RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13461
(194 letters)
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 33.8 bits (76), Expect = 0.006
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 132 IEKRRKLFKQFEELREKLRETWEAEKEERKYLRNLVDTDELDSENVEEEVVEFVIKEEIT 191
+ +R L K+ E++ E+ E E + + R +T L N+ + V
Sbjct: 115 LLRRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVKNLKTNPRFI 174
Query: 192 IC 193
C
Sbjct: 175 FC 176
>d1gxya_ d.166.1.3 (A:) Eukaryotic mono-ADP-ribosyltransferase
ART2.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 223
Score = 29.9 bits (67), Expect = 0.14
Identities = 8/49 (16%), Positives = 21/49 (42%)
Query: 121 RQRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKEERKYLRNLVDT 169
+M + + L+++ + + + E+ ++ W K R Y + D
Sbjct: 19 VNKMEEKAPLLLQEDFNMNAKLKVAWEEAKKRWNNIKPSRSYPKGFNDF 67
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 28.7 bits (63), Expect = 0.42
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 124 MNKASKELIEKRRKLFKQFEELREKLRETWEAEKEERKYLRNLV 167
+ + ++EL+ + + E +E+L + ERK L N V
Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQ----SNMERKELHNTV 40
Score = 28.3 bits (62), Expect = 0.64
Identities = 6/52 (11%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 99 KEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLR 150
+++ +++ + ++ +A + + + + +R++L +LR +R
Sbjct: 2 RQRTEELLRCNEQ-----QAAELETCKEQLFQSNMERKELHNTVMDLRGNIR 48
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia
coli [TaxId: 562]}
Length = 60
Score = 26.7 bits (59), Expect = 0.50
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 38 QATDVEWDPTGRYVMSGVSL 57
QAT E+D G + G++L
Sbjct: 39 QATSTEYDKDGNIIGYGLTL 58
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 28.2 bits (61), Expect = 0.58
Identities = 4/48 (8%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 18 GSLEFVDTGDFSVMNAAEHHQA-TDVEWDPTGRYVMSG-----VSLWK 59
L T + + ++ + + +Y+++G ++++
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 28.6 bits (63), Expect = 0.59
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 20/93 (21%)
Query: 95 SLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWE 154
++ + +I + Y + A + R ++ + L EK
Sbjct: 387 AMCDRSNAQQIVAEMLSY-----------LETADYSI---REEIVLKVAILAEKY----- 427
Query: 155 AEKEERKYLRNLVDTDELDSENVEEEVVEFVIK 187
+ Y+ +++ + + V EEV VI+
Sbjct: 428 -AVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQ 459
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 27.8 bits (61), Expect = 0.76
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 14 LRDTGSLEFVDTGDFSVMNAAEHHQAT---DVEWDPTGRYVMSGVSLWKTKADTGYWQW 69
+++TG + VD D + + E D D + RY ++ + +
Sbjct: 181 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1)
{Azotobacter vinelandii [TaxId: 354]}
Length = 154
Score = 27.4 bits (60), Expect = 0.85
Identities = 11/71 (15%), Positives = 25/71 (35%)
Query: 119 KDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKEERKYLRNLVDTDELDSENVE 178
K +R+ + E +E L + E+ L+ + E +
Sbjct: 57 KLIKRILFLEGLPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYAS 116
Query: 179 EEVVEFVIKEE 189
E++E +++ E
Sbjct: 117 RELLEDILESE 127
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 27.8 bits (60), Expect = 0.91
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 120 DRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKEERKYLRNLVD 168
+ + K K+L++K + K+ +E++E R + L+D
Sbjct: 409 AAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLID 457
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 27.4 bits (59), Expect = 1.1
