERKYLRNLVD 168
+ E R + D
Sbjct: 345 KIPEEGLERAVCD 357
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport
systems, photosynthesis, cyanobacteria, disulfide bond,
metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Length = 321
Score = 26.9 bits (60), Expect = 4.3
Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 13/66 (19%)
Query: 99 KEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKR-RKLFKQFEELREKLRETWEAEK 157
V+ I+++ + P + + +Q + + +L E
Sbjct: 154 LVYVENIRQAFVELDP------------DNAKYYNANAAVYSEQLKAIDRQLGADLEQVP 201
Query: 158 EERKYL 163
+++L
Sbjct: 202 ANQRFL 207
>3p0c_A Nischarin; structural genomics, structural genomics consortium,
SGC, PX signaling protein; 2.27A {Homo sapiens}
Length = 130
Score = 26.4 bits (58), Expect = 4.3
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 103 DKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQF 142
+K+ K K + + K S+ L+EKR K + +
Sbjct: 64 EKLVAERKIDKNLLPPK--KIIGKNSRSLVEKREKDLEVY 101
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein,
metal binding, cell membrane, copper transport, iron;
1.87A {Streptococcus pyogenes serotype M1} PDB: 1psz_A
3ztt_A
Length = 294
Score = 26.9 bits (60), Expect = 4.5
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 13/66 (19%)
Query: 99 KEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKR-RKLFKQFEELREKLRETWEAEK 157
I K L P +KE EK + + E+L ++ + ++A
Sbjct: 133 IIYSKNIAKQLIAKDP------------KNKETYEKNLKAYVAKLEKLDKEAKSKFDAIA 180
Query: 158 EERKYL 163
E +K +
Sbjct: 181 ENKKLI 186
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 26.8 bits (60), Expect = 4.7
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 17/75 (22%)
Query: 121 RQRMNKASKE-------------LIEKRRKLFKQFEELREKLRETWEAEKEERKYLRNLV 167
R NK + E L+ K R++ K+ EL ++ E + L N+
Sbjct: 51 RHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNIT 110
Query: 168 DTD----ELDSENVE 178
+ +++NV
Sbjct: 111 HPSVPVGKDENDNVP 125
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 27.1 bits (60), Expect = 4.8
Identities = 16/115 (13%), Positives = 30/115 (26%), Gaps = 12/115 (10%)
Query: 42 VEWDPTG-RYVMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPTFCQLRWRPRPASLLSKE 100
+ + P Y + +S +D G + P L
Sbjct: 355 IPFLPNNIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSL 414
Query: 101 QVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEA 155
+ + L + + EK KL + E R+ + W+A
Sbjct: 415 LLKPLFPRLAAFLNNMRPRS-----------AEKLWKLQHEIEMYRQSVIAQWKA 458
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding
protein, ABC trans binding protein; 1.80A {Treponema
pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Length = 313
Score = 26.5 bits (59), Expect = 5.3
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 13/66 (19%)
Query: 99 KEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKR-RKLFKQFEELREKLRETWEAEK 157
V + +SL K P +R + +Q ++L +R ++
Sbjct: 147 SYSVKAVYESLCKLLP------------GKTREFTQRYQAYQQQLDKLDAYVRRKAQSLP 194
Query: 158 EERKYL 163
ER+ L
Sbjct: 195 AERRVL 200
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 26.8 bits (59), Expect = 5.4
Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 125 NKASKELIEKRRKLFKQFEELR---EKLRETWEAEKEERKYLRNLVDTDELDSENVEEEV 181
N+ + EKR +L ++ L +KLR+T K+ + L ++ +E +++
Sbjct: 1902 NQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKL 1961
Query: 182 VEFVIKEEI 190
+ V ++
Sbjct: 1962 KQMVQDQQA 1970
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 50
Score = 24.7 bits (53), Expect = 5.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 125 NKASKELIEKRRKLFKQFEELREKLRETWEAE 156
+ A ++LI +R+L KQ+ E REK+ + E
Sbjct: 7 DTAMRDLILHQRELLKQWTEYREKIGQEMEKS 38
