Query psy13464
Match_columns 515
No_of_seqs 208 out of 1432
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 20:05:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2007|consensus 100.0 2E-113 4E-118 898.7 21.8 308 12-495 14-329 (586)
2 COG0215 CysS Cysteinyl-tRNA sy 100.0 5E-113 1E-117 900.5 21.9 283 31-494 1-291 (464)
3 PLN02946 cysteine-tRNA ligase 100.0 2E-104 4E-109 856.6 25.7 290 24-496 52-348 (557)
4 PF01406 tRNA-synt_1e: tRNA sy 100.0 3E-105 6E-110 806.7 15.5 269 45-495 1-276 (300)
5 PTZ00399 cysteinyl-tRNA-synthe 100.0 4E-104 8E-109 870.1 25.7 305 11-496 16-340 (651)
6 PRK14535 cysS cysteinyl-tRNA s 100.0 3E-102 6E-107 848.2 24.6 285 30-495 226-532 (699)
7 TIGR03447 mycothiol_MshC cyste 100.0 2E-101 4E-106 809.1 24.1 294 20-496 6-314 (411)
8 PRK14536 cysS cysteinyl-tRNA s 100.0 1.4E-99 3E-104 809.8 23.4 283 31-495 2-304 (490)
9 PRK14534 cysS cysteinyl-tRNA s 100.0 3E-97 7E-102 789.8 23.6 282 30-495 1-304 (481)
10 PRK12418 cysteinyl-tRNA synthe 100.0 2.9E-95 6E-100 757.5 22.2 269 46-495 2-286 (384)
11 PRK00260 cysS cysteinyl-tRNA s 100.0 3.9E-93 8.4E-98 756.8 24.5 284 30-496 1-291 (463)
12 TIGR00435 cysS cysteinyl-tRNA 100.0 8.5E-93 1.8E-97 755.0 23.8 282 32-496 1-290 (465)
13 cd00672 CysRS_core catalytic c 100.0 3.2E-62 6.9E-67 474.0 15.1 199 33-496 1-199 (213)
14 cd00668 Ile_Leu_Val_MetRS_core 100.0 5.7E-46 1.2E-50 375.2 13.3 181 302-495 84-297 (312)
15 PRK11893 methionyl-tRNA synthe 100.0 2.9E-44 6.2E-49 382.8 16.8 254 53-496 3-324 (511)
16 cd00814 MetRS_core catalytic c 100.0 1.1E-39 2.4E-44 331.3 14.7 253 57-496 6-305 (319)
17 cd00812 LeuRS_core catalytic c 100.0 2.3E-35 4.9E-40 299.7 9.7 247 60-496 9-300 (314)
18 TIGR00398 metG methionyl-tRNA 100.0 1.3E-30 2.9E-35 280.5 18.1 254 57-496 5-352 (530)
19 PLN02224 methionine-tRNA ligas 100.0 3.6E-30 7.9E-35 283.0 19.5 245 60-495 78-390 (616)
20 cd00817 ValRS_core catalytic c 100.0 8.7E-31 1.9E-35 273.0 12.1 191 301-495 87-367 (382)
21 PRK12268 methionyl-tRNA synthe 100.0 2.7E-30 5.9E-35 279.6 14.5 250 54-496 4-359 (556)
22 PRK01611 argS arginyl-tRNA syn 100.0 3.3E-30 7.1E-35 277.4 13.3 228 49-491 109-343 (507)
23 PRK00133 metG methionyl-tRNA s 100.0 1.3E-29 2.9E-34 281.0 18.1 242 60-496 11-354 (673)
24 PRK12267 methionyl-tRNA synthe 100.0 1.7E-29 3.7E-34 278.7 18.7 254 54-496 5-324 (648)
25 cd00818 IleRS_core catalytic c 100.0 2.8E-30 6.2E-35 265.2 9.2 191 301-496 88-324 (338)
26 COG0143 MetG Methionyl-tRNA sy 100.0 4.7E-28 1E-32 263.1 19.6 246 60-495 14-357 (558)
27 cd00671 ArgRS_core catalytic c 99.9 4.3E-27 9.3E-32 226.9 16.8 139 302-476 70-212 (212)
28 PF09334 tRNA-synt_1g: tRNA sy 99.9 1.7E-26 3.7E-31 242.1 8.8 248 60-495 8-351 (391)
29 PLN02610 probable methionyl-tR 99.9 2E-24 4.4E-29 243.8 16.4 259 54-495 18-373 (801)
30 cd00802 class_I_aaRS_core cata 99.9 5.4E-24 1.2E-28 192.5 11.1 65 408-475 78-143 (143)
31 KOG0436|consensus 99.9 1.3E-22 2.8E-27 211.5 14.7 256 54-495 40-368 (578)
32 PRK13208 valS valyl-tRNA synth 99.9 5E-22 1.1E-26 224.4 15.6 72 423-496 486-558 (800)
33 PRK04156 gltX glutamyl-tRNA sy 99.9 3.9E-22 8.4E-27 217.4 10.4 177 302-495 154-378 (567)
34 TIGR00395 leuS_arch leucyl-tRN 99.9 3.7E-21 7.9E-26 220.8 15.7 72 423-495 573-644 (938)
35 TIGR00456 argS arginyl-tRNA sy 99.8 4.1E-20 8.8E-25 202.1 17.7 154 301-496 236-420 (566)
36 TIGR00422 valS valyl-tRNA synt 99.8 2.5E-20 5.3E-25 212.2 13.6 71 423-495 478-549 (861)
37 PRK05729 valS valyl-tRNA synth 99.8 2.7E-20 5.9E-25 212.3 12.3 71 423-495 473-544 (874)
38 cd00674 LysRS_core_class_I cat 99.7 5.6E-18 1.2E-22 176.2 11.7 178 302-496 106-300 (353)
39 PRK05743 ileS isoleucyl-tRNA s 99.7 1.5E-17 3.3E-22 190.7 14.5 72 422-495 544-616 (912)
40 PRK12451 arginyl-tRNA syntheta 99.7 2E-16 4.3E-21 173.2 18.7 147 302-487 236-388 (562)
41 PRK12300 leuS leucyl-tRNA synt 99.7 5.7E-17 1.2E-21 185.8 13.5 72 423-495 530-601 (897)
42 PRK00750 lysK lysyl-tRNA synth 99.7 3.4E-16 7.4E-21 169.8 17.0 88 402-495 216-304 (510)
43 PRK14900 valS valyl-tRNA synth 99.7 8.6E-17 1.9E-21 186.9 13.0 71 423-495 491-562 (1052)
44 TIGR00392 ileS isoleucyl-tRNA 99.7 1.2E-16 2.7E-21 182.1 14.0 72 423-496 564-636 (861)
45 cd09287 GluRS_non_core catalyt 99.7 7.2E-17 1.6E-21 160.2 10.2 138 302-495 54-206 (240)
46 COG0018 ArgS Arginyl-tRNA synt 99.7 1.4E-15 3.1E-20 166.9 19.4 270 51-487 117-400 (577)
47 PLN02843 isoleucyl-tRNA synthe 99.7 7.4E-16 1.6E-20 178.0 17.2 73 422-495 563-644 (974)
48 PLN02943 aminoacyl-tRNA ligase 99.7 3.9E-16 8.6E-21 180.0 14.6 68 423-495 536-607 (958)
49 PRK06039 ileS isoleucyl-tRNA s 99.7 5.1E-16 1.1E-20 179.3 15.2 71 423-495 545-616 (975)
50 PRK13804 ileS isoleucyl-tRNA s 99.6 7.5E-16 1.6E-20 177.7 13.8 71 421-495 581-654 (961)
51 PLN02286 arginine-tRNA ligase 99.6 1E-14 2.2E-19 160.3 17.3 149 300-487 239-395 (576)
52 PF00750 tRNA-synt_1d: tRNA sy 99.6 5.5E-15 1.2E-19 153.5 13.4 148 302-487 147-305 (354)
53 PTZ00419 valyl-tRNA synthetase 99.6 3.7E-15 8E-20 172.6 12.6 52 54-106 63-114 (995)
54 PF00133 tRNA-synt_1: tRNA syn 99.6 4.7E-15 1E-19 163.5 12.1 72 422-495 513-585 (601)
55 PLN02882 aminoacyl-tRNA ligase 99.6 1E-14 2.2E-19 170.9 14.6 71 423-495 567-638 (1159)
56 PLN02381 valyl-tRNA synthetase 99.6 1.9E-14 4E-19 167.7 13.9 56 54-110 131-186 (1066)
57 TIGR00467 lysS_arch lysyl-tRNA 99.5 1.4E-13 3.1E-18 149.7 14.5 48 54-102 20-67 (515)
58 KOG2007|consensus 99.4 1.7E-13 3.7E-18 146.3 2.6 45 141-185 69-113 (586)
59 PRK00390 leuS leucyl-tRNA synt 99.4 3.1E-12 6.7E-17 145.7 12.9 58 54-112 33-92 (805)
60 TIGR00396 leuS_bact leucyl-tRN 99.3 1.2E-11 2.7E-16 141.4 13.7 60 52-112 28-89 (842)
61 COG0525 ValS Valyl-tRNA synthe 99.3 2.8E-11 6E-16 137.5 14.8 96 395-495 451-549 (877)
62 PLN02959 aminoacyl-tRNA ligase 99.1 3.4E-11 7.4E-16 141.0 3.3 74 422-496 670-743 (1084)
63 PLN02563 aminoacyl-tRNA ligase 99.1 4.9E-10 1.1E-14 129.9 11.9 61 51-112 108-171 (963)
64 PTZ00399 cysteinyl-tRNA-synthe 98.9 4.9E-10 1.1E-14 125.3 3.3 44 140-183 73-116 (651)
65 TIGR00463 gltX_arch glutamyl-t 98.9 5.9E-09 1.3E-13 114.7 9.4 178 302-494 144-368 (560)
66 PF01921 tRNA-synt_1f: tRNA sy 98.8 4.4E-09 9.5E-14 110.2 7.2 84 403-492 217-303 (360)
67 KOG0437|consensus 98.8 7.7E-10 1.7E-14 122.7 1.5 82 422-504 662-748 (1080)
68 PF01406 tRNA-synt_1e: tRNA sy 98.8 1.2E-09 2.7E-14 111.8 1.4 44 139-183 20-63 (300)
69 COG0495 LeuS Leucyl-tRNA synth 98.8 4.4E-08 9.5E-13 111.7 11.9 74 422-496 525-604 (814)
70 COG0215 CysS Cysteinyl-tRNA sy 98.7 3.8E-09 8.3E-14 113.5 2.8 43 140-183 35-77 (464)
71 PTZ00427 isoleucine-tRNA ligas 98.7 9.4E-08 2E-12 113.3 11.9 59 53-112 104-162 (1205)
72 TIGR00464 gltX_bact glutamyl-t 98.6 2.2E-07 4.7E-12 100.8 12.4 161 302-492 52-262 (470)
73 COG0495 LeuS Leucyl-tRNA synth 98.6 8.5E-09 1.8E-13 117.4 0.7 58 54-112 35-94 (814)
74 COG1384 LysS Lysyl-tRNA synthe 98.6 9.9E-07 2.1E-11 95.8 15.8 88 402-495 211-301 (521)
75 PLN03233 putative glutamate-tR 98.6 2.9E-07 6.3E-12 100.8 11.7 178 302-494 62-285 (523)
76 PRK12558 glutamyl-tRNA synthet 98.6 1.9E-07 4.2E-12 100.6 9.5 162 302-494 53-263 (445)
77 cd00808 GluRS_core catalytic c 98.5 4.2E-07 9E-12 90.9 9.7 124 302-494 52-185 (239)
78 PRK01406 gltX glutamyl-tRNA sy 98.5 2.1E-06 4.6E-11 93.3 14.1 162 302-492 55-272 (476)
79 PLN02959 aminoacyl-tRNA ligase 98.4 1.8E-06 3.9E-11 102.0 13.9 60 53-113 45-106 (1084)
80 PTZ00427 isoleucine-tRNA ligas 98.4 1E-07 2.2E-12 113.1 3.5 73 422-496 672-745 (1205)
81 cd00418 GlxRS_core catalytic c 98.4 1.3E-06 2.7E-11 87.1 10.5 123 302-494 52-176 (230)
82 PLN02907 glutamate-tRNA ligase 98.4 2.4E-06 5.2E-11 97.1 14.1 157 302-475 264-453 (722)
83 PRK14895 gltX glutamyl-tRNA sy 98.4 4.1E-06 8.9E-11 91.8 14.4 170 302-493 55-262 (513)
84 PRK05347 glutaminyl-tRNA synth 98.4 1.4E-06 3.1E-11 95.9 10.9 176 302-495 80-310 (554)
85 PLN02946 cysteine-tRNA ligase 98.4 1.7E-07 3.8E-12 103.3 3.2 43 140-183 93-135 (557)
86 cd00807 GlnRS_core catalytic c 98.3 3.6E-06 7.7E-11 84.3 10.5 138 302-495 52-204 (238)
87 PRK14536 cysS cysteinyl-tRNA s 98.3 3.4E-07 7.3E-12 99.8 2.8 44 139-183 35-88 (490)
88 TIGR03447 mycothiol_MshC cyste 98.2 5.3E-07 1.1E-11 96.4 3.1 43 140-183 49-91 (411)
89 TIGR00440 glnS glutaminyl-tRNA 98.2 4.6E-06 9.9E-11 91.6 9.9 45 302-346 51-95 (522)
90 PRK12418 cysteinyl-tRNA synthe 98.2 6.2E-07 1.3E-11 95.1 2.9 44 139-183 21-64 (384)
91 PRK12410 glutamylglutaminyl-tR 98.2 7.1E-06 1.5E-10 88.4 10.4 166 302-494 50-258 (433)
92 PRK14534 cysS cysteinyl-tRNA s 98.2 1E-06 2.2E-11 95.8 3.0 44 139-183 33-86 (481)
93 PRK14535 cysS cysteinyl-tRNA s 98.2 1.1E-06 2.4E-11 98.6 3.3 44 139-183 260-303 (699)
94 KOG0435|consensus 98.1 3.2E-06 7E-11 94.0 6.4 70 41-112 45-117 (876)
95 PTZ00402 glutamyl-tRNA synthet 98.1 4.5E-05 9.7E-10 85.0 15.3 44 302-346 103-147 (601)
96 PF00749 tRNA-synt_1c: tRNA sy 98.1 1.1E-05 2.3E-10 83.4 9.2 167 302-493 52-267 (314)
97 PRK14703 glutaminyl-tRNA synth 98.1 2.8E-05 6.2E-10 88.9 13.4 45 302-346 82-126 (771)
98 COG0060 IleS Isoleucyl-tRNA sy 98.1 7.8E-06 1.7E-10 94.7 8.8 52 60-112 58-109 (933)
99 TIGR00396 leuS_bact leucyl-tRN 98.1 5.1E-07 1.1E-11 104.0 -0.9 58 138-197 42-99 (842)
100 TIGR00435 cysS cysteinyl-tRNA 98.1 1.8E-06 3.9E-11 93.5 2.8 43 140-183 34-76 (465)
101 COG0008 GlnS Glutamyl- and glu 98.0 4.1E-05 9E-10 83.4 12.1 44 302-346 60-104 (472)
102 PRK00260 cysS cysteinyl-tRNA s 98.0 3.5E-06 7.5E-11 91.1 3.4 44 139-183 35-78 (463)
103 PTZ00437 glutaminyl-tRNA synth 98.0 2.5E-05 5.3E-10 86.6 9.6 172 302-494 102-325 (574)
104 PLN02563 aminoacyl-tRNA ligase 98.0 1.3E-06 2.7E-11 102.1 -0.8 57 137-194 122-178 (963)
105 PLN02859 glutamine-tRNA ligase 97.9 2.6E-05 5.7E-10 89.0 8.3 44 302-346 315-358 (788)
106 PLN02627 glutamyl-tRNA synthet 97.8 0.00013 2.9E-09 80.5 12.2 44 302-346 96-148 (535)
107 PRK05710 glutamyl-Q tRNA(Asp) 97.8 7.8E-05 1.7E-09 77.0 8.1 44 302-346 56-100 (299)
108 cd00672 CysRS_core catalytic c 97.7 1.5E-05 3.3E-10 78.2 2.7 43 140-183 33-75 (213)
109 PRK00390 leuS leucyl-tRNA synt 97.7 5.4E-06 1.2E-10 95.2 -0.5 59 139-198 45-103 (805)
110 KOG1195|consensus 97.6 0.00019 4E-09 78.3 9.2 261 51-487 110-384 (567)
111 COG0060 IleS Isoleucyl-tRNA sy 97.6 2E-05 4.3E-10 91.5 0.8 69 425-495 557-626 (933)
112 TIGR03838 queuosine_YadB gluta 97.4 0.00038 8.2E-09 71.1 7.3 44 302-346 51-95 (272)
113 KOG1247|consensus 97.3 0.00052 1.1E-08 73.6 7.5 55 57-112 20-75 (567)
114 cd00671 ArgRS_core catalytic c 97.2 0.00025 5.4E-09 69.0 3.3 49 138-187 12-60 (212)
115 KOG0433|consensus 97.1 0.0023 4.9E-08 72.7 10.4 72 32-106 27-109 (937)
116 PRK11893 methionyl-tRNA synthe 96.8 0.00079 1.7E-08 72.9 3.3 43 139-182 14-56 (511)
117 cd00814 MetRS_core catalytic c 96.8 0.00077 1.7E-08 69.4 2.9 44 139-183 13-56 (319)
118 TIGR00398 metG methionyl-tRNA 96.6 0.0014 3.1E-08 71.6 3.2 44 139-183 12-55 (530)
119 cd00668 Ile_Leu_Val_MetRS_core 96.5 0.0015 3.1E-08 66.9 2.8 49 139-188 13-61 (312)
120 KOG0432|consensus 96.5 0.00083 1.8E-08 77.1 0.6 83 396-486 520-609 (995)
121 cd00812 LeuRS_core catalytic c 96.4 0.0026 5.7E-08 65.5 3.4 43 139-182 13-55 (314)
122 cd00818 IleRS_core catalytic c 96.3 0.0022 4.8E-08 66.8 2.8 45 139-184 14-62 (338)
123 KOG1147|consensus 96.3 0.0055 1.2E-07 67.7 5.8 45 301-346 250-294 (712)
124 KOG0432|consensus 96.2 0.021 4.5E-07 66.2 9.6 49 50-99 74-122 (995)
125 KOG0433|consensus 96.1 0.0043 9.3E-08 70.5 3.7 72 424-495 567-643 (937)
126 PRK12268 methionyl-tRNA synthe 96.0 0.0046 1E-07 68.1 3.3 44 139-183 16-60 (556)
127 cd00802 class_I_aaRS_core cata 96.0 0.0038 8.1E-08 56.7 2.0 55 140-195 11-65 (143)
128 PRK12267 methionyl-tRNA synthe 95.6 0.0086 1.9E-07 67.5 3.5 43 139-182 17-59 (648)
129 KOG0434|consensus 95.6 0.0056 1.2E-07 69.2 1.8 51 443-495 574-625 (1070)
130 COG0525 ValS Valyl-tRNA synthe 95.5 0.042 9.1E-07 64.1 8.3 49 298-346 116-167 (877)
131 PLN02224 methionine-tRNA ligas 95.3 0.012 2.6E-07 66.4 3.3 44 138-182 81-124 (616)
132 KOG4426|consensus 94.5 0.26 5.6E-06 53.9 10.4 62 53-115 190-251 (656)
133 PRK00133 metG methionyl-tRNA s 94.2 0.032 7E-07 63.4 3.2 44 138-182 14-57 (673)
134 KOG0435|consensus 93.0 0.021 4.5E-07 64.7 -1.1 28 468-496 615-642 (876)
135 PRK01611 argS arginyl-tRNA syn 92.8 0.071 1.5E-06 58.6 2.8 42 140-182 125-166 (507)
136 cd00817 ValRS_core catalytic c 90.9 0.14 3E-06 54.4 2.4 45 139-184 14-58 (382)
137 cd00805 TyrRS_core catalytic c 89.9 0.16 3.4E-06 51.6 1.7 51 425-479 153-204 (269)
138 PRK05912 tyrosyl-tRNA syntheta 89.4 0.16 3.5E-06 54.8 1.2 56 422-483 187-245 (408)
139 PRK13354 tyrosyl-tRNA syntheta 88.1 0.3 6.6E-06 52.8 2.3 58 423-484 186-244 (410)
140 TIGR00233 trpS tryptophanyl-tR 87.4 0.33 7.2E-06 50.9 2.0 66 413-480 129-203 (328)
141 PRK12284 tryptophanyl-tRNA syn 87.2 0.48 1E-05 51.8 3.2 67 413-480 138-212 (431)
142 cd00674 LysRS_core_class_I cat 84.9 0.54 1.2E-05 50.0 2.2 40 138-178 30-69 (353)
143 PF00579 tRNA-synt_1b: tRNA sy 84.5 0.53 1.2E-05 47.9 1.8 69 413-483 139-212 (292)
144 cd00395 Tyr_Trp_RS_core cataly 84.2 0.64 1.4E-05 47.6 2.2 55 423-479 153-207 (273)
145 PRK08560 tyrosyl-tRNA syntheta 83.3 0.73 1.6E-05 48.3 2.3 67 413-483 158-228 (329)
146 cd09287 GluRS_non_core catalyt 82.9 0.38 8.2E-06 48.7 -0.0 35 140-180 13-47 (240)
147 PTZ00126 tyrosyl-tRNA syntheta 82.5 1.1 2.4E-05 48.2 3.3 66 414-483 201-271 (383)
148 PRK12556 tryptophanyl-tRNA syn 82.0 0.91 2E-05 47.9 2.4 67 413-480 139-212 (332)
149 cd00806 TrpRS_core catalytic c 81.8 1.1 2.4E-05 45.9 2.9 70 413-483 127-205 (280)
150 COG0180 TrpS Tryptophanyl-tRNA 80.5 1.3 2.8E-05 46.7 2.8 68 413-481 135-210 (314)
151 COG0162 TyrS Tyrosyl-tRNA synt 78.4 1.1 2.3E-05 48.7 1.5 55 425-483 182-239 (401)
152 PRK00927 tryptophanyl-tRNA syn 73.7 2.2 4.8E-05 44.9 2.4 68 413-481 128-207 (333)
153 PRK12282 tryptophanyl-tRNA syn 73.3 2 4.4E-05 45.3 1.9 63 414-481 133-207 (333)
154 PRK12285 tryptophanyl-tRNA syn 73.3 1.8 3.9E-05 46.4 1.6 56 422-480 202-262 (368)
155 TIGR00456 argS arginyl-tRNA sy 72.8 2.1 4.5E-05 48.1 2.0 29 139-168 125-153 (566)
156 PRK00750 lysK lysyl-tRNA synth 70.5 2.2 4.8E-05 47.4 1.6 35 138-173 34-68 (510)
157 KOG0437|consensus 68.2 7.1 0.00015 45.7 4.9 58 54-112 45-104 (1080)
158 PF09334 tRNA-synt_1g: tRNA sy 68.0 2.3 5.1E-05 45.6 1.1 33 139-172 12-44 (391)
159 COG0143 MetG Methionyl-tRNA sy 67.5 3.5 7.5E-05 46.6 2.3 36 137-173 16-51 (558)
160 PRK13208 valS valyl-tRNA synth 65.7 4 8.7E-05 47.6 2.4 59 298-358 118-180 (800)
161 PRK05729 valS valyl-tRNA synth 64.1 4.8 0.0001 47.5 2.7 57 299-358 120-181 (874)
162 TIGR00392 ileS isoleucyl-tRNA 63.1 4.5 9.7E-05 47.6 2.2 60 298-358 120-182 (861)
163 PTZ00348 tyrosyl-tRNA syntheta 62.8 5.8 0.00013 45.9 3.0 66 414-482 166-235 (682)
164 TIGR00234 tyrS tyrosyl-tRNA sy 62.6 5.4 0.00012 42.8 2.5 58 423-484 177-235 (377)
165 PRK12283 tryptophanyl-tRNA syn 59.6 4.5 9.8E-05 44.0 1.3 19 465-483 259-277 (398)
166 PLN02381 valyl-tRNA synthetase 57.6 5.4 0.00012 48.3 1.7 64 422-486 607-671 (1066)
167 PRK12300 leuS leucyl-tRNA synt 55.6 6.4 0.00014 46.7 1.8 59 298-358 77-139 (897)
168 PLN02486 aminoacyl-tRNA ligase 55.1 36 0.00079 36.9 7.2 44 50-100 71-115 (383)
169 KOG1148|consensus 54.0 21 0.00046 40.9 5.3 46 300-346 297-342 (764)
170 PTZ00419 valyl-tRNA synthetase 53.1 7.3 0.00016 46.7 1.8 63 423-486 538-601 (995)
171 PF01927 Mut7-C: Mut7-C RNAse 52.5 16 0.00034 34.0 3.5 29 80-111 12-40 (147)
172 KOG0434|consensus 52.1 92 0.002 36.8 9.9 53 52-105 39-91 (1070)
173 PLN02610 probable methionyl-tR 50.3 13 0.00028 43.9 3.1 17 240-258 473-489 (801)
174 TIGR00395 leuS_arch leucyl-tRN 50.1 9.9 0.00022 45.4 2.2 59 298-358 116-178 (938)
175 PRK04156 gltX glutamyl-tRNA sy 50.0 5.4 0.00012 45.2 0.0 35 140-180 113-147 (567)
176 PRK14900 valS valyl-tRNA synth 49.9 8.2 0.00018 46.7 1.5 59 298-358 132-194 (1052)
177 PRK05743 ileS isoleucyl-tRNA s 48.0 12 0.00027 44.5 2.6 60 298-358 129-191 (912)
178 PRK13804 ileS isoleucyl-tRNA s 47.8 8.8 0.00019 46.0 1.3 60 298-358 137-199 (961)
179 TIGR00422 valS valyl-tRNA synt 47.1 11 0.00023 44.5 1.8 58 298-358 116-178 (861)
180 PLN02886 aminoacyl-tRNA ligase 43.9 20 0.00044 39.0 3.2 34 413-447 174-207 (389)
181 KOG3846|consensus 43.4 64 0.0014 34.8 6.6 125 265-391 130-276 (465)
182 PLN02943 aminoacyl-tRNA ligase 42.9 12 0.00026 44.9 1.4 34 139-173 101-134 (958)
183 PLN02882 aminoacyl-tRNA ligase 42.6 11 0.00024 46.1 1.1 60 298-358 122-184 (1159)
184 KOG1149|consensus 42.6 39 0.00084 37.7 5.0 63 289-358 51-142 (524)
185 PLN02843 isoleucyl-tRNA synthe 42.3 14 0.0003 44.5 1.8 60 298-358 113-175 (974)
186 PRK06039 ileS isoleucyl-tRNA s 41.9 14 0.00031 44.3 1.8 33 140-173 55-87 (975)
187 PF00133 tRNA-synt_1: tRNA syn 40.6 8.4 0.00018 43.6 -0.3 60 298-358 107-169 (601)
188 cd00395 Tyr_Trp_RS_core cataly 38.6 61 0.0013 33.2 5.6 35 58-97 4-39 (273)
189 COG0018 ArgS Arginyl-tRNA synt 37.6 19 0.0004 41.1 1.8 30 140-170 131-160 (577)
190 COG1656 Uncharacterized conser 35.5 40 0.00087 32.7 3.4 30 79-111 17-46 (165)
191 PRK12451 arginyl-tRNA syntheta 33.7 24 0.00051 39.9 1.8 31 139-170 126-156 (562)
192 TIGR03330 SAM_DCase_Bsu S-aden 33.3 56 0.0012 29.4 3.8 32 52-93 76-107 (112)
193 PF00750 tRNA-synt_1d: tRNA sy 32.8 17 0.00037 38.4 0.5 36 139-175 33-68 (354)
194 PLN02413 choline-phosphate cyt 32.6 59 0.0013 34.3 4.3 40 49-98 24-63 (294)
195 PRK01706 S-adenosylmethionine 31.1 63 0.0014 29.7 3.8 34 52-95 79-112 (123)
196 PLN02286 arginine-tRNA ligase 30.3 29 0.00063 39.4 1.8 31 139-170 130-160 (576)
197 PF08679 DsrD: Dissimilatory s 29.0 70 0.0015 26.8 3.4 42 306-356 21-63 (67)
198 PRK12285 tryptophanyl-tRNA syn 28.5 63 0.0014 34.8 3.9 38 51-95 65-103 (368)
199 TIGR00467 lysS_arch lysyl-tRNA 28.4 37 0.00079 38.2 2.2 87 402-496 207-299 (515)
200 PRK13354 tyrosyl-tRNA syntheta 28.2 1.2E+02 0.0026 33.2 6.0 42 50-97 31-73 (410)
201 KOG1247|consensus 26.3 34 0.00073 38.0 1.4 44 302-346 86-131 (567)
202 KOG2638|consensus 26.3 56 0.0012 36.2 3.0 28 73-102 223-250 (498)
203 KOG1148|consensus 26.0 72 0.0016 36.9 3.9 53 60-113 255-335 (764)
204 PRK00458 S-adenosylmethionine 25.9 81 0.0018 29.1 3.6 33 52-94 89-121 (127)
205 PRK04025 S-adenosylmethionine 24.8 98 0.0021 29.1 4.0 34 52-95 77-110 (139)
206 PF09957 DUF2191: Uncharacteri 24.7 1.1E+02 0.0024 23.6 3.6 13 100-112 6-18 (47)
207 TIGR03838 queuosine_YadB gluta 24.2 50 0.0011 34.2 2.1 38 60-103 7-44 (272)
208 KOG2145|consensus 24.2 1E+02 0.0022 33.0 4.3 51 50-107 83-133 (397)
209 KOG1610|consensus 24.0 1.8E+02 0.0038 31.2 6.0 49 76-126 188-243 (322)
210 PRK03124 S-adenosylmethionine 24.0 95 0.0021 28.7 3.7 34 52-95 77-110 (127)
211 KOG2804|consensus 23.8 36 0.00079 36.1 1.0 42 49-100 60-101 (348)
212 PRK02770 S-adenosylmethionine 23.3 1E+02 0.0023 29.0 3.8 35 52-96 90-124 (139)
213 PF08784 RPA_C: Replication pr 23.2 94 0.002 26.7 3.3 23 328-350 79-101 (102)
214 TIGR00234 tyrS tyrosyl-tRNA sy 22.8 85 0.0019 33.8 3.6 38 53-96 31-69 (377)