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 16 DTGSLEFVDTGDFSVMNAAEHHQA--TDVEWDPTGRYVMSG-----VSLWK 59
D +L D + M H+ T +++ T YV++G V +W+
Sbjct: 267 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli
[TaxId: 562]}
Length = 100
Score = 26.3 bits (58), Expect = 1.2
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 127 ASKELIE---KRRKLFKQFEELREKLRE 151
A + + KR L ++ R +L+
Sbjct: 1 AKQSMKAREVKRVALADKYFAKRAELKA 28
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 26.5 bits (58), Expect = 1.8
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 71 FQGKIIKRF-NSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASK 129
F I K N+ + +P P + ++ + K L+K A +D + +A++
Sbjct: 191 FSPLIEKLILNNSHRVTIEMQPDPE--KATQEEVEEKNILEKVKAAMTEEDLAELARATE 248
Query: 130 ELIEKRRK 137
EL K+
Sbjct: 249 ELKLKQET 256
>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase
{Helicobacter pylori [TaxId: 210]}
Length = 259
Score = 26.5 bits (57), Expect = 1.9
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 120 DRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAEKEERKYLRNLVD 168
+ +K + ++LF+ LRE + E +++ +
Sbjct: 198 RQLLESKDIDFIYALYKRLFRPIPSLRESAKLE-LEEHANNPFVKEICS 245
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 26.0 bits (56), Expect = 2.7
Identities = 18/166 (10%), Positives = 49/166 (29%), Gaps = 1/166 (0%)
Query: 20 LEFVDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRF 79
L+F + E+ + +++ + W+ + ++ R+
Sbjct: 34 LKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRY 93
Query: 80 NSPTFCQLRWRPRPASLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLF 139
+ + + LK F + N ++R +
Sbjct: 94 -VYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETV 152
Query: 140 KQFEELREKLRETWEAEKEERKYLRNLVDTDELDSENVEEEVVEFV 185
K E++++ + + E + +VD + VE + + V
Sbjct: 153 KFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIV 198
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 25.7 bits (54), Expect = 3.7
Identities = 10/93 (10%), Positives = 19/93 (20%), Gaps = 7/93 (7%)
Query: 40 TDVEWDPTGRYVMSG-----VSLWKTKADTGYWQWSFQGKIIKRFNSPTFCQLRWRPRPA 94
T + G+ + S ++ W TG F +
Sbjct: 16 TALSSSADGKTLFSADAEGHINSWDIS--TGISNRVFPDVHATMITGIKTTSKGDLFTVS 73
Query: 95 SLLSKEQVDKIKKSLKKYTPAFEAKDRQRMNKA 127
+ V + Q + A
Sbjct: 74 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
>d3dbya2 a.29.13.1 (A:126-260) Uncharacterized protein
BCE_G9241_0798 {Bacillus cereus [TaxId: 1396]}
Length = 135
Score = 25.2 bits (55), Expect = 3.9
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 129 KELIEKRRKLFKQFEELREKLRETWEAEKEERKYLRNLVDTDELDSENVEEEVVEFV--- 185
K L EK + K FE+ K E + E + L +++V E+ F
Sbjct: 31 KRLKEKSEEFTKHFEQFYLKAVEMTGYLRTELHHFPALKKF----TKDVSLELKLFSHFL 86
Query: 186 --IKEEITICE 194
++E E
Sbjct: 87 HEVEELELSNE 97
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 26.0 bits (55), Expect = 3.9
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Query: 23 VDTGDFSVMNAAEHHQA--TDVEWDPTGRYVMSG-----VSLWKTKADTGYWQW 69
+ ++ + H T V+W P +++ +W K T
Sbjct: 36 KSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 89
Score = 24.4 bits (51), Expect = 10.0
Identities = 2/39 (5%), Positives = 10/39 (25%), Gaps = 5/39 (12%)
Query: 40 TDVEWDPTGRYVMSG-----VSLWKTKADTGYWQWSFQG 73
+ W+ + V +++ + +
Sbjct: 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE 49
>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase,
PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
Length = 447
Score = 25.3 bits (55), Expect = 5.1
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 109 LKKYTPAFEAKDRQRMNKASKEL---------IEKR-RKLFKQFEELREKLRETWEAEKE 158
L +Y P A+ + SK + R L + F E ++LR E +