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate,
hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A
{Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A
1h6l_A 1cvm_A
Length = 355
Score = 26.7 bits (58), Expect = 5.5
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 17/68 (25%)
Query: 6 GTHIVLAELRDTGSLEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTG 65
AE + +D D + D+E G++++ G
Sbjct: 202 AIWKFSAEPDGGSNGTVIDRADGRHLTR-------DIE----------GLTIYYAADGKG 244
Query: 66 YWQWSFQG 73
Y S QG
Sbjct: 245 YLMASSQG 252
>3r0a_A Putative transcriptional regulator; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
2.31A {Methanosarcina mazei}
Length = 123
Score = 25.7 bits (56), Expect = 5.7
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 95 SLLSKEQVDKIKKSLKK------YTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELRE 147
L KE + + +++L Y + + R + K + ++ + K++E E
Sbjct: 65 KLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQKIVQSWADRLGQELKEWENGGE 123
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 26.9 bits (59), Expect = 5.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 119 KDRQRMNKASKELIEKRRKLFKQFEELREKLRE 151
+DR +M + + ++R+L K+FEE+R R+
Sbjct: 599 RDRAKMFALLWQSLRRQRQLLKRFEEMRRIYRD 631
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB:
2peh_A
Length = 105
Score = 25.6 bits (56), Expect = 6.9
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 163 LRNLVDTDELDS---ENVEEEVVEFVIKEEITICE 194
LRN+V E+D +EE ++ + I E
Sbjct: 13 LRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFE 47
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell
division, chapero isomerase, rotamase,
ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
PDB: 3gu0_A
Length = 433
Score = 26.5 bits (59), Expect = 7.2
Identities = 11/54 (20%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 139 FKQFEELREKLRETWEAEKEE--RKYLRNLVDTDELDSENVEEEVVEFVIKEEI 190
F+ E+L+E L++ + + ++ +R + ++L E VE E+ + ++ +
Sbjct: 245 FETLEQLKESLKKEGKEIYDVEMKESMREQL-LEKLP-EIVEIEISDRTLEILV 296
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 26.2 bits (58), Expect = 7.3
Identities = 8/60 (13%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 96 LLSKEQVDKIKKSLKKYTPAFEA--KDRQRMNKASKELIEKRRKLFKQ-FEELREKLRET 152
+ D+ + + E + +++ ++ +KR++LF++ F+ + + L
Sbjct: 224 GPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAI 283
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix
motif, interacting with DNAA-BOX, DNAA-box; HET: DNA;
2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Length = 101
Score = 25.3 bits (56), Expect = 7.3
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 129 KELIEKRRKLFKQFEELREKLRE 151
+ +RR++F +EL ++R+
Sbjct: 75 LSEMAERREVFDHVKELTTRIRQ 97
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins,
transcription-activato; 2.27A {Mus musculus}
Length = 387
Score = 26.1 bits (57), Expect = 7.5
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 117 EAKDRQRMNKASKELIEKRR--KLFKQFEELREKL 149
E + R + + + IEKRR K+ +EL +
Sbjct: 5 EHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLV 39
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 26.4 bits (59), Expect = 7.6
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 13/60 (21%)
Query: 97 LSKEQVDKIKKSLKKYT-----PAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRE 151
K ++ ++ P F KA KE++E K+ E E++RE
Sbjct: 805 QEKRL-KELLALAERSQRKLASPGF-------REKAPKEVVEAEEARLKENLEQAERIRE 856
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 26.4 bits (59), Expect = 7.6
Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 23/109 (21%)
