BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13464
(515 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7KN90|SYCC_DROME Cysteine--tRNA ligase, cytoplasmic OS=Drosophila melanogaster
GN=Aats-cys PE=1 SV=1
Length = 741
Score = 262 bits (670), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 166/468 (35%), Positives = 237/468 (50%), Gaps = 105/468 (22%)
Query: 20 PKWSLPSGYDT-GIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLD 78
P W P D +K++N +T+ K F+ + N++ WY+CGPTVYD+ H+GHA + D
Sbjct: 7 PAWQAPEAVDRPKLKLFNSLTRQKEDFVPLDGNNVTWYSCGPTVYDASHMGHARSYISFD 66
Query: 79 IIRRILEHYFHIHSIVISSVTDIDDKIINKA--NSLKEDYKTVAKRYFLPLIFKILHQKV 136
I+RRIL YF + + ++TDIDDKII +A N L ++Y A++ LPL + QK
Sbjct: 67 ILRRILSDYFGYNIHYVMNITDIDDKIIRRARQNHLFDEYAAEAQK--LPLDELLGQQK- 123
Query: 137 VGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAK 196
+ R C D ++I+ DK + + N A
Sbjct: 124 --EVLQRFQDTCAKNTDPDKKIML-----------------DKTLQRMND--------AV 156
Query: 197 RYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATW 256
+ + K +++ K + L +AK P+ D + G QI D
Sbjct: 157 EALTKAVGKGDEREISEKRLLYLNEAK---DPISDWLDSLK------GAQIND------- 200
Query: 257 QFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVL 316
+ VF +LP Y +E ++ M+ +L
Sbjct: 201 ---------NAVFEALPRY--------------------------WEDQFHNDMKSLNIL 225
Query: 317 PPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP-----HYFKL----WG 367
PP TRVSE++P I +FIQ ++D AY +++SVYFDV+ F HY KL +G
Sbjct: 226 PPDVLTRVSEYVPQIVTFIQKIIDNGLAY-AANNSVYFDVNGFDKREKHHYAKLVPEAYG 284
Query: 368 RNENITQH-----------AVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMA 416
+++ + + KRS DFALWK++K GEPW++S WGKGRPGWHIECSAMA
Sbjct: 285 DTKSLQEGEGDLSIAEDRLSEKRSANDFALWKASKAGEPWWDSPWGKGRPGWHIECSAMA 344
Query: 417 SHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
S FG D+HTGG+DLKFPHH+NE AQS A N+S+WV Y+LHTGHL
Sbjct: 345 SDIFGPTFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHL 392
>sp|Q5M7N8|SYCC_XENTR Cysteine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=cars
PE=2 SV=1
Length = 747
Score = 241 bits (615), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 156/466 (33%), Positives = 223/466 (47%), Gaps = 102/466 (21%)
Query: 20 PKWSLP-SGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLD 78
P WS P + G+++YN +T++K F+ Q+ N + WY CGPTVYD+ H+GHA + D
Sbjct: 15 PPWSAPNTQAQPGLRLYNSLTRSKELFVPQDGNKVTWYCCGPTVYDASHMGHARSYISFD 74
Query: 79 IIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVG 138
I+RR+L YF ++TDIDDKII +A + ++ +R P L Q V
Sbjct: 75 ILRRVLRDYFKYDVFYCMNITDIDDKIIKRARQ-RHLFQQYRERNPRP---SDLLQDVSA 130
Query: 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
++ + R++LE IH V +++ + D + + A +
Sbjct: 131 ALTPFLQRISEANDPDKRQMLE---RIHGSVSAALLPLQDAVSSNARA------------ 175
Query: 199 FLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQF 258
+ + +L+ +L +A VD ++ DE G QI D
Sbjct: 176 -----------EELERLSQELMEAAVDL------LSDWLDE--KHGAQITD--------- 207
Query: 259 KDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPP 318
+ +F LP + +E EY ME VLPP
Sbjct: 208 -------NSIFSQLPKH--------------------------WESEYHRDMEALNVLPP 234
Query: 319 TRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSF----PHYFKLWGRNENITQ 374
TRVSE++P I +F+Q ++D Y+ S+ SVYF F HY+ Q
Sbjct: 235 DVLTRVSEYVPEIVAFVQRIVDNGYGYV-SNGSVYFSTAKFHASEKHYYAKLVPEAVGDQ 293
Query: 375 HAV----------------KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASH 418
A+ K+SP DFALWK++KPGEP +ES WGKGRPGWHIECSAMA
Sbjct: 294 KALQEGEGDLSISADRLSEKQSPNDFALWKASKPGEPSWESPWGKGRPGWHIECSAMAGS 353
Query: 419 FFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
G +D+H GG DL+FPHH+NE AQS A+ + WV Y+LHTGHL
Sbjct: 354 ILGESMDIHGGGFDLRFPHHDNELAQSEAYFDNDHWVRYFLHTGHL 399
>sp|Q291L4|SYCC_DROPS Cysteine--tRNA ligase, cytoplasmic OS=Drosophila pseudoobscura
pseudoobscura GN=Aats-cys PE=3 SV=1
Length = 741
Score = 216 bits (549), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 134/344 (38%), Positives = 187/344 (54%), Gaps = 31/344 (9%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKA--NSLKEDYKTVAKRYFLR 201
GHA + DI+RRIL YF + + ++TDIDDKII +A N L E+Y + L
Sbjct: 57 GHARSYISFDILRRILADYFGYNIHYVMNITDIDDKIIKRARQNHLFEEYAGESANLPLD 116
Query: 202 LIFKILHQKVVRKLAIDLKKAKVDSGPVLTKC-DEFRDELLALGVQIKDQKCEATWQFKD 260
+ + +VR K D +L K D ++AL + + + +
Sbjct: 117 QLLGHQKEVLVRFQETCAKNTDPDKKVMLDKTLQRMNDAVVALTTAVSQGDEKGIAEKRQ 176
Query: 261 GKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTR 320
+ + I+ L G VFE L F +E ++ M+ +LPP
Sbjct: 177 HYLNEAKDPIAEWL------DGKKGAEINDNAVFESLPRF-WEDQFHNDMKSLNILPPDV 229
Query: 321 ATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP-----HYFKL----WGRNEN 371
TRVSE++P I +FIQ ++D AY +++SVYFDV+ F HY KL +G ++
Sbjct: 230 LTRVSEYVPQIVAFIQKIIDNGLAY-AANNSVYFDVNGFDRKEKHHYAKLVPEAYGDTKS 288
Query: 372 ITQH-----------AVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFF 420
+ + + KRS DFALWK++K GEPW++S WG+GRPGWHIECSAMAS F
Sbjct: 289 LQEGEGDLSVAEDRLSEKRSANDFALWKASKAGEPWWDSPWGRGRPGWHIECSAMASDIF 348
Query: 421 GGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
G D+HTGG+DLKFPHH+NE AQS A N+S+WV Y+LHTGHL
Sbjct: 349 GSTFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHL 392
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
Query: 20 PKWSLPSGYDT-GIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLD 78
P W P + +++YN +T+ K F+ + N++ WY+CGPTVYD+ H+GHA + D
Sbjct: 7 PAWQAPKPAERPKLRLYNSLTRQKEDFVPLDGNNVTWYSCGPTVYDASHMGHARSYISFD 66
Query: 79 IIRRILEHYFHIHSIVISSVTDIDDKIINKA--NSLKEDYKTVAKRYFLPLIFKILHQKV 136
I+RRIL YF + + ++TDIDDKII +A N L E+Y + LPL + HQK
Sbjct: 67 ILRRILADYFGYNIHYVMNITDIDDKIIKRARQNHLFEEY--AGESANLPLDQLLGHQK- 123
Query: 137 VGSIPTRGHAVCNVKLDIIRRIL 159
+ R C D ++++
Sbjct: 124 --EVLVRFQETCAKNTDPDKKVM 144
>sp|Q09860|SYC_SCHPO Probable cysteine--tRNA ligase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC29E6.06c PE=3 SV=1
Length = 754
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 191/368 (51%), Gaps = 37/368 (10%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANS--LKEDYKTVAKRYFLR 201
GHA V DI+RRIL+ YF + + +VTDIDDKII +A L E+YK K+
Sbjct: 57 GHARNYVTTDILRRILQSYFGYNITFVQNVTDIDDKIILRARQQYLFEEYK---KQQGTN 113
Query: 202 LIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEF-----------RDELLALGVQIKDQ 250
+KV KK + +++ ++ + L + V
Sbjct: 114 KSHSEAREKVTEAWFAYAKKNLPEPPSSMSEWPQWLASHDIPTLAINNPKLPMHVDALKS 173
Query: 251 KCEATWQFKDGKVFS-DRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFES 309
+A + ++ S D + + L+ + + LG +F L + +E ++ +
Sbjct: 174 ALDALQVSEASEIISLDGFWPKVQDVLVPLLDAELGSTVTDPAIFRKLAAY-WEDDFNKD 232
Query: 310 MEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPH----YFKL 365
M VLPPT TRVSE++P I F+Q ++D AY +D SVYFD ++F Y KL
Sbjct: 233 MANLNVLPPTAVTRVSEYVPEIVDFVQRIIDRGYAYPVTDGSVYFDTEAFEKGGHFYAKL 292
Query: 366 --W--GRNENITQH-------AVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSA 414
W G E I + K+ P DFALWK++KPGEP ++S W KGRPGWHIECS
Sbjct: 293 EPWNKGNRELIAEGEGSLAALTGKKRPGDFALWKASKPGEPSWDSPWSKGRPGWHIECSV 352
Query: 415 MASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL--RGTDGTRR 472
MAS G +D+H+GGIDL FPHH+NE AQS A+ + QWVNY+ H GHL G ++
Sbjct: 353 MASALLGSNIDIHSGGIDLAFPHHDNELAQSEAYFDCPQWVNYFFHAGHLHIEGQKMSKS 412
Query: 473 LRAARFIT 480
L+ FIT
Sbjct: 413 LK--NFIT 418
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 66/98 (67%), Gaps = 3/98 (3%)
Query: 22 WSLPSGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIR 81
W +P G T + +YN +T +KVPF+ N ++L WY CGPTVYD+ H+GHA V DI+R
Sbjct: 11 WGVPKGQRTELYVYNTLTHSKVPFV-SNGSNLTWYCCGPTVYDASHMGHARNYVTTDILR 69
Query: 82 RILEHYFHIHSIVISSVTDIDDKIINKANS--LKEDYK 117
RIL+ YF + + +VTDIDDKII +A L E+YK
Sbjct: 70 RILQSYFGYNITFVQNVTDIDDKIILRARQQYLFEEYK 107
>sp|P53852|SYC_YEAST Cysteine--tRNA ligase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YNL247W PE=1 SV=1
Length = 767
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 199/377 (52%), Gaps = 53/377 (14%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKA--NSLKEDY-KTVAKRYFL 200
GHA V +DI RRI++ YF + +VTDIDDKII +A N L +++ K ++
Sbjct: 74 GHARNYVSIDINRRIIQDYFGYDVQFVQNVTDIDDKIILRARQNYLFDNFVKENDTKFNA 133
Query: 201 RLIFKI---LHQKVVRKLAIDLKKAK-----------VDSGPVLTKCDEFRDELLALGVQ 246
++ K+ L Q + + I + K D+ + + +F + A+
Sbjct: 134 TVVDKVKTALFQYINKNFTIQGSEIKTIEEFETWLSNADTETLKLENPKFPMHVTAVQNA 193
Query: 247 IKD-QKCEATWQFKDGKVFSDRVF-ISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYEL 304
I+ K ++ D +V ++V +++PL + ++ P R + +E
Sbjct: 194 IESITKGDSM----DAEVAFEKVKDVTVPLLDKELGSTISNPEIFRQLPA------YWEQ 243
Query: 305 EYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDV---DSFPH 361
++ + M VLPPT TRVSE++P I F+Q ++D AY SD SVYFD D P+
Sbjct: 244 KFNDDMLSLNVLPPTVTTRVSEYVPEIIDFVQKIIDNGYAYATSDGSVYFDTLKFDKSPN 303
Query: 362 --YFKL--WGRNE------------NITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGR 405
Y K W + + N + K+S DFALWK++K GEP +ES WGKGR
Sbjct: 304 HDYAKCQPWNKGQLDLINDGEGSLSNFADNG-KKSNNDFALWKASKAGEPEWESPWGKGR 362
Query: 406 PGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL- 464
PGWHIECS MAS G +D+H+GGIDL FPHH+NE AQS A + QW+NY+LHTGHL
Sbjct: 363 PGWHIECSVMASDILGSNIDIHSGGIDLAFPHHDNELAQSEARFDNQQWINYFLHTGHLH 422