215 KOG1147|consensus 21.9 1.2E+02 0.0025 35.0 4.5 16 60-75 207-222 (712)
216 PLN02486 aminoacyl-tRNA ligase 21.0 48 0.001 36.0 1.3 49 428-480 224-276 (383)
217 KOG0074|consensus 20.4 34 0.00073 33.1 -0.0 22 407-428 153-175 (185)
218 KOG3786|consensus 20.2 28 0.00061 37.8 -0.6 36 234-275 304-340 (395)
No 1
>KOG2007|consensus
Probab=100.00 E-value=2e-113 Score=898.72 Aligned_cols=308 Identities=51% Similarity=0.884 Sum_probs=280.3
Q ss_pred hccccCCCCCCCCC-CCCCCceEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCC
Q psy13464 12 SYATSCESPKWSLP-SGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHI 90 (515)
Q Consensus 12 ~~~~~~~~~~~~~p-~~~~~~l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~ 90 (515)
..+..+.||+|..| .+..+.|+||||+||+|++|+|.++++|+||+|||||||..||||||+||.||||+|+|+||+||
T Consensus 14 ~~~~~~~q~~w~~p~~~~~~~L~lYNslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy 93 (586)
T KOG2007|consen 14 RAAVKRVQPHWDQPNAGQPTELKLYNSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGY 93 (586)
T ss_pred hcccCCCCcccCCCCCCCCCeEEEeeccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCc
Confidence 45677889999999 77789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccc
Q psy13464 91 HSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVI 170 (515)
Q Consensus 91 ~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v 170 (515)
+|.|||||||||||||+||++- . |
T Consensus 94 ~V~~vmNiTDVDDKII~RAr~~-------------~--------------------------------m----------- 117 (586)
T KOG2007|consen 94 DVTFVMNITDVDDKIIKRARKE-------------E--------------------------------M----------- 117 (586)
T ss_pred ceEEEecccchhHHHHHHhhhh-------------h--------------------------------h-----------
Confidence 9999999999999999999831 0 0
Q ss_pred cccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhh
Q psy13464 171 SSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQ 250 (515)
Q Consensus 171 ~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~ 250 (515)
++.+..+.
T Consensus 118 -----------------~e~~~~l~------------------------------------------------------- 125 (586)
T KOG2007|consen 118 -----------------GEKPLSLS------------------------------------------------------- 125 (586)
T ss_pred -----------------ccchhhHH-------------------------------------------------------
Confidence 11111000
Q ss_pred hcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHH
Q psy13464 251 KCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPH 330 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~ 330 (515)
++| .+ |+++|.+||.+|||++||+.+|||||||+
T Consensus 126 ----------------~~F----~~--------------------------~e~eF~~DM~~LnvLpPtv~tRVSeyvp~ 159 (586)
T KOG2007|consen 126 ----------------ERF----CY--------------------------YEEEFLQDMAALNVLPPTVQTRVSEYVPQ 159 (586)
T ss_pred ----------------HHH----HH--------------------------HHHHHHHHHHHhCCCCCcccchhhhchHH
Confidence 111 13 99999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCeeeecCCcEEEeccCCCC-cceecccCCCC------CccCcccCccCccccccccCCCCcccCCCCC
Q psy13464 331 IQSFIQTLLDTKQAYIGSDHSVYFDVDSFPH-YFKLWGRNENI------TQHAVKRSPFDFALWKSAKPGEPWYESAWGK 403 (515)
Q Consensus 331 iie~I~kLidnG~AYe~kdGsVYFDv~~~~~-YG~Ls~~~~~~------t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~ 403 (515)
||+||++||+||+||. .+|+|||||++++. ||+|+++..++ .++..||+|.||||||++|||||+|+||||+
T Consensus 160 II~fIqkIIdnG~aY~-~dGsVYFdv~kf~~~YgKL~G~~~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~ 238 (586)
T KOG2007|consen 160 IIKFIQKIIDNGYAYA-VDGSVYFDVDKFPHSYGKLVGQRKNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGK 238 (586)
T ss_pred HHHHHHHHHhCCceee-eCCcEEEecccccchhhhhcCchhhcccCcCccccccCCChhhhhhhhhcCCCCCCCCCCCCC
Confidence 9999999999999999 59999999999995 99999755311 2468999999999999999999999999999
Q ss_pred CCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceecccc
Q psy13464 404 GRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLS 483 (515)
Q Consensus 404 GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~ 483 (515)
||||||||||||+..+||.++|||+||+||.||||||||||+||++...+|+|||+|+|||+++|+|||||++||||..+
T Consensus 239 GRPGWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke 318 (586)
T KOG2007|consen 239 GRPGWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKE 318 (586)
T ss_pred CCCCceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHH
Confidence 99999999999999999999999999999999999999999999998777999999999999999999999999999999
Q ss_pred ccccccCccccC
Q psy13464 484 GSTIGYTRDTCA 495 (515)
Q Consensus 484 li~~~y~~D~~~ 495 (515)
.++. |+.+..|
T Consensus 319 ~Lk~-~sp~qLR 329 (586)
T KOG2007|consen 319 ALKK-YSPRQLR 329 (586)
T ss_pred HHHh-cCHHHHH
Confidence 9999 9988544
No 2
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-113 Score=900.53 Aligned_cols=283 Identities=43% Similarity=0.773 Sum_probs=265.3
Q ss_pred ceEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHH
Q psy13464 31 GIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKAN 110 (515)
Q Consensus 31 ~l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~ 110 (515)
.|+||||+||+|++|.|.++++|+||+|||||||++||||||+||+||+++|||+ +.||.|+|||||||||||||+||+
T Consensus 1 ~l~iyNTltr~ke~F~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~-~~Gy~V~yV~NiTDIDDKIi~rA~ 79 (464)
T COG0215 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLR-YLGYKVTYVRNITDIDDKIINRAR 79 (464)
T ss_pred CcEEEecCccceecccCCCCCeEEEEecCCccCCccccccCcceehHHHHHHHHH-HhCCeEEEEeccccccHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999 789999999999999999999999
Q ss_pred hhhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccc
Q psy13464 111 SLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKED 190 (515)
Q Consensus 111 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~ 190 (515)
+. +.+
T Consensus 80 ~~---------------------------------------------------------------------------g~~ 84 (464)
T COG0215 80 EE---------------------------------------------------------------------------GLS 84 (464)
T ss_pred Hh---------------------------------------------------------------------------CCC
Confidence 97 444
Q ss_pred hHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhh
Q psy13464 191 YKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFI 270 (515)
Q Consensus 191 ~~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~ 270 (515)
+.++
T Consensus 85 ~~ev---------------------------------------------------------------------------- 88 (464)
T COG0215 85 IREV---------------------------------------------------------------------------- 88 (464)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 4433
Q ss_pred hhhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCC
Q psy13464 271 SLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDH 350 (515)
Q Consensus 271 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdG 350 (515)
+.+ |+++|++||++|||++||.+||||+||++||++|++|+++||||+..+|
T Consensus 89 --~~~--------------------------~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G 140 (464)
T COG0215 89 --AER--------------------------YIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDG 140 (464)
T ss_pred --HHH--------------------------HHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEecCC
Confidence 344 9999999999999999999999999999999999999999999996689
Q ss_pred cEEEeccCCCCcceeccc-CC-------CCCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCC
Q psy13464 351 SVYFDVDSFPHYFKLWGR-NE-------NITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGG 422 (515)
Q Consensus 351 sVYFDv~~~~~YG~Ls~~-~~-------~~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~ 422 (515)
+|||||++|++||+||++ ++ ....+..||||.||+|||.++||||+|+||||+||||||||||||+.++||.
T Consensus 141 ~VYFdv~~f~~YG~LS~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~ 220 (464)
T COG0215 141 DVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGE 220 (464)
T ss_pred cEEEecccchhhHhhcCCCChhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCC
Confidence 999999999999999976 43 2345667999999999999999999999999999999999999999999999
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCcccc
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTC 494 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~ 494 (515)
+|||||||+||+|||||||||||+|++|.++|+|||||+|||+++|+|||||+|||||+.++++. |+....
T Consensus 221 ~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~-~~p~~l 291 (464)
T COG0215 221 TFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKK-YDPEVL 291 (464)
T ss_pred CcceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhh-cCHHHH
Confidence 99999999999999999999999999997789999999999999999999999999999999999 876543
No 3
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=1.8e-104 Score=856.62 Aligned_cols=290 Identities=40% Similarity=0.712 Sum_probs=272.2
Q ss_pred CCCCCCCceEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcch
Q psy13464 24 LPSGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDD 103 (515)
Q Consensus 24 ~p~~~~~~l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDD 103 (515)
.|.+..++|+||||+||+|++|+|.++++|+||+||||||+.+||||+|+||++|+|+|||+ +.||+|.||+|+|||||
T Consensus 52 ~~~~~~~~l~lyNTltr~ke~f~P~~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr-~~Gy~V~~V~niTDiDD 130 (557)
T PLN02946 52 APASRGRELHLYNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLK-HLGYEVRYVRNFTDVDD 130 (557)
T ss_pred CcCCCCCceEEEECCCCCeeccccCCCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHH-hcCCcEEEEECCCCccC
Confidence 34555688999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 104 KIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 104 KIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
|||++|++.
T Consensus 131 KIi~~A~~~----------------------------------------------------------------------- 139 (557)
T PLN02946 131 KIIARANEL----------------------------------------------------------------------- 139 (557)
T ss_pred HHHHHHHHc-----------------------------------------------------------------------
Confidence 999999986
Q ss_pred hcccccchHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcc
Q psy13464 184 ANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKV 263 (515)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~ 263 (515)
+.++.+++
T Consensus 140 ----g~~~~ela-------------------------------------------------------------------- 147 (557)
T PLN02946 140 ----GEDPISLS-------------------------------------------------------------------- 147 (557)
T ss_pred ----CCCHHHHH--------------------------------------------------------------------
Confidence 55665433
Q ss_pred cchhHhhhhhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCC
Q psy13464 264 FSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQ 343 (515)
Q Consensus 264 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~ 343 (515)
++ |+++|++||++|||++|+++||+|+||++|+++|++|++||+
T Consensus 148 ----------~~--------------------------y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i~~Li~kG~ 191 (557)
T PLN02946 148 ----------RR--------------------------YCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGC 191 (557)
T ss_pred ----------HH--------------------------HHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHHHHHHHCCC
Confidence 34 999999999999999999999999999999999999999999
Q ss_pred eeeecCCcEEEeccCCCCcceecccCCC-------CCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhh
Q psy13464 344 AYIGSDHSVYFDVDSFPHYFKLWGRNEN-------ITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMA 416 (515)
Q Consensus 344 AYe~kdGsVYFDv~~~~~YG~Ls~~~~~-------~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~ 416 (515)
||+ .+|+|||||++|++||+||++++. ...+..||||.||||||+++||||+|+||||+||||||||||||+
T Consensus 192 aY~-~~g~VYFdv~~f~~YG~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs 270 (557)
T PLN02946 192 AYR-VDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMS 270 (557)
T ss_pred EEE-ECCeEEEecCcchhhhhcCCCChhHhhcCCCCCcccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHH
Confidence 998 789999999999999999999861 234567999999999999999999999999999999999999999
Q ss_pred hhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccCC
Q psy13464 417 SHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 417 ~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
++|||.+|||||||+||+|||||||+||++|++| .+|+|||||+|||+++|+|||||+|||||++++++. ||+|+.|-
T Consensus 271 ~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g-~~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~-y~~dalR~ 348 (557)
T PLN02946 271 AAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACC-DSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDL-YHPLALRL 348 (557)
T ss_pred HHHcCCCeeEeccccccCCCcccchHHHHHHHhC-CCCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHh-cCccceee
Confidence 9999999999999999999999999999999988 589999999999999999999999999999999999 99997664
No 4
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=2.6e-105 Score=806.69 Aligned_cols=269 Identities=46% Similarity=0.800 Sum_probs=223.1
Q ss_pred cccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhccc
Q psy13464 45 FIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYF 124 (515)
Q Consensus 45 f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~ 124 (515)
|.|++++.|+||+||||||+.+||||||+||++|+|+|+|+ ++||+|+|||||||||||||++|++.
T Consensus 1 F~p~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~-~~g~~V~~V~NiTDiDDKii~~A~~~------------ 67 (300)
T PF01406_consen 1 FKPLNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLE-YLGYDVTYVMNITDIDDKIIKRAREE------------ 67 (300)
T ss_dssp ---SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHH-HTT-EEEEEEEEB-SSHHHHHHHHHT------------
T ss_pred CcCCCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHH-HcCCeEEEEEeccccchHHHHHHHhc------------
Confidence 78999999999999999999999999999999999999999 79999999999999999999999997
Q ss_pred chhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHH
Q psy13464 125 LPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIF 204 (515)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~ 204 (515)
+.++.++
T Consensus 68 ---------------------------------------------------------------g~~~~el---------- 74 (300)
T PF01406_consen 68 ---------------------------------------------------------------GVSPQEL---------- 74 (300)
T ss_dssp ---------------------------------------------------------------TS-HHHH----------
T ss_pred ---------------------------------------------------------------cCCHHHH----------
Confidence 5555432
Q ss_pred HHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhcc
Q psy13464 205 KILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLL 284 (515)
Q Consensus 205 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 284 (515)
+++
T Consensus 75 --------------------------------------------------------------------a~~--------- 77 (300)
T PF01406_consen 75 --------------------------------------------------------------------ARR--------- 77 (300)
T ss_dssp --------------------------------------------------------------------HHH---------
T ss_pred --------------------------------------------------------------------HHH---------
Confidence 344
Q ss_pred CCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCCCcce
Q psy13464 285 GPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFK 364 (515)
Q Consensus 285 ~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~~YG~ 364 (515)
|+++|++||++|||++|+.+|||||||++|+++|++|++||+||+..+|+|||||+++++||+
T Consensus 78 -----------------y~~~f~~dm~~Lnv~~p~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~ 140 (300)
T PF01406_consen 78 -----------------YEEEFFEDMKALNVLPPDHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDYGK 140 (300)
T ss_dssp -----------------HHHHHHHHHHHTT----SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTTTT
T ss_pred -----------------HHHHHHHHHHHcCCCCCccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecccccccc
Confidence 999999999999999999999999999999999999999999999555999999999999999
Q ss_pred ecccCCC-------CCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCc
Q psy13464 365 LWGRNEN-------ITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPH 437 (515)
Q Consensus 365 Ls~~~~~-------~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPH 437 (515)
||+++++ ...++.||||.||||||.+++|||+|+||||+||||||||||||+.++||.+||||+||+||+|||
T Consensus 141 Ls~~~~~~l~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPH 220 (300)
T PF01406_consen 141 LSNQDLEDLEAGARVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPH 220 (300)
T ss_dssp TTT-SHHHHHHCHHHTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTH
T ss_pred ccccchhhHHhhhhcccccccCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCC
Confidence 9999872 234588999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 438 HENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 438 HENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
||||+||++|++| ++|+|||||+|||+++|+|||||+|||||+.+++++ |+.++.|
T Consensus 221 HENEiAqs~a~~g-~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~-~~~~~lR 276 (300)
T PF01406_consen 221 HENEIAQSEAATG-KPFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKK-YSPDALR 276 (300)
T ss_dssp HHHHHHHHHHHHS-S-SEEEEEEE--EEETTCE--TTTT---BHHHHHTT-S-HHHHH
T ss_pred ccchHHHHHHhhC-chHHHHHHHHHHHhhcCccccccCCCEEEHHHHhhc-CCHHHHH
Confidence 9999999999998 689999999999999999999999999999999999 9987543
No 5
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=3.9e-104 Score=870.08 Aligned_cols=305 Identities=49% Similarity=0.839 Sum_probs=282.3
Q ss_pred hhccccCCCCCCCCCCCC---CCceEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHh
Q psy13464 11 LSYATSCESPKWSLPSGY---DTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHY 87 (515)
Q Consensus 11 ~~~~~~~~~~~~~~p~~~---~~~l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~ 87 (515)
..++.++.||+|.+|+.. .++|+|||||||+|+||+|.++++|+||+|||||||.+||||||+||++|||+|||+|+
T Consensus 16 ~~~~~~~~~~~w~~p~~~~~~~~~l~lyNtlt~~k~~f~p~~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~ 95 (651)
T PTZ00399 16 TGQVSKSRLPEWKKPSKEGKYLTGLKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDY 95 (651)
T ss_pred cccCCCCCCCCCCCCCccCCCCCceEEEECCCCCccccccCCCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHh
Confidence 346678999999999853 37899999999999999999999999999999999999999999999999999999989
Q ss_pred CCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhc
Q psy13464 88 FHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHS 167 (515)
Q Consensus 88 ~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l 167 (515)
+||+|.|||||||||||||++|++.