Query: 100 EQVDKIKKSLKKYTPAFEAKDRQRM---NK---ASKELIEKRRKLFKQF----------- 142
+ ++ ++K + Y PA R + NK +E ++ +
Sbjct: 251 KTLETLRKEVGAYDPALL--RRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALT 308
Query: 143 ----EELREKLRETWEAEKEERKYLRNLVDTDELDSENVEEEVVEFVIK 187
L+E L + + E V + ++
Sbjct: 309 GAGLPALKEALHALVRSTPPPEMPKPVPRKEVQAGVEVVPVAEGVYEVR 357
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics,
PSI-2, protein structure initiative; 1.90A {Rhodobacter
capsulatus}
Length = 341
Score = 26.1 bits (58), Expect = 8.0
Identities = 5/34 (14%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 154 EAEKEERKYLRNLVDTDELDSENVEEEVVEFVIK 187
A++ ER + + +++ + ++ E + + K
Sbjct: 255 LADEAERAFWKRVIEKGDQQDGDL-EHAMALMTK 287
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM,
RNA binding domain, ST genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.23A {Homo
sapiens} PDB: 3us5_A 2dny_A
Length = 118
Score = 25.5 bits (56), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 163 LRNLVDTDELDSENVEEEVVE 183
LRN+VD ++D + +E EV E
Sbjct: 25 LRNMVDPKDIDDD-LEGEVTE 44
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 26.1 bits (58), Expect = 8.1
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 7/29 (24%)
Query: 42 VEWDPTGRYVMSG-----VSLWKTKADTG 65
V W+ TG + S V LW KA
Sbjct: 312 VSWNLTGTILSSAGDDGKVRLW--KATYS 338
>4dej_A Glutathione S-transferase related protein; transferase-like
protein, transcription regulation; 2.90A {Idiomarina
loihiensis}
Length = 231
Score = 25.8 bits (57), Expect = 8.3
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 114 PAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETW---EAEKEERKYL 163
P R M + ++ K+ K + R++L+E + Y
Sbjct: 96 PVARGTSRLMMYRIERDWYSLAEKIQKNDAQARQELKEGILSLAPIFADTPYF 148
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 25.7 bits (57), Expect = 8.4
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 133 EKRRKLFKQ------FEELREKLRETWEAEKEERKYLRNLVDTDELDSENVE 178
E R K+ ++ FE +KL E + K R+++ E +
Sbjct: 151 EAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRDILARTEGGHHHHH 202
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 26.1 bits (57), Expect = 8.5
Identities = 12/58 (20%), Positives = 25/58 (43%)
Query: 104 KIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKEERK 161
++KK + F ++R + +E ++K K +E+L K+E+K
Sbjct: 375 EMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 26.0 bits (58), Expect = 8.7
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 9/37 (24%)
Query: 36 HHQATDVEWDPTGRYVMSG-------VSLWKTKADTG 65
Q T + W P + +MS +S+W +
Sbjct: 303 GSQVTSLIWSPHSKEIMSTHGFPDNNLSIW--SYSSS 337
Score = 26.0 bits (58), Expect = 9.5
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 42 VEWDPTGRYVMSG-----VSLWKTKADTGYWQWSFQG 73
+ W G + SG V +W A + +++
Sbjct: 223 LAWRSDGLQLASGGNDNVVQIW--DARSSIPKFTKTN 257
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis,
metal- binding, purine metabolism, nucleotide-binding,
GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens}
PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A*
1mf0_A* 1mf1_A* 2dgn_A*
Length = 459
Score = 26.0 bits (58), Expect = 8.8
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 138 LFKQFEELREKLRETWEAEKEERKYLRNLVDTDELDSENVEEEVVEF 184
L F+ E+ + +++ T E+D E +++ +
Sbjct: 187 LVSDFDGFSERFKVLAN-------QYKSIYPTLEIDIEGELQKLKGY 226
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 26.2 bits (57), Expect = 8.8
Identities = 15/90 (16%), Positives = 40/90 (44%)
Query: 90 RPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKL 149
+P + + ++ L+K QR+ + EL E ++L ++F+ L++
Sbjct: 316 KPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLH 375