Query: 465 -RGTDGTRRLRAARFIT 480
G ++ L+ FIT
Sbjct: 423 IEGQKMSKSLK--NFIT 437
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 65/93 (69%), Gaps = 3/93 (3%)
Query: 20 PKWSLPS--GYDTGIKIYNPITKTKVPFIIQNKNH-LKWYACGPTVYDSPHIGHAVCNVK 76
PKW +P+ +T +K+YN +T++KV FI Q+ N + WY+CGPTVYD+ H+GHA V
Sbjct: 22 PKWKVPTPQAKETVLKLYNSLTRSKVEFIPQSGNRGVTWYSCGPTVYDASHMGHARNYVS 81
Query: 77 LDIIRRILEHYFHIHSIVISSVTDIDDKIINKA 109
+DI RRI++ YF + +VTDIDDKII +A
Sbjct: 82 IDINRRIIQDYFGYDVQFVQNVTDIDDKIILRA 114
>sp|Q5F408|SYCC_CHICK Cysteine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=CARS PE=2
SV=1
Length = 748
Score = 188 bits (477), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 126/357 (35%), Positives = 173/357 (48%), Gaps = 58/357 (16%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANS----------------L 187
GHA + DI+RRIL YF ++TDIDDKII + L
Sbjct: 66 GHARSYISFDILRRILRDYFKFDVFYCMNITDIDDKIIKRTRQNYLFEQYRKNKSTPAQL 125
Query: 188 KEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQI 247
ED KT ++ + ++L K R++ ++ A V + D ++ + A
Sbjct: 126 LEDVKTASELFSVKLSETTDPDK--RQMLEKIQNA------VKSAFDPLQEAVQAKLPAE 177
Query: 248 KDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYF 307
+ +C + + SD + S G +F L F +E E+
Sbjct: 178 EISRCHEILLEEAKDLLSDWL------------DSKFGSQVTDNSIFSELPKF-WEGEFH 224
Query: 308 ESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP-----HY 362
+ ME VLPP TRVSE++P I +F++ ++D Y+ S+ SVYFD F Y
Sbjct: 225 KDMEALNVLPPDVLTRVSEYVPEIVAFVKKIVDNGYGYV-SNGSVYFDTVKFGSSEKHSY 283
Query: 363 FKLWGR---NENITQHA------------VKRSPFDFALWKSAKPGEPWYESAWGKGRPG 407
KL ++ Q K SP DFALWKS+KPGEP ++S WGKGRPG
Sbjct: 284 AKLVPEAVGDQKALQEGEGDLSISADRLCEKHSPNDFALWKSSKPGEPSWDSPWGKGRPG 343
Query: 408 WHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
WHIECSAMA G +D+H GG DL+FPHH+NE AQS A+ WV Y+LHTGHL
Sbjct: 344 WHIECSAMAGSILGESMDIHGGGFDLRFPHHDNELAQSEAYFENDNWVRYFLHTGHL 400
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 20 PKWSLPSGYD-TGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLD 78
P WS P G + + +YN +T+ K F QN + WY CGPTVYD+ H+GHA + D
Sbjct: 16 PPWSPPEGTKHSRLCLYNSLTRNKEIFQPQNGKKVTWYCCGPTVYDASHMGHARSYISFD 75
Query: 79 IIRRILEHYFHIHSIVISSVTDIDDKIINKA--NSLKEDYK 117
I+RRIL YF ++TDIDDKII + N L E Y+
Sbjct: 76 ILRRILRDYFKFDVFYCMNITDIDDKIIKRTRQNYLFEQYR 116
>sp|Q7ZWR2|SYCC_XENLA Cysteine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=cars PE=2
SV=1
Length = 747
Score = 183 bits (465), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 170/354 (48%), Gaps = 52/354 (14%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLI 203
GHA + DI+RR+L YF ++TDIDDKII KR R +
Sbjct: 65 GHARSYISFDILRRVLRDYFKYDVFYCMNITDIDDKII--------------KRARQRHL 110
Query: 204 FKILHQKVV--RKLAIDLKKAKVDSGPVLTKCDEFRD-ELLALGVQIKDQKCEATWQFKD 260
F+ + L D+ A + P L + E D + + +I+ A +D
Sbjct: 111 FQQYRESNPPHSDLLQDVNTALI---PFLQRISETNDPDKKQMLERIQTAVSAALLPLQD 167
Query: 261 G--KVFSDRVFISLPLYLILIQVSLL--------GPLTLRTVVFEFLFNFRYELEYFESM 310
K L+ V LL G +F L + +E EY + M
Sbjct: 168 ALNKNTGAEELQKHSQVLMEAAVDLLSDWLDEKHGAQIADNSIFSQLPKY-WEGEYHKDM 226
Query: 311 EKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDV----DSFPHYFKLW 366
E VL P TRVSE++P I +F+Q ++D Y+ S+ SVYF DS H++
Sbjct: 227 EALNVLTPDVLTRVSEYVPEIVAFVQKIVDNGYGYV-SNGSVYFSTAKFHDSENHFYAKL 285
Query: 367 GRNENITQHAV----------------KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHI 410
Q A+ K+SP DFALWK++KPGEP +ES WGKGRPGWHI
Sbjct: 286 VPEAVGDQKALQEGEGDLSISADRLSEKQSPNDFALWKASKPGEPSWESPWGKGRPGWHI 345
Query: 411 ECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
ECSAMA G +D+H GG DL+FPHH+NE AQS A+ + WV Y+LHTGHL
Sbjct: 346 ECSAMAGSILGESMDIHGGGFDLRFPHHDNELAQSEAYFDNDHWVRYFLHTGHL 399
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 20 PKWSLPSGYDT-GIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLD 78
P WS P+ + G+++YN +T++K F Q + WY CGPTVYD+ H+GHA + D
Sbjct: 15 PPWSAPNTNEQPGLRLYNSLTRSKELFFPQVGRKVTWYCCGPTVYDASHMGHARSYISFD 74
Query: 79 IIRRILEHYFHIHSIVISSVTDIDDKIINKA 109
I+RR+L YF ++TDIDDKII +A
Sbjct: 75 ILRRVLRDYFKYDVFYCMNITDIDDKIIKRA 105
>sp|Q54KR1|SYCC_DICDI Cysteine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=cysS PE=3 SV=1
Length = 660
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/198 (46%), Positives = 125/198 (63%), Gaps = 20/198 (10%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
++E +FE M+ VLPP TRV+E++P I +++ ++ AY S+ SVYFD +F
Sbjct: 129 KWETAFFEDMKLLNVLPPDALTRVTEYVPQIVEYVEKIISNGFAY-ESNGSVYFDTVAFS 187
Query: 361 H---YFKLWGR---NENITQH-----------AVKRSPFDFALWKSAKPGEPWYESAWGK 403
Y KL NE + + KRS FDFALWK +KPGEP + S WG+
Sbjct: 188 KAHDYGKLEPNSVGNEKLAAEGEGSLTATSAVSEKRSGFDFALWKKSKPGEPVWNSPWGE 247
Query: 404 GRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGH 463
GRPGWHIECSAMAS GG +D+H+GG DLKFPHH+NE AQS AF+ QW+NY++H+GH
Sbjct: 248 GRPGWHIECSAMASDLLGGNIDIHSGGSDLKFPHHDNELAQSEAFYGNRQWINYFVHSGH 307
Query: 464 LRGTDGTRRLRAAR-FIT 480
L DG + ++ + FIT
Sbjct: 308 LL-IDGLKMSKSLKNFIT 324
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 6 QSSLALSYATSCESPKWSLPSGYDTGIKIYNPITKTKVPFIIQNKNH---LKWYACGPTV 62
+S+ A + +T P+W P G +T + I N +T KVPF+ L WYACGPTV
Sbjct: 10 ESTSAAAASTKKPFPEWIKPKGKETELLINNSLTGGKVPFVFNESGKGRSLTWYACGPTV 69
Query: 63 YDSPHIGHAVCNVKLDIIRRILEHY--FHIHSIV 94
YD+ H+GHA + DIIRRI+++Y F+I ++
Sbjct: 70 YDASHMGHARTYISFDIIRRIMKNYLGFNIQYVM 103
Score = 36.6 bits (83), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 148 CNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKIL 207
N +L++I I E+ +I S+ + + +I + + K + IL
Sbjct: 443 TNPRLNLISAIAEYITYIFSVFGLTESSTASSMIG--------FGSAGKGNIEEEMTPIL 494
Query: 208 HQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLA-LGVQIKDQKC-EATWQFKDGKVF 264
+ + + D+ +L CD RDE+L LGV+I D+ A W+F+D +
Sbjct: 495 NALTQFRSEVRASAIAKDTTSILKTCDNLRDEVLPLLGVKIDDKSATTAMWKFEDKETL 553
>sp|A1RYM3|SYC_THEPD Cysteine--tRNA ligase OS=Thermofilum pendens (strain Hrk 5) GN=cysS
PE=3 SV=1
Length = 474
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 118/180 (65%), Gaps = 8/180 (4%)
Query: 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPH 361
Y +Y E+++K VL RV+E I I F+Q L+D+ AY+ SVYFDVD++P
Sbjct: 92 YTKDYLEALQKLRVLVDVHP-RVTEHISEIIDFVQKLIDSGHAYVAPSGSVYFDVDTYPD 150
Query: 362 YFKLWGR--NENITQH---AVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMA 416
Y +L GR + +Q + K++P+DFALWK+ KPGEP+++S WG GRPGWHIECS M+
Sbjct: 151 YGRLSGRLDKKMWSQEEFASEKKNPYDFALWKARKPGEPYWDSPWGPGRPGWHIECSVMS 210
Query: 417 SHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL--RGTDGTRRLR 474
S + G + D+H GG DL FPHHENE AQS A + WV YW+HTG L RG ++ L+
Sbjct: 211 SKYLGRRFDIHGGGTDLIFPHHENERAQSEALFGEKPWVKYWMHTGMLQVRGEKMSKSLK 270
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRI--LEHYFH 89
+++YN ++++ F + + Y CGPTVYD H+GHA V D+I+R L Y
Sbjct: 2 LRVYNTLSRSLEVFEPVEEGRVSIYVCGPTVYDYSHVGHARTYVAFDVIKRYLRLRGYDV 61
Query: 90 IHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCN 149
+H + ++TDIDDKIIN+A D++ + Y + + +V+ + R +
Sbjct: 62 VH---VQNITDIDDKIINRARDEGRDWREIVDEYTKDYLEALQKLRVLVDVHPRVTEHIS 118
Query: 150 VKLDIIRRILE 160
+D ++++++
Sbjct: 119 EIIDFVQKLID 129
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 15/96 (15%)
Query: 144 GHAVCNVKLDIIRRILE--HYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY--- 198
GHA V D+I+R L Y +H + ++TDIDDKIIN+A D++ + Y
Sbjct: 39 GHARTYVAFDVIKRYLRLRGYDVVH---VQNITDIDDKIINRARDEGRDWREIVDEYTKD 95
Query: 199 FLRLIFKI-----LHQKVVRKLA--IDLKKAKVDSG 227
+L + K+ +H +V ++ ID + +DSG
Sbjct: 96 YLEALQKLRVLVDVHPRVTEHISEIIDFVQKLIDSG 131
>sp|B3E1P0|SYC_GEOLS Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 /
DSM 17278 / SZ) GN=cysS PE=3 SV=1
Length = 487
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
RY + E M++ G+L PT + ++ I I S IQ L+D AY D VYF V++FP
Sbjct: 92 RYIATFDEDMDRLGMLRPTIEPKATDHIEDIISIIQRLIDNGHAY-AVDGDVYFAVETFP 150
Query: 361 HYFKLWGRN-------ENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413
Y KL GRN + KR+P DFALWK +KPGEPW+ES WGKGRPGWHIECS
Sbjct: 151 AYLKLSGRNLDDMLAGARVDVDERKRNPMDFALWKGSKPGEPWWESPWGKGRPGWHIECS 210
Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTG 462
AM+ F G D+H GG DL FPHHENE AQS N Q+V YWLH G
Sbjct: 211 AMSMRFLGPSFDIHGGGKDLVFPHHENEIAQSEG-ANGCQFVKYWLHNG 258
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 31 GIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHI 90
+++YN ++ K PF+ + + Y CG TVYD HIGHA + D+I R L F
Sbjct: 2 ALRLYNTLSGEKEPFVPRVAGKVGMYVCGVTVYDFCHIGHARAGIVFDMIYRYLR--FSG 59
Query: 91 HSIV-ISSVTDIDDKIINKANSLKEDYKTVAKRY 123
+ + I + TDIDDKIIN+AN DY+T+A RY
Sbjct: 60 YDVTYIRNYTDIDDKIINRANQEGTDYRTIADRY 93
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIV-ISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GHA + D+I R L F + + I + TDIDDKIIN+AN DY+T+A RY
Sbjct: 40 GHARAGIVFDMIYRYLR--FSGYDVTYIRNYTDIDDKIINRANQEGTDYRTIADRY 93
>sp|Q6DJ95|SYCM_XENTR Probable cysteine--tRNA ligase, mitochondrial OS=Xenopus tropicalis
GN=cars2 PE=2 SV=1
Length = 572
Score = 175 bits (443), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPH 361
YE ++ + M VLPPT RV+E IP I SFI+ ++ AY S +VYFDV S
Sbjct: 146 YEQDFKQDMTALKVLPPTVYMRVTENIPQIISFIEHIIANGYAYATSQGNVYFDVQSIGE 205