T Consensus 96 ~Gy~V~~v~nitDidDKIi~~A~~~------------------------------------------------------- 120 (651)
T PTZ00399 96 FGYDVFYVMNITDIDDKIIKRAREE------------------------------------------------------- 120 (651)
T ss_pred cCCceEEEeCCCCcchHHHHHHHHh-------------------------------------------------------
Confidence 9999999999999999999999986
Q ss_pred ccccccCcchhHHHhhhcccccc-hHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhch
Q psy13464 168 IVISSVTDIDDKIINKANSLKED-YKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQ 246 (515)
Q Consensus 168 ~~v~niTDiddKii~ra~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~ 246 (515)
+.+ +.+
T Consensus 121 --------------------g~~~~~e----------------------------------------------------- 127 (651)
T PTZ00399 121 --------------------KLSIFLE----------------------------------------------------- 127 (651)
T ss_pred --------------------CCCcHHH-----------------------------------------------------
Confidence 333 332
Q ss_pred hhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccc
Q psy13464 247 IKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSE 326 (515)
Q Consensus 247 ~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTe 326 (515)
|+++ |+++|++||++|||++|+++||||+
T Consensus 128 -------------------------l~~~--------------------------~~~~f~~d~~~Lni~~p~~~~r~te 156 (651)
T PTZ00399 128 -------------------------LARK--------------------------WEKEFFEDMKALNVRPPDVITRVSE 156 (651)
T ss_pred -------------------------HHHH--------------------------HHHHHHHHHHHcCCCCCccccCcCc
Confidence 3345 9999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC----CcceecccCC----------C-CCc-cCcccCccCccccccc
Q psy13464 327 FIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP----HYFKLWGRNE----------N-ITQ-HAVKRSPFDFALWKSA 390 (515)
Q Consensus 327 hI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~----~YG~Ls~~~~----------~-~t~-~~~Kr~~~DFaLWK~~ 390 (515)
||++|++||++|++||+||+ .+|+||||+++|+ .||+|++.+. . +.. .+.||||.||||||.+
T Consensus 157 hi~~ii~~i~~Li~~G~aY~-~~gsvyFd~~~f~~~~~~Yg~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~ 235 (651)
T PTZ00399 157 YVPEIVDFIQKIIDNGFAYE-SNGSVYFDVEAFRKAGHVYPKLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKAS 235 (651)
T ss_pred cHHHHHHHHHHHHHCCCEEE-ECCeEEEEchhcccchhhHHhhChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCC
Confidence 99999999999999999998 7999999999997 8999995332 1 212 2479999999999999
Q ss_pred cCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCc
Q psy13464 391 KPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGT 470 (515)
Q Consensus 391 ~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~K 470 (515)
+||||.|+||||+||||||||||||+.++||.++|||+||+||+||||||||||++|++|+.+|+|||||+|||+++|+|
T Consensus 236 kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~K 315 (651)
T PTZ00399 236 KPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLK 315 (651)
T ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccch
Confidence 99999999999999999999999999999999999999999999999999999999999977999999999999999999
Q ss_pred ccccccceeccccccccccCccccCC
Q psy13464 471 RRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 471 MSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
||||+|||||++++++. ||+|+.|-
T Consensus 316 MSKSLGNfItp~dlLek-ygaDaLR~ 340 (651)
T PTZ00399 316 MSKSLKNFITIRQALSK-YTARQIRL 340 (651)
T ss_pred hhhcCCCcccHHHHHHH-cChHHHHH
Confidence 99999999999999999 99997654
No 6
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.8e-102 Score=848.19 Aligned_cols=285 Identities=39% Similarity=0.686 Sum_probs=267.5
Q ss_pred CceEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHH
Q psy13464 30 TGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKA 109 (515)
Q Consensus 30 ~~l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A 109 (515)
++|+|||||||+|++|.|.+++.|+||+||||||+.+||||||+||++|+|+|||+ +.||+|.||+|+||||||||++|
T Consensus 226 ~~l~lyNTltr~ke~f~P~~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr-~~Gy~V~fV~NiTD~DDKII~~A 304 (699)
T PRK14535 226 PMTTIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-ECGYPLTYVRNITDIDDKIIARA 304 (699)
T ss_pred CceEEEECCCCCeeccccCCCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHH-HcCCceEEEeCCcccchHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred HhhhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhccccc
Q psy13464 110 NSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKE 189 (515)
Q Consensus 110 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~ 189 (515)
++. +.
T Consensus 305 ~e~---------------------------------------------------------------------------G~ 309 (699)
T PRK14535 305 AEN---------------------------------------------------------------------------GE 309 (699)
T ss_pred HHc---------------------------------------------------------------------------CC
Confidence 986 66
Q ss_pred chHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHh
Q psy13464 190 DYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVF 269 (515)
Q Consensus 190 ~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~ 269 (515)
++++++
T Consensus 310 sp~ela-------------------------------------------------------------------------- 315 (699)
T PRK14535 310 TIGELT-------------------------------------------------------------------------- 315 (699)
T ss_pred CHHHHH--------------------------------------------------------------------------
Confidence 666433
Q ss_pred hhhhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecC
Q psy13464 270 ISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSD 349 (515)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kd 349 (515)
.+ |+++|+++|++|||++|+++||+|+||+.|+++|++|+++|+||+..+
T Consensus 316 ----~~--------------------------y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI~~LidkG~AYe~~~ 365 (699)
T PRK14535 316 ----AR--------------------------FIQAMHEDADALGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAAN 365 (699)
T ss_pred ----HH--------------------------HHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHHHHHHHCCCEEEeCC
Confidence 33 999999999999999999999999999999999999999999998447
Q ss_pred CcEEEeccCCCCcceecccCCC-------CCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCC
Q psy13464 350 HSVYFDVDSFPHYFKLWGRNEN-------ITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGG 422 (515)
Q Consensus 350 GsVYFDv~~~~~YG~Ls~~~~~-------~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~ 422 (515)
|+|||||+++++||+||+++++ +..+..||||.||||||++++|||+|+||||+||||||||||||+++|||.
T Consensus 366 gsVYFdV~~f~~YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~ 445 (699)
T PRK14535 366 GDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGD 445 (699)
T ss_pred CCEEEecccccccccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCC
Confidence 8999999999999999998761 223456999999999999999999999999999999999999999999999
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCC---------------CcccEEEEeeeeeeCCCcccccccceecccccccc
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQS---------------QWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTI 487 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~---------------~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~ 487 (515)
+|||||||+||+||||||||||++|++|+. +|+|||||+|||+++|+|||||+||+||+.++++.
T Consensus 446 ~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ 525 (699)
T PRK14535 446 TFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQ 525 (699)
T ss_pred cceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHh
Confidence 999999999999999999999999998852 59999999999999999999999999999999999
Q ss_pred ccCccccC
Q psy13464 488 GYTRDTCA 495 (515)
Q Consensus 488 ~y~~D~~~ 495 (515)
||+|+.|
T Consensus 526 -ygpdalR 532 (699)
T PRK14535 526 -YDPEVVR 532 (699)
T ss_pred -CCHHHHH
Confidence 9999655
No 7
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=1.8e-101 Score=809.07 Aligned_cols=294 Identities=27% Similarity=0.461 Sum_probs=269.5
Q ss_pred CCCCCCCCCCCceEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccC
Q psy13464 20 PKWSLPSGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVT 99 (515)
Q Consensus 20 ~~~~~p~~~~~~l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiT 99 (515)
|....-++..++|+|||||||+|++|+| +++|+||+||||||+.+||||+|+||++|+++|||+ +.||+|.||+|+|
T Consensus 6 ~~~~~~~~~~~~l~lyntlt~~~~~f~p--~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr-~~G~~V~fV~nit 82 (411)
T TIGR03447 6 PEVPALPGTGPPLRLFDTADGQVRPVEP--GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWR-DAGHRVHYVQNVT 82 (411)
T ss_pred CCCCCCCCCCCceEEEECCCCCeeeccC--CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHH-hcCCceEEeeCCC
Confidence 3333333456889999999999999999 788999999999999999999999999999999999 7999999999999
Q ss_pred CcchHHHHHHHhhhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhH
Q psy13464 100 DIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDK 179 (515)
Q Consensus 100 DiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddK 179 (515)
|||||||++|++.
T Consensus 83 D~dDKIi~~A~~~------------------------------------------------------------------- 95 (411)
T TIGR03447 83 DVDDPLFERAERD------------------------------------------------------------------- 95 (411)
T ss_pred chhHHHHHHHHHc-------------------------------------------------------------------
Confidence 9999999999986
Q ss_pred HHhhhcccccchHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccC
Q psy13464 180 IINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFK 259 (515)
Q Consensus 180 ii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~ 259 (515)
+.++++++
T Consensus 96 --------g~t~~ela---------------------------------------------------------------- 103 (411)
T TIGR03447 96 --------GVDWRELG---------------------------------------------------------------- 103 (411)
T ss_pred --------CCCHHHHH----------------------------------------------------------------
Confidence 66666443
Q ss_pred CCcccchhHhhhhhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHH
Q psy13464 260 DGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLL 339 (515)
Q Consensus 260 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLi 339 (515)
++ |+++|+++|++|||.+||.+||+|+||+.|+++|++|+
T Consensus 104 --------------~~--------------------------y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~~L~ 143 (411)
T TIGR03447 104 --------------TS--------------------------QIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVEKLL 143 (411)
T ss_pred --------------HH--------------------------HHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHHHHH
Confidence 33 99999999999999999999999999999999999999
Q ss_pred HCCCeeeecCC----cEEEeccCCCCcceecccCCC----------CC-ccCcccCccCccccccccCCCCcccCCCCCC
Q psy13464 340 DTKQAYIGSDH----SVYFDVDSFPHYFKLWGRNEN----------IT-QHAVKRSPFDFALWKSAKPGEPWYESAWGKG 404 (515)
Q Consensus 340 dnG~AYe~kdG----sVYFDv~~~~~YG~Ls~~~~~----------~t-~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~G 404 (515)
+||+||+ ++| +|||||+++++||+||++++. .. .++.||||.||||||.+++|||+|+||||+|
T Consensus 144 ~kG~aY~-~~~~~~~~VYFdv~~~~~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~G 222 (411)
T TIGR03447 144 AAGAAYE-VEGPEYPDVYFSIEATEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGPG 222 (411)
T ss_pred HCCCEEe-cCCCCcCcEEEeccchhccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCCCC
Confidence 9999998 565 899999999999999998751 11 2457999999999999999999999999999
Q ss_pred CCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccc
Q psy13464 405 RPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSG 484 (515)
Q Consensus 405 RPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~l 484 (515)
|||||||||||+.++||.+||||+||+||+||||||||||++|++|+.+|+|||||+|+|.++|+|||||+||+||+.++
T Consensus 223 RPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl 302 (411)
T TIGR03447 223 RPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKL 302 (411)
T ss_pred CChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999986689999999999999999999999999999999
Q ss_pred cccccCccccCC
Q psy13464 485 STIGYTRDTCAG 496 (515)
Q Consensus 485 i~~~y~~D~~~~ 496 (515)
++.||+.|+.|-
T Consensus 303 ~~~g~dp~~lRl 314 (411)
T TIGR03447 303 RAAGVDPAAIRL 314 (411)
T ss_pred HhcCCCcccEEE
Confidence 887888776553
No 8
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.4e-99 Score=809.84 Aligned_cols=283 Identities=32% Similarity=0.609 Sum_probs=263.0
Q ss_pred ceEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCc---------
Q psy13464 31 GIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDI--------- 101 (515)
Q Consensus 31 ~l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDi--------- 101 (515)
+|+|||||||+|++|.|.+++.|+||+||||||+.+||||+|+||++|+++|||+ ++||+|.||+|||||
T Consensus 2 ~l~lyntlt~~ke~f~p~~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~-~~G~~V~~v~NiTDv~hl~~~~De 80 (490)
T PRK14536 2 ALRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLH-FLGYRVTHVMNITDVGHLTDDADS 80 (490)
T ss_pred ceEEEecCCCCeeccccCCCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHH-hcCCceEEEEeeccccccccCCcC
Confidence 5999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred -chHHHHHHHhhhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHH
Q psy13464 102 -DDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKI 180 (515)
Q Consensus 102 -DDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKi 180 (515)
|||||++|++.
T Consensus 81 ~ddKii~~A~~~-------------------------------------------------------------------- 92 (490)
T PRK14536 81 GEDKMVKSAQEH-------------------------------------------------------------------- 92 (490)
T ss_pred CChHHHHHHHHc--------------------------------------------------------------------
Confidence 88888877765
Q ss_pred HhhhcccccchHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCC
Q psy13464 181 INKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKD 260 (515)
Q Consensus 181 i~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~ 260 (515)
+.++++++
T Consensus 93 -------g~~~~e~a----------------------------------------------------------------- 100 (490)
T PRK14536 93 -------GKSVLEIA----------------------------------------------------------------- 100 (490)
T ss_pred -------CCCHHHHH-----------------------------------------------------------------
Confidence 66666443
Q ss_pred CcccchhHhhhhhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHH
Q psy13464 261 GKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLD 340 (515)
Q Consensus 261 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLid 340 (515)
.+ |++.|+++|++|||.+|+++||+|+||+.|+++|++|++
T Consensus 101 -------------~~--------------------------~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~ 141 (490)
T PRK14536 101 -------------AH--------------------------YTAAFFRDTARLNIERPSIVCNATEHIQDMIALIKRLEA 141 (490)
T ss_pred -------------HH--------------------------HHHHHHHHHHHcCCCCCceecCcccHHHHHHHHHHHHHH
Confidence 34 999999999999999999999999999999999999999
Q ss_pred CCCeeeecCCcEEEeccCCCCcceecccCC-------CCCccCcccCccCcccccccc--CC-CCcccCCCCCCCCCccc
Q psy13464 341 TKQAYIGSDHSVYFDVDSFPHYFKLWGRNE-------NITQHAVKRSPFDFALWKSAK--PG-EPWYESAWGKGRPGWHI 410 (515)
Q Consensus 341 nG~AYe~kdGsVYFDv~~~~~YG~Ls~~~~-------~~t~~~~Kr~~~DFaLWK~~~--~g-ep~W~SpwG~GRPGWHi 410 (515)
||+||+ ++|+|||||+++++||+||+++. .++.+..||||.||||||..+ ++ +|+|+||||+|||||||
T Consensus 142 kG~aY~-~~~~vyFdv~~~~~YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHI 220 (490)
T PRK14536 142 RGHTYC-AGGNVYFDIRTFPSYGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHI 220 (490)
T ss_pred CCCEEE-ECCeEEEeCCcccchhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHH
Confidence 999998 78999999999999999999876 123456799999999999864 44 58999999999999999
Q ss_pred ccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccC
Q psy13464 411 ECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYT 490 (515)
Q Consensus 411 ECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~ 490 (515)
|||||+++|||.++|||+||+||+|||||||+||++|++| .+|+|||||+|+|+++|+|||||+|||||++++++.||+
T Consensus 221 ECsaMs~~~lg~~~DIH~GG~DliFPHHeneiAqs~a~~g-~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~ 299 (490)
T PRK14536 221 ECSAMSMKYLGEQCDIHIGGVDHIRVHHTNEIAQCEAATG-KPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQ 299 (490)
T ss_pred HHHHHHHHHcCCceeEEeccccCCCcchhhHHHHHHHhcC-CCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCC
Confidence 9999999999999999999999999999999999999988 589999999999999999999999999999999999999
Q ss_pred ccccC
Q psy13464 491 RDTCA 495 (515)
Q Consensus 491 ~D~~~ 495 (515)
.|+.|
T Consensus 300 ~~alR 304 (490)
T PRK14536 300 PLDYR 304 (490)
T ss_pred HHHHH
Confidence 87554
No 9
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3e-97 Score=789.78 Aligned_cols=282 Identities=28% Similarity=0.501 Sum_probs=262.7
Q ss_pred CceEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCc--------
Q psy13464 30 TGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDI-------- 101 (515)
Q Consensus 30 ~~l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDi-------- 101 (515)
++|+||||+||+|++|.|. ++|+||+||||||+++||||+|+||++|+++|||+ +.||+|.||||||||
T Consensus 1 ~~l~lynTltr~ke~f~p~--~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~-~~G~~V~~v~NiTDIghltg~~D 77 (481)
T PRK14534 1 MLLKLYNTKTKDLSELKNF--SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLR-LLKYNVNYAMNITDIGHLTGDFD 77 (481)
T ss_pred CceEEEEcCCCCeeecccC--CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHH-HcCCceEEEEeccccccccCCcc
Confidence 3699999999999999997 68999999999999999999999999999999999 899999999999999
Q ss_pred --chHHHHHHHhhhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhH
Q psy13464 102 --DDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDK 179 (515)
Q Consensus 102 --DDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddK 179 (515)
|||||++|++.
T Consensus 78 ~gddKIi~~A~~~------------------------------------------------------------------- 90 (481)
T PRK14534 78 DGEDKVVKAARER------------------------------------------------------------------- 90 (481)
T ss_pred CCCcHHHHHHHHc-------------------------------------------------------------------
Confidence 99999999886
Q ss_pred HHhhhcccccchHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccC
Q psy13464 180 IINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFK 259 (515)
Q Consensus 180 ii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~ 259 (515)
+.++.+++
T Consensus 91 --------g~~~~e~a---------------------------------------------------------------- 98 (481)
T PRK14534 91 --------GLTVYEIS---------------------------------------------------------------- 98 (481)
T ss_pred --------CCCHHHHH----------------------------------------------------------------
Confidence 66666433
Q ss_pred CCcccchhHhhhhhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHH
Q psy13464 260 DGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLL 339 (515)
Q Consensus 260 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLi 339 (515)
.+ |++.|+++|++|||++|+++||+|+||+.|+++|++|+
T Consensus 99 --------------~~--------------------------~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~L~ 138 (481)
T PRK14534 99 --------------RF--------------------------FTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKVLE 138 (481)
T ss_pred --------------HH--------------------------HHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHHHH
Confidence 34 99999999999999999999999999999999999999
Q ss_pred HCCCeeeecCCcEEEeccCCCCcceecccCC-C--------CCccCcccCccCccccccc---cCCCCcccCCCCCCCCC
Q psy13464 340 DTKQAYIGSDHSVYFDVDSFPHYFKLWGRNE-N--------ITQHAVKRSPFDFALWKSA---KPGEPWYESAWGKGRPG 407 (515)
Q Consensus 340 dnG~AYe~kdGsVYFDv~~~~~YG~Ls~~~~-~--------~t~~~~Kr~~~DFaLWK~~---~~gep~W~SpwG~GRPG 407 (515)
+||+||+ ++|+||||++++++||+||++++ . +..+..|+||.||+|||.. +|++|+|+||||+||||
T Consensus 139 ~kG~aY~-~~~~vyFdv~~~~~YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPg 217 (481)
T PRK14534 139 ENGFTYF-VNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPS 217 (481)
T ss_pred HCCCEEE-ECCeEEEecccccchhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCc
Confidence 9999998 78999999999999999999876 1 1234579999999999975 79999999999999999
Q ss_pred cccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceecccccccc
Q psy13464 408 WHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTI 487 (515)
Q Consensus 408 WHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~ 487 (515)
||||||||+.++||.++|||+||+||+|||||||+||++|++| .++++||||+|+|+++|+|||||+|||||++++++.
T Consensus 218 WHiECsam~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~g-~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~ 296 (481)
T PRK14534 218 WHLECAAMNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYLN-KKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQ 296 (481)
T ss_pred HHHHHHHHHHHHcCCcceEEecccccCCCcchhHHHHHhhhcC-CCcceEEEEecEEEecCceecccCCCcccHHHHHhc
Confidence 9999999999999999999999999999999999999999987 589999999999999999999999999999999998
Q ss_pred ccCccccC
Q psy13464 488 GYTRDTCA 495 (515)
Q Consensus 488 ~y~~D~~~ 495 (515)
||+.++.|
T Consensus 297 ~~~~~alR 304 (481)
T PRK14534 297 GFSPLDFR 304 (481)
T ss_pred CCChhHHH
Confidence 89876543
No 10
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.9e-95 Score=757.53 Aligned_cols=269 Identities=31% Similarity=0.538 Sum_probs=247.1
Q ss_pred ccCCCC-ceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhccc
Q psy13464 46 IIQNKN-HLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYF 124 (515)
Q Consensus 46 ~~~~~~-~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~ 124 (515)
+|..++ +|+||+||||||+.+||||+|+||.+|+++|||+ +.|++|.||+|+||||||||++|++.
T Consensus 2 ~p~~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr-~~G~~V~~V~nitD~ddKIi~~A~~~------------ 68 (384)
T PRK12418 2 RPVAPGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWR-DAGHDVHYVQNVTDVDDPLLERAARD------------ 68 (384)
T ss_pred cCCCCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHH-HcCCceEEEEecCCcchHHHHHHHHc------------
Confidence 466777 9999999999999999999999999999999999 79999999999999999999999986
Q ss_pred chhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHH
Q psy13464 125 LPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIF 204 (515)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~ 204 (515)
+.++++++
T Consensus 69 ---------------------------------------------------------------G~~~~e~a--------- 76 (384)
T PRK12418 69 ---------------------------------------------------------------GVDWRDLA--------- 76 (384)
T ss_pred ---------------------------------------------------------------CCCHHHHH---------
Confidence 66666443
Q ss_pred HHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhcc
Q psy13464 205 KILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLL 284 (515)
Q Consensus 205 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 284 (515)
++
T Consensus 77 ---------------------------------------------------------------------~~--------- 78 (384)
T PRK12418 77 ---------------------------------------------------------------------ER--------- 78 (384)
T ss_pred ---------------------------------------------------------------------HH---------
Confidence 34
Q ss_pred CCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCC----cEEEeccCCC
Q psy13464 285 GPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDH----SVYFDVDSFP 360 (515)
Q Consensus 285 ~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdG----sVYFDv~~~~ 360 (515)
|+++|+++|++|||.+||.+||+|+||+.|+++|++|+++|+||+ ++| +|||||++++
T Consensus 79 -----------------~~~~f~~d~~~Lni~~~~~~~raTe~i~~~~~~i~~L~~kG~aY~-~~~~~~~~VYFdv~~~~ 140 (384)
T PRK12418 79 -----------------EIALFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYV-VDDEEYPDVYFSVDATP 140 (384)
T ss_pred -----------------HHHHHHHHHHHhCCCCCCccccCCCCHHHHHHHHHHHHHCCCEEE-eCCCCCccEEEecCchh
Confidence 999999999999998899999999999999999999999999998 566 9999999999
Q ss_pred CcceecccCC----C--C----C-ccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeee
Q psy13464 361 HYFKLWGRNE----N--I----T-QHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTG 429 (515)
Q Consensus 361 ~YG~Ls~~~~----~--~----t-~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~G 429 (515)
+||+||++++ + . . .++.||||.||+|||.++||+|+|+||||+||||||||||||++++||.++|||+|
T Consensus 141 ~YG~ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~G 220 (384)
T PRK12418 141 QFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGG 220 (384)
T ss_pred hcccccCCCHHHHHhhhcccccCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccC
Confidence 9999999875 1 1 1 24679999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 430 GIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 430 G~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
|+||+|||||||+||++|++|+.+|+|||||+|+|.++|+|||||+|||||+.++++.||+.++.|
T Consensus 221 G~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR 286 (384)
T PRK12418 221 GSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIR 286 (384)
T ss_pred ccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhhee
Confidence 999999999999999999998668999999999999999999999999999999865555544444
No 11
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.9e-93 Score=756.77 Aligned_cols=284 Identities=45% Similarity=0.772 Sum_probs=267.2
Q ss_pred CceEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHH
Q psy13464 30 TGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKA 109 (515)
Q Consensus 30 ~~l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A 109 (515)
++|+||||+||+|++|.|.+++.|+||+||||||+.+||||+|+||.+|+++|||+ +.|++|.||+|+|||||||+++|
T Consensus 1 ~~l~~~ntl~~~~~~f~p~~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr-~~G~~V~~v~~~tD~ddki~~~A 79 (463)
T PRK00260 1 MMLKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLR-YLGYKVTYVRNITDIDDKIIKRA 79 (463)
T ss_pred CceEEEECCCCceeecccCCCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHH-hcCCceEEeecCCCCcHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HhhhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhccccc
Q psy13464 110 NSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKE 189 (515)
Q Consensus 110 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~ 189 (515)
++. +.