Sbjct: 313 LFRYDPRLAAQGKNPFQLDSKAPDGSVEEFLMAQNRFAVLDRSFPEDAKRLRAQVAHELD 372
Query: 159 ER-KYLRNL 166
R K L ++
Sbjct: 373 VRFKELEHM 381
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 481
Score = 25.1 bits (54), Expect = 6.8
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 124 MNKASKELI--EKRRKLFKQFEELRE--KLRETWEAEKEERKYLRNLVDTDELDSENVEE 179
+ + KELI KRRK+ + E+++ E + +++ NL + +
Sbjct: 383 LKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTD 442
Query: 180 E 180
Sbjct: 443 Y 443
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 24.1 bits (52), Expect = 6.9
Identities = 10/87 (11%), Positives = 30/87 (34%), Gaps = 12/87 (13%)
Query: 97 LSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEA- 155
L+ ++ + K ++ + ++ L E++ + + E L L
Sbjct: 1 LTDSEIASMIK---------DSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALL 51
Query: 156 EKEERKYLRNLVDT--DELDSENVEEE 180
ER+ + + + ++V+
Sbjct: 52 SAAERQVIDDAAAHLSEVAQGDDVDAI 78
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 24.9 bits (52), Expect = 7.4
Identities = 12/67 (17%), Positives = 19/67 (28%)
Query: 23 VDTGDFSVMNAAEHHQATDVEWDPTGRYVMSGVSLWKTKADTGYWQWSFQGKIIKRFNSP 82
V + + + HQ T + P+G Y SG + I F+ P
Sbjct: 45 VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP 104
Query: 83 TFCQLRW 89
Sbjct: 105 VKDISWD 111
>d2fika2 d.19.1.1 (A:8-185) CD1, alpha-1 and alpha-2 domains {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 178
Score = 24.5 bits (53), Expect = 7.6
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 51 VMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPT 83
+ +G ++ A + +FQGK + RF +
Sbjct: 93 LSAGCEMYPGNASESFLHVAFQGKYVVRFWGTS 125
>d1onqa2 d.19.1.1 (A:7-183) CD1, alpha-1 and alpha-2 domains {Human
(Homo sapiens), CD1a [TaxId: 9606]}
Length = 177
Score = 24.6 bits (53), Expect = 8.2
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 51 VMSGVSLWKTKADTGYWQWSFQGKIIKRFNSPTFCQLRWRPRPA 94
V G L K + Q ++QG F + + W P P
Sbjct: 92 VTGGCELHSGKVSGSFLQLAYQGSDFVSFQNNS-----WLPYPV 130
>d1aola_ b.20.1.1 (A:) F-MuLV receptor-binding domain {Friend murine
leukemia virus [TaxId: 11795]}
Length = 228
Score = 24.6 bits (53), Expect = 8.9
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 64 TGYWQWSFQGKIIKRFNSPTFCQ 86
YW+ S I N+ T Q
Sbjct: 143 RVYWKPSSSWDYITVDNNLTTSQ 165
>d2ex3b1 a.263.1.1 (B:71-259) DNA terminal protein {Bacteriophage
phi-29 [TaxId: 10756]}
Length = 189
Score = 24.2 bits (52), Expect = 9.0
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 98 SKEQVDKIKKSLKKYT-PAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWEAE 156
S ++ +++S++ T P + K ++ + +E F +EL E+L++ +
Sbjct: 85 SYSRLRTLEESMEMRTDPQYYEKKMIQLQLNFIKSVEGSFNSFDAADELIEELKKIPPDD 144
Query: 157 KEERKYLRNLVDTDELDSENVEEEVVE 183
E + + +E DSE E VE
Sbjct: 145 FYELFLRISEISFEEFDSEGNTVENVE 171
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 66
Score = 23.1 bits (50), Expect = 9.7
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 97 LSKEQVDKIKKSLKKYTPAFEAKDRQRMNKASKELIEKRRKLFKQFEELREKLRETWE 154
K ++ ++ + KA KE++E K+ E E++RE
Sbjct: 9 QEKRL-KELLALAERSQRKLASPGF--REKAPKEVVEAEEARLKENLEQAERIREALS 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.389
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 777,761
Number of extensions: 37284
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 98
Length of query: 194
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 113
Effective length of database: 1,295,466
Effective search space: 146387658
Effective search space used: 146387658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)