Query: 362 YFKLWG------RNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAM 415
+ + +E+ +Q KR DFALWK++KP EP++ S WGKGRPGWHIECS +
Sbjct: 206 RYGKFNDSFSDTASESASQD--KRHIRDFALWKTSKPEEPYWASPWGKGRPGWHIECSTI 263
Query: 416 ASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
AS FG +D+HTGGIDL FPHHENE AQ A+H +QW NY+LHTGHL
Sbjct: 264 ASSVFGKHLDIHTGGIDLAFPHHENEIAQCEAYHQSTQWGNYFLHTGHL 312
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 72/115 (62%), Gaps = 2/115 (1%)
Query: 11 LSYATSCESPK--WSLPSGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHI 68
S C SP W+ PSG+DTGIK+YN +T+ K P I+ + WY+CGPTVYD H+
Sbjct: 32 FSCGNVCASPAGCWAPPSGHDTGIKVYNSLTRRKDPLILADPTVATWYSCGPTVYDHAHL 91
Query: 69 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
GHA V+ DIIRRIL F I ++V+ VTDIDDKII +A L +A+ Y
Sbjct: 92 GHACSYVRFDIIRRILLKVFGIDTVVVMVVTDIDDKIIKRAKELNISPVALARTY 146
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 224 VDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGK 262
++ P+L CD R L G+ +KD+ +TW+ D K
Sbjct: 531 LEREPLLQACDIMRQHLAVYGINVKDRGNTSTWELLDRK 569
>sp|Q82Y45|SYC_NITEU Cysteine--tRNA ligase OS=Nitrosomonas europaea (strain ATCC 19718 /
NBRC 14298) GN=cysS PE=3 SV=1
Length = 465
Score = 173 bits (438), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 111/171 (64%), Gaps = 12/171 (7%)
Query: 306 YFESMEK----FGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPH 361
Y ++ME+ GV+ P+ R +E++ + + I++LL+ + AY+ S+ V++DV FP
Sbjct: 92 YIQAMEEDAMALGVISPSFEPRATEYVDSMIAMIESLLNRELAYVASNGDVFYDVRRFPG 151
Query: 362 YFKLWGRN-------ENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSA 414
Y KL G++ E + KR P DF LWK+AKP EP ++S WGKGRPGWHIECSA
Sbjct: 152 YGKLSGKSLDDLRAGERVEIDTNKRDPLDFVLWKAAKPDEPSWDSPWGKGRPGWHIECSA 211
Query: 415 MASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
M+ H+ G Q D+H GG DL+FPHHENE AQS H S VNYW+H G +R
Sbjct: 212 MSEHYLGDQFDIHGGGQDLQFPHHENEIAQSEGVHGHSH-VNYWMHNGFVR 261
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+KIY+ +T+++ FI ++ Y CG TVYD H+GHA V D + R L+
Sbjct: 2 LKIYDTLTRSRREFIPLTPGEVRMYVCGMTVYDYCHLGHARVLVVFDSVVRWLQ-TLGYK 60
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPL 127
I + ++TD+DDKII +A E + + RY +
Sbjct: 61 VIYVRNITDVDDKIIRRALENHEPFSALTARYIQAM 96
Score = 35.8 bits (81), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 20/156 (12%)
Query: 115 DYKTVAKRYFLPLIFKILHQKVVGSIPTR----GHAVCNVKLDIIRRILEHYFHIHSIVI 170
D T ++R F+PL + V G GHA V D + R L+ I +
Sbjct: 6 DTLTRSRREFIPLTPGEVRMYVCGMTVYDYCHLGHARVLVVFDSVVRWLQ-TLGYKVIYV 64
Query: 171 SSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVL 230
++TD+DDKII +A E + + RY ++ + D V S
Sbjct: 65 RNITDVDDKIIRRALENHEPFSALTARY-------------IQAMEEDAMALGVISPSFE 111
Query: 231 TKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSD 266
+ E+ D ++A+ + ++ E + +G VF D
Sbjct: 112 PRATEYVDSMIAMIESLLNR--ELAYVASNGDVFYD 145
>sp|Q60BG8|SYC_METCA Cysteine--tRNA ligase OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=cysS PE=3 SV=1
Length = 465
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 104/165 (63%), Gaps = 8/165 (4%)
Query: 308 ESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWG 367
E GVLPP R +E I I + I TL++ AY+GS+ V++ V SFP+Y +L G
Sbjct: 98 EDERALGVLPPDHEPRATESIDDILAMIGTLIERGHAYVGSNGDVFYAVASFPNYGRLSG 157
Query: 368 RN-------ENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFF 420
+N E I KR P DF LWKSAKPGEP++ S WG GRPGWHIECSAM++
Sbjct: 158 KNLDELRAGERIEVDEAKRDPLDFVLWKSAKPGEPFWASPWGPGRPGWHIECSAMSTRCL 217
Query: 421 GGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
G D+H GG+DL+FPHHENE AQS + +VNYW+H G +R
Sbjct: 218 GAHFDIHGGGMDLQFPHHENEIAQSEGATGE-HFVNYWMHNGFVR 261
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+KIYN +T+ K F ++ Y CG TVYD H+GHA V D++ R L H +
Sbjct: 2 LKIYNSLTRQKEEFRPLEPRRVRMYVCGMTVYDYCHLGHARVMVVFDMVARYLRH-LGLK 60
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILH--QKVVGSIP 141
+ +VTDIDDKII +A E + R+ + +H ++ +G +P
Sbjct: 61 VTYVRNVTDIDDKIIRRAVENGETIGALTARF-----IEAMHEDERALGVLP 107
Score = 35.8 bits (81), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GHA V D++ R L H + + +VTDIDDKII +A E + R+
Sbjct: 39 GHARVMVVFDMVARYLRH-LGLKVTYVRNVTDIDDKIIRRAVENGETIGALTARF 92
>sp|Q2KIF8|SYCM_BOVIN Cysteine--tRNA ligase, mitochondrial OS=Bos taurus GN=CARS2 PE=2
SV=1
Length = 555
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 110/176 (62%), Gaps = 4/176 (2%)
Query: 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS-FP 360
YE ++ + M VLPPT RV+E +P I +FI+ L+ AY + +VYFD+ S
Sbjct: 135 YEEDFKQDMAALKVLPPTAYLRVTEHVPQIVAFIERLIANGHAYCTAKGNVYFDLQSRGD 194
Query: 361 HYFKLWGRNENITQHAV---KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMAS 417
Y KL G V KR DFALWK+AKP EP++ S WG GRPGWHIECS +AS
Sbjct: 195 RYGKLVGVAPGPVGEPVDSDKRHTSDFALWKAAKPQEPFWGSPWGDGRPGWHIECSTIAS 254
Query: 418 HFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRL 473
FG Q+D+H+GG+DL FPHHENE AQ AFH QW NY+LH+GHL G ++
Sbjct: 255 LVFGSQLDIHSGGVDLAFPHHENEIAQCEAFHQCPQWGNYFLHSGHLHVKGGGEKM 310
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 26/173 (15%)
Query: 14 ATSCESPKWSLPSGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVC 73
A+ W P+GYDTG+K+YN +T+ K P I+ + WY+CGPTVYD H+GHA
Sbjct: 26 ASGARGQGWLQPTGYDTGVKVYNSLTRRKDPLIVSRADAASWYSCGPTVYDHAHLGHACS 85
Query: 74 NVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY---------F 124
V+ DIIRRIL F +++ +TD+DDKII +AN + ++A+ Y
Sbjct: 86 YVRFDIIRRILSRVFGCTVVMVMGITDVDDKIIRRANEMSVSPASLARLYEEDFKQDMAA 145
Query: 125 LPLIFKILHQKVVGSIP----------TRGHAVCNVKLDIIRRILEHYFHIHS 167
L ++ + +V +P GHA C K ++ YF + S
Sbjct: 146 LKVLPPTAYLRVTEHVPQIVAFIERLIANGHAYCTAKGNV-------YFDLQS 191
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GHA V+ DIIRRIL F +++ +TD+DDKII +AN + ++A+ Y
Sbjct: 81 GHACSYVRFDIIRRILSRVFGCTVVMVMGITDVDDKIIRRANEMSVSPASLARLY 135
Score = 37.0 bits (84), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 7/151 (4%)
Query: 111 SLKEDYKTV-AKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIV 169
+L +D+ TV A + L+ Q S RG V L + +EH+F +
Sbjct: 401 ALADDFDTVRAVDAVMDLVHHGNRQLKAASEEPRGPRSPAV-LGAVVASVEHFFETVGVS 459
Query: 170 ISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPV 229
++ + + + A S Y V + RL + ++ ++ P+
Sbjct: 460 LA-----ERQCVPGAGSPAALYSLVEELVRFRLKVRQFALASGEAPGEARRQRLLERQPL 514
Query: 230 LTKCDEFRDELLALGVQIKDQKCEATWQFKD 260
L CD R +L G+ IKD+ +TW+ D
Sbjct: 515 LEACDALRRDLAVHGISIKDRSGSSTWELLD 545
>sp|A8AB68|SYC_IGNH4 Cysteine--tRNA ligase OS=Ignicoccus hospitalis (strain KIN4/I / DSM
18386 / JCM 14125) GN=cysS PE=3 SV=1
Length = 464
Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 109/171 (63%), Gaps = 13/171 (7%)
Query: 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPH 361
Y EYFE M+K V P T RV++ I I F+Q L+D AY+ + VYFDVD +P+
Sbjct: 92 YTNEYFELMKKLKVFP-TVHPRVTDHIDDIIEFVQDLVDKGYAYV-TQSGVYFDVDKYPY 149
Query: 362 YF--------KLWGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413
Y K+W + E + K++P+DFALWK AKPGEPW++S W KGRPGWHIECS
Sbjct: 150 YGQLSGIKDKKMWSQEEFVKD---KKNPYDFALWKCAKPGEPWWDSPWCKGRPGWHIECS 206
Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
M+S + G Q D+H G DL FPHHENE AQS A WV YWLH+G+L
Sbjct: 207 TMSSKYLGKQFDVHGGARDLIFPHHENEIAQSEARFGVRPWVKYWLHSGYL 257
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRI--LEHYFH 89
+K++N +T+ F ++ Y CGPTVYD HIGHA V DII++ L+ Y
Sbjct: 2 LKVFNTLTRRLEDFKPLEPPLVRMYVCGPTVYDHSHIGHARTWVAFDIIKKYLRLKGYNV 61
Query: 90 IHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
IH + ++TDIDDKIIN+A L +K VA Y
Sbjct: 62 IH---VQNITDIDDKIINRARELGVSWKEVADTY 92
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 104 KIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRIL--EH 161
K+ N ED+K + PL+ + V GHA V DII++ L +
Sbjct: 3 KVFNTLTRRLEDFKPLEP----PLVRMYVCGPTVYDHSHIGHARTWVAFDIIKKYLRLKG 58
Query: 162 YFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
Y IH + ++TDIDDKIIN+A L +K VA Y
Sbjct: 59 YNVIH---VQNITDIDDKIINRARELGVSWKEVADTY 92
>sp|Q0A7N3|SYC_ALHEH Cysteine--tRNA ligase OS=Alkalilimnicola ehrlichei (strain MLHE-1)
GN=cysS PE=3 SV=2
Length = 462
Score = 172 bits (436), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 106/169 (62%), Gaps = 10/169 (5%)
Query: 308 ESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWG 367
E E GVLPP R + I I + I+ L++ AY+ D VYF V S+P Y KL G
Sbjct: 98 EDAEALGVLPPDHEPRATGHIDDIIAMIERLVERGHAYVADDGDVYFAVSSYPEYGKLSG 157
Query: 368 -RNENITQHAV------KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFF 420
R E++ A KR P DFALWK+A+PGEP + S WG+GRPGWHIECSAM++
Sbjct: 158 ERQEDLRAGARVEVDEGKRDPVDFALWKAARPGEPAWPSPWGEGRPGWHIECSAMSTQVL 217
Query: 421 GGQVDLHTGGIDLKFPHHENEEAQS-CAFHNQSQWVNYWLHTGHLRGTD 468
G D+H GG+DLKFPHHENE AQS CA +VNYW+H GH+R D
Sbjct: 218 GDHFDIHGGGLDLKFPHHENEIAQSECA--TGHPFVNYWMHNGHVRIND 264
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 8/147 (5%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+ I+N +T+ K F H++ Y CG TVYD H+GHA V D++ R L H +
Sbjct: 2 LHIHNSLTQRKERFEPIQPGHVRMYVCGMTVYDYCHLGHARALVVFDMVARYLRHLGY-R 60
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQ--KVVGSIPTRGHAVCN 149
+ ++TDIDDKII +A L E V +R+ + +H+ + +G +P
Sbjct: 61 VTFVRNITDIDDKIIRRAAELGEPMGAVTERF-----IRAMHEDAEALGVLPPDHEPRAT 115