T Consensus 80 ~~~---------------------------------------------------------------------------g~ 84 (463)
T PRK00260 80 NEE---------------------------------------------------------------------------GE 84 (463)
T ss_pred HHc---------------------------------------------------------------------------CC
Confidence 886 55
Q ss_pred chHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHh
Q psy13464 190 DYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVF 269 (515)
Q Consensus 190 ~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~ 269 (515)
++++++
T Consensus 85 ~~~e~~-------------------------------------------------------------------------- 90 (463)
T PRK00260 85 SIKELT-------------------------------------------------------------------------- 90 (463)
T ss_pred CHHHHH--------------------------------------------------------------------------
Confidence 555332
Q ss_pred hhhhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecC
Q psy13464 270 ISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSD 349 (515)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kd 349 (515)
.+ |+++|.++|++|||+.||.++|+|+|++.|+++|++|+++|+||+ ++
T Consensus 91 ----~~--------------------------~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~-~~ 139 (463)
T PRK00260 91 ----ER--------------------------YIAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYE-AD 139 (463)
T ss_pred ----HH--------------------------HHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEE-ec
Confidence 34 999999999999998899999999999999999999999999998 79
Q ss_pred CcEEEeccCCCCcceecccCC-------CCCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCC
Q psy13464 350 HSVYFDVDSFPHYFKLWGRNE-------NITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGG 422 (515)
Q Consensus 350 GsVYFDv~~~~~YG~Ls~~~~-------~~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~ 422 (515)
|+||||++++++||+||+++. ..+.+..||||.||||||.+++|+|.|+||||+||||||||||||+.++||.
T Consensus 140 ~~Vyfdv~~~~~yg~ls~~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~ 219 (463)
T PRK00260 140 GDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGE 219 (463)
T ss_pred CeEEEecccccccccCCCCCHHHHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCC
Confidence 999999999999999999876 1234457999999999999999999999999999999999999999999999
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccCC
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
++|||+||+||+||||||||||++|++| .+|+|||||+|+|.++|+|||||+||+||+.++++. ||+|+.|-
T Consensus 220 ~~Dih~gG~DlifpHh~neiaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~-~~~d~lR~ 291 (463)
T PRK00260 220 TFDIHGGGADLIFPHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKK-YDPEVLRF 291 (463)
T ss_pred CcceecCccccCCCchHhHHHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHH-cCchHhHH
Confidence 9999999999999999999999999999 799999999999999999999999999999999999 99997653
No 12
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=8.5e-93 Score=754.99 Aligned_cols=282 Identities=43% Similarity=0.738 Sum_probs=264.8
Q ss_pred eEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHh
Q psy13464 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANS 111 (515)
Q Consensus 32 l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~ 111 (515)
|+||||+||+|++|.|.++++|+||+||||||+.+||||+|+||.+|+++|||+ +.||+|.||+|+|||||||+++|++
T Consensus 1 l~lyntlt~~~e~f~p~~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr-~~G~~V~~v~n~tD~ddkIi~~A~~ 79 (465)
T TIGR00435 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLR-YLGYKVQYVQNITDIDDKIIKRARE 79 (465)
T ss_pred CeeEeCCCCCeeccccCCCCcceEEEecCccCCCcccccchHHHHHHHHHHHHH-HcCCcEEEEEeeCCccHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999 8999999999999999999999988
Q ss_pred hhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccch
Q psy13464 112 LKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDY 191 (515)
Q Consensus 112 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~ 191 (515)
. +.++
T Consensus 80 ~---------------------------------------------------------------------------g~~~ 84 (465)
T TIGR00435 80 N---------------------------------------------------------------------------GESV 84 (465)
T ss_pred c---------------------------------------------------------------------------CCCH
Confidence 6 5555
Q ss_pred HHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhh
Q psy13464 192 KTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFIS 271 (515)
Q Consensus 192 ~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~ 271 (515)
++++
T Consensus 85 ~e~a---------------------------------------------------------------------------- 88 (465)
T TIGR00435 85 YEVS---------------------------------------------------------------------------- 88 (465)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 5432
Q ss_pred hhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecC-C
Q psy13464 272 LPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSD-H 350 (515)
Q Consensus 272 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kd-G 350 (515)
.+ |++.|.++|++|||++|+.+||+|+|++.|+++|++|+++|+||+ ++ |
T Consensus 89 --~~--------------------------~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~-~~~g 139 (465)
T TIGR00435 89 --ER--------------------------FIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYV-SDNG 139 (465)
T ss_pred --HH--------------------------HHHHHHHHHHHhCCCCCcCCccccccHHHHHHHHHHHHHCCCEEE-ecCC
Confidence 33 999999999999999988899999999999999999999999998 66 9
Q ss_pred cEEEeccCCCCcceecccCCC-------CCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCC
Q psy13464 351 SVYFDVDSFPHYFKLWGRNEN-------ITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQ 423 (515)
Q Consensus 351 sVYFDv~~~~~YG~Ls~~~~~-------~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~ 423 (515)
+||||++++++||+||+++++ ...+..||||.||+|||.+++|+|.|+||||+||||||||||||+.++||.+
T Consensus 140 ~vyfdv~~~~~yG~ls~~~~~~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~ 219 (465)
T TIGR00435 140 DVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQ 219 (465)
T ss_pred cEEEeccccchhccCCCCCHHHHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCC
Confidence 999999999999999998761 2234569999999999999999999999999999999999999999999999
Q ss_pred ceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccCC
Q psy13464 424 VDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 424 ~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
+|||+||+||+|||||||+||++|++| .+|+++|||+|+|.++|+|||||+||+||+.++++. ||+|+.|-
T Consensus 220 ~Dih~gG~Dl~fpHhene~aqs~a~~g-~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~-~~~dalR~ 290 (465)
T TIGR00435 220 IDIHGGGVDLIFPHHENEIAQSEAAFG-KQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKN-YDPEILRY 290 (465)
T ss_pred ceeeccccccccchHHHHHHHHHHhcC-CCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHH-CCHHHHHH
Confidence 999999999999999999999999998 589999999999999999999999999999999999 99997653
No 13
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=3.2e-62 Score=473.99 Aligned_cols=199 Identities=44% Similarity=0.738 Sum_probs=188.4
Q ss_pred EEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhh
Q psy13464 33 KIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSL 112 (515)
Q Consensus 33 ~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l 112 (515)
+||||+||++++|.|..++++++|+||||||+.+||||+|+||.+|+++||+| +.|++|.|++|+||+||||+++|++.
T Consensus 1 ~~~~t~~~~~~~~~p~~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr-~~G~~V~~~~g~dd~g~ki~~~A~~~ 79 (213)
T cd00672 1 RLYNTLTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLE-DLGYKVRYVQNITDIDDKIIKRAREE 79 (213)
T ss_pred CcccCCCCceeeeecCCCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHH-hcCCeeEEEeecCCCCCHHHHHHHHc
Confidence 58999999999999999999999999999999999999999999999999999 89999999999999999999999986
Q ss_pred hhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchH
Q psy13464 113 KEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYK 192 (515)
Q Consensus 113 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~ 192 (515)
+.+++
T Consensus 80 ---------------------------------------------------------------------------g~~p~ 84 (213)
T cd00672 80 ---------------------------------------------------------------------------GLSWK 84 (213)
T ss_pred ---------------------------------------------------------------------------CCCHH
Confidence 55555
Q ss_pred HHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhh
Q psy13464 193 TVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISL 272 (515)
Q Consensus 193 ~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l 272 (515)
+++
T Consensus 85 e~~----------------------------------------------------------------------------- 87 (213)
T cd00672 85 EVA----------------------------------------------------------------------------- 87 (213)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 433
Q ss_pred hhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcE
Q psy13464 273 PLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSV 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsV 352 (515)
++ |+++|+++|++|||++||.|+||
T Consensus 88 -~~--------------------------~~~~f~~~~~~l~i~~~d~~~rt---------------------------- 112 (213)
T cd00672 88 -DY--------------------------YTKEFFEDMKALNVLPPDVVPRV---------------------------- 112 (213)
T ss_pred -HH--------------------------HHHHHHHHHHHcCCCCCCcceee----------------------------
Confidence 33 89999999999999999999999
Q ss_pred EEeccCCCCcceecccCCCCCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeeccc
Q psy13464 353 YFDVDSFPHYFKLWGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGID 432 (515)
Q Consensus 353 YFDv~~~~~YG~Ls~~~~~~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~D 432 (515)
||||||||+.++||.++|||+||+|
T Consensus 113 -------------------------------------------------------Wh~ec~am~~~~lg~~~dih~~G~D 137 (213)
T cd00672 113 -------------------------------------------------------WHIECSAMAMKYLGETFDIHGGGVD 137 (213)
T ss_pred -------------------------------------------------------hhHHHHHHHHHHcCCCccEEeecCC
Confidence 9999999999999999999999999
Q ss_pred ccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccCC
Q psy13464 433 LKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 433 L~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
|+|||||||+||++|++|+ +++++|+|+|+|.++|+|||||+||+|+++++++. ||+|++|-
T Consensus 138 l~fpH~~~~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~-~~~da~R~ 199 (213)
T cd00672 138 LIFPHHENEIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKK-YDPEVLRL 199 (213)
T ss_pred CCcChHHHHHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHH-cCHHHHHH
Confidence 9999999999999999986 89999999999999999999999999999999999 99997764
No 14
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=5.7e-46 Score=375.15 Aligned_cols=181 Identities=16% Similarity=0.127 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHcCCCCCc--cccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCCCcceecccCC----CCC
Q psy13464 302 YELEYFESMEKFGVLPPT--RATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWGRNE----NIT 373 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD--~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~~YG~Ls~~~~----~~t 373 (515)
|+++|+++|++|||.. | .+-+++ +|++.+++++++|.++|++|+ .++.||++...+-+|+.|+.+.. ...
T Consensus 84 ~~~~~~~~l~~lgI~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~-~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~ 161 (312)
T cd00668 84 MSGEHKEDFRRLGISY-DWSDEYITTEPEYSKAVELIFSRLYEKGLIYR-GTHPVRITEQWFFDMPKFKEKLLKALRRGK 161 (312)
T ss_pred HHHHHHHHHHHhCccc-cCCCCeECCCHHHHHHHHHHHHHHHHCCCEEe-ecceeEeeeeEEEEcHHHHHHHHHHHhcCC
Confidence 9999999999999997 5 444444 699999999999999999998 78899999998888998876543 111
Q ss_pred --ccCcc-------cCccCccccccccCCCCcccCCCCCCCCCccccc----ch---hhhhhcCC--------CceEeee
Q psy13464 374 --QHAVK-------RSPFDFALWKSAKPGEPWYESAWGKGRPGWHIEC----SA---MASHFFGG--------QVDLHTG 429 (515)
Q Consensus 374 --~~~~K-------r~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiEC----SA---M~~~~lG~--------~~DIH~G 429 (515)
....| +++.||+|++ +++||.++||||||| ++ |+..+++. +.|||++
T Consensus 162 ~~p~~~~~~~~~~l~~~~d~~isR---------~~~WG~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~ 232 (312)
T cd00668 162 IVPEHVKNRMEAWLESLLDWAISR---------QRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLI 232 (312)
T ss_pred cCChHHHHHHHHHHhCCCCeEEec---------cCCCCCcCCcccccchhhccHHHHHHcCCCccchhhhhcCCceEEEE
Confidence 12233 3667888754 568999999999999 64 55555554 6899999
Q ss_pred cccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCC-CcccccccceeccccccccccCccccC
Q psy13464 430 GIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTD-GTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 430 G~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G-~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
|.|++||||++++||++++.+..++.++|+| |+|.++| +|||||+||+|+++++++. ||+|+.|
T Consensus 233 G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~v~~~d~~~~-~~~da~R 297 (312)
T cd00668 233 GKDILRGWANFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNVIDPSDVVEK-YGADALR 297 (312)
T ss_pred ecchhhhHHHHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCcCCHHHHHHH-cCcHHHH
Confidence 9999999999999999998764467799999 9999998 9999999999999999999 9999755
No 15
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.9e-44 Score=382.77 Aligned_cols=254 Identities=17% Similarity=0.195 Sum_probs=209.1
Q ss_pred eeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHhh
Q psy13464 53 LKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKIL 132 (515)
Q Consensus 53 v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~ 132 (515)
.-+.+++||||+.+||||+|+||.+|+++|||+ +.|++|.||+|+||+|+||+.+|+++
T Consensus 3 ~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r-~~G~~v~~v~g~dd~g~~i~~~a~~~-------------------- 61 (511)
T PRK11893 3 FYITTPIYYPNGKPHIGHAYTTLAADVLARFKR-LRGYDVFFLTGTDEHGQKIQRKAEEA-------------------- 61 (511)
T ss_pred EEEecCCCCCCCCcccchhHHHHHHHHHHHHHH-hcCCcEEecCCCCCCChHHHHHHHHc--------------------
Confidence 456789999999999999999999999999999 89999999999999999999988775
Q ss_pred hccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHHH
Q psy13464 133 HQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVV 212 (515)
Q Consensus 133 ~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 212 (515)
|.++.++
T Consensus 62 -------------------------------------------------------g~~~~~~------------------ 68 (511)
T PRK11893 62 -------------------------------------------------------GISPQEL------------------ 68 (511)
T ss_pred -------------------------------------------------------CCCHHHH------------------
Confidence 4444322
Q ss_pred HHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccch
Q psy13464 213 RKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTV 292 (515)
Q Consensus 213 ~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 292 (515)
+++
T Consensus 69 ------------------------------------------------------------~~~----------------- 71 (511)
T PRK11893 69 ------------------------------------------------------------ADR----------------- 71 (511)
T ss_pred ------------------------------------------------------------HHH-----------------
Confidence 234
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCCCCcccccccc--cHHHHHHHHHHHHHCCCeeeecCCcEEEeccC--C---------
Q psy13464 293 VFEFLFNFRYELEYFESMEKFGVLPPTRATRVSE--FIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS--F--------- 359 (515)
Q Consensus 293 ~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTe--hI~~iie~I~kLidnG~AYe~kdGsVYFDv~~--~--------- 359 (515)
|+++|.++|++|||. +|.|+|+++ |++.+++++++|.++|++|+ ++++||||++. +
T Consensus 72 ---------~~~~~~~~l~~l~I~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~-~~~~~~~~~~~~~~l~~~~l~~~ 140 (511)
T PRK11893 72 ---------NSAAFKRLWEALNIS-YDDFIRTTDPRHKEAVQEIFQRLLANGDIYL-GKYEGWYCVRCEEFYTESELIED 140 (511)
T ss_pred ---------HHHHHHHHHHHhCCC-cCCceeCCCHHHHHHHHHHHHHHHHCCCEEE-eeeeeeccccccccCCHHHhcCC
Confidence 999999999999999 589999997 99999999999999999998 78999999986 2
Q ss_pred -----------------CCcceecccCC-------C----CCccC--------cccCccCccccc-ccc-----CCCC--
Q psy13464 360 -----------------PHYFKLWGRNE-------N----ITQHA--------VKRSPFDFALWK-SAK-----PGEP-- 395 (515)
Q Consensus 360 -----------------~~YG~Ls~~~~-------~----~t~~~--------~Kr~~~DFaLWK-~~~-----~gep-- 395 (515)
..|++|+.... . ..... -+++..||++|+ ... |+++
T Consensus 141 ~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~ 220 (511)
T PRK11893 141 GYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKH 220 (511)
T ss_pred CCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCc
Confidence 12777766321 1 11111 245688999999 433 5654
Q ss_pred ---cc-cCCCC----CCCCCcccccchh---hhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee
Q psy13464 396 ---WY-ESAWG----KGRPGWHIECSAM---ASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464 (515)
Q Consensus 396 ---~W-~SpwG----~GRPGWHiECSAM---~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v 464 (515)
.| ++.+| .|+|+ ||++| ..+++ +.|+|++|.|++||||++++||+.|+ + .+++++|+|+|||
T Consensus 221 ~~~vWfda~~~y~s~~~~p~---~~~~~~~~~~~~~--~~D~~~~G~D~~~~h~~~~~a~~~a~-~-~~~p~~~~~~g~v 293 (511)
T PRK11893 221 VIYVWFDALTNYLTALGYPD---DEELLAELFNKYW--PADVHLIGKDILRFHAVYWPAFLMAA-G-LPLPKRVFAHGFL 293 (511)
T ss_pred eEEEEecCcHHHHhHhcccc---ccccchhHHHhcC--CCcceEecccccccchhHHHHHHHhC-C-CCCCCEEEeeccE
Confidence 46 33222 35677 99998 34556 57999999999999999999999998 5 3577999999999
Q ss_pred eeCCCcccccccceeccccccccccCccccCC
Q psy13464 465 RGTDGTRRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 465 ~v~G~KMSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
.++|+|||||+||+|++.++++. ||+|++|-
T Consensus 294 ~~~G~KMSKS~GN~i~~~dll~~-~g~DalR~ 324 (511)
T PRK11893 294 TLDGEKMSKSLGNVIDPFDLVDE-YGVDAVRY 324 (511)
T ss_pred EECCeeecccCCcEEcHHHHHHH-cCcHHHHH
Confidence 99999999999999999999999 99997653
No 16
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=1.1e-39 Score=331.25 Aligned_cols=253 Identities=15% Similarity=0.100 Sum_probs=206.0
Q ss_pred EcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHhhhccc
Q psy13464 57 ACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKV 136 (515)
Q Consensus 57 ~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~ 136 (515)
+..|+||+.+||||+|+++.+|+++||+| +.|++|.||+|+||+|+||+.+|+++
T Consensus 6 ~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r-~~G~~V~~~~g~Dd~g~~i~~~a~~~------------------------ 60 (319)
T cd00814 6 TALPYVNGVPHLGHLYGTVLADVFARYQR-LRGYDVLFVTGTDEHGTKIEQKAEEE------------------------ 60 (319)
T ss_pred eCCCCCCCCcchhhHHHHHHHHHHHHHHH-hCCCcccccCccCCCCcHHHHHHHHc------------------------
Confidence 34588889999999999999999999999 89999999999999999999999886
Q ss_pred cccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHHHHHHH
Q psy13464 137 VGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLA 216 (515)
Q Consensus 137 ~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~ 216 (515)
+.++++++
T Consensus 61 ---------------------------------------------------g~~~~e~~--------------------- 68 (319)
T cd00814 61 ---------------------------------------------------GVTPQELC--------------------- 68 (319)
T ss_pred ---------------------------------------------------CCCHHHHH---------------------
Confidence 44454332
Q ss_pred HHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccchhhhh
Q psy13464 217 IDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEF 296 (515)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 296 (515)
+.
T Consensus 69 ---------------------------------------------------------~~--------------------- 70 (319)
T cd00814 69 ---------------------------------------------------------DK--------------------- 70 (319)
T ss_pred ---------------------------------------------------------HH---------------------
Confidence 33
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCcccccccc--cHHHHHHHHHHHHHCCCeeeecC-------------------CcEEEe
Q psy13464 297 LFNFRYELEYFESMEKFGVLPPTRATRVSE--FIPHIQSFIQTLLDTKQAYIGSD-------------------HSVYFD 355 (515)
Q Consensus 297 ~~~~~y~~~F~edm~aLNI~~PD~~pRaTe--hI~~iie~I~kLidnG~AYe~kd-------------------GsVYFD 355 (515)
+++.|.+++++|||.+ |.++|+++ |++.+++++++|.++|++|+ ++ .++||+
T Consensus 71 -----~~~~~~~~l~~LgI~~-D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~-~~~~~~yc~~~~~~l~e~~~~~~~ff~ 143 (319)
T cd00814 71 -----YHEIFKDLFKWLNISF-DYFIRTTSPRHKEIVQEFFKKLYENGYIYE-GEYEGLYCVSCERFLPEWREEEHYFFR 143 (319)
T ss_pred -----HHHHHHHHHHHcCCcC-CCCeeCCCHHHHHHHHHHHHHHHHCCCEEe-eeeeeeECCCCCcEeeEEEeeeeEEEE
Confidence 8999999999999985 99999987 99999999999999999997 44 577888
Q ss_pred ccCCCCcce-ecccCC--CCC----------ccCccc---CccCccccccccCCCC-----cc-cCCCC----CCCCCcc
Q psy13464 356 VDSFPHYFK-LWGRNE--NIT----------QHAVKR---SPFDFALWKSAKPGEP-----WY-ESAWG----KGRPGWH 409 (515)
Q Consensus 356 v~~~~~YG~-Ls~~~~--~~t----------~~~~Kr---~~~DFaLWK~~~~gep-----~W-~SpwG----~GRPGWH 409 (515)
++++.++.. ..+.+. ..+ .....+ -.+|++.|....|+++ .| ++++| .|+++|+
T Consensus 144 l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~ 223 (319)
T cd00814 144 LSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEE 223 (319)
T ss_pred hHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHHHHHHHccccccc
Confidence 887665444 222111 000 011122 3466667998888876 37 78887 8999999
Q ss_pred cccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceecccccccccc
Q psy13464 410 IECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGY 489 (515)
Q Consensus 410 iECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y 489 (515)
.+|+.+- ..+.+.+||++|.|++|+|+.++.|+..++ | .++++.++++|+++++|+|||||+||+|++.++++. |
T Consensus 224 ~~~~~~~--~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~-~-~~~~~~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~-~ 298 (319)
T cd00814 224 WGNSWWW--KDGWPELVHFIGKDIIRFHAIYWPAMLLGA-G-LPLPTRIVAHGYLTVEGKKMSKSRGNVVDPDDLLER-Y 298 (319)
T ss_pred ccchhhh--hcCCCceEEEEeechhhhhHHHHHHHHHhC-C-CCCCcEeeeeeeEEECCeeecccCCcccCHHHHHHH-c
Confidence 9987332 245678999999999999999999998876 5 467889999999999999999999999999999999 9
Q ss_pred CccccCC
Q psy13464 490 TRDTCAG 496 (515)
Q Consensus 490 ~~D~~~~ 496 (515)
|+|..|-
T Consensus 299 ~~d~~R~ 305 (319)
T cd00814 299 GADALRY 305 (319)
T ss_pred CchHHHH
Confidence 9997664
No 17
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=2.3e-35 Score=299.72 Aligned_cols=247 Identities=15% Similarity=0.114 Sum_probs=190.5
Q ss_pred CccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHhhhcccccc
Q psy13464 60 PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGS 139 (515)
Q Consensus 60 ptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ 139 (515)
|++++.+||||+|++|.+|+++||++ +.|++|.+++|+||+|+||+.+|+++
T Consensus 9 Py~ng~~HiGH~~~~v~~Dv~~R~lr-~~G~~V~~v~g~Dd~g~~i~~~a~~~--------------------------- 60 (314)
T cd00812 9 PYPSGALHVGHVRTYTIGDIIARYKR-MQGYNVLFPMGFDAFGLPAENAAIKI--------------------------- 60 (314)
T ss_pred CCCCCCccccchHHHHHHHHHHHHHH-HcCCCcCCCCCcCCCCCHHHHHHHHc---------------------------
Confidence 88999999999999999999999999 89999999999999999999999876
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHHHHHHHHHH
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDL 219 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l 219 (515)
+.++++.
T Consensus 61 ------------------------------------------------g~~~~e~------------------------- 67 (314)
T cd00812 61 ------------------------------------------------GRDPEDW------------------------- 67 (314)
T ss_pred ------------------------------------------------CCCHHHH-------------------------
Confidence 3334322
Q ss_pred HhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccchhhhhhhh
Q psy13464 220 KKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFN 299 (515)
Q Consensus 220 ~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (515)
+++
T Consensus 68 -----------------------------------------------------~~~------------------------ 70 (314)
T cd00812 68 -----------------------------------------------------TEY------------------------ 70 (314)
T ss_pred -----------------------------------------------------HHH------------------------
Confidence 234
Q ss_pred HHHHHHHHHHHHHcCCCCCccccccc----ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCCCccee--cccCCC--
Q psy13464 300 FRYELEYFESMEKFGVLPPTRATRVS----EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKL--WGRNEN-- 371 (515)
Q Consensus 300 ~~y~~~F~edm~aLNI~~PD~~pRaT----ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~~YG~L--s~~~~~-- 371 (515)
|.+.|.++|++|||.. |..++.+ +|++.+++++.+|.++|++|+ .++.||||+.....|-+| +.....