Query: 150 RETWEAEKEERKYLRNLVDTDELDSENVEE 179
++ + ++++K L + V+ + E
Sbjct: 376 QDEKKKLEDKKKSLDDEVNAFKQRKTAAEL 405
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 26.1 bits (58), Expect = 8.8
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 94 ASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFK-QFEELREKLRET 152
A + + +D+ + P D R+ + R+L K + +L R+
Sbjct: 510 ARIYLAQALDRAQAGALSVLPRLVEGDEARV------VYSAARRLTKREPGDLVALRRQA 563
Query: 153 WEAEKEERKY 162
EA E Y
Sbjct: 564 AEAVLEAGGY 573
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding
protein; 2.60A {Streptococcus suis}
Length = 282
Score = 25.7 bits (57), Expect = 9.0
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 13/66 (19%)
Query: 99 KEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKR-RKLFKQFEELREKLRETWEAEK 157
K V + L+K P A E+I+K K Q ++L + +
Sbjct: 113 KSAVAVASEELQKLLP------------AKAEMIQKNTEKYQAQLDDLHAWVEKELSVIP 160
Query: 158 EERKYL 163
+E +YL
Sbjct: 161 KESRYL 166
>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Bacteroides vulgatus atcc 8482}
Length = 391
Score = 26.0 bits (56), Expect = 9.0
Identities = 12/108 (11%), Positives = 38/108 (35%), Gaps = 13/108 (12%)
Query: 89 WRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFE----E 144
++P +++ ++ D + A + + + + ++F
Sbjct: 2 YQPEKHAVVKSDRGDG-------RLLSTYAIVHEMLKDTHPQYAYRSGMSAQEFTQWQDG 54
Query: 145 LREKLRETWEAEKEERKYLRNLVDTDELDSENVEEEVVEFVIKEEITI 192
+R + E + + +R+ V T++ + +E+ EF +
Sbjct: 55 VRAAMVEIMKFPEIKRQPSPVCVKTEKKEGYILEK--WEFYPFPKSVS 100
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation,
ATPase, transmembrane transport, helicase-like motor
domain; HET: ADP; 2.60A {Mycobacterium tuberculosis}
SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB:
1nl3_A
Length = 922
Score = 26.1 bits (58), Expect = 9.1
Identities = 6/43 (13%), Positives = 16/43 (37%)
Query: 117 EAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKEE 159
+ QR+ + + +E + + ++E E +E
Sbjct: 531 DFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKE 573
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH,
adaptor, endocytosis, phosphoprotein; 2.40A
{Saccharomyces cerevisiae}
Length = 287
Score = 25.9 bits (56), Expect = 9.4
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 99 KEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREK-LRETWEAEK 157
++ K S++ Y+ E + +A ++ ++ LF+ FE + L
Sbjct: 170 HSKLSKNAASIEHYSKNNENS--SHLEEARRQWDQQSPYLFELFETIDYNRLDTLKNCML 227
Query: 158 EERKYLRNLVDTDELDSENVEEEVVEFVIKEEI 190
+ + + + E V + + F + EI
Sbjct: 228 RFQTSFSDYLLNTTKECETVMTKFLAFEPQSEI 260
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 25.8 bits (57), Expect = 9.9
Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 103 DKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREK 148
+ I++S ++ + D E +K R+ E ++
Sbjct: 20 NIIRESQRRRFADPDIVDAII------EADKKWRRTQFLTEASKKL 59
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase,
chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1
d.241.2.1 d.26.1.1 PDB: 1l1p_A
Length = 392
Score = 25.7 bits (57), Expect = 10.0
Identities = 9/54 (16%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 139 FKQFEELREKLRETWEAEKEERKYLRNLVDTDELDS--ENVEEEVVEFVIKEEI 190
+ L+ ++R+ E E ++ ++ + ++ + E +V +I +EI
Sbjct: 263 EGGVDALKAEVRKNMERELKQA--IKARIKEQAIEGLVKENEIQVPSALIDQEI 314
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.389
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,138,231
Number of extensions: 183970
Number of successful extensions: 1224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1159
Number of HSP's successfully gapped: 267
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)