Query: 150 VKLDIIRRILEHYFHIHSIVISSVTDI 176
+D I ++E ++ D+
Sbjct: 116 GHIDDIIAMIERLVERGHAYVADDGDV 142
Score = 39.7 bits (91), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYF 199
GHA V D++ R L H + + ++TDIDDKII +A L E V +R+
Sbjct: 39 GHARALVVFDMVARYLRHLGY-RVTFVRNITDIDDKIIRRAAELGEPMGAVTERFI 93
>sp|Q4JCA6|SYC_SULAC Cysteine--tRNA ligase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=cysS PE=3 SV=1
Length = 469
Score = 172 bits (435), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 109/170 (64%), Gaps = 11/170 (6%)
Query: 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPH 361
Y +Y ES++ V + RV+ I I F+Q L+D AYI S SVYFDVDSFP
Sbjct: 94 YTKDYMESLKALKV-EIDQHPRVTSHIQEIIDFVQKLVDKGHAYITSSGSVYFDVDSFPS 152
Query: 362 YFKL-------WGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSA 414
Y L W + E I + K++P+DFALWK+ KPGEP++ES WGKGRPGWHIECS
Sbjct: 153 YGLLSGSKKEEWNQGEEIVKE--KKNPYDFALWKAWKPGEPYWESPWGKGRPGWHIECST 210
Query: 415 MASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
M++ + G Q D+H GG+DL FPHHENE AQS + + WV YW+H +L
Sbjct: 211 MSTRYLGEQFDIHGGGVDLVFPHHENERAQSESLLGKI-WVKYWVHVAYL 259
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILE-HYFHI 90
+++YN + + F + +K Y CGPTVYD HIGH V D I R L+ F++
Sbjct: 4 LRLYNTLGRRIETFESFDPLTVKMYVCGPTVYDYVHIGHGRAFVGFDGIVRYLKLRGFNV 63
Query: 91 HSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
I + ++TDIDDKII +AN +D++ + Y
Sbjct: 64 --IRVQNITDIDDKIIKRANETGKDWREIVDYY 94
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 144 GHAVCNVKLDIIRRILE-HYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GH V D I R L+ F++ I + ++TDIDDKII +AN +D++ + Y
Sbjct: 41 GHGRAFVGFDGIVRYLKLRGFNV--IRVQNITDIDDKIIKRANETGKDWREIVDYY 94
>sp|A3DLW5|SYC_STAMF Cysteine--tRNA ligase OS=Staphylothermus marinus (strain ATCC 43588
/ DSM 3639 / F1) GN=cysS PE=3 SV=1
Length = 477
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/170 (50%), Positives = 107/170 (62%), Gaps = 13/170 (7%)
Query: 302 YELEYFESMEKFGV---LPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358
Y +Y ES+ K V L P RV+E I I FIQ L+D AY+ SVYF+VD
Sbjct: 94 YTRDYLESLGKLNVKVDLHP----RVTEHIKEIIEFIQILIDKGYAYVAPSGSVYFEVDK 149
Query: 359 FPHYFKLWGR-NENITQH-----AVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIEC 412
+P Y +L GR N+ + + K+ P+DFALWK+ KPGEP +++ WGKGRPGWHIEC
Sbjct: 150 YPEYGELSGRTNKELWSQEKEFISEKKKPYDFALWKAWKPGEPHWDAPWGKGRPGWHIEC 209
Query: 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTG 462
S M+S + G Q D+H GG DL FPHHENE AQS A WV YW+HTG
Sbjct: 210 SVMSSRYLGRQFDIHGGGTDLIFPHHENERAQSEAAFGVKPWVKYWVHTG 259
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 15/131 (11%)
Query: 31 GIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHI 90
GIKIYN +T+ F + +K Y CGPTVYD HIGH V D ++R L +
Sbjct: 3 GIKIYNTLTRKIEEFKPVSPGFVKMYVCGPTVYDYNHIGHGRVYVVYDALKRYLALRGY- 61
Query: 91 HSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNV 150
H + + ++TDIDDKIIN+A+ K D++ +A+ Y + + +G + NV
Sbjct: 62 HVLHVMNITDIDDKIINRAHQEKRDWREIAETYTRDYL------ESLGKL--------NV 107
Query: 151 KLDIIRRILEH 161
K+D+ R+ EH
Sbjct: 108 KVDLHPRVTEH 118
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GH V D ++R L + H + + ++TDIDDKIIN+A+ K D++ +A+ Y
Sbjct: 41 GHGRVYVVYDALKRYLALRGY-HVLHVMNITDIDDKIINRAHQEKRDWREIAETY 94
>sp|Q96YC3|SYC_SULTO Cysteine--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=cysS PE=3 SV=2
Length = 468
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 80/149 (53%), Positives = 99/149 (66%), Gaps = 10/149 (6%)
Query: 323 RVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKL-------WGRNENITQH 375
RV+ I I +FIQ L+D AY+ SVYFDVDSFP Y L W + E +
Sbjct: 113 RVTYHIKEIINFIQKLIDKGHAYVAKSGSVYFDVDSFPSYGLLSGTKKEEWNQGEEFVKE 172
Query: 376 AVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKF 435
K++P+DFALWK+ KPGEP++ES WGKGRPGWHIECS M+ + G + D+H GGIDL F
Sbjct: 173 --KKNPYDFALWKAWKPGEPYWESPWGKGRPGWHIECSTMSMRYLGEEFDIHGGGIDLIF 230
Query: 436 PHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
PHHENE AQS A + QWV YW+H +L
Sbjct: 231 PHHENERAQSEALLGK-QWVKYWVHVSYL 258
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
I+IYN + + P +K Y CGPTVYD HIGH V D + R L + +
Sbjct: 3 IRIYNTLGRKIQPLETVEPQTVKMYVCGPTVYDYLHIGHGRTFVSFDAMVRYLRLRGY-N 61
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
I + ++TDIDDKII KA +D+ + Y
Sbjct: 62 VIRVQNITDIDDKIIKKAQETGKDWTEIVDFY 93
>sp|Q8BYM8|SYCM_MOUSE Probable cysteine--tRNA ligase, mitochondrial OS=Mus musculus
GN=Cars2 PE=2 SV=2
Length = 551
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 110/173 (63%), Gaps = 6/173 (3%)
Query: 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS-FP 360
+E E+ + M VLPPT RV+E IP I +FI+ ++ AY + SVYFD+ +
Sbjct: 128 FEEEFKQDMAALKVLPPTVYLRVTENIPQIIAFIEGIIAHGHAYSTATGSVYFDLHARGD 187
Query: 361 HYFKLWGRNENITQH---AVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMAS 417
Y KL + T + KR DFALWK+AKP E ++ S WG GRPGWHIECS MAS
Sbjct: 188 KYGKLVNTVPSATAEPGDSDKRHSSDFALWKAAKPQEVFWASPWGDGRPGWHIECSTMAS 247
Query: 418 HFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL--RGTD 468
FG +D+HTGGIDL FPHHENE AQS FH QW NY+LH+GHL +GT+
Sbjct: 248 EVFGSHLDIHTGGIDLAFPHHENEIAQSEVFHQCQQWGNYFLHSGHLHVKGTE 300
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 22 WSLPSGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIR 81
W P G DTG++++N +T K P I+ + + WY+CGPTVYD H+GHA V+ DIIR
Sbjct: 27 WQRPQGQDTGVQVHNSLTGRKEPLIVARSDAVSWYSCGPTVYDHAHLGHACSYVRFDIIR 86
Query: 82 RILEHYFHIHSIVISSVTDIDDKIINKANSL 112
RIL F + ++ S+TD+DDKII +AN +
Sbjct: 87 RILTRVFGCNVVMAMSITDVDDKIIKRANEM 117
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSL 187
GHA V+ DIIRRIL F + ++ S+TD+DDKII +AN +
Sbjct: 74 GHACSYVRFDIIRRILTRVFGCNVVMAMSITDVDDKIIKRANEM 117
>sp|B8GNT5|SYC_THISH Cysteine--tRNA ligase OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=cysS PE=3 SV=1
Length = 460
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 102/165 (61%), Gaps = 8/165 (4%)
Query: 308 ESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWG 367
E E GVLPP+ R +E I + + I TL++ AY G + VY+ V F Y +L G
Sbjct: 98 EDAEALGVLPPSAEPRATEHIDGMLAMIGTLVERGYAYAGDNGDVYYAVAKFEPYGRLSG 157
Query: 368 R-------NENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFF 420
+ E + KR P DF LWK+AKPGEP ++S WG GRPGWHIECSAM++H+
Sbjct: 158 KRLEDLRAGERVAPDEAKRDPLDFVLWKAAKPGEPAWDSPWGPGRPGWHIECSAMSTHYL 217
Query: 421 GGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
G D+H GG DL+FPHHENE AQS A + +VNYW+H G +R
Sbjct: 218 GNHFDIHGGGQDLQFPHHENEIAQSEAATCE-HFVNYWMHNGFVR 261
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
++I+N +T+ K F ++ Y CG TVYD H+GHA V D++ R L+
Sbjct: 2 LQIHNSLTRRKETFTPMEPGRVRMYVCGMTVYDYCHLGHARVLVVFDVVYRYLKA-LGFD 60
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPL 127
I ++TDIDDKII +A ED + + R+ +
Sbjct: 61 VTYIRNITDIDDKIIRRAAENGEDIRALTDRFIAAM 96
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRL 202
GHA V D++ R L+ I ++TDIDDKII +A ED + + R+ +
Sbjct: 39 GHARVLVVFDVVYRYLKA-LGFDVTYIRNITDIDDKIIRRAAENGEDIRALTDRFIAAM 96
>sp|Q9HA77|SYCM_HUMAN Probable cysteine--tRNA ligase, mitochondrial OS=Homo sapiens
GN=CARS2 PE=1 SV=1
Length = 564
Score = 165 bits (418), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 105/167 (62%), Gaps = 4/167 (2%)
Query: 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS-FP 360
YE ++ + M VLPPT RV+E IP I SFI+ ++ AY + +VYFD+ S
Sbjct: 143 YEEDFKQDMAALKVLPPTVYLRVTENIPQIISFIEGIIARGNAYSTAKGNVYFDLKSRGD 202
Query: 361 HYFKLWGRNENITQHAV---KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMAS 417
Y KL G KR DFALWK+AKP E ++ S WG GRPGWHIECSA+AS
Sbjct: 203 KYGKLVGVVPGPVGEPADSDKRHASDFALWKAAKPQEVFWASPWGPGRPGWHIECSAIAS 262
Query: 418 HFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
FG Q+D+H+GGIDL FPHHENE AQ FH QW NY+LH+GHL
Sbjct: 263 MVFGSQLDIHSGGIDLAFPHHENEIAQCEVFHQCEQWGNYFLHSGHL 309
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 66/110 (60%)
Query: 14 ATSCESPKWSLPSGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVC 73
A+ W P+G +TG+++YN +T K P I+ + WY+CGPTVYD H+GHA
Sbjct: 34 ASGGRGRAWLQPTGRETGVQVYNSLTGRKEPLIVAHAEAASWYSCGPTVYDHAHLGHACS 93
Query: 74 NVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
V+ DIIRRIL F +++ +TD+DDKII +AN + ++A Y
Sbjct: 94 YVRFDIIRRILTKVFGCSIVMVMGITDVDDKIIKRANEMNISPASLASLY 143
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GHA V+ DIIRRIL F +++ +TD+DDKII +AN + ++A Y
Sbjct: 89 GHACSYVRFDIIRRILTKVFGCSIVMVMGITDVDDKIIKRANEMNISPASLASLY 143
>sp|Q3SHN1|SYC_THIDA Cysteine--tRNA ligase OS=Thiobacillus denitrificans (strain ATCC
25259) GN=cysS PE=3 SV=1
Length = 454
Score = 165 bits (418), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 102/172 (59%), Gaps = 8/172 (4%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
R+ E E GVLPP R + ++ + + I L+D AY + VY+ V FP
Sbjct: 91 RFIAEMHEDERALGVLPPDHEPRATAYVAQMLALIAQLVDRGLAYAAPNADVYYSVRGFP 150
Query: 361 HYFKLWGRN-------ENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413
Y +L G++ E + KR P DF LWK+AKPGEP +ES WG+GRPGWHIECS
Sbjct: 151 AYGRLSGKSLDELRAGERVEVDPNKRDPMDFVLWKAAKPGEPAWESPWGQGRPGWHIECS 210
Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
AM++ G D+H GG DL+FPHHENE AQS H + +VNYWLH G +R