T Consensus 71 --~~~~~~~~~~~lgi~~-d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~-~~~~v~~~~~~~~~f~~l~~~~~~~~l~ 146 (314)
T cd00812 71 --NIKKMKEQLKRMGFSY-DWRREFTTCDPEYYKFTQWLFLKLYEKGLAYK-KEAPVNWCKLLDQWFLKYSETEWKEKLL 146 (314)
T ss_pred --HHHHHHHHHHHhccce-ecccccccCCHHHHHHHHHHHHHHHHCCCEEe-cCceeeeeCccceEEEEcCcHHHHHHHH
Confidence 9999999999999975 7544444 366666777779999999998 789999998876677777 332221
Q ss_pred --CCc-c--C-cccCccCccccccccCCCCcccCCCCCCCC-Ccccccchhhh----hhcC-------------------
Q psy13464 372 --ITQ-H--A-VKRSPFDFALWKSAKPGEPWYESAWGKGRP-GWHIECSAMAS----HFFG------------------- 421 (515)
Q Consensus 372 --~t~-~--~-~Kr~~~DFaLWK~~~~gep~W~SpwG~GRP-GWHiECSAM~~----~~lG------------------- 421 (515)
+.. . + ..+ ..+..|.. .+.+..||--.| +|+|+|...+. .|+.
T Consensus 147 ~~l~~~~~~p~~~~--~~~~~~l~-----isR~~~wGipvP~~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~ 219 (314)
T cd00812 147 KDLEKLDGWPEEVR--AMQENWIG-----CSRQRYWGTPIPWTDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEF 219 (314)
T ss_pred HHHHhcCcCCHHHH--HHHHHHhe-----eeeecCCcCCcCcccccccccccHHHHHHHHhcccccCcchhhhhhhHHHH
Confidence 100 0 0 011 12333432 445667887778 69999976554 2221
Q ss_pred ---CCceEeeecccccCCccchhHHHHhhhcCCC----CcccEEEEeeeeeeCCCcccccccceeccccccccccCcccc
Q psy13464 422 ---GQVDLHTGGIDLKFPHHENEEAQSCAFHNQS----QWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTC 494 (515)
Q Consensus 422 ---~~~DIH~GG~DL~FPHHENEiAQsea~~g~~----~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~ 494 (515)
.+.|||++|.|++++|+.+.+.+..++.+.. +++...+++|+|+++|+|||||+||+|++++++++ ||+|+.
T Consensus 220 ~~w~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~~~g~KmSkS~Gn~v~~~dll~~-~~~Da~ 298 (314)
T cd00812 220 EYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVLLEGEKMSKSKGNVVTPDEAIKK-YGADAA 298 (314)
T ss_pred HHhCCCeeeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEecCccccCCcCCCCCCHHHHHHH-hCcHHH
Confidence 1479999999999999999998888887532 45555568899999999999999999999999999 999976
Q ss_pred CC
Q psy13464 495 AG 496 (515)
Q Consensus 495 ~~ 496 (515)
|=
T Consensus 299 R~ 300 (314)
T cd00812 299 RL 300 (314)
T ss_pred HH
Confidence 53
No 18
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.97 E-value=1.3e-30 Score=280.53 Aligned_cols=254 Identities=15% Similarity=0.135 Sum_probs=182.9
Q ss_pred EcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHhhhccc
Q psy13464 57 ACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKV 136 (515)
Q Consensus 57 ~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~ 136 (515)
+..|+|++.+||||+|+||.+|+++||+| +.|++|.||+|+||+|+||+.+|++.
T Consensus 5 ~~~P~~ng~lHiGH~~~~~~aDvl~R~~r-~~G~~V~~v~g~D~~g~~i~~~a~~~------------------------ 59 (530)
T TIGR00398 5 TALPYANGKPHLGHAYTTILADVYARYKR-LRGYEVLFVCGTDEHGTKIELKAEQE------------------------ 59 (530)
T ss_pred cCCCCCCCCcccchhHHHHHHHHHHHHHH-hcCCeEEEecccCCCCcHHHHHHHHc------------------------
Confidence 56899999999999999999999999999 89999999999999999999999875
Q ss_pred cccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHHHHHHH
Q psy13464 137 VGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLA 216 (515)
Q Consensus 137 ~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~ 216 (515)
+.++++++
T Consensus 60 ---------------------------------------------------g~~~~e~~--------------------- 67 (530)
T TIGR00398 60 ---------------------------------------------------GLTPKELV--------------------- 67 (530)
T ss_pred ---------------------------------------------------CCCHHHHH---------------------
Confidence 44444322
Q ss_pred HHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccchhhhh
Q psy13464 217 IDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEF 296 (515)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 296 (515)
..
T Consensus 68 ---------------------------------------------------------~~--------------------- 69 (530)
T TIGR00398 68 ---------------------------------------------------------DK--------------------- 69 (530)
T ss_pred ---------------------------------------------------------HH---------------------
Confidence 23
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCcccccccc--cHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC----Cc--------
Q psy13464 297 LFNFRYELEYFESMEKFGVLPPTRATRVSE--FIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP----HY-------- 362 (515)
Q Consensus 297 ~~~~~y~~~F~edm~aLNI~~PD~~pRaTe--hI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~----~Y-------- 362 (515)
|++.|.+++++|||. +|.++|+++ |++.+++++++|.++|++|+ +++.||||+..-. .|
T Consensus 70 -----~~~~~~~~l~~LgI~-~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~-~~~~v~~~~~~~~~l~~~~v~g~cp~c 142 (530)
T TIGR00398 70 -----YHEEFKDDWKWLNIS-FDRFIRTTDEEHKEIVQKIFQKLKENGYIYE-KEIKQLYCPECEMFLPDRYVEGTCPKC 142 (530)
T ss_pred -----HHHHHHHHHHHhCCC-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEE-eeeEEEecCCCCcCCchhhhcCCCCCC
Confidence 899999999999998 499999997 99999999999999999998 8899999987521 11
Q ss_pred ------ce--------------------ecccCC----------CCC------ccCcccCccCccccc--------cccC
Q psy13464 363 ------FK--------------------LWGRNE----------NIT------QHAVKRSPFDFALWK--------SAKP 392 (515)
Q Consensus 363 ------G~--------------------Ls~~~~----------~~t------~~~~Kr~~~DFaLWK--------~~~~ 392 (515)
|. .++... ++. ....++++ ++..|. .--.
T Consensus 143 ~~~~~~g~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~ 221 (530)
T TIGR00398 143 GSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNP-ESGSPASNVKNKAQNWLK 221 (530)
T ss_pred CCcccccchhhhccccCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCC-ccCCCcHHHHHHHHHHHh
Confidence 00 011111 000 00011110 111121 0000
Q ss_pred C-C----CcccCC-CCCCCCCcccc---------cchhh------------hhhcCCC---ceEeeecccccCCccchhH
Q psy13464 393 G-E----PWYESA-WGKGRPGWHIE---------CSAMA------------SHFFGGQ---VDLHTGGIDLKFPHHENEE 442 (515)
Q Consensus 393 g-e----p~W~Sp-wG~GRPGWHiE---------CSAM~------------~~~lG~~---~DIH~GG~DL~FPHHENEi 442 (515)
+ - .+.... ||---|+|-=. +.-++ .+++..+ -.+|..|.|.+|.|.-.+.
T Consensus 222 ~~l~d~~iSR~~~~WGipvP~~~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~ 301 (530)
T TIGR00398 222 GGLKDLAITRDLVYWGIPVPNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWP 301 (530)
T ss_pred CCCCCccccCcCCCCCeeCCCCCCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHH
Confidence 0 0 122334 76666666200 11111 1222111 1199999999999999999
Q ss_pred HHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccCC
Q psy13464 443 AQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 443 AQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
|...|+ |. ++++-.+.+|||+++|+|||||+||+|+++++++. ||+|++|-
T Consensus 302 a~l~~~-~~-~~~~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~-~g~D~lR~ 352 (530)
T TIGR00398 302 AMLMGL-GL-PLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLAR-FGADILRY 352 (530)
T ss_pred HHHHhC-CC-CCCCEEEeeccEEECCceecccCCceecHHHHHHH-cCchHHHH
Confidence 999887 53 56667777799999999999999999999999999 99998653
No 19
>PLN02224 methionine-tRNA ligase
Probab=99.97 E-value=3.6e-30 Score=283.05 Aligned_cols=245 Identities=15% Similarity=0.151 Sum_probs=178.7
Q ss_pred CccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHhhhcccccc
Q psy13464 60 PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGS 139 (515)
Q Consensus 60 ptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ 139 (515)
|+|++.+||||++++|.+|+++||+| +.|++|.|++|+||+++||..+|++.
T Consensus 78 pY~NG~~HiGHa~~~~~aDviaR~~r-~~G~~V~fv~G~DehG~kI~~~A~~~--------------------------- 129 (616)
T PLN02224 78 YYVNAPPHMGSAYTTIAADSIARFQR-LLGKKVIFITGTDEHGEKIATSAAAN--------------------------- 129 (616)
T ss_pred CCCCCCCchhccHHHHHHHHHHHHHH-hcCCceEEecCcCCcchHHHHHHHHc---------------------------
Confidence 47889999999999999999999999 99999999999999999999988775
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHHHHHHHHHH
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDL 219 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l 219 (515)
+.++.+++
T Consensus 130 ------------------------------------------------g~~p~e~~------------------------ 137 (616)
T PLN02224 130 ------------------------------------------------GRNPPEHC------------------------ 137 (616)
T ss_pred ------------------------------------------------CCChHHHH------------------------
Confidence 44444333
Q ss_pred HhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccchhhhhhhh
Q psy13464 220 KKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFN 299 (515)
Q Consensus 220 ~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (515)
+.
T Consensus 138 ------------------------------------------------------~~------------------------ 139 (616)
T PLN02224 138 ------------------------------------------------------DI------------------------ 139 (616)
T ss_pred ------------------------------------------------------HH------------------------
Confidence 33
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccccc--cHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCCCc--cee--------cc
Q psy13464 300 FRYELEYFESMEKFGVLPPTRATRVSE--FIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHY--FKL--------WG 367 (515)
Q Consensus 300 ~~y~~~F~edm~aLNI~~PD~~pRaTe--hI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~~Y--G~L--------s~ 367 (515)
|++.|.+.+++|||.+ |.|+|+|+ |.+.+++++.+|.++|++|+ .+..+|||++.-.-| ..| ++
T Consensus 140 --~~~~~~~~~~~l~I~~-D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~-~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~ 215 (616)
T PLN02224 140 --ISQSYRTLWKDLDIAY-DKFIRTTDPKHEAIVKEFYARVFANGDIYR-ADYEGLYCVNCEEYKDEKELLENNCCPVHQ 215 (616)
T ss_pred --HHHHHHHHHHHcCCCC-CcCeeCCCHHHHHHHHHHHHHHHHCCCEEE-eeeeeeecCCCCCCCCHHHHcCCCCCCCCC
Confidence 8899999999999975 99999996 99999999999999999998 788999998762211 111 11
Q ss_pred cCC----------CC-----------------------------------CccCcccCccCccccccccCCCC-----cc
Q psy13464 368 RNE----------NI-----------------------------------TQHAVKRSPFDFALWKSAKPGEP-----WY 397 (515)
Q Consensus 368 ~~~----------~~-----------------------------------t~~~~Kr~~~DFaLWK~~~~gep-----~W 397 (515)
... .+ .+....|++.+ |.-..|+++ .|
T Consensus 216 ~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~---WGIpvP~~~~~viYVW 292 (616)
T PLN02224 216 MPCVARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISRALVD---WGIPVPDDDKQTIYVW 292 (616)
T ss_pred CcceEEecceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccCCCCC---CceECCCCCCcEEEEe
Confidence 111 00 01111222112 443333332 11
Q ss_pred -cCCCC----CCCCCcccccchhhh-hhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcc
Q psy13464 398 -ESAWG----KGRPGWHIECSAMAS-HFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTR 471 (515)
Q Consensus 398 -~SpwG----~GRPGWHiECSAM~~-~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KM 471 (515)
|.+.| -|.+ -+....-. ..++.+.|+|++|.|++|+|+..+.|+..++ | .++++-++.+|||+++|+||
T Consensus 293 fDAl~~Yls~~~~~---~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~-g-~~~P~~i~~~g~l~~eG~KM 367 (616)
T PLN02224 293 FDALLGYISALTED---NKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSA-G-LELPKMVFGHGFLTKDGMKM 367 (616)
T ss_pred hhhHHHHHHHhccc---ccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHC-C-CCCCcEEEecccEecCCccc
Confidence 11111 1110 00000000 0113356899999999999999999998876 6 46887777779999999999
Q ss_pred cccccceeccccccccccCccccC
Q psy13464 472 RLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 472 Sks~Gnfit~~~li~~~y~~D~~~ 495 (515)
|||+||+|+|.++++. ||+|+.|
T Consensus 368 SKS~GN~i~p~e~l~~-ygaD~~R 390 (616)
T PLN02224 368 GKSLGNTLEPFELVQK-FGPDAVR 390 (616)
T ss_pred cccCCccCCHHHHHHH-cCcHHHH
Confidence 9999999999999999 9999765
No 20
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.97 E-value=8.7e-31 Score=273.00 Aligned_cols=191 Identities=16% Similarity=0.165 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHcCCCCCc--cccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCCCcc--eec---ccCC-
Q psy13464 301 RYELEYFESMEKFGVLPPT--RATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYF--KLW---GRNE- 370 (515)
Q Consensus 301 ~y~~~F~edm~aLNI~~PD--~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~~YG--~Ls---~~~~- 370 (515)
+|++.|.+++++|||.. | .+.+++ +|.+.+++++.+|.++|++|+ .+..||||+..-.-+. .++ +...
T Consensus 87 ~~~~~~~~~~~~lgi~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~-~~~~~~yc~~~~t~l~~~evc~~cg~~~~ 164 (382)
T cd00817 87 ESGGKIREQLKRLGASV-DWSREYFTMDPGLSRAVQEAFVRLYEKGLIYR-DNRLVNWCPKLRTAISDIEVCSRSGDVIE 164 (382)
T ss_pred HHHHHHHHHHHHhCcee-ecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe-eeeEEeecCCcCCCCCcchhcccCCCeEE
Confidence 39999999999999985 5 677777 499999999999999999998 7889999988632111 011 0000
Q ss_pred ---------CCC------ccCcccCccCc---------cccccccCC-CCcccCCCCCCCCCcccc-c------------
Q psy13464 371 ---------NIT------QHAVKRSPFDF---------ALWKSAKPG-EPWYESAWGKGRPGWHIE-C------------ 412 (515)
Q Consensus 371 ---------~~t------~~~~Kr~~~DF---------aLWK~~~~g-ep~W~SpwG~GRPGWHiE-C------------ 412 (515)
+++ .+..+++|..+ .-|=...++ -.+....||---|-|.-+ |
T Consensus 165 ~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~ 244 (382)
T cd00817 165 PLLKPQWFVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEA 244 (382)
T ss_pred EEecCeeEEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEecchhHHH
Confidence 010 01112221110 000000000 013345576666766532 1
Q ss_pred ------------------------------chhhhhhcC-----------CCceEeeecccccCCccchhHHHHhhhcCC
Q psy13464 413 ------------------------------SAMASHFFG-----------GQVDLHTGGIDLKFPHHENEEAQSCAFHNQ 451 (515)
Q Consensus 413 ------------------------------SAM~~~~lG-----------~~~DIH~GG~DL~FPHHENEiAQsea~~g~ 451 (515)
+.+-...++ .+.|||++|.|++++||.++++++.++.|.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g~ 324 (382)
T cd00817 245 IDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTGK 324 (382)
T ss_pred HHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhCC
Confidence 000000111 246999999999999999999999999886
Q ss_pred CCcccEEEEeeeee-eCCCcccccccceeccccccccccCccccC
Q psy13464 452 SQWVNYWLHTGHLR-GTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 452 ~~~a~yWlH~G~v~-v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
.++.++|+| |+|. .+|+|||||+||+|++++++++ ||+|++|
T Consensus 325 ~p~~~v~~h-g~v~~~~g~KMSKS~Gn~v~~~dll~~-~g~Da~R 367 (382)
T cd00817 325 LPFKEVYLH-GLVRDEDGRKMSKSLGNVIDPLDVIDG-YGADALR 367 (382)
T ss_pred CchHHeEee-eeEECCCCCCccccCCCCCCHHHHHHh-cCcHHHH
Confidence 566788999 6665 8999999999999999999999 9999765
No 21
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=2.7e-30 Score=279.60 Aligned_cols=250 Identities=14% Similarity=0.042 Sum_probs=180.4
Q ss_pred eEEEcCC--ccCCCCCCcchhhH-HHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHH
Q psy13464 54 KWYACGP--TVYDSPHIGHAVCN-VKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFK 130 (515)
Q Consensus 54 ~~y~cgp--tvyd~~HiGhaR~~-v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~ 130 (515)
++|+|.| |||+.+||||++++ |.+|+++||+| +.|++|.|++|+||+|+||+.+|+++
T Consensus 4 ~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r-~~G~~v~~~~g~d~~g~~i~~~a~~~------------------ 64 (556)
T PRK12268 4 RILITSAWPYANGPLHLGHLAGSGLPADVFARYQR-LKGNEVLFVSGSDEHGTPIELAAKKE------------------ 64 (556)
T ss_pred cEEEecCCCCCCCCccccccccchhHHHHHHHHHH-hcCCceEecCcCCCcccHHHHHHHHc------------------
Confidence 4678885 55599999999997 99999999999 89999999999999999999999875
Q ss_pred hhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHH
Q psy13464 131 ILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQK 210 (515)
Q Consensus 131 ~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~ 210 (515)
+.++++++
T Consensus 65 ---------------------------------------------------------g~~~~~~~--------------- 72 (556)
T PRK12268 65 ---------------------------------------------------------GVTPQELA--------------- 72 (556)
T ss_pred ---------------------------------------------------------CCCHHHHH---------------
Confidence 44444322
Q ss_pred HHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCcccc
Q psy13464 211 VVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLR 290 (515)
Q Consensus 211 ~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 290 (515)
++
T Consensus 73 ---------------------------------------------------------------~~--------------- 74 (556)
T PRK12268 73 ---------------------------------------------------------------DK--------------- 74 (556)
T ss_pred ---------------------------------------------------------------HH---------------
Confidence 33
Q ss_pred chhhhhhhhHHHHHHHHHHHHHcCCCCCccccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC----C---
Q psy13464 291 TVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP----H--- 361 (515)
Q Consensus 291 ~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~----~--- 361 (515)
|++.|.+++++|||. +|.|+|+| +|++.+++++++|.++|++|+ .++.||||+..-. .
T Consensus 75 -----------~~~~~~~~~~~l~i~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~-~~~~~~~~~~~~~~l~~~~v~ 141 (556)
T PRK12268 75 -----------YHEEHKEDFKKLGIS-YDLFTRTTSPNHHEVVQEFFLKLYENGYIYK-KTIEQAYCPSDGRFLPDRYVE 141 (556)
T ss_pred -----------HHHHHHHHHHHcCCc-CCCCcCCCCHHHHHHHHHHHHHHHHCCCeEE-eeeEEEecCCCCcCcCcccee
Confidence 899999999999997 59999999 899999999999999999998 7899999986421 1
Q ss_pred -----------ccee--------------------cccCC----------CCC------ccCccc---------------
Q psy13464 362 -----------YFKL--------------------WGRNE----------NIT------QHAVKR--------------- 379 (515)
Q Consensus 362 -----------YG~L--------------------s~~~~----------~~t------~~~~Kr--------------- 379 (515)
||.. ++... +++ ....++
T Consensus 142 g~cp~c~~~~~~G~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~ 221 (556)
T PRK12268 142 GTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNW 221 (556)
T ss_pred ccCCCCCCcccCCchhhhccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 2311 11111 000 000000
Q ss_pred ---CccCccccccccCCCCcccCCCCCCCCCccccc------------------chhh---------hhhc--CCCceEe
Q psy13464 380 ---SPFDFALWKSAKPGEPWYESAWGKGRPGWHIEC------------------SAMA---------SHFF--GGQVDLH 427 (515)
Q Consensus 380 ---~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiEC------------------SAM~---------~~~l--G~~~DIH 427 (515)
+-.| |-- +....||---| |.=.. .... .+++ ...-++|
T Consensus 222 l~~~l~D---w~I------SR~~~WGipiP-~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~ 291 (556)
T PRK12268 222 LKEGLKP---RAI------TRDLDWGIPVP-WPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYY 291 (556)
T ss_pred HhCCCCC---cCc------eeeCCCCeeCC-CCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEE
Confidence 0001 211 12233555555 32111 0000 1122 1234699
Q ss_pred eecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccCC
Q psy13464 428 TGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 428 ~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
+-|.|+++.|.-...|...+.....++++-.+.+|||.++|+|||||+||+|+|++++++ ||+|+.|-
T Consensus 292 ~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~~-yGaDalR~ 359 (556)
T PRK12268 292 FIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALER-YPPDYLRY 359 (556)
T ss_pred EEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEEECCeeeccCCCcccCHHHHHHH-cCcHHHHH
Confidence 999999998987888888777321245667777899999999999999999999999999 99997653
No 22
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=3.3e-30 Score=277.44 Aligned_cols=228 Identities=20% Similarity=0.135 Sum_probs=183.3
Q ss_pred CCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhH
Q psy13464 49 NKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLI 128 (515)
Q Consensus 49 ~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~ 128 (515)
.+++|.++.|||+|++.+||||+|++|..|+++|+|+ +.|++|.++.+++|+|++|...|++..
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr-~~G~~V~~~~~i~D~G~qi~~~a~~~~--------------- 172 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILE-FAGYDVTREYYVNDAGTQIGMLIASLE--------------- 172 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHH-HcCCcEEEEeeeCCccHHHHHHHHHHH---------------
Confidence 4578999999999999999999999999999999999 899999999999999999998877651
Q ss_pred HHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhh
Q psy13464 129 FKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILH 208 (515)
Q Consensus 129 ~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~ 208 (515)
..++.
T Consensus 173 ------------------------------------------------------------~~~~~--------------- 177 (507)
T PRK01611 173 ------------------------------------------------------------LLWRK--------------- 177 (507)
T ss_pred ------------------------------------------------------------HHHHH---------------
Confidence 00111
Q ss_pred HHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCcc
Q psy13464 209 QKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLT 288 (515)
Q Consensus 209 ~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 288 (515)
+...
T Consensus 178 ---------------------------------------------------------------~~~~------------- 181 (507)
T PRK01611 178 ---------------------------------------------------------------AVDI------------- 181 (507)
T ss_pred ---------------------------------------------------------------HHHH-------------
Confidence 1123
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHcCCCCCccccccccc--HHHHHHHHHHHHHCCCee-eecCCcEEEeccCCCCccee
Q psy13464 289 LRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEF--IPHIQSFIQTLLDTKQAY-IGSDHSVYFDVDSFPHYFKL 365 (515)
Q Consensus 289 ~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTeh--I~~iie~I~kLidnG~AY-e~kdGsVYFDv~~~~~YG~L 365 (515)
+.+.|.+++++|||.+ |.++++++. .+.+++++++|.++|++| + ++|.+||+++++.++
T Consensus 182 -------------~~~~~~~~l~~LgI~~-D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~-~~Ga~~~~~~~~~~~--- 243 (507)
T PRK01611 182 -------------SLDEIKEDLDRLGVHF-DVWFSESELYYNGKVDEVVEDLKEKGLLYVE-SDGALWVRLTEFGDD--- 243 (507)
T ss_pred -------------HHHHHHHHHHHcCCee-eEEeecCcchhcchHHHHHHHHHHCCCEEEe-eCCcEEEEchhhCCC---
Confidence 8899999999999997 989999964 569999999999999999 7 899999998765421
Q ss_pred cccCCCCCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHH
Q psy13464 366 WGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQS 445 (515)
Q Consensus 366 s~~~~~~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQs 445 (515)
-|++|||. .|.+.|.++ .++||++|... ++.-++|++.+.++-|+++. ++.