Sbjct: 211 AMSAELLGQHFDIHGGGQDLQFPHHENEIAQSEGAHGCT-FVNYWLHNGFVR 261
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+ I N +T+TK F+ + ++ Y CG TVYD H+GHA V D++ R L +
Sbjct: 2 LHITNSLTRTKEEFVPLSPGRVRMYVCGMTVYDLCHLGHARVFVVFDMVTRWLRASGYAV 61
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPL 127
V ++TDIDDKII +A+ KE + +R+ +
Sbjct: 62 EYV-RNITDIDDKIIKRAHENKETPAALTERFIAEM 96
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 118 TVAKRYFLPLIFKILHQKVVG----SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSV 173
T K F+PL + V G + GHA V D++ R L + V ++
Sbjct: 9 TRTKEEFVPLSPGRVRMYVCGMTVYDLCHLGHARVFVVFDMVTRWLRASGYAVEYV-RNI 67
Query: 174 TDIDDKIINKANSLKEDYKTVAKRYFLRL 202
TDIDDKII +A+ KE + +R+ +
Sbjct: 68 TDIDDKIIKRAHENKETPAALTERFIAEM 96
>sp|Q9YBK6|SYC_AERPE Cysteine--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=cysS PE=3 SV=2
Length = 472
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 108/171 (63%), Gaps = 12/171 (7%)
Query: 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPH 361
Y +Y E + G+ RV++ I I FI+ L++ AY+ SVYF+VD +P
Sbjct: 92 YSRDYLEGLGSLGI-QIDHHPRVTDHISDIIRFIEGLIEKGYAYVAESGSVYFEVDKYPG 150
Query: 362 YFKL--------WGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413
Y L W + E++ K+SP+DFALWK+AKPGEP +ES WG+GRPGWHIECS
Sbjct: 151 YGMLSGHLSKEAWRQEEDVLHE--KKSPYDFALWKAAKPGEPSWESPWGRGRPGWHIECS 208
Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
M+S + G ++D+H GG+DL FPHHENE AQS ++ +WV YWLH +L
Sbjct: 209 VMSSRYLGSRIDIHGGGVDLVFPHHENERAQSESYFGH-RWVRYWLHASYL 258
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILE----HY 87
I+++N + + K F + + Y CGPTVYD HIGHA D I+R L
Sbjct: 2 IRVFNTLGRRKEVFNPYSPPLVGMYVCGPTVYDYTHIGHARTFTVFDAIKRYLRLRGYDV 61
Query: 88 FHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
FH+ +I TDIDDKIIN+A D++ + + Y
Sbjct: 62 FHVQNI-----TDIDDKIINRAREEGRDWREIVREY 92
Score = 38.9 bits (89), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 117 KTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILE----HYFHIHSIVISS 172
K V Y PL+ + V GHA D I+R L FH+ +I
Sbjct: 12 KEVFNPYSPPLVGMYVCGPTVYDYTHIGHARTFTVFDAIKRYLRLRGYDVFHVQNI---- 67
Query: 173 VTDIDDKIINKANSLKEDYKTVAKRY 198
TDIDDKIIN+A D++ + + Y
Sbjct: 68 -TDIDDKIINRAREEGRDWREIVREY 92
>sp|B0TLV2|SYC_SHEHH Cysteine--tRNA ligase OS=Shewanella halifaxensis (strain HAW-EB4)
GN=cysS PE=3 SV=1
Length = 459
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 97/165 (58%), Gaps = 8/165 (4%)
Query: 305 EYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFK 364
E + + + P R ++ IP I ++ L++ AY+ S V F V SFP Y +
Sbjct: 95 EMHKDFDSLNMARPDNEPRATQHIPEIIDMVERLIERDHAYVASSGDVLFSVSSFPEYGR 154
Query: 365 LWGRNENITQHAV-------KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMAS 417
L G+N Q KR P DF LWK +KPGEP +ES WG GRPGWHIECSAM S
Sbjct: 155 LSGQNLEQLQAGARVEVEDTKRDPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNS 214
Query: 418 HFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTG 462
G D+H GG DL+FPHHENE AQSC H+ + +VNYW+HTG
Sbjct: 215 KHLGNHFDIHGGGSDLQFPHHENEIAQSCCAHD-TPYVNYWMHTG 258
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 7/143 (4%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+K+YN +T+ K F+ + Y CG T+YD HIGH V D+I R L Y
Sbjct: 2 LKLYNSLTRQKEQFVPLQPGKVGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYL-RYSGYD 60
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPL--IFKILHQKVVGSIPTRGHAVCN 149
++TD+DDKII +AN E ++ +R + F L+ + P +
Sbjct: 61 VNFQRNITDVDDKIIKRANENNESCDSLTERLIAEMHKDFDSLNMARPDNEPRATQHIPE 120
Query: 150 VKLDIIRRILEHYFHIHSIVISS 172
+ +D++ R++E H+ V SS
Sbjct: 121 I-IDMVERLIE---RDHAYVASS 139
>sp|A4YIG5|SYC_METS5 Cysteine--tRNA ligase OS=Metallosphaera sedula (strain ATCC 51363 /
DSM 5348) GN=cysS PE=3 SV=1
Length = 465
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 102/149 (68%), Gaps = 11/149 (7%)
Query: 323 RVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKL-------WGRNENITQH 375
+V+ I I F+Q L+D+ AY+ ++ SVYFDVD++P Y +L W + E I +
Sbjct: 111 KVTTHIKEIIDFVQRLIDSGHAYV-ANGSVYFDVDTYPGYGELSNVKKEEWDQGEEIVKE 169
Query: 376 AVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKF 435
KR P+DFALWK+ KPGEP++ES WGKGRPGWHIECS M++ + G ++D+H GG+DL F
Sbjct: 170 --KRHPYDFALWKAYKPGEPYWESPWGKGRPGWHIECSTMSTRYLGTKIDIHGGGMDLVF 227
Query: 436 PHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
PHHENE AQ+ + S WV YW+H L
Sbjct: 228 PHHENERAQTESL-TGSTWVKYWMHVAFL 255
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
++++N + K F N +K Y CGPTVYD HIGH V D + R L + +
Sbjct: 1 MQVFNTLGKRLQSFEPHEPNTVKMYVCGPTVYDEVHIGHGRTFVAFDAMSRYLRVKGY-N 59
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
+ + ++TDIDDKIINKA L + + V++ Y
Sbjct: 60 VVRVQNITDIDDKIINKARELGKSWNEVSEYY 91
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY---FL 200
GH V D + R L + + + + ++TDIDDKIINKA L + + V++ Y +L
Sbjct: 38 GHGRTFVAFDAMSRYLRVKGY-NVVRVQNITDIDDKIINKARELGKSWNEVSEYYSKSYL 96
Query: 201 RLIFKI-----LHQKVVR--KLAIDLKKAKVDSG 227
I + +H KV K ID + +DSG
Sbjct: 97 EHIGALKVKIDMHPKVTTHIKEIIDFVQRLIDSG 130
>sp|A8F596|SYC_THELT Cysteine--tRNA ligase OS=Thermotoga lettingae (strain ATCC BAA-301
/ DSM 14385 / TMO) GN=cysS PE=3 SV=1
Length = 463
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 105/170 (61%), Gaps = 9/170 (5%)
Query: 305 EYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFK 364
EY+ GV P + + S+F+P I + IQ L+ AY+ D VYF V SFP Y +
Sbjct: 94 EYWRDSMALGVRAPNFSPKTSDFVPEIINAIQNLIAKNHAYV-VDGDVYFSVRSFPRYGE 152
Query: 365 LWGRN-------ENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMAS 417
L R+ I + KR P DFALWKSAKPGEP+++S WG GRPGWHIECS M++
Sbjct: 153 LSHRSIDELKAGARIDLNEKKRDPLDFALWKSAKPGEPYWKSPWGNGRPGWHIECSVMST 212
Query: 418 HFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGT 467
G +D+H GG DL FPHHENE+AQS A ++ +V YWLH G ++ T
Sbjct: 213 KLLGTTLDIHAGGEDLIFPHHENEKAQSEALTGKT-FVKYWLHNGMIKYT 261
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
++ YN ++K F ++ Y CGPTVY HIG+A V D +RR LE Y
Sbjct: 1 MRFYNTLSKHIEEFKENEPGIVRMYVCGPTVYGLIHIGNARPMVVFDALRRYLE-YRGYR 59
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
I++ + TDIDDKIINK+ D+K +++ +
Sbjct: 60 VIMVQNFTDIDDKIINKSIEFSVDFKDISETF 91
Score = 40.0 bits (92), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 111 SLKEDYKTVAKRYFL-PLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIV 169
KE+ + + Y P ++ ++H G+A V D +RR LE Y I+
Sbjct: 13 EFKENEPGIVRMYVCGPTVYGLIHI---------GNARPMVVFDALRRYLE-YRGYRVIM 62
Query: 170 ISSVTDIDDKIINKANSLKEDYKTVAKRY 198
+ + TDIDDKIINK+ D+K +++ +
Sbjct: 63 VQNFTDIDDKIINKSIEFSVDFKDISETF 91
>sp|Q0AJJ4|SYC_NITEC Cysteine--tRNA ligase OS=Nitrosomonas eutropha (strain C91) GN=cysS
PE=3 SV=1
Length = 467
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 107/171 (62%), Gaps = 12/171 (7%)
Query: 306 YFESMEK----FGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPH 361
Y ++ME+ G++ P+ R +E I + + I++LL AY+ ++ V++DV FP
Sbjct: 92 YIQAMEEDAAALGIISPSFEPRATECIESMVTMIESLLSKGLAYVANNGDVFYDVRRFPG 151
Query: 362 YFKLWGRN-------ENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSA 414
Y KL G++ E + KR P DF LWK+AKP EP ++S WGKGRPGWHIECSA
Sbjct: 152 YGKLSGKSLDDLRAGERVEIDTNKRDPLDFVLWKAAKPDEPSWDSPWGKGRPGWHIECSA 211
Query: 415 MASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
M+ H+ G + D+H GG DL+FPHHENE AQS H VNYW+H G +R
Sbjct: 212 MSGHYLGERFDIHGGGQDLQFPHHENEIAQSEGVHGHPH-VNYWMHNGFVR 261
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+KIY+ +T+++ FI +K Y CG TVYD H+GHA V D + R L+
Sbjct: 2 LKIYDTLTRSRREFIPLTPGKVKMYVCGMTVYDHCHLGHARVLVVFDSVVRWLQ-TLDYE 60
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPL 127
+ ++TDIDDKII +A E + + RY +
Sbjct: 61 VTYVRNITDIDDKIIRRALENHEPFGALTARYIQAM 96
>sp|Q65UY1|SYC_MANSM Cysteine--tRNA ligase OS=Mannheimia succiniciproducens (strain
MBEL55E) GN=cysS PE=3 SV=2
Length = 458
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 100/167 (59%), Gaps = 8/167 (4%)
Query: 305 EYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFK 364
E + + +L P R ++ IP I + ++TL+ AY+ D V FDV+SF Y
Sbjct: 95 EMHKDFDALNILRPDVEPRATKHIPEIIAMVETLIRRGHAYVAEDGDVMFDVESFQKYGA 154
Query: 365 LWGRNENITQ-------HAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMAS 417
L +N Q +VK++P DF LWK +KP EP ++S WGKGRPGWHIECSAM
Sbjct: 155 LSRQNLEQLQAGARVEIKSVKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMND 214
Query: 418 HFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
G D+H GG DL FPHHENE AQSC H+ ++VNYWLHTG L
Sbjct: 215 KELGNHFDIHGGGSDLMFPHHENEIAQSCCAHD-GEYVNYWLHTGML 260
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+KI+N +T+ K F N N + Y CG TVYD H GH V D+I R L Y
Sbjct: 2 LKIFNTLTREKEEFKPINPNKVGMYVCGVTVYDLCHFGHGRTFVSFDVITRYL-RYLGYD 60
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPL 127
+ ++TD+DDKII +A E + +R +
Sbjct: 61 LRYVRNITDVDDKIIKRALENNETCDQLVERMIAEM 96
>sp|A6VQ79|SYC_ACTSZ Cysteine--tRNA ligase OS=Actinobacillus succinogenes (strain ATCC
55618 / 130Z) GN=cysS PE=3 SV=1
Length = 459
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/167 (47%), Positives = 100/167 (59%), Gaps = 8/167 (4%)
Query: 305 EYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFK 364
E + + +L P R ++ IP I + + LL AY+ +D V FDV+SF Y