T Consensus 244 ----------------~~~vl~ks--dG~~~Y~t~----Dia~~~~k~~~----~d~~i~V~g~~q~~hf~~~~---~~~ 294 (507)
T PRK01611 244 ----------------KDRVLIKS--DGTYTYFTR----DIAYHLYKFER----FDRVIYVVGADHHGHFKRLK---AAL 294 (507)
T ss_pred ----------------CCeEEEEC--CCCccchHH----HHHHHHHHHhh----cCEEEEEECCChHHHHHHHH---HHH
Confidence 27778875 455555444 57778777744 56678899888888999983 666
Q ss_pred hhhcCCCCc-ccEEEE--eeeeee-CCCcccccccceeccccccccccCc
Q psy13464 446 CAFHNQSQW-VNYWLH--TGHLRG-TDGTRRLRAARFITNLSGSTIGYTR 491 (515)
Q Consensus 446 ea~~g~~~~-a~yWlH--~G~v~v-~G~KMSks~Gnfit~~~li~~~y~~ 491 (515)
+++ |..+. .+.++| .|+|.- +|+|||||+||+|+++|+++++||+
T Consensus 295 ~~l-g~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~ 343 (507)
T PRK01611 295 KAL-GYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGR 343 (507)
T ss_pred HHc-CCCcccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHH
Confidence 665 64322 356888 455544 4679999999999999999999998
No 23
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=1.3e-29 Score=280.97 Aligned_cols=242 Identities=15% Similarity=0.093 Sum_probs=177.7
Q ss_pred CccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHhhhcccccc
Q psy13464 60 PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGS 139 (515)
Q Consensus 60 ptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ 139 (515)
|+|++.+||||+|+||.+|+++||+| +.|++|.|++|.+|+++||+.+|++.
T Consensus 11 py~ng~~HiGH~~~~l~aDv~aR~~r-~~G~~V~~~~g~D~hG~~i~~~A~~~--------------------------- 62 (673)
T PRK00133 11 PYANGPIHLGHLVEYIQADIWVRYQR-MRGHEVLFVCADDAHGTPIMLKAEKE--------------------------- 62 (673)
T ss_pred CCCCCcccccchHHHHHHHHHHHHHH-hcCCeeEEeCccCCCChHHHHHHHHc---------------------------
Confidence 58999999999999999999999999 89999999999999999999999886
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHHHHHHHHHH
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDL 219 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l 219 (515)
+.++++++
T Consensus 63 ------------------------------------------------g~~p~e~~------------------------ 70 (673)
T PRK00133 63 ------------------------------------------------GITPEELI------------------------ 70 (673)
T ss_pred ------------------------------------------------CCCHHHHH------------------------
Confidence 55555332
Q ss_pred HhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccchhhhhhhh
Q psy13464 220 KKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFN 299 (515)
Q Consensus 220 ~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (515)
.+
T Consensus 71 ------------------------------------------------------~~------------------------ 72 (673)
T PRK00133 71 ------------------------------------------------------AR------------------------ 72 (673)
T ss_pred ------------------------------------------------------HH------------------------
Confidence 33
Q ss_pred HHHHHHHHHHHHHcCCCCCccccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC-----------------
Q psy13464 300 FRYELEYFESMEKFGVLPPTRATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP----------------- 360 (515)
Q Consensus 300 ~~y~~~F~edm~aLNI~~PD~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~----------------- 360 (515)
|++.|.+++++|||.. |.|+|+| +|++.+++++++|+++|++|+ .++.||||+..-.
T Consensus 73 --~~~~~~~~~~~l~i~~-d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~-~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~ 148 (673)
T PRK00133 73 --YHAEHKRDFAGFGISF-DNYGSTHSEENRELAQEIYLKLKENGYIYE-KTIEQLYDPEKGMFLPDRFVKGTCPKCGAE 148 (673)
T ss_pred --HHHHHHHHHHHhCCCC-CCCccCCcHHHHHHHHHHHHHHHHCCCEEE-eeeEEEEeCCCCCCccchheecccCCCCCc
Confidence 9999999999999995 8999999 599999999999999999998 7899999988521
Q ss_pred -Cccee--------------------cccCC----------CCC---------------------------------ccC
Q psy13464 361 -HYFKL--------------------WGRNE----------NIT---------------------------------QHA 376 (515)
Q Consensus 361 -~YG~L--------------------s~~~~----------~~t---------------------------------~~~ 376 (515)
.+|-. ++... .+. +-.
T Consensus 149 d~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ 228 (673)
T PRK00133 149 DQYGDNCEVCGATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGELQPNVANKMKEWLEEGLQDWD 228 (673)
T ss_pred ccCCchhhhccccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCcccc
Confidence 12310 11111 000 000
Q ss_pred cccCccCcccc-ccccCCCC-----cc-cCCCCCCCCCcccccc---------hhhhhhcC-C--CceEeeecccccCCc
Q psy13464 377 VKRSPFDFALW-KSAKPGEP-----WY-ESAWGKGRPGWHIECS---------AMASHFFG-G--QVDLHTGGIDLKFPH 437 (515)
Q Consensus 377 ~Kr~~~DFaLW-K~~~~gep-----~W-~SpwG~GRPGWHiECS---------AM~~~~lG-~--~~DIH~GG~DL~FPH 437 (515)
..|+ ++ | --.-||++ .| |.++ +.|.++ ..-.+++. . .-.+|..|.|.++.|
T Consensus 229 ISR~-~~---W~GipvP~~~~~~iyVW~dal~------~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH 298 (673)
T PRK00133 229 ISRD-AP---YFGFEIPGAPGKVFYVWLDAPI------GYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFH 298 (673)
T ss_pred eeee-CC---ccceECCCCCCeEEEEcccchh------hhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHH
Confidence 1111 11 3 32233221 11 1121 111111 01123441 1 244999999999999
Q ss_pred cchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccCC
Q psy13464 438 HENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 438 HENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
.-.+.|...++ |. ++++-.+-+|||+++|+|||||+||+|+|.++++. ||+|+.|-
T Consensus 299 ~i~wpa~l~a~-g~-~lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie~-ygaDalR~ 354 (673)
T PRK00133 299 TLFWPAMLEGA-GY-RLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDH-LDPDYLRY 354 (673)
T ss_pred HHHHHHHHHhC-CC-CCCCEEeeeccEEecCCcccccCCcccCHHHHHHH-cCchHHHH
Confidence 99999999986 64 56655555599999999999999999999999999 99997663
No 24
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=1.7e-29 Score=278.70 Aligned_cols=254 Identities=18% Similarity=0.199 Sum_probs=183.1
Q ss_pred eEEEcCCccC--CCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHh
Q psy13464 54 KWYACGPTVY--DSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKI 131 (515)
Q Consensus 54 ~~y~cgptvy--d~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~ 131 (515)
++|+|.|.+| +.+||||+|+||.+|+++||+| +.|++|.|++|+||+|+||..+|+++
T Consensus 5 ~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r-~~G~~v~~~~g~D~~g~~i~~~A~~~------------------- 64 (648)
T PRK12267 5 TFYITTPIYYPNGKPHIGHAYTTIAADALARYKR-LQGYDVFFLTGTDEHGQKIQQAAEKA------------------- 64 (648)
T ss_pred CEEEeeCCCCCCCCcccccchHHHHHHHHHHHHH-hcCCceEeecCCCCcchHHHHHHHHc-------------------
Confidence 4688886665 9999999999999999999999 89999999999999999999998876
Q ss_pred hhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHH
Q psy13464 132 LHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKV 211 (515)
Q Consensus 132 ~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~ 211 (515)
+.++++++
T Consensus 65 --------------------------------------------------------g~~~~e~~---------------- 72 (648)
T PRK12267 65 --------------------------------------------------------GKTPQEYV---------------- 72 (648)
T ss_pred --------------------------------------------------------CCCHHHHH----------------
Confidence 55555332
Q ss_pred HHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccc
Q psy13464 212 VRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRT 291 (515)
Q Consensus 212 ~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 291 (515)
.+
T Consensus 73 --------------------------------------------------------------d~---------------- 74 (648)
T PRK12267 73 --------------------------------------------------------------DE---------------- 74 (648)
T ss_pred --------------------------------------------------------------HH----------------
Confidence 33
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccc--cHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC----Cc---
Q psy13464 292 VVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSE--FIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP----HY--- 362 (515)
Q Consensus 292 ~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTe--hI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~----~Y--- 362 (515)
|++.|.++|++|||.+ |.|.|+|+ |.+.+++++++|.++|++|+ .+..++||+..-. .+
T Consensus 75 ----------~~~~fk~~l~~lgI~~-D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~-~~~~~~yc~~~~~~l~~~~l~~ 142 (648)
T PRK12267 75 ----------ISAGFKELWKKLDISY-DKFIRTTDERHKKVVQKIFEKLYEQGDIYK-GEYEGWYCVSCETFFTESQLVD 142 (648)
T ss_pred ----------HHHHHHHHHHHcCCCC-CCCeeCCCHHHHHHHHHHHHHHHHCCCEEE-eeEEEeecCCCCccCChHHhcc
Confidence 8999999999999985 99999997 99999999999999999998 7778899877521 11
Q ss_pred -ce--ecccCC----------CCC------ccCcccCccCc---------c--ccccc-cCC-CCcccC-CCCCCCCCcc
Q psy13464 363 -FK--LWGRNE----------NIT------QHAVKRSPFDF---------A--LWKSA-KPG-EPWYES-AWGKGRPGWH 409 (515)
Q Consensus 363 -G~--Ls~~~~----------~~t------~~~~Kr~~~DF---------a--LWK~~-~~g-ep~W~S-pwG~GRPGWH 409 (515)
|. .++... .++ .+..+++| +| . =|=.. .++ ..+.+. +||---|++.
T Consensus 143 ~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~ 221 (648)
T PRK12267 143 GGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENP-DFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDP 221 (648)
T ss_pred CCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCC-cccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCC
Confidence 11 112111 010 01112221 11 0 02111 000 012332 4655555431
Q ss_pred --------------cccch-------hhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcc-cEEEEeeeeeeC
Q psy13464 410 --------------IECSA-------MASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWV-NYWLHTGHLRGT 467 (515)
Q Consensus 410 --------------iECSA-------M~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a-~yWlH~G~v~v~ 467 (515)
|.+.. --.+++ +-|+|..|.|+++.|--.+.|...++ |. +++ +...| |||+++
T Consensus 222 ~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~w--p~~~~~~GkDii~fH~i~wpa~l~~~-~~-~~p~~v~~h-g~l~~e 296 (648)
T PRK12267 222 KHVVYVWIDALLNYITALGYGSDDDELFKKFW--PADVHLVGKDILRFHAIYWPIMLMAL-GL-PLPKKVFAH-GWWLMK 296 (648)
T ss_pred CCEEEEcccchHHHHHHcCCCCCCchHHHhhc--ccceEEEeeeecchhHHHHHHHHHhC-CC-CCCcEEEec-ceEEEC
Confidence 11110 012233 45899999999999999999998887 64 455 55666 999999
Q ss_pred CCcccccccceeccccccccccCccccCC
Q psy13464 468 DGTRRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 468 G~KMSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
|+|||||+||+|++.++++. ||+|+.|-
T Consensus 297 g~KMSKS~GN~i~p~d~l~~-ygaD~lR~ 324 (648)
T PRK12267 297 DGKMSKSKGNVVDPEELVDR-YGLDALRY 324 (648)
T ss_pred CceecccCCcccCHHHHHHH-cCCcHHHH
Confidence 99999999999999999999 99997653
No 25
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.96 E-value=2.8e-30 Score=265.23 Aligned_cols=191 Identities=16% Similarity=0.194 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHcCCCCC---cccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC---CcceecccCCCCCc
Q psy13464 301 RYELEYFESMEKFGVLPP---TRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP---HYFKLWGRNENITQ 374 (515)
Q Consensus 301 ~y~~~F~edm~aLNI~~P---D~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~---~YG~Ls~~~~~~t~ 374 (515)
+|++.|.++|++|||..+ ...+..++|++.+++++++|.++|++|+ .++.|||.+...+ .|-.|+.....+.
T Consensus 88 ~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~-~~~~v~~~v~~~~~~qwf~~l~~~~~~l~- 165 (338)
T cd00818 88 RYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYR-GYKVVPWPLIYRATPQWFIRVTKIKDRLL- 165 (338)
T ss_pred HHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEec-cCCeeeeEEEEEecCeEEEEcHHHHHHHH-
Confidence 399999999999999765 3445555899999999999999999998 7889999433211 2444442211000
Q ss_pred cCcccCccCc---------cccccccCC-CCcccCCCCCCCCCcccc-cc--------------------hhhhh-h---
Q psy13464 375 HAVKRSPFDF---------ALWKSAKPG-EPWYESAWGKGRPGWHIE-CS--------------------AMASH-F--- 419 (515)
Q Consensus 375 ~~~Kr~~~DF---------aLWK~~~~g-ep~W~SpwG~GRPGWHiE-CS--------------------AM~~~-~--- 419 (515)
+..++ .+| .=|=...++ -.+.+..||---|.|-+| |+ .++.. +
T Consensus 166 ~~~~~--~~~~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~ 243 (338)
T cd00818 166 EANDK--VNWIPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFE 243 (338)
T ss_pred HHHhc--CcEECHHHHHHHHHHHhcchhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHcCCCCc
Confidence 00000 111 001111111 013345577777777665 31 11111 1
Q ss_pred ---cC--CCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCcccc
Q psy13464 420 ---FG--GQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTC 494 (515)
Q Consensus 420 ---lG--~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~ 494 (515)
+. .+.|+|..|.|+++.|.-.-+..+.++.|..++.++|+|...+..+|+|||||+||+|+++++++. ||+|+.
T Consensus 244 ~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~~~~~~~-~~~D~~ 322 (338)
T cd00818 244 NEDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDPQEVVDK-YGADAL 322 (338)
T ss_pred chhhhccCCCeEEeecchHHhHHHHHHHHHHHHhcCCCccceEEEEeeEECCCCCCCCCCCCCcCCHHHHHHH-cCcHHH
Confidence 11 245899999999986655556666666676667799999555556899999999999999999999 999976
Q ss_pred CC
Q psy13464 495 AG 496 (515)
Q Consensus 495 ~~ 496 (515)
|-
T Consensus 323 R~ 324 (338)
T cd00818 323 RL 324 (338)
T ss_pred HH
Confidence 53
No 26
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.7e-28 Score=263.12 Aligned_cols=246 Identities=17% Similarity=0.176 Sum_probs=185.1
Q ss_pred CccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHhhhcccccc
Q psy13464 60 PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGS 139 (515)
Q Consensus 60 ptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ 139 (515)
|+|++.+||||++++|.+||++||+| +.|++|.||++.++++.||..+|+++
T Consensus 14 pY~Ng~~HlGH~~~~l~ADv~aRy~R-l~G~~v~fvtGtDeHGt~I~~~A~~~--------------------------- 65 (558)
T COG0143 14 PYPNGPPHLGHLYTYLAADVYARYLR-LRGYEVFFLTGTDEHGTKIELKAEKE--------------------------- 65 (558)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHH-hcCCeEEEEeccCCCCCHHHHHHHHc---------------------------
Confidence 88999999999999999999999999 99999999999999999999999997
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHHHHHHHHHH
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDL 219 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l 219 (515)
|.+|++++
T Consensus 66 ------------------------------------------------g~tP~el~------------------------ 73 (558)
T COG0143 66 ------------------------------------------------GITPQELV------------------------ 73 (558)
T ss_pred ------------------------------------------------CCCHHHHH------------------------
Confidence 78888655
Q ss_pred HhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccchhhhhhhh
Q psy13464 220 KKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFN 299 (515)
Q Consensus 220 ~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (515)
.+
T Consensus 74 ------------------------------------------------------d~------------------------ 75 (558)
T COG0143 74 ------------------------------------------------------DK------------------------ 75 (558)
T ss_pred ------------------------------------------------------HH------------------------
Confidence 23
Q ss_pred HHHHHHHHHHHHHcCCCCCccccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC------------Ccc--
Q psy13464 300 FRYELEYFESMEKFGVLPPTRATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP------------HYF-- 363 (515)
Q Consensus 300 ~~y~~~F~edm~aLNI~~PD~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~------------~YG-- 363 (515)
|++.|.++++.|||+. |.|.|+| +|.+.+++++++|.+||++|. .+-.++||++.-. .-|
T Consensus 76 --~~~~~~~~~~~l~Isf-D~F~rTt~~~h~~~vq~~f~~L~~~G~I~~-~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~ 151 (558)
T COG0143 76 --NHEEFKELFKALNISF-DNFIRTTSPEHKELVQEFFLKLYENGDIYL-REYEGLYCVSCERFLPDRYVEGTCPKCGGE 151 (558)
T ss_pred --HHHHHHHHHHHhCCcc-cccccCCCHHHHHHHHHHHHHHHHCCCEec-cceeeeEcccccccccchheeccCCCcCcc
Confidence 8899999999999998 9999999 599999999999999999998 7788999988721 111
Q ss_pred ------------eecccCC-------C--------------------------------------------------CCc
Q psy13464 364 ------------KLWGRNE-------N--------------------------------------------------ITQ 374 (515)
Q Consensus 364 ------------~Ls~~~~-------~--------------------------------------------------~t~ 374 (515)
.+++..+ + +.+
T Consensus 152 ~arGD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d 231 (558)
T COG0143 152 DARGDQCENCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKD 231 (558)
T ss_pred ccCcchhhhccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHHHHccCcc
Confidence 1222121 0 001
Q ss_pred cCcccCccCccccccccCCCC-----cc-cCCCCC----CCCCcccccchhhhhhcCCC--ceEeeecccccCCccchhH
Q psy13464 375 HAVKRSPFDFALWKSAKPGEP-----WY-ESAWGK----GRPGWHIECSAMASHFFGGQ--VDLHTGGIDLKFPHHENEE 442 (515)
Q Consensus 375 ~~~Kr~~~DFaLWK~~~~gep-----~W-~SpwG~----GRPGWHiECSAM~~~~lG~~--~DIH~GG~DL~FPHHENEi 442 (515)
....|++.| |...-||.| .| |.|.|. |.+.= +.-...-.+++..+ --+|..|.|.+++|.-.+.
T Consensus 232 ~~IsR~~~~---WGipvP~~p~kv~YVWfDAligYisa~~~~~~-~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wP 307 (558)
T COG0143 232 LSITRTDLD---WGIPVPGDPGKVIYVWFDALIGYISALGELAE-IGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWP 307 (558)
T ss_pred cceecCCCC---CCccCCCCCCCEEEEeeccHHHHHHHhcchhc-cCChHHHHhhCCCCCceEEEEeccccCcchhhHHH
Confidence 112222233 444334333 12 222210 00000 00112334455442 3499999999999999999
Q ss_pred HHHhhhcCCCCcc-cEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 443 AQSCAFHNQSQWV-NYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 443 AQsea~~g~~~~a-~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
|...++ |. +.+ ++..| |+|+++|+|||||+||+|.+.++++. ||.|..|
T Consensus 308 amL~~~-~~-~lP~~i~ah-g~l~~~G~KmSKSrG~~V~~~~~~~~-~~~D~lR 357 (558)
T COG0143 308 AMLMAA-GL-PLPTRIFAH-GFLTLEGQKMSKSRGNVVDPDELLEQ-YGVDALR 357 (558)
T ss_pred HHHHhC-CC-CCCCEEEee-eeEEECCccccccCCcEEeHHHHHHH-cCchHhH
Confidence 999998 53 455 66666 99999999999999999999999999 9999765
No 27
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.95 E-value=4.3e-27 Score=226.91 Aligned_cols=139 Identities=16% Similarity=0.086 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC--CcceecccCCCCCccCccc
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP--HYFKLWGRNENITQHAVKR 379 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~--~YG~Ls~~~~~~t~~~~Kr 379 (515)
+++.|.+++++|||.+ |.++|+|++++.|++++++|+++|++|+ .+|.+||+++++. .--.|.++|+ +..|..+
T Consensus 70 ~~~~~~~~~~~L~i~~-d~~~~es~~~~~~~~~i~~L~~~g~~~~-~~g~~~~~~~~~~~~~d~vl~rsdG--~~~Y~~~ 145 (212)
T cd00671 70 SIKADLETYGRLDVRF-DVWFGESSYLGLMGKVVELLEELGLLYE-EDGALWLDLTEFGDDKDRVLVRSDG--TYTYFTR 145 (212)
T ss_pred HHHHHHHHHHHhCCcC-ceecchhhhhhHHHHHHHHHHHCCCEEE-eCCcEEEechhhCCCCCeEEEECCC--CccchHH
Confidence 8899999999999995 9999999999999999999999999998 7999999998874 3456778888 6667777
Q ss_pred CccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccE-E
Q psy13464 380 SPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNY-W 458 (515)
Q Consensus 380 ~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~y-W 458 (515)
| +..++||.. .+.+..|.+-|.|+.-.-. --.+..+++ |..+.+++ +
T Consensus 146 D-lA~~~~~~~-----------------------------~~~~~~i~v~g~~~~~~~~-~~~~~~~~l-g~~~~~~~~h 193 (212)
T cd00671 146 D-IAYHLDKFE-----------------------------RGADKIIYVVGADHHGHFK-RLFAALELL-GYDEAKKLEH 193 (212)
T ss_pred H-HHHHHHHHh-----------------------------cCCCEEEEEECCCHHHHHH-HHHHHHHHc-CCCCCCCeEE
Confidence 7 777788764 2456678899999864222 123334443 53312344 6
Q ss_pred EEeeeeeeC-CCccccccc
Q psy13464 459 LHTGHLRGT-DGTRRLRAA 476 (515)
Q Consensus 459 lH~G~v~v~-G~KMSks~G 476 (515)
+-.|+|.++ |+|||||.|
T Consensus 194 ~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 194 LLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEEeEEcCCCCCCCCCCC
Confidence 666999998 899999987
No 28
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.93 E-value=1.7e-26 Score=242.08 Aligned_cols=248 Identities=15% Similarity=0.128 Sum_probs=169.8
Q ss_pred CccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHhhhcccccc
Q psy13464 60 PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGS 139 (515)
Q Consensus 60 ptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ 139 (515)
|+|++.+||||+++||.+|+++||+| +.|++|.|+++.++++.||..+|+++
T Consensus 8 pY~Ng~lHlGH~~~~l~ADv~aR~~r-~~G~~v~~~tGtDehG~~i~~~A~~~--------------------------- 59 (391)
T PF09334_consen 8 PYPNGDLHLGHLYPYLAADVLARYLR-LRGHDVLFVTGTDEHGSKIETAAEKQ--------------------------- 59 (391)
T ss_dssp EETSSS-BHHHHHHHHHHHHHHHHHH-HTT-EEEEEEEEE-SSHHHHHHHHHT---------------------------
T ss_pred CCCCCCCCCChhHHHHHHHHHHHHHh-hcccceeeEEecchhhHHHHHHHHHc---------------------------
Confidence 78899999999999999999999999 89999999999999999999999997
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHHHHHHHHHH
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDL 219 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l 219 (515)
+.++++++
T Consensus 60 ------------------------------------------------g~~p~~~~------------------------ 67 (391)
T PF09334_consen 60 ------------------------------------------------GIDPEEFC------------------------ 67 (391)
T ss_dssp ------------------------------------------------TS-HHHHH------------------------
T ss_pred ------------------------------------------------CCCHHHHH------------------------
Confidence 77777544
Q ss_pred HhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccchhhhhhhh
Q psy13464 220 KKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFN 299 (515)
Q Consensus 220 ~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (515)
.+
T Consensus 68 ------------------------------------------------------~~------------------------ 69 (391)
T PF09334_consen 68 ------------------------------------------------------DK------------------------ 69 (391)
T ss_dssp ------------------------------------------------------HH------------------------
T ss_pred ------------------------------------------------------HH------------------------
Confidence 23
Q ss_pred HHHHHHHHHHHHHcCCCCCccccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC----Cc--cee------
Q psy13464 300 FRYELEYFESMEKFGVLPPTRATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP----HY--FKL------ 365 (515)
Q Consensus 300 ~~y~~~F~edm~aLNI~~PD~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~----~Y--G~L------ 365 (515)
|++.|.+++++|||.. |.|.|+| +|.+.+++++++|.++|++|+ ++-..+|+++.-. .| |.-
T Consensus 70 --~~~~~~~~~~~~~I~~-D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~-~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~ 145 (391)
T PF09334_consen 70 --YSAKFKELLEALNISY-DRFIRTTDDRHKEFVQEIFKRLYDNGYIYK-REYEGWYCPSCERFLPESFVEGTCPYCGSD 145 (391)
T ss_dssp --HHHHHHHHHHHTT----SEEEETTSHHHHHHHHHHHHHHHHTTSEEE-EEEEEEEETTTTEEE-GGGETCEETTT--S
T ss_pred --HHHHHHHHHHHcCCCC-cceeCCCCHHHHHHHHHHHHHHHhcCceee-cccceeEecCcCcccccceeeccccCcCcc
Confidence 8999999999999997 9999999 599999999999999999998 7888999987721 11 100
Q ss_pred --------------cccCC----------------------CCC------ccCcccCccCcccccccc-----------C
Q psy13464 366 --------------WGRNE----------------------NIT------QHAVKRSPFDFALWKSAK-----------P 392 (515)
Q Consensus 366 --------------s~~~~----------------------~~t------~~~~Kr~~~DFaLWK~~~-----------~ 392 (515)
...++ .++ .+.-..+ -+| |.... .