Sbjct: 95 EMHKDFDALNILRPDAEPRATKHIPEIIAMVDALLQRGHAYLAADGDVMFDVESFQKYGA 154
Query: 365 LWGRNENITQ-------HAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMAS 417
L +N Q +VK++P DF LWK +KP EP ++S WGKGRPGWHIECSAM S
Sbjct: 155 LSRQNLEQLQAGARVEIKSVKKNPMDFVLWKMSKPNEPSWDSPWGKGRPGWHIECSAMNS 214
Query: 418 HFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
G D+H GG DL FPHHENE AQSC H+ ++VNYWLHTG L
Sbjct: 215 KELGNHFDIHGGGSDLMFPHHENEIAQSCCAHD-GEYVNYWLHTGML 260
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+KI+N +T+ K F N+N + Y CG TVYD H GH V D+I R L + +
Sbjct: 2 LKIFNTLTREKEEFKPINQNQVGMYVCGVTVYDLCHFGHGRTFVSFDVITRYL-RFLGYN 60
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPL 127
+ ++TD+DDKII +A E + +R +
Sbjct: 61 LRYVRNITDVDDKIIKRALENNETCDQLVERMIAEM 96
>sp|A8H617|SYC_SHEPA Cysteine--tRNA ligase OS=Shewanella pealeana (strain ATCC 700345 /
ANG-SQ1) GN=cysS PE=3 SV=1
Length = 459
Score = 162 bits (410), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 8/165 (4%)
Query: 305 EYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFK 364
E + + P R + +P I ++ L++ + AY+ S+ V F V SFP Y +
Sbjct: 95 EMHRDFDALNMARPDNEPRATLHMPEIIEMVEKLIEREHAYVASNGDVLFSVSSFPEYGR 154
Query: 365 LWGRNENITQHAV-------KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMAS 417
L G+N Q KR P DF LWK +KPGEP +ES WG GRPGWHIECSAM S
Sbjct: 155 LSGQNLEQLQAGARVEVEDAKRDPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNS 214
Query: 418 HFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTG 462
G D+H GG DL+FPHHENE AQSC H+ + +VNYW+HTG
Sbjct: 215 KHLGNHFDIHGGGSDLQFPHHENEIAQSCCAHD-TPYVNYWMHTG 258
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+K+YN +T+ K F+ + Y CG T+YD HIGH V D+I R L Y
Sbjct: 2 LKLYNSLTRQKEQFVPLQPGKVGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYL-RYSGYD 60
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKR 122
++TD+DDKII +AN KE ++ +R
Sbjct: 61 VNFQRNITDVDDKIIKRANENKESCDSLTER 91
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRL 202
GH V D+I R L Y ++TD+DDKII +AN KE ++ +R +
Sbjct: 39 GHGRTFVSFDMIVRYL-RYSGYDVNFQRNITDVDDKIIKRANENKESCDSLTERLIAEM 96
>sp|Q2Y7U5|SYC_NITMU Cysteine--tRNA ligase OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=cysS PE=3 SV=1
Length = 464
Score = 162 bits (410), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 106/186 (56%), Gaps = 12/186 (6%)
Query: 306 YFESMEK----FGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPH 361
+ ++ME+ GV PP+ R + + + + IQ L+D K AY S+ VY+ V FP
Sbjct: 92 FIQAMEEDAAALGVEPPSWEPRATRHVEDMIAMIQVLVDKKLAYPASNGDVYYAVHRFPG 151
Query: 362 YFKLWGRN-------ENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSA 414
Y KL G++ E + K P DF LWK+AKPGEP ++S WG GRPGWHIECSA
Sbjct: 152 YGKLSGKSLDELRAGERVIVDPHKNDPLDFVLWKAAKPGEPQWDSPWGPGRPGWHIECSA 211
Query: 415 MASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLR 474
M H+ G D+H GG DL+FPHHENE AQS H +VNYW+H G +R D
Sbjct: 212 MGEHYLGEHFDIHGGGQDLQFPHHENEIAQSEGAHGHP-FVNYWMHNGFVRVNDEKMSKS 270
Query: 475 AARFIT 480
F T
Sbjct: 271 LGNFFT 276
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILE-HYFHI 90
+KI+N + + K FI +K Y CG TVYD H+GHA V D+++R + F +
Sbjct: 2 LKIHNSLAREKQEFIPLTPGKVKVYVCGMTVYDYCHLGHARVMVVFDMVQRWFRANRFDV 61
Query: 91 HSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
+ ++TDIDDKII +A KE + + R+
Sbjct: 62 --TYVRNITDIDDKIIRRAQENKESIEALTARF 92
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 144 GHAVCNVKLDIIRRILE-HYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GHA V D+++R + F + + ++TDIDDKII +A KE + + R+
Sbjct: 39 GHARVMVVFDMVQRWFRANRFDV--TYVRNITDIDDKIIRRAQENKESIEALTARF 92
>sp|A1WT89|SYC_HALHL Cysteine--tRNA ligase OS=Halorhodospira halophila (strain DSM 244 /
SL1) GN=cysS PE=3 SV=1
Length = 459
Score = 162 bits (409), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 99/169 (58%), Gaps = 10/169 (5%)
Query: 308 ESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWG 367
E GV PP R +E + + + I+ L+ AY+G + VYF V SFP Y KL G
Sbjct: 98 EDCSALGVEPPDHEPRATERLESMIALIEELIAGGHAYVGDNGDVYFSVASFPEYGKLSG 157
Query: 368 R-------NENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFF 420
R I K P DF LWK+AK GEP + S WG GRPGWHIECSAM+
Sbjct: 158 RRVEELRSGSRIEPDEAKHDPVDFVLWKAAKSGEPAWPSPWGDGRPGWHIECSAMSRDLL 217
Query: 421 GGQVDLHTGGIDLKFPHHENEEAQS-CAFHNQSQWVNYWLHTGHLRGTD 468
G D+H GG+DL+FPHHENE AQS CA + ++VNYW+H GH+R D
Sbjct: 218 GSHFDIHGGGVDLQFPHHENEIAQSECA--SGHRFVNYWMHNGHVRIDD 264
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+KI+N +T K PF ++ Y CG TVYD H+GHA V D + R L +
Sbjct: 2 LKIHNSLTGAKEPFQPIEPGQVRIYVCGMTVYDFCHLGHARALVVFDAVVRYL-RWLGYE 60
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPL 127
+ ++TDIDDKII +A E + R+ +
Sbjct: 61 VTYVRNITDIDDKIIRRAAENGEPMTALTDRFIRAM 96
>sp|A8FTH6|SYC_SHESH Cysteine--tRNA ligase OS=Shewanella sediminis (strain HAW-EB3)
GN=cysS PE=3 SV=1
Length = 459
Score = 161 bits (408), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 94/152 (61%), Gaps = 8/152 (5%)
Query: 318 PTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWGRNENITQHAV 377
P R + IP I ++ L++ + AY+ + V F V SFP Y +L G+N + Q
Sbjct: 108 PDFEPRATLHIPEIIDMVEKLIEKEHAYVSGNGDVLFSVSSFPEYGRLSGQNLDQLQAGA 167
Query: 378 -------KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGG 430
KR P DF LWK +KPGEP +ES WG GRPGWHIECSAM S G D+H GG
Sbjct: 168 RVEVEDTKRDPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGQHFDIHGGG 227
Query: 431 IDLKFPHHENEEAQSCAFHNQSQWVNYWLHTG 462
DL+FPHHENE AQSC HN + +VNYW+HTG
Sbjct: 228 SDLQFPHHENEIAQSCCAHN-TPYVNYWMHTG 258
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+K+YN +T+ K F + Y CG T+YD HIGH V D+I R L Y
Sbjct: 2 LKLYNSLTRQKEEFKPLQPGKVGMYVCGITIYDLCHIGHGRTFVSFDMIVRYL-RYSGYD 60
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKR 122
+ ++TD+DDKII +AN KE +++ +R
Sbjct: 61 VNFLRNITDVDDKIIKRANENKESCESLTER 91
Score = 35.8 bits (81), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKR 197
GH V D+I R L Y + ++TD+DDKII +AN KE +++ +R
Sbjct: 39 GHGRTFVSFDMIVRYL-RYSGYDVNFLRNITDVDDKIIKRANENKESCESLTER 91
>sp|A3QFX9|SYC_SHELP Cysteine--tRNA ligase OS=Shewanella loihica (strain ATCC BAA-1088 /
PV-4) GN=cysS PE=3 SV=1
Length = 459
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 99/169 (58%), Gaps = 8/169 (4%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
R E + + + P R ++ +P I ++ LL+ AYI + V F V SFP
Sbjct: 91 RLTQEMYHDFDALNMKRPDFEPRATQHMPEIIEMVERLLERDHAYIADNGDVLFSVASFP 150
Query: 361 HYFKLWGRNENITQHAV-------KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413
Y +L G+N + Q KR P DF LWK +KPGEP ++S WG GRPGWHIECS
Sbjct: 151 EYGRLSGQNLDQLQAGARVEVDENKRDPMDFVLWKMSKPGEPTWDSPWGPGRPGWHIECS 210
Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTG 462
AM S G D+H GG DL+FPHHENE AQSC H+ + +VNYW+HTG
Sbjct: 211 AMNSKHLGEHFDIHGGGSDLQFPHHENEIAQSCCAHD-TPYVNYWMHTG 258
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+K+YN +T+ K F + Y CG T+YD HIGH V D+I R L Y
Sbjct: 2 LKLYNSLTRQKEEFKPIQPGKVGMYVCGVTIYDLCHIGHGRTFVAFDMIVRYL-RYIGYD 60
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLI--FKILHQKVVGSIPTRGHAVCN 149
++TD+DDKII +A E + +R + F L+ K P +
Sbjct: 61 VNFHRNITDVDDKIIKRATENGESCDALTERLTQEMYHDFDALNMKRPDFEPRATQHMPE 120
Query: 150 VKLDIIRRILE 160
+ ++++ R+LE
Sbjct: 121 I-IEMVERLLE 130
>sp|Q07ZX5|SYC_SHEFN Cysteine--tRNA ligase OS=Shewanella frigidimarina (strain NCIMB
400) GN=cysS PE=3 SV=1
Length = 460
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 98/165 (59%), Gaps = 8/165 (4%)
Query: 305 EYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFK 364
E + + + P R + I I +Q LLD AY+ S+ V F V SFP Y +
Sbjct: 95 EMHQDFDALNMKRPDFEPRATLHIEEIIDMVQRLLDRDHAYVASNGDVLFSVASFPEYGQ 154
Query: 365 LWGRNENITQHAV-------KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMAS 417
L G+N + Q KR+P DF LWK +KPGEP +ES WG GRPGWHIECSAM S
Sbjct: 155 LSGQNLDQLQAGARVEIDNAKRNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNS 214
Query: 418 HFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTG 462
G D+H GG DL+FPHHENE AQSC H+ + +VNYW+HTG
Sbjct: 215 KHLGLHFDIHGGGSDLQFPHHENEIAQSCCAHD-TPYVNYWMHTG 258
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+KIYN I++ K F N + Y CG T+YD HIGH V D+I R L Y
Sbjct: 2 LKIYNSISRDKQEFKPINPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYL-RYIGYE 60
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPL--IFKILHQKVVGSIPTRGHAVCN 149
++TD+DDKII +A E +++ +R + F L+ K P +
Sbjct: 61 VNFQRNITDVDDKIIKRAAENNESCESLTERLIAEMHQDFDALNMKRPDFEPRATLHIEE 120
Query: 150 VKLDIIRRILE 160
+ +D+++R+L+
Sbjct: 121 I-IDMVQRLLD 130
>sp|B5YID4|SYC_THEYD Cysteine--tRNA ligase OS=Thermodesulfovibrio yellowstonii (strain
ATCC 51303 / DSM 11347 / YP87) GN=cysS PE=3 SV=1
Length = 487
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 107/172 (62%), Gaps = 11/172 (6%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYI---GSDHSVYFDVD 357
+Y EY++ M++ G+ + +E I + IQTL++ AY G SVYF V+
Sbjct: 90 KYTGEYYKDMDRLGITRADIEPKATEHINEMIEIIQTLINKGYAYEIEEGQAKSVYFSVE 149
Query: 358 SFPHYFKLWGR--NENITQHAV-----KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHI 410
FP Y KL + +E I+ V K+SP DFALWK++KPGEPW++S WGKGRPGWHI
Sbjct: 150 KFPQYGKLSKKKIDELISGARVEVDERKKSPLDFALWKASKPGEPWWDSPWGKGRPGWHI 209