T Consensus 146 ~a~g~~Ce~cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~-~~~--~~~~~~~~~~~~l~~~L 222 (391)
T PF09334_consen 146 KARGDQCENCGRPLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESN-PDF--PPPRVREIVRNWLKEGL 222 (391)
T ss_dssp SCTTTEETTTSSBEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHS-TTS--SHHHHHHHHHHHHHT--
T ss_pred ccCCCcccCCCCCcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcC-CCC--CChhHHHHHHHHhhccc
Confidence 00000 000 0000000 011 21100 0
Q ss_pred CC--CcccCCCCCCCCC--------c------ccccc----------hhhhhhc---CCCceEeeecccccCCccchhHH
Q psy13464 393 GE--PWYESAWGKGRPG--------W------HIECS----------AMASHFF---GGQVDLHTGGIDLKFPHHENEEA 443 (515)
Q Consensus 393 ge--p~W~SpwG~GRPG--------W------HiECS----------AM~~~~l---G~~~DIH~GG~DL~FPHHENEiA 443 (515)
.+ .+-+.+||---|+ | +|-+. .-..+++ +..-.+|..|.|.++.|.-.+.|
T Consensus 223 ~d~~Is~~~~WGI~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa 302 (391)
T PF09334_consen 223 PDLSISRPLDWGIPVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPA 302 (391)
T ss_dssp --EE-ECTTSSSEEETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHH
T ss_pred CceeeecCCCCcceeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHH
Confidence 00 1334456644443 3 12121 1122333 22345999999999999999999
Q ss_pred HHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 444 QSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 444 Qsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
...|+ | -++++..+-+||++++|+|||||+||+|.++++++. ||+|+.|
T Consensus 303 ~l~a~-~-~~lP~~i~~~~~~~~~g~K~SkS~gn~i~~~~~~~~-~~~D~~R 351 (391)
T PF09334_consen 303 MLLAA-G-LPLPRRIVVHGFLTLDGEKMSKSRGNVIWPDDLLEE-YGADALR 351 (391)
T ss_dssp HHHHC-T-B---SEEEEE--EEETTCCEETTTTESSBHHHHHHH-H-HHHHH
T ss_pred HHhcc-c-CCCCCEEEeeeeEEECCeeccccCCcccCHHHHHHh-CChHHHH
Confidence 99995 5 466766555599999999999999999999999999 9999655
No 29
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.92 E-value=2e-24 Score=243.76 Aligned_cols=259 Identities=12% Similarity=0.070 Sum_probs=183.4
Q ss_pred eEEEcC--CccCCCCCCcchh-hHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHH
Q psy13464 54 KWYACG--PTVYDSPHIGHAV-CNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFK 130 (515)
Q Consensus 54 ~~y~cg--ptvyd~~HiGhaR-~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~ 130 (515)
+.|+.= |+|++.+||||++ +||.+|+++||+| +.|++|.|+++.++++.||..+|++.
T Consensus 18 ~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r-~~G~~v~f~~GtDehG~~i~~~A~~~------------------ 78 (801)
T PLN02610 18 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCR-LRGYNAIYICGTDEYGTATETKALEE------------------ 78 (801)
T ss_pred CEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHH-hCCCceEecccccCCcHHHHHHHHHc------------------
Confidence 344443 7788999999999 6899999999999 99999999999999999999998875
Q ss_pred hhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHH
Q psy13464 131 ILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQK 210 (515)
Q Consensus 131 ~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~ 210 (515)
+.++++++
T Consensus 79 ---------------------------------------------------------g~~p~e~~--------------- 86 (801)
T PLN02610 79 ---------------------------------------------------------NCTPKEIC--------------- 86 (801)
T ss_pred ---------------------------------------------------------CCCHHHHH---------------
Confidence 66666543
Q ss_pred HHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCcccc
Q psy13464 211 VVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLR 290 (515)
Q Consensus 211 ~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 290 (515)
.+
T Consensus 87 ---------------------------------------------------------------d~--------------- 88 (801)
T PLN02610 87 ---------------------------------------------------------------DK--------------- 88 (801)
T ss_pred ---------------------------------------------------------------HH---------------
Confidence 33
Q ss_pred chhhhhhhhHHHHHHHHHHHHHcCCCCCccccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC--------
Q psy13464 291 TVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP-------- 360 (515)
Q Consensus 291 ~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~-------- 360 (515)
|++.|.+++++|||.. |.|.|+| +|...+++++++|.++|++|+ ....++||++.-.
T Consensus 89 -----------~~~~~~~~~~~l~i~~-D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~-~~~~~~yc~~~e~fl~d~~v~ 155 (801)
T PLN02610 89 -----------YHAIHKEVYDWFDISF-DKFGRTSTPQQTEICQAIFKKLMENNWLSE-NTMQQLYCDTCQKFLADRLVE 155 (801)
T ss_pred -----------HHHHHHHHHHHcCCcc-ccCccCCCHHHHHHHHHHHHHHHHCCCEEE-eeEEEeecCCCCCCcchHHhc
Confidence 8899999999999997 9999999 499999999999999999998 7788999877511
Q ss_pred ----C--------cc--------------------eecccCC----------CCC------ccCcccCcc------Cc-c
Q psy13464 361 ----H--------YF--------------------KLWGRNE----------NIT------QHAVKRSPF------DF-A 385 (515)
Q Consensus 361 ----~--------YG--------------------~Ls~~~~----------~~t------~~~~Kr~~~------DF-a 385 (515)
. || .+++... .++ ...-+.++. .. .
T Consensus 156 G~CP~~~C~~~~a~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~ 235 (801)
T PLN02610 156 GTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQ 235 (801)
T ss_pred CcCCccccCccccccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHH
Confidence 1 22 0111111 000 000011100 00 0
Q ss_pred c---ccc-ccCC-CCcccCCCCCCCCCc----------------ccccc-h---hhhhhcCCCce---EeeecccccCCc
Q psy13464 386 L---WKS-AKPG-EPWYESAWGKGRPGW----------------HIECS-A---MASHFFGGQVD---LHTGGIDLKFPH 437 (515)
Q Consensus 386 L---WK~-~~~g-ep~W~SpwG~GRPGW----------------HiECS-A---M~~~~lG~~~D---IH~GG~DL~FPH 437 (515)
+ |=. ..++ ..+.+.+||--.|.. .|.+. . .-.+++..+=| +|..|.|.++.|
T Consensus 236 ~~~~~l~~gL~d~~IsR~~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH 315 (801)
T PLN02610 236 TTNAWLRDGLKPRCITRDLKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFH 315 (801)
T ss_pred HHHHHHhCCCCCcceeeecCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhH
Confidence 0 211 1111 124455676555521 12221 0 11234543223 899999999999
Q ss_pred cchhHHHHhhhcCCC-CcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 438 HENEEAQSCAFHNQS-QWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 438 HENEiAQsea~~g~~-~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
.-.+.|...|+ |.. +.++-.+-+||++++|+|||||+||+|++.++++.+||+|+.|
T Consensus 316 ~i~wPa~L~a~-g~~~~~p~~i~~~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lR 373 (801)
T PLN02610 316 TVMFPSTLLGT-GENWTMMKTISVTEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWR 373 (801)
T ss_pred HHHHHHHHHhC-CCCcCCCCEEEeccCEecCCceecCcCCcccCHHHHHhccCCchHhH
Confidence 99999999997 532 2445545559999999999999999999999999669999765
No 30
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.90 E-value=5.4e-24 Score=192.46 Aligned_cols=65 Identities=18% Similarity=0.101 Sum_probs=59.0
Q ss_pred cccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCC-Ccccccc
Q psy13464 408 WHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTD-GTRRLRA 475 (515)
Q Consensus 408 WHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G-~KMSks~ 475 (515)
||++|+|+...+.+..++|++||.|+.+ |+++.+++++++.+ ..+.+|+|.|+|..++ +|||||+
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~-h~~~~~~i~~~~~~--~~~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGG--PARPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHH-HHHHHHHHHHHhCC--CCCceEEEeCCeECCCCCcCCCCC
Confidence 9999999999999988999999999999 99999999999843 2356899999999965 8999995
No 31
>KOG0436|consensus
Probab=99.89 E-value=1.3e-22 Score=211.52 Aligned_cols=256 Identities=20% Similarity=0.212 Sum_probs=184.7
Q ss_pred eEEEcCCcc--CCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHh
Q psy13464 54 KWYACGPTV--YDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKI 131 (515)
Q Consensus 54 ~~y~cgptv--yd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~ 131 (515)
..|+--|-. +..|||||+++.+.+|+++||.+ ..|-.|++..+.++++.||...|...
T Consensus 40 ~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~-lkg~~v~fsTGTDEHGlKIqtaaatn------------------- 99 (578)
T KOG0436|consen 40 TFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQR-LKGKKVIFSTGTDEHGLKIQTAAATN------------------- 99 (578)
T ss_pred eeEEecceeecCCCcchhHHHHHHHHHHHHHHHh-hcCCceEeecCCCccchhhhhhHhhc-------------------
Confidence 455666654 58999999999999999999999 89999999999999999999888764
Q ss_pred hhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHH
Q psy13464 132 LHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKV 211 (515)
Q Consensus 132 ~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~ 211 (515)
|.+|++.+++
T Consensus 100 --------------------------------------------------------G~~P~e~cDr-------------- 109 (578)
T KOG0436|consen 100 --------------------------------------------------------GRNPPELCDR-------------- 109 (578)
T ss_pred --------------------------------------------------------CCChHHHHhh--------------
Confidence 7777766642
Q ss_pred HHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccc
Q psy13464 212 VRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRT 291 (515)
Q Consensus 212 ~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 291 (515)
T Consensus 110 -------------------------------------------------------------------------------- 109 (578)
T KOG0436|consen 110 -------------------------------------------------------------------------------- 109 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccc--cHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC--Ccceecc
Q psy13464 292 VVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSE--FIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP--HYFKLWG 367 (515)
Q Consensus 292 ~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTe--hI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~--~YG~Ls~ 367 (515)
..++|....+.+||.. +.|.|+|+ |...+++|+..+.+||++|. .+-.-+|+++.-. .-.++..
T Consensus 110 ----------~s~~f~qL~k~~gi~y-t~FIRTTdpkH~a~Vqefw~~~~knG~iy~-g~~eGwYcvsdEtf~pEskv~k 177 (578)
T KOG0436|consen 110 ----------ISQSFRQLWKDAGIAY-TKFIRTTDPKHEAIVQEFWARVFKNGDIYR-GDYEGWYCVSDETFYPESKVLK 177 (578)
T ss_pred ----------hhHHHHHHHHHhCcch-hheeecCCchHHHHHHHHHHHHHhCCceee-ecccceEeccccccCCHHHHhc
Confidence 4477888889999998 99999995 99999999999999999998 6666788888722 1111111
Q ss_pred cCC------CC----CccCcccCccCccccccccCCC------C-------------cc------------cC---CCCC
Q psy13464 368 RNE------NI----TQHAVKRSPFDFALWKSAKPGE------P-------------WY------------ES---AWGK 403 (515)
Q Consensus 368 ~~~------~~----t~~~~Kr~~~DFaLWK~~~~ge------p-------------~W------------~S---pwG~ 403 (515)
... ++ +....|.+..=|.|=|+.+|=+ | .| .| .||-
T Consensus 178 ~p~~~gk~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGI 257 (578)
T KOG0436|consen 178 NPCPPGKVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGI 257 (578)
T ss_pred CCCCCCceeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCC
Confidence 110 11 1122333333344433322111 0 00 00 1443
Q ss_pred CCCC--------cccccchh--------------hhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcc-cEEEE
Q psy13464 404 GRPG--------WHIECSAM--------------ASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWV-NYWLH 460 (515)
Q Consensus 404 GRPG--------WHiECSAM--------------~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a-~yWlH 460 (515)
--|| |-=.--.. +.-.+|.+-.+|+.|.|.+..|.-++.|...|+ | -+++ +..+|
T Consensus 258 PvP~ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaA-G-lplP~~I~vH 335 (578)
T KOG0436|consen 258 PVPGDDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAA-G-LPLPKMIFVH 335 (578)
T ss_pred CCCCCCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhc-C-CCCccEEEEe
Confidence 3333 21000000 001134567899999999999999999999999 7 4666 56888
Q ss_pred eeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 461 TGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 461 ~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
||++.+|.|||||+||.|+|.+++++ ||+|+.|
T Consensus 336 -ghwt~ngmKMsKSLGNvvdP~~l~~k-ygvD~vR 368 (578)
T KOG0436|consen 336 -GHWTKNGMKMSKSLGNVVDPFELVQK-YGVDAVR 368 (578)
T ss_pred -eeeeecceecchhhccccCHHHHHHH-hCcccee
Confidence 99999999999999999999999999 9999875
No 32
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.87 E-value=5e-22 Score=224.40 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=65.2
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeee-eCCCcccccccceeccccccccccCccccCC
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR-GTDGTRRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~-v~G~KMSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
+.|++++|.|++|.|--.-++|+.+++|..||.++|+| |+|. .+|+|||||+||+|+|.++++. ||+|+.|-
T Consensus 486 P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~h-g~v~~~~G~KMSKS~GN~i~p~~~i~~-yg~D~lR~ 558 (800)
T PRK13208 486 PMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMIS-GMVLDPDGKKMSKSKGNVVTPEELLEK-YGADAVRY 558 (800)
T ss_pred CceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEe-eEEECCCCCCCCCCCCCCCCHHHHHHH-cCccHHHH
Confidence 57999999999999999999999999987788889888 7765 6999999999999999999999 99997654
No 33
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.86 E-value=3.9e-22 Score=217.41 Aligned_cols=177 Identities=18% Similarity=0.181 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeec-CCcEEEeccCCCCcceecc-cCC---------
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGS-DHSVYFDVDSFPHYFKLWG-RNE--------- 370 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~k-dGsVYFDv~~~~~YG~Ls~-~~~--------- 370 (515)
|.+.+++||+.||+. +|...++|++++.+.+++++|+++|+||.-. .+.. +.+...+|..+. ++.
T Consensus 154 ~~~~I~edL~wLGl~-wD~~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee---~~~~r~~g~~~~~R~~~~ee~l~~~ 229 (567)
T PRK04156 154 AYDMILEDLKWLGVK-WDEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEE---FKELRDAGKPCPHRDKSPEENLELW 229 (567)
T ss_pred HHHHHHHHHHHcCCC-CCCccCcccCHHHHHHHHHHHHHcCCCccCCCCHHH---HHHHHhcCCCCCCcCCCHHHHHHHH
Confidence 558899999999996 5999999999999999999999999999711 1111 122233444331 111
Q ss_pred ---------------CCCccCcccCc--cCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccc
Q psy13464 371 ---------------NITQHAVKRSP--FDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDL 433 (515)
Q Consensus 371 ---------------~~t~~~~Kr~~--~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL 433 (515)
.+..+....|| +||++|+......|. ||.++++|++ -.|...+|.|..|++|
T Consensus 230 e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h~~----~Gd~~~i~Pt-------Y~fA~~VDD~l~GITH 298 (567)
T PRK04156 230 EKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHPR----VGDKYRVWPT-------YNFAVAVDDHLLGVTH 298 (567)
T ss_pred HHhhcCccccCCeEEEEECcccCCCCCccccEEEEEcCCCccc----cCCCeEEEEE-------eccCceeeecCCCCCe
Confidence 01122234566 899999975544453 8999999975 3788999999999999
Q ss_pred cC---CccchhHHHHhhhc--CCCCcccEEEEeeeeeeCCCcccccc-------c--------ceeccccccccccCccc
Q psy13464 434 KF---PHHENEEAQSCAFH--NQSQWVNYWLHTGHLRGTDGTRRLRA-------A--------RFITNLSGSTIGYTRDT 493 (515)
Q Consensus 434 ~F---PHHENEiAQsea~~--g~~~~a~yWlH~G~v~v~G~KMSks~-------G--------nfit~~~li~~~y~~D~ 493 (515)
++ +|++|..+|...+. |- +. -+|+|.+.|+++|.|||||+ | ++.|+..+-.+||..++
T Consensus 299 ViRg~d~~~~t~~Q~~l~~~Lg~-~~-P~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeA 376 (567)
T PRK04156 299 VLRGKDHIDNTEKQRYIYDYFGW-EY-PETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEA 376 (567)
T ss_pred EEcccccccChHHHHHHHHHcCC-CC-ceEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHH
Confidence 99 99999999998875 53 22 47899999999999999998 5 55788899999888874
Q ss_pred cC
Q psy13464 494 CA 495 (515)
Q Consensus 494 ~~ 495 (515)
.+
T Consensus 377 i~ 378 (567)
T PRK04156 377 IR 378 (567)
T ss_pred HH
Confidence 43
No 34
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.85 E-value=3.7e-21 Score=220.84 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=68.1
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
+.|+|++|.||+|+|+.++++++.|.++..+|++.|+|+|||+++|+|||||+||+|+|.++++. ||+|+.|
T Consensus 573 P~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~-yGaDalR 644 (938)
T TIGR00395 573 PLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEK-FGADVAR 644 (938)
T ss_pred CceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHH-cChHHHH
Confidence 57999999999999999999999999887778899999999999999999999999999999999 9999655
No 35
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.84 E-value=4.1e-20 Score=202.06 Aligned_cols=154 Identities=13% Similarity=0.006 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHcCCCCCcccccccc--cHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC---CcceecccCCCCCcc
Q psy13464 301 RYELEYFESMEKFGVLPPTRATRVSE--FIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP---HYFKLWGRNENITQH 375 (515)
Q Consensus 301 ~y~~~F~edm~aLNI~~PD~~pRaTe--hI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~---~YG~Ls~~~~~~t~~ 375 (515)
...+.|.+++++|||.+ |.+...++ +-..+.+++++|.++|++|+ + |.++++++.+. ..-.|.++|+ +..
T Consensus 236 ~~l~~~~~~~~~l~V~f-D~~~~E~e~~~~~~~~~v~~~L~~~g~~~~-~-Ga~~~~~~~~~d~~~~~vl~ksDG--t~~ 310 (566)
T TIGR00456 236 YSLEGIKETLARLNIHF-DSFVWEGESVKNGMVPKVLEDLKEKGLVVE-D-GALWLDLTLFGDKDKDRVLQKSDG--TYL 310 (566)
T ss_pred HHHHHHHHHHHHcCCce-eeeeccccccccccHHHHHHHHHHCCCEEE-c-CCEEEEcccccCCCCCeEEEECCC--Cce
Confidence 37899999999999998 98886665 44467899999999999997 5 99999988764 3567889999 788
Q ss_pred CcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhc---CCC
Q psy13464 376 AVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFH---NQS 452 (515)
Q Consensus 376 ~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~---g~~ 452 (515)
|..+| +.+++||... |.+..|.+-|.|+.-. ..|..++. |.
T Consensus 311 Y~t~D-iA~~~~k~~~-----------------------------~~d~iI~V~g~~q~~h-----~~~v~~~l~~lG~- 354 (566)
T TIGR00456 311 YLTRD-IAYHLDKLER-----------------------------GFDKMIYVWGSDHHLH-----IAQFFAILEKLGF- 354 (566)
T ss_pred echhh-HHHHHHHHhc-----------------------------CCCEEEEEecCcHHHH-----HHHHHHHHHHcCC-
Confidence 99999 9999999752 2356788889887531 22443332 63
Q ss_pred CcccEEEEeeeeeeCCCcccccccceeccc-----------------------cccccccCccccCC
Q psy13464 453 QWVNYWLHTGHLRGTDGTRRLRAARFITNL-----------------------SGSTIGYTRDTCAG 496 (515)
Q Consensus 453 ~~a~yWlH~G~v~v~G~KMSks~Gnfit~~-----------------------~li~~~y~~D~~~~ 496 (515)
+.+.-..|.++.+|+++|||||+||+|+++ ++++. +|.|+++=
T Consensus 355 ~~~~~l~h~~~~~V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~-vg~dAvRy 420 (566)
T TIGR00456 355 YKKKELIHLNFGMVPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADA-VGIGAVRY 420 (566)
T ss_pred CCCCceEEEEEEEEECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHH-hcccceee
Confidence 345557777999999999999999999998 67777 78887653
No 36
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.83 E-value=2.5e-20 Score=212.22 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=65.1
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeee-CCCcccccccceeccccccccccCccccC
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRG-TDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v-~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
+.|+|+.|.|++|.|.-..++.+.+++|..||-++++| |+|.. +|+|||||+||+|+|.++++. ||+|+.|
T Consensus 478 P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~h-G~v~d~~G~KMSKS~GN~i~p~~~i~~-ygaDalR 549 (861)
T TIGR00422 478 PTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIH-GLVRDEQGRKMSKSLGNVIDPLDVIEK-YGADALR 549 (861)
T ss_pred CcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEe-eEEECCCCCCCCcCCCCCCCHHHHHHH-hChHHHH
Confidence 46999999999999999999999999887677788999 88886 899999999999999999999 9999665
No 37
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.82 E-value=2.7e-20 Score=212.26 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=64.6
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeee-eCCCcccccccceeccccccccccCccccC
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR-GTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~-v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
+.|+|+.|.|++|.|...-++++.+.+|+.||.+.++| |+|. .+|+|||||+||+|+|.+++++ ||+|+.|
T Consensus 473 P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~h-G~v~d~~G~KMSKSlGNvIdP~dvi~~-yGaDalR 544 (874)
T PRK05729 473 PTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIH-GLVRDEQGRKMSKSKGNVIDPLDLIDK-YGADALR 544 (874)
T ss_pred CcccccccccccchHHHHHHHHHHHhcCCCchhheEEe-eeEECCCCCCcccCCCCCCCHHHHHHH-hChHHHH
Confidence 56999999999999999999999998887677799999 7776 7999999999999999999999 9999654
No 38
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.74 E-value=5.6e-18 Score=176.25 Aligned_cols=178 Identities=13% Similarity=0.088 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHcCCCCCcccccccc-cH--HHHHHHHHHHHHCCCeeeecC---C----cEEEecc-CCCCcceecccCC
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSE-FI--PHIQSFIQTLLDTKQAYIGSD---H----SVYFDVD-SFPHYFKLWGRNE 370 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTe-hI--~~iie~I~kLidnG~AYe~kd---G----sVYFDv~-~~~~YG~Ls~~~~ 370 (515)
|.+.|.+.|++|||.. | +.++|+ +- .--..+...|.+++.+.+.-+ | .=|+-.. --++-|++.- ..
T Consensus 106 ~~~~f~~~l~~lgi~~-d-~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg~~~~-~v 182 (353)
T cd00674 106 FERPFEESLEKLGIEV-E-FISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCGKDTT-TV 182 (353)
T ss_pred HHHHHHHHHHHcCCee-e-eeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcCccee-EE
Confidence 9999999999999996 7 555553 22 345566666777776643100 1 1111110 0123343310 00
Q ss_pred CCCccCcccCccCccccccccCCCCcccCCC-CCCCCCcccccchhhhhhcCCCceEeeecccccCC---ccchhHHHHh
Q psy13464 371 NITQHAVKRSPFDFALWKSAKPGEPWYESAW-GKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFP---HHENEEAQSC 446 (515)
Q Consensus 371 ~~t~~~~Kr~~~DFaLWK~~~~gep~W~Spw-G~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FP---HHENEiAQse 446 (515)
..+.... .-+-|+- .-|.-.+-+.. |.|--.|.+|= +|-..+| .+|+=.+|.||.-+ .-. -.+.++
T Consensus 183 ---~~~d~~~--~~v~y~c-~cG~~g~~~~~~g~~KL~Wr~dW-~~rW~~l--~Vd~E~~GkDh~~~ggs~~~-~~~i~~ 252 (353)
T cd00674 183 ---EAYDAKA--GTVTYKC-ECGHEETVDIRTGRGKLTWRVDW-PMRWAIL--GVDFEPFGKDHASAGGSYDT-GKEIAR 252 (353)
T ss_pred ---EEEeCCC--CeEEEEc-CCCCEEEEeecCCCcccCCCCCc-hhhhhhc--CCCEEeeCccccccccHHHH-HHHHHH
Confidence 0000000 0011111 12322222332 55556666663 4666677 56888899999866 331 222333
Q ss_pred -hhcCCCCcccEEEEeeeeeeCCC-cccccccceeccccccccccCccccCC
Q psy13464 447 -AFHNQSQWVNYWLHTGHLRGTDG-TRRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 447 -a~~g~~~~a~yWlH~G~v~v~G~-KMSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
++ |..+ + +.+.+|+|.++|+ |||||+||+|+++++++. |+.|+.|-
T Consensus 253 ~il-g~~~-P-~~~~ye~V~l~gg~KMSKSkGnvI~~~dll~~-~~~dalR~ 300 (353)
T cd00674 253 EIF-GGEP-P-VPVMYEFIGLKGGGKMSSSKGNVITPSDWLEV-APPEVLRY 300 (353)
T ss_pred HHh-CCCC-C-eEEEeeeEEeCCCCccCCCCCCcCCHHHHHHH-hChHHHHH
Confidence 33 5333 3 4466799999987 999999999999999999 99997653
No 39
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.74 E-value=1.5e-17 Score=190.73 Aligned_cols=72 Identities=15% Similarity=0.071 Sum_probs=61.0
Q ss_pred CCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeee-CCCcccccccceeccccccccccCccccC
Q psy13464 422 GQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRG-TDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 422 ~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v-~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
.+.|+|.+|.|+++-|.-.-+..+.+.+|..|+-+.+.| |+|.- +|+|||||+||+|+|.++++. ||+|+.|
T Consensus 544 ~P~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~H-G~vld~~G~KMSKSlGNvIdP~~ii~~-yGaDalR 616 (912)
T PRK05743 544 YPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTH-GFTVDGKGRKMSKSLGNVIDPQDVIKK-YGADILR 616 (912)
T ss_pred CCceEEEecccccchHHHHHHHHHHHhcCCCccceeEEe-eeEECCCCCCCCCCCCCcCCHHHHHHh-cChHHHH
Confidence 458999999999987766667777777787666677888 88875 999999999999999999999 9999655
No 40
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.71 E-value=2e-16 Score=173.24 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCCC-cceecccCCCCCccCcccC
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPH-YFKLWGRNENITQHAVKRS 380 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~~-YG~Ls~~~~~~t~~~~Kr~ 380 (515)
..+.|.+++++|||.+ |.+--.|.+-+.+.+++++|.++|++|+ ++|.++++++.+.. .-.|.++|+ +..|..+|
T Consensus 236 ~l~~~~~~~~~l~V~f-D~~~~es~~~~~~~~v~~~L~~~g~~~e-~dGa~~~~~~~~g~~~~vl~ksDG--t~~Y~t~D 311 (562)
T PRK12451 236 SLKEFSRIYELLGVEF-TNFQGEAFYNDLMEDFIGILEEHDLLEE-SEGALVVNLEEEGMPPCLIRKSDG--ATIYATRD 311 (562)
T ss_pred HHHHHHHHHHHcCCCc-eeecchHhhhhhHHHHHHHHHHCCCEEe-cCCeEEEEecccCCCceEEEeCCC--ccccchhH
Confidence 7789999999999998 8787777787888999999999999998 89999999876542 457889999 78899999
Q ss_pred ccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhc---CCCCcc-c
Q psy13464 381 PFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFH---NQSQWV-N 456 (515)
Q Consensus 381 ~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~---g~~~~a-~ 456 (515)
+.+++||.... |.+..|.+-|.|+.-.-. |..++. |.. ++ +
T Consensus 312 -iA~~~~k~~~~----------------------------~~d~~IyV~g~dq~~h~~-----~l~~~~~~lg~~-~~~~ 356 (562)
T PRK12451 312 -LTAALYRQNTF----------------------------GFDKALYVVGPEQSLHFN-----QFFTVLKKLGYT-WVDG 356 (562)
T ss_pred -HHHHHHHhhcc----------------------------CCCEEEEEeCCcHHHHHH-----HHHHHHHHcCCC-cccC
Confidence 89999998632 345679999999764222 433332 632 33 4
Q ss_pred E-EEEeeeeeeCCCcccccccceecccccccc
Q psy13464 457 Y-WLHTGHLRGTDGTRRLRAARFITNLSGSTI 487 (515)
Q Consensus 457 y-WlH~G~v~v~G~KMSks~Gnfit~~~li~~ 487 (515)
+ ++-.|+|.++|+|||||+||+|+++||++.
T Consensus 357 l~h~~~g~V~~~g~kmStR~G~~v~l~dLlde 388 (562)
T PRK12451 357 MEHVPFGLILKDGKKMSTRKGRVVLLEEVLEE 388 (562)
T ss_pred eEEEeeeeEecCCCCCcCCCCCeeEHHHHHHH
Confidence 5 888899999999999999999999999996
No 41
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.70 E-value=5.7e-17 Score=185.79 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=67.7
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
+.|+|++|.|++++|+.+.+.++.+.++..++++.++++|||..+|+|||||+||+|+|.+++++ ||+|+.|
T Consensus 530 P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~-yGaDalR 601 (897)
T PRK12300 530 PVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEE-YGADVVR 601 (897)
T ss_pred CceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHH-cChHHHH
Confidence 56999999999999999999999999987788888899999999999999999999999999999 9999765
No 42
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.69 E-value=3.4e-16 Score=169.78 Aligned_cols=88 Identities=11% Similarity=0.043 Sum_probs=69.6
Q ss_pred CCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeC-CCcccccccceec
Q psy13464 402 GKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGT-DGTRRLRAARFIT 480 (515)
Q Consensus 402 G~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~-G~KMSks~Gnfit 480 (515)
|.|--.|.+| =+|-..+| .+|+-.+|.||+-|++.--.++++..+|.++ + +.+|+|+|+++ |+|||||+||+|+
T Consensus 216 g~~KL~Wr~d-W~~rW~~l--~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~-P-~~~~y~~v~~~~G~KMSKSkGN~i~ 290 (510)
T PRK00750 216 GHGKLQWKVD-WPMRWAAL--GVDFEPFGKDHASASYDTSKKIAREILGGEP-P-EPFVYELFLDKKGEKISKSKGNVIT 290 (510)
T ss_pred CCcccCCCCC-cHHHHHHc--CCCEEeeCcccCcchHHHHHHHHHHHcCCCC-C-eeeeeeeEEeCCCCcccccCCCccC
Confidence 4555666666 35777788 5588889999999866666677774456443 3 55888999999 9999999999999
Q ss_pred cccccccccCccccC
Q psy13464 481 NLSGSTIGYTRDTCA 495 (515)
Q Consensus 481 ~~~li~~~y~~D~~~ 495 (515)
+.++++. |+.|+.|
T Consensus 291 ~~d~l~~-~~pd~lR 304 (510)
T PRK00750 291 IEDWLEY-APPESLR 304 (510)
T ss_pred HHHHHHH-CCHHHHH
Confidence 9999999 9999776
No 43
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=99.69 E-value=8.6e-17 Score=186.87 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=57.3
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeee-CCCcccccccceeccccccccccCccccC
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRG-TDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v-~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
+.|+|..|.|++|-|--.-++.+...+|..|+-+.++| |+|.. +|+|||||+||+|+|.++++. ||+|+.|
T Consensus 491 P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~h-G~v~d~~G~KMSKSkGNvIdP~dvIe~-yGaDalR 562 (1052)
T PRK14900 491 PTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLH-PMVRDEKGQKMSKTKGNVIDPLVITEQ-YGADALR 562 (1052)
T ss_pred CchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEec-ccEECCCCCCccCCCCCCCCHHHHHHH-hCcHHHH
Confidence 45899999999986554444444445565565577888 99988 999999999999999999999 9999654
No 44
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.69 E-value=1.2e-16 Score=182.06 Aligned_cols=72 Identities=17% Similarity=0.086 Sum_probs=59.9
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeee-CCCcccccccceeccccccccccCccccCC
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRG-TDGTRRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v-~G~KMSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
+.|+|.+|.|+++-|.-.-+..+.+.+|..|+.++++| |+|.. +|+|||||+||+|+|.++++. ||+|+.|-
T Consensus 564 P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~h-G~vl~~~G~KMSKSkGNvI~p~d~i~~-yGaDalR~ 636 (861)
T TIGR00392 564 PADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITH-GFTLDEKGRKMSKSLGNVVDPLKVINK-YGADILRL 636 (861)
T ss_pred CceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEec-ceEECCCCCCcCCCCCCCCCHHHHHHH-cCHHHHHH
Confidence 47999999999996665556666666676666688999 88875 899999999999999999999 99996653
No 45
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.69 E-value=7.2e-17 Score=160.24 Aligned_cols=138 Identities=19% Similarity=0.198 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCCCcceecccCCCCCccCcccCc
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWGRNENITQHAVKRSP 381 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~~YG~Ls~~~~~~t~~~~Kr~~ 381 (515)
+.+.+++||+.||+. +|..++.|++++.+++++++|+++|+||.. +. ..
T Consensus 54 ~~~~i~~dL~wLGl~-~d~~~~qS~r~~~y~~~~~~Li~~G~aY~~-------------------~~-----------~~ 102 (240)
T cd09287 54 AYDMIPEDLEWLGVK-WDEVVIASDRIELYYEYARKLIEMGGAYVH-------------------PR-----------TG 102 (240)
T ss_pred HHHHHHHHHHHcCCC-CCCccchhccHHHHHHHHHHHHHcCCcccC-------------------cc-----------cC
Confidence 456689999999995 698899999999999999999999999950 00 01
Q ss_pred cCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEe
Q psy13464 382 FDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHT 461 (515)
Q Consensus 382 ~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~ 461 (515)
.||.+| |..|+.|+. -....| ++--.-|.|+.= .-...++..+++ |.. .+.|+ |.
T Consensus 103 ~~~~i~------------------ptY~la~vV-DD~~~g--IThViRg~d~~~-~t~~q~~l~~~L-g~~-~P~~~-H~ 157 (240)
T cd09287 103 SKYRVW------------------PTLNFAVAV-DDHLLG--VTHVLRGKDHID-NTEKQRYIYEYF-GWE-YPETI-HW 157 (240)
T ss_pred CcEEEE------------------Eccccceee-eccccC--CCeEEechhhhh-CCHHHHHHHHHc-CCC-CCcEE-ee
Confidence 255553 666665432 112222 233334666642 333445555665 533 34454 99
Q ss_pred eeeeeCCCcccccccc---------------eeccccccccccCccccC
Q psy13464 462 GHLRGTDGTRRLRAAR---------------FITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 462 G~v~v~G~KMSks~Gn---------------fit~~~li~~~y~~D~~~ 495 (515)
..|..+|.|||||.+. ..|+..+-+.||..++++
T Consensus 158 pll~~~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~ 206 (240)
T cd09287 158 GRLKIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIR 206 (240)
T ss_pred eeecCCCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHH
Confidence 9999999999999952 247778888888887654
No 46
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.4e-15 Score=166.88 Aligned_cols=270 Identities=18% Similarity=0.111 Sum_probs=185.1
Q ss_pred CceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHH
Q psy13464 51 NHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFK 130 (515)
Q Consensus 51 ~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~ 130 (515)
.+|-+=---|.+-.+.||||+|+-|..|.|.|.|+ +.||+|.-.-=|-|.+--|-.-+..+...+....+
T Consensus 117 ~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~-~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~--------- 186 (577)
T COG0018 117 KKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILE-FLGYDVTRENYVNDWGTQIGMLALSYEKRGREALG--------- 186 (577)
T ss_pred CEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHH-HcCCCeeEEeeECcHHHHHHHHHHHHHHhcccccc---------
Confidence 45666666788899999999999999999999999 89999999999999998888777766443332221
Q ss_pred hhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHH
Q psy13464 131 ILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQK 210 (515)
Q Consensus 131 ~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~ 210 (515)
..++-.|....+.+++.+++.+++-. +
T Consensus 187 --------~~~~~~~~lg~~y~~i~~~~~~~~~~-------------------------~-------------------- 213 (577)
T COG0018 187 --------LTPEPDGYLGEYYVKIAKDLEEDPGN-------------------------D-------------------- 213 (577)
T ss_pred --------CCCCcchHHHHHHHHHHHHHHhCccc-------------------------c--------------------
Confidence 01111112212222222222110000 0
Q ss_pred HHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCcccc
Q psy13464 211 VVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLR 290 (515)
Q Consensus 211 ~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 290 (515)
+..+.+.+.+. +..|..+ . ++.++...
T Consensus 214 -------------------~~~~~~~~~k~-----e~~d~~~-~-------------lw~~~v~~--------------- 240 (577)
T COG0018 214 -------------------EEEAREEVEKL-----ESGDEEA-E-------------LWRKFVDL--------------- 240 (577)
T ss_pred -------------------hHHHHHHHHHH-----hcCChHH-H-------------HHHHHHHH---------------
Confidence 00000111000 1112222 3 33333444
Q ss_pred chhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHH--HHHHHHHHHHHCCCeeeecCCcEEEeccCCCCcc-----
Q psy13464 291 TVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIP--HIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYF----- 363 (515)
Q Consensus 291 ~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~--~iie~I~kLidnG~AYe~kdGsVYFDv~~~~~YG----- 363 (515)
..++|.+++.+|||.+ |.|-..++... .+.++++.|.++|++|+ ++|.++.|.+++..+|
T Consensus 241 -----------~l~~~k~~l~~l~V~f-D~~~~E~e~~~~~~~~~vv~~L~~~~~~~e-~~GA~~vdl~~~~~~gd~~~~ 307 (577)
T COG0018 241 -----------SLEGIKETLDRLGVKF-DVYDSEGESFYNGKVEKVVEDLEEKGLLYE-DDGALVVDLLKFKKFGDDKDR 307 (577)
T ss_pred -----------HHHHHHHHHHHhCccc-ceeeccchhhhcccHHHHHHHHHhcCCEee-eCCeEEEehhhhhhcCCCCCe
Confidence 7799999999999998 99988887544 58899999999999998 8999999999876665
Q ss_pred eecccCCCCCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHH
Q psy13464 364 KLWGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEA 443 (515)
Q Consensus 364 ~Ls~~~~~~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiA 443 (515)
.|.++|+ +..|..+| +.+++||.. .|.+..|.+-|.|+.-+ ++
T Consensus 308 vl~KSDG--t~lY~t~D-IAy~~~K~~-----------------------------~~~d~~IyV~gadq~~~-----~~ 350 (577)
T COG0018 308 VLQKSDG--TYLYFTRD-IAYHLYKFE-----------------------------RGFDKLIYVLGADQHGH-----FK 350 (577)
T ss_pred EEEEcCC--CeeeehhH-HHHHHHHHh-----------------------------cCCCEEEEEeCCcchhH-----HH
Confidence 5778888 88899999 999999975 26678899999997643 45
Q ss_pred HHhhhc---CCCCcc-cEEEEee--eeee-CCCcccccccceecccccccc
Q psy13464 444 QSCAFH---NQSQWV-NYWLHTG--HLRG-TDGTRRLRAARFITNLSGSTI 487 (515)
Q Consensus 444 Qsea~~---g~~~~a-~yWlH~G--~v~v-~G~KMSks~Gnfit~~~li~~ 487 (515)
|..++. |.. +. ..-+|.+ ++.. +|.|||||.|++||++++++.
T Consensus 351 ql~~~l~~~g~~-~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde 400 (577)
T COG0018 351 QLKAVLELLGYG-PDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDE 400 (577)
T ss_pred HHHHHHHHhcCC-CccceEEEEEEeeeECCCCccccccCCceEEHHHHHHH
Confidence 776633 432 34 3455544 4444 456899999999999999988
No 47
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.67 E-value=7.4e-16 Score=177.97 Aligned_cols=73 Identities=14% Similarity=0.001 Sum_probs=65.0
Q ss_pred CCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccc---------cccCcc
Q psy13464 422 GQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGST---------IGYTRD 492 (515)
Q Consensus 422 ~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~---------~~y~~D 492 (515)
.+.|+|+.|.|++|.|....+..+.+++|..|+.++|+|...+..+|+|||||+||+|+|.++++ + ||+|
T Consensus 563 ~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~-yGaD 641 (974)
T PLN02843 563 YPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPA-YGAD 641 (974)
T ss_pred CCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccc-cChH
Confidence 45799999999999999999999999988767889999944445589999999999999999999 7 9999
Q ss_pred ccC
Q psy13464 493 TCA 495 (515)
Q Consensus 493 ~~~ 495 (515)
+.|
T Consensus 642 ~lR 644 (974)
T PLN02843 642 VLR 644 (974)
T ss_pred HHH
Confidence 655
No 48
>PLN02943 aminoacyl-tRNA ligase
Probab=99.67 E-value=3.9e-16 Score=179.97 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=55.2
Q ss_pred CceEeeecccccCCccchhHHHHhh----hcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCA----FHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea----~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
+.|++..|.|++| .+.|-+.+ .+|+.||.++|+|...+..+|+|||||+||+|+|.++++. ||+|+.|
T Consensus 536 P~dl~~~G~Dii~----fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~-ygaDalR 607 (958)
T PLN02943 536 PTTVLETGHDILF----FWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKE-FGTDALR 607 (958)
T ss_pred CCeEEEEeehHHH----HHHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHh-cCChHHH
Confidence 4689999999996 36555332 3355577899999666678999999999999999999999 9999654
No 49
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.67 E-value=5.1e-16 Score=179.34 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=58.1
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeee-CCCcccccccceeccccccccccCccccC
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRG-TDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v-~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
+.|+++.|.|+++...-.-++.+.+++|..||.++++| |+|.- +|+|||||+||+|+|.++++. ||+|+.|
T Consensus 545 Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~h-G~Vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR 616 (975)
T PRK06039 545 PADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVH-GHVLDEDGQKMSKSLGNYVDPFEVFDK-YGADALR 616 (975)
T ss_pred CceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEe-eeEECCCCCCcCCCCCCcCCHHHHHHH-hChHHHH
Confidence 46899999999885443344556666777778788999 77765 899999999999999999999 9999665
No 50
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.65 E-value=7.5e-16 Score=177.72 Aligned_cols=71 Identities=13% Similarity=0.049 Sum_probs=59.8
Q ss_pred CCCceEeeecccccC--CccchhHHHHhhhcCCCCcccEEEEeeeeee-CCCcccccccceeccccccccccCccccC
Q psy13464 421 GGQVDLHTGGIDLKF--PHHENEEAQSCAFHNQSQWVNYWLHTGHLRG-TDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 421 G~~~DIH~GG~DL~F--PHHENEiAQsea~~g~~~~a~yWlH~G~v~v-~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
..+.|+|..|.|+++ .|. -+.++.+++|..|+.+.++| |+|.. +|+|||||+||+|+|.++++. ||+|+.|
T Consensus 581 ~~PaD~~~eG~Di~rgWF~s--~ll~s~~~~~~~P~k~V~~H-G~vld~~G~KMSKSlGNvIdP~~ii~~-yGaD~lR 654 (961)
T PRK13804 581 KWPADLYLEGSDQHRGWFNS--SLLESCGTRGRAPYKAVLTH-GFTLDEKGEKMSKSLGNTVSPQDVIKQ-SGADILR 654 (961)
T ss_pred CCCceEEEEEcccccHHHHH--HHHHHHHhcCCCChhhEEEe-ccEECCCCCCccCCCCCcCCHHHHHHh-cCHHHHH
Confidence 345799999999996 566 46777777786666799999 77775 999999999999999999999 9999654
No 51
>PLN02286 arginine-tRNA ligase
Probab=99.61 E-value=1e-14 Score=160.33 Aligned_cols=149 Identities=9% Similarity=-0.031 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCCCcceecccCCCCCccCccc
Q psy13464 300 FRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWGRNENITQHAVKR 379 (515)
Q Consensus 300 ~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~~YG~Ls~~~~~~t~~~~Kr 379 (515)
....++|.+++++|||.+ |.. -.|.+-+.+.++++.|.++|++|+ ++|.++++++.+..--.|.++|+ +..|..+
T Consensus 239 ~~~~~~~~~~y~~l~V~f-d~~-ges~y~~~~~~vi~~L~~~g~~~e-~dGa~~v~l~~~~~~~vl~ksDG--t~tY~t~ 313 (576)
T PLN02286 239 EISRREFEKVYQRLRVEL-EEK-GESFYNPYIPGVIEELESKGLVVE-SDGARVIFVEGFDIPLIVVKSDG--GFNYAST 313 (576)
T ss_pred HHHHHHHHHHHHHhCCee-eec-CchhhhhhHHHHHHHHHHCCCEEe-eCCceEeeccCCCCceEEEECCC--chhhHHH
Confidence 337899999999999997 763 444566678999999999999998 89999998876644456888998 7789899
Q ss_pred CccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhh---cCCCCc--
Q psy13464 380 SPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAF---HNQSQW-- 454 (515)
Q Consensus 380 ~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~---~g~~~~-- 454 (515)
| +.+++||.... +.+..|.+-|.|+.-. ..|..++ .|..+.
T Consensus 314 D-IA~~~~k~~~~----------------------------~~d~~IyVvg~~q~~h-----f~~v~~~l~~lG~~~~~~ 359 (576)
T PLN02286 314 D-LAALWYRLNEE----------------------------KAEWIIYVTDVGQQQH-----FDMVFKAAKRAGWLPEDT 359 (576)
T ss_pred H-HHHHHHHHhcc----------------------------CCCEEEEEEeCcHHHH-----HHHHHHHHHHcCCCcccc
Confidence 9 99999997531 3466788889987542 2244333 253212
Q ss_pred c-cE-EEEeeeee-eCCCcccccccceecccccccc
Q psy13464 455 V-NY-WLHTGHLR-GTDGTRRLRAARFITNLSGSTI 487 (515)
Q Consensus 455 a-~y-WlH~G~v~-v~G~KMSks~Gnfit~~~li~~ 487 (515)
+ +. ++-+|+|. .+|+|||||.||+|+++||++.
T Consensus 360 ~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dllde 395 (576)
T PLN02286 360 YPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDE 395 (576)
T ss_pred CCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHH
Confidence 2 45 88889996 6788999999999999999996
No 52
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.60 E-value=5.5e-15 Score=153.53 Aligned_cols=148 Identities=17% Similarity=0.119 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHcCCCCCcccccccc--cHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC--CcceecccCCCCCccCc
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSE--FIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP--HYFKLWGRNENITQHAV 377 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTe--hI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~--~YG~Ls~~~~~~t~~~~ 377 (515)
..+...+++.+|+|.. |++...+| +-+.+.+++++|.++|++|+ ++|.++++++++. ..-.