Query: 411 ECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTG 462
ECSAM+ + G D+H GG DL FPHHENE AQS AF + + YW+H G
Sbjct: 210 ECSAMSIKYLGETFDIHGGGADLIFPHHENEIAQSEAFTGKP-FAKYWIHNG 260
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
++++N +T F N + YACG TVYD HIGHA V D+I + L Y
Sbjct: 1 MRVFNTLTDKLEEFKPINDKKVGIYACGVTVYDLCHIGHARSAVVFDVIVKYL-RYKGYE 59
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
+ + TDIDDKIIN+AN +K +A++Y
Sbjct: 60 VKFVKNFTDIDDKIINRANKEGVSWKEIAEKY 91
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GHA V D+I + L Y + + TDIDDKIIN+AN +K +A++Y
Sbjct: 38 GHARSAVVFDVIVKYL-RYKGYEVKFVKNFTDIDDKIINRANKEGVSWKEIAEKY 91
>sp|B9LZV4|SYC_GEOSF Cysteine--tRNA ligase OS=Geobacter sp. (strain FRC-32) GN=cysS PE=3
SV=1
Length = 494
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 104/174 (59%), Gaps = 11/174 (6%)
Query: 297 LFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAY-IGSDHSVYFD 355
L + R+ E+ ME+ G+ PT + +E I I S +QTL+D AY G D V F
Sbjct: 88 LISERFIKEFDRDMERLGLKLPTCQPKATEHIDEIISLVQTLIDKDFAYQAGGD--VNFC 145
Query: 356 VDSFPHYFKLWGRNENITQHAV-------KRSPFDFALWKSAKPGEPWYESAWGKGRPGW 408
V+ F Y KL GR Q KR P DFALWK AKPGEP++ES WGKGRPGW
Sbjct: 146 VEKFDSYLKLSGRTLEDMQAGARIEVDERKRHPMDFALWKEAKPGEPFWESPWGKGRPGW 205
Query: 409 HIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTG 462
HIECSAM+ + G D+H GG DL FPHHENE AQS A + +VNYWLH G
Sbjct: 206 HIECSAMSMKYLGTTFDIHGGGKDLIFPHHENEIAQSEAATGKP-FVNYWLHNG 258
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 31 GIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHI 90
G+++YN ++ K F+ +K Y CG TVYD HIGHA NV D+I R H +
Sbjct: 2 GLRVYNTLSGNKEEFVPVEPGKVKMYVCGVTVYDHCHIGHARANVVFDVIYRYFCH-LGL 60
Query: 91 HSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
+ + TDIDDKIIN+AN Y +++R+
Sbjct: 61 DVTYVRNYTDIDDKIINRANREGVTYDLISERF 93
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GHA NV D+I R H + + + TDIDDKIIN+AN Y +++R+
Sbjct: 40 GHARANVVFDVIYRYFCH-LGLDVTYVRNYTDIDDKIINRANREGVTYDLISERF 93
>sp|A6VG07|SYC_METM7 Cysteine--tRNA ligase OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=cysS PE=3 SV=1
Length = 476
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 111/182 (60%), Gaps = 9/182 (4%)
Query: 306 YFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKL 365
+ M V P +V+E IP I +FI+ L++ AY +++ VYF+V F +Y KL
Sbjct: 96 FLNDMATLKVKPADIYPKVTEHIPEIIAFIEKLIEKGFAY-KTENGVYFEVKKFENYGKL 154
Query: 366 WGRN-ENITQHA------VKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASH 418
N E++ A K++P DFALWK+AKPGEP +ES +G+GRPGWHIECSAM+S
Sbjct: 155 SNINLEDLISGARIEPSDEKKNPEDFALWKTAKPGEPKWESPFGEGRPGWHIECSAMSSK 214
Query: 419 FFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARF 478
+ G Q D+H GG DL FPHHENE AQS A+ + WVNYWLHTG + F
Sbjct: 215 YLGEQFDIHGGGRDLSFPHHENEIAQSVAYSGK-DWVNYWLHTGFVMVNGEKMSKSLGNF 273
Query: 479 IT 480
IT
Sbjct: 274 IT 275
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+K+YN +T+ + F N+N +K Y CGPTVYD H+GH V DIIRR LEH +
Sbjct: 2 LKVYNTLTRKEEEFKPLNENEVKMYVCGPTVYDHTHLGHGRTYVSFDIIRRYLEHIGYTV 61
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
++VI + TDIDDKII ++ ++ K +++ +
Sbjct: 62 NLVI-NFTDIDDKIIKRSQEKGKNPKELSETF 92
Score = 40.0 bits (92), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GH V DIIRR LEH + ++VI + TDIDDKII ++ ++ K +++ +
Sbjct: 39 GHGRTYVSFDIIRRYLEHIGYTVNLVI-NFTDIDDKIIKRSQEKGKNPKELSETF 92
>sp|Q3A9P1|SYC_CARHZ Cysteine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=cysS PE=3 SV=1
Length = 465
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 108/171 (63%), Gaps = 9/171 (5%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
+Y +EYF+ ++ GV T +V+E IP I ++ L++ AY + +VYF VDSF
Sbjct: 90 KYIIEYFKDADRLGVKRATVHPKVTEHIPEIIEMVKGLIEKGYAY-EVEGNVYFAVDSFS 148
Query: 361 HYFKLWGRN-ENITQHA------VKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413
Y KL GR+ E + A K++P DFALWK AKPGEP++ES WG GRPGWHIECS
Sbjct: 149 DYGKLSGRDLEELKAGARVEVDEKKKNPLDFALWKKAKPGEPYWESPWGPGRPGWHIECS 208
Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
AM+ + G D+H GG DL FPHHENE AQS AF + + YW+H G +
Sbjct: 209 AMSLKYLGENFDIHGGGADLVFPHHENEVAQSEAFTGKP-FARYWMHNGFI 258
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+KIYN +TKTK FI + + Y CGPT Y+ HIG+A V D +RR E Y
Sbjct: 1 MKIYNTLTKTKEEFIPREPGKVYMYVCGPTTYNYIHIGNARPIVFFDTVRRYFE-YKGFE 59
Query: 92 SIVISSVTDIDDKIINKA 109
I + + TDIDDKIIN+A
Sbjct: 60 VIYVQNFTDIDDKIINRA 77
>sp|Q83BL7|SYC_COXBU Cysteine--tRNA ligase OS=Coxiella burnetii (strain RSA 493 / Nine
Mile phase I) GN=cysS PE=1 SV=2
Length = 460
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 99/164 (60%), Gaps = 8/164 (4%)
Query: 308 ESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWG 367
E + VL P + R ++++P I IQ LLD + AY G + V+FDV F Y KL
Sbjct: 99 EDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSH 158
Query: 368 RNENITQHAV-------KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFF 420
R+ + Q KR P DF LWK AKPGEP ++S WG+GRPGWHIECSAM+S
Sbjct: 159 RHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSIL 218
Query: 421 GGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
G D+H GG+DLKFPHHENE AQS A + +V W+H G L
Sbjct: 219 GQPFDIHGGGLDLKFPHHENEIAQSEA-GEEKPFVKLWMHAGLL 261
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+KI+N +TK K F +K Y CG TVYD HIGH + D++ R L +
Sbjct: 3 VKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGY-E 61
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQ 134
+ ++TDIDDKII +A KE +A+R+ +ILH+
Sbjct: 62 VTFVRNITDIDDKIIKRAGENKESPAALAERF-----IQILHE 99
Score = 36.2 bits (82), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLI 203
GH + D++ R L + + ++TDIDDKII +A KE +A+R+
Sbjct: 40 GHGRSWIIFDMVVRYLRMRGY-EVTFVRNITDIDDKIIKRAGENKESPAALAERF----- 93
Query: 204 FKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKV 263
+ILH+ D K +V S + ++ E++ L ++ D + T Q +G V
Sbjct: 94 IQILHE--------DEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQ--NGDV 143
Query: 264 FSD 266
F D
Sbjct: 144 FFD 146
>sp|C1D7F5|SYC_LARHH Cysteine--tRNA ligase OS=Laribacter hongkongensis (strain HLHK9)
GN=cysS PE=3 SV=1
Length = 457
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 100/165 (60%), Gaps = 8/165 (4%)
Query: 308 ESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWG 367
E GV P R ++F+P + S I+ L+ +AY + VY+ V F Y +L G
Sbjct: 98 EDAAALGVQKPNFEPRATQFVPDMISMIEELIGKGRAYAAPNGDVYYAVREFAGYGQLSG 157
Query: 368 RN-------ENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFF 420
++ E + KR P DF LWK+AKPGEP + S WG+GRPGWHIECSAM H+F
Sbjct: 158 KSLDDLRAGERVDVDPNKRDPMDFVLWKAAKPGEPAWPSPWGQGRPGWHIECSAMNEHYF 217
Query: 421 GGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
G D+H GG DL+FPHHENE AQS H+ ++VNYW+H G +R
Sbjct: 218 GPHFDIHGGGADLQFPHHENEIAQSEGAHD-CKFVNYWMHNGFIR 261
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+ +YN +++ K F + Y CG TVYD H+GHA V D++ R L +
Sbjct: 2 LHLYNTLSRQKERFQPIQPGKVNMYVCGMTVYDYCHLGHARVMVVFDMVARWLRASGYDL 61
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
+ V ++TDIDDKII +A E + +R+
Sbjct: 62 TYV-RNITDIDDKIIRRAAENGEPINVLTQRF 92
>sp|A9N924|SYC_COXBR Cysteine--tRNA ligase OS=Coxiella burnetii (strain RSA 331 /
Henzerling II) GN=cysS PE=3 SV=1
Length = 458
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 99/164 (60%), Gaps = 8/164 (4%)
Query: 308 ESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWG 367
E + VL P + R ++++P I IQ LLD + AY G + V+FDV F Y KL
Sbjct: 97 EDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSH 156
Query: 368 RNENITQHAV-------KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFF 420
R+ + Q KR P DF LWK AKPGEP ++S WG+GRPGWHIECSAM+S
Sbjct: 157 RHLDKLQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSIL 216
Query: 421 GGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
G D+H GG+DLKFPHHENE AQS A + +V W+H G L
Sbjct: 217 GQPFDIHGGGLDLKFPHHENEIAQSEA-GEEKPFVKLWMHAGLL 259
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+KI+N +TK K F +K Y CG TVYD HIGH + D++ R L +
Sbjct: 1 MKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGY-E 59
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQ 134
+ ++TDIDDKII +A KE +A+R+ +ILH+
Sbjct: 60 VTFVRNITDIDDKIIKRAGENKESPAALAERF-----IQILHE 97
Score = 35.8 bits (81), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLI 203
GH + D++ R L + + ++TDIDDKII +A KE +A+R+
Sbjct: 38 GHGRSWIIFDMVVRYLRMRGY-EVTFVRNITDIDDKIIKRAGENKESPAALAERF----- 91
Query: 204 FKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKV 263
+ILH+ D K +V S + ++ E++ L ++ D + T Q +G V
Sbjct: 92 IQILHE--------DEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQ--NGDV 141
Query: 264 FSD 266
F D
Sbjct: 142 FFD 144
>sp|A9KBJ2|SYC_COXBN Cysteine--tRNA ligase OS=Coxiella burnetii (strain Dugway
5J108-111) GN=cysS PE=3 SV=1
Length = 458
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 99/164 (60%), Gaps = 8/164 (4%)
Query: 308 ESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWG 367
E + VL P + R ++++P I IQ LLD + AY G + V+FDV F Y KL
Sbjct: 97 EDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSH 156
Query: 368 RNENITQHAV-------KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFF 420
R+ + Q KR P DF LWK AKPGEP ++S WG+GRPGWHIECSAM+S
Sbjct: 157 RHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSIL 216
Query: 421 GGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
G D+H GG+DLKFPHHENE AQS A + +V W+H G L
Sbjct: 217 GQPFDIHGGGLDLKFPHHENEIAQSEA-GEEKPFVKLWMHAGLL 259
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+KI+N +TK K F +K Y CG TVYD HIGH + D++ R L +
Sbjct: 1 MKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGY-E 59
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQ 134
+ ++TDIDDKII +A KE +A+R+ +ILH+
Sbjct: 60 VTFVRNITDIDDKIIKRAGENKESPAALAERF-----IQILHE 97
Score = 35.8 bits (81), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLI 203
GH + D++ R L + + ++TDIDDKII +A KE +A+R+
Sbjct: 38 GHGRSWIIFDMVVRYLRMRGY-EVTFVRNITDIDDKIIKRAGENKESPAALAERF----- 91
Query: 204 FKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKV 263
+ILH+ D K +V S + ++ E++ L ++ D + T Q +G V
Sbjct: 92 IQILHE--------DEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQ--NGDV 141
Query: 264 FSD 266
F D
Sbjct: 142 FFD 144
>sp|Q7NX82|SYC_CHRVO Cysteine--tRNA ligase OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=cysS PE=3 SV=2
Length = 457
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 113/201 (56%), Gaps = 15/201 (7%)
Query: 278 LIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQT 337
+I+ +L +T +V E + + R + G+LPPT R + + + + I+
Sbjct: 74 IIKRALERGITPEQLVEETIADMR------QDAAALGLLPPTHEPRATHHVGGMVAMIEQ 127
Query: 338 LLDTKQAYIGSDHSVYFDVDSFPHYFKLWGR-------NENITQHAVKRSPFDFALWKSA 390
L+ +AY ++ VY+ V F Y KL GR E + KR P DF LWK+A
Sbjct: 128 LIANGKAYPAANGDVYYAVREFEGYGKLSGRTLDKLRAGERVEVDPNKRDPLDFVLWKAA 187
Query: 391 KPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHN 450
KPGEP ++S WGKGRPGWHIECS M+ H G D+H GG DL+FPHHENE AQS H
Sbjct: 188 KPGEPSWDSPWGKGRPGWHIECSVMSCHHLGEHFDIHGGGEDLQFPHHENEIAQSEGAHG 247
Query: 451 QSQWVNYWLHTGHLRGTDGTR 471
Q+VNYWLH G + DG +
Sbjct: 248 H-QYVNYWLHNGFIN-VDGEK 266
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+ +YN +T+ K F + Y CG TVYD HIGHA D+I R L+ +
Sbjct: 2 LSLYNTLTRQKEAFKPIEPGKVSMYVCGMTVYDLCHIGHARMLAAFDVIYRWLKASGYDV 61
Query: 92 SIVISSVTDIDDKIINKA 109
+ V ++TDI+DKII +A
Sbjct: 62 NYV-RNITDIEDKIIKRA 78
>sp|A5G949|SYC_GEOUR Cysteine--tRNA ligase OS=Geobacter uraniireducens (strain Rf4)
GN=cysS PE=3 SV=1
Length = 494
Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 102/170 (60%), Gaps = 11/170 (6%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAY-IGSDHSVYFDVDSF 359
R+ E+ M + G+L PT + +E IP I + +QTL+D AY +G D V F V+ F
Sbjct: 92 RFIKEFDRDMAQLGLLLPTSQPKATEHIPEIITLVQTLIDKGFAYQMGGD--VNFCVEKF 149
Query: 360 PHYFKLWGRNENITQHAV-------KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIEC 412
Y KL RN Q KR P DF LWK AKPGEP++ES WGKGRPGWHIEC
Sbjct: 150 DPYLKLSKRNLEDMQAGARIEVDERKRHPMDFVLWKEAKPGEPFWESPWGKGRPGWHIEC 209
Query: 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTG 462
SAM+ + G D+H GG DL FPHHENE AQS A + +V YWLH G
Sbjct: 210 SAMSMKYLGETFDIHGGGKDLVFPHHENEIAQSEAASGKP-FVKYWLHNG 258
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 31 GIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHI 90
+++YN +T TK F+ +K Y CG TVYD HIGHA NV D+I R L +
Sbjct: 2 ALRVYNTLTGTKEDFVPIEPGKVKMYVCGVTVYDHCHIGHARANVVFDVIYRYLRS-LGL 60
Query: 91 HSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
+ + TDIDDKIIN+AN Y +++R+
Sbjct: 61 EVNYVRNYTDIDDKIINRANREGVAYDAISERF 93
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GHA NV D+I R L + + + TDIDDKIIN+AN Y +++R+
Sbjct: 40 GHARANVVFDVIYRYLRS-LGLEVNYVRNYTDIDDKIINRANREGVAYDAISERF 93
>sp|Q6FC71|SYC_ACIAD Cysteine--tRNA ligase OS=Acinetobacter sp. (strain ADP1) GN=cysS
PE=3 SV=1
Length = 473
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 101/173 (58%), Gaps = 11/173 (6%)
Query: 308 ESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWG 367
E K G P A + +E+I +Q+ I TL+D AY S+ VYF+V F Y +L G
Sbjct: 100 EDAAKLGCAEPDEAPKATEYIGEMQNMISTLVDKGSAYPASNGDVYFEVSKFEKYGRLSG 159
Query: 368 R---------NENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASH 418
R +E + K+ PFDF LWK AKP EP + S WG GRPGWHIECSAM++
Sbjct: 160 RKLEDMQAGASERVDIEVEKKHPFDFVLWKGAKPNEPSWVSPWGNGRPGWHIECSAMSTC 219
Query: 419 FFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTR 471
G D+H GG DL FPHHENE AQS A + Q+VNYW+H G + DG +
Sbjct: 220 CLGNHFDIHGGGSDLTFPHHENEIAQSEASTGE-QYVNYWMHVGFI-NVDGEK 270
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 34 IYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLD-IIRRILEHYFHIHS 92
+YN + KV F+ + H+ Y CG TVYD HIGHA V D IIR + + +
Sbjct: 6 LYNSEQRKKVEFVPRKPGHIDMYVCGMTVYDYCHIGHARVMVAFDYIIRFLRSQGWDVR- 64
Query: 93 IVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
I ++TDIDDKII +AN E + + R+
Sbjct: 65 -YIRNITDIDDKIIKRANENNETIQQLTSRF 94
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 144 GHAVCNVKLD-IIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GHA V D IIR + + + I ++TDIDDKII +AN E + + R+
Sbjct: 41 GHARVMVAFDYIIRFLRSQGWDVR--YIRNITDIDDKIIKRANENNETIQQLTSRF 94
>sp|A1AK01|SYC_PELPD Cysteine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379)
GN=cysS PE=3 SV=1
Length = 493
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 106/169 (62%), Gaps = 9/169 (5%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
RY + + M + G+ PT + ++ + I S I+TL+ AY SD VY+ V+SFP
Sbjct: 92 RYIEAFNQDMARLGLAKPTVEPKATDHMGGIISVIETLIAKGHAY-ESDGDVYYAVESFP 150
Query: 361 HYFKLWGRN-ENITQHAV------KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413
Y +L GRN E++ A KR+P DFALWK +KPGEP ++S WG GRPGWHIECS
Sbjct: 151 SYLRLSGRNLEDMLAGARVEVDDRKRNPMDFALWKGSKPGEPSWDSPWGAGRPGWHIECS 210
Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTG 462
AM+ + G D+H GG DL FPHHENE AQS A N Q+V YW+H G
Sbjct: 211 AMSMEYLGKTFDIHGGGKDLVFPHHENEIAQSEA-ANGCQFVRYWMHNG 258
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
++IYN +T K F+ + Y CG TVYD HIGHA NV D+I R L Y
Sbjct: 3 LRIYNTLTGEKDTFVPLHPGKAGMYVCGVTVYDYCHIGHARANVVFDVIYRYL-GYSGYA 61
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
+ + TDIDDKIIN+AN DY T+++RY
Sbjct: 62 VTYVRNFTDIDDKIINRANQEGVDYTTISERY 93
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GHA NV D+I R L Y + + TDIDDKIIN+AN DY T+++RY
Sbjct: 40 GHARANVVFDVIYRYL-GYSGYAVTYVRNFTDIDDKIINRANQEGVDYTTISERY 93
>sp|B3GXR0|SYC_ACTP7 Cysteine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype 7
(strain AP76) GN=cysS PE=3 SV=1
Length = 459
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 101/183 (55%), Gaps = 8/183 (4%)
Query: 305 EYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFK 364
E + + +L P R ++ IP I + ++ L+ AY+ +D V FDV+SF Y
Sbjct: 95 EMHKDFDDLNILRPDVEPRATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGA 154
Query: 365 LWGRNENITQ-------HAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMAS 417
L +N Q +VK++P DF LWK +K GEP ++S WG GRPGWHIECSAM S
Sbjct: 155 LSRQNLEQLQAGARVEIKSVKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNS 214
Query: 418 HFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAAR 477
G D+H GG DL FPHHENE AQSC H +VNYWLHTG L D
Sbjct: 215 KELGEHFDIHGGGSDLMFPHHENEIAQSCCAHG-GDYVNYWLHTGMLTIDDEKMSKSLGN 273
Query: 478 FIT 480
F T
Sbjct: 274 FFT 276
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+KIYN + + K F N N + Y CG TVYD H GH V D+I R L Y +
Sbjct: 2 LKIYNTLKREKEEFKPINSNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYL-RYLGYN 60
Query: 92 SIVISSVTDIDDKIINKA 109
+ ++TD+DDKII +A
Sbjct: 61 LRYVRNITDVDDKIIKRA 78
>sp|A3N0S3|SYC_ACTP2 Cysteine--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype
5b (strain L20) GN=cysS PE=3 SV=1
Length = 459
Score = 159 bits (402), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 101/183 (55%), Gaps = 8/183 (4%)
Query: 305 EYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFK 364
E + + +L P R ++ IP I + ++ L+ AY+ +D V FDV+SF Y
Sbjct: 95 EMHKDFDDLNILRPDVEPRATKHIPEIVAMVEKLIANGHAYVAADGDVMFDVESFKKYGA 154
Query: 365 LWGRNENITQ-------HAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMAS 417
L +N Q +VK++P DF LWK +K GEP ++S WG GRPGWHIECSAM S
Sbjct: 155 LSRQNLEQLQAGARVEIKSVKKNPMDFVLWKMSKEGEPSWQSPWGNGRPGWHIECSAMNS 214
Query: 418 HFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAAR 477
G D+H GG DL FPHHENE AQSC H +VNYWLHTG L D
Sbjct: 215 KELGEHFDIHGGGSDLMFPHHENEIAQSCCAHG-GDYVNYWLHTGMLTIDDEKMSKSLGN 273
Query: 478 FIT 480
F T
Sbjct: 274 FFT 276
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+KIYN + + K F N N + Y CG TVYD H GH V D+I R L Y +
Sbjct: 2 LKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTFVSFDVIARYL-RYLGYN 60
Query: 92 SIVISSVTDIDDKIINKA 109
+ ++TD+DDKII +A
Sbjct: 61 LRYVRNITDVDDKIIKRA 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,533,247
Number of Sequences: 539616
Number of extensions: 8619540
Number of successful extensions: 23810
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 18642
Number of HSP's gapped (non-prelim): 2893
length of query: 515
length of database: 191,569,459
effective HSP length: 122
effective length of query: 393
effective length of database: 125,736,307
effective search space: 49414368651
effective search space used: 49414368651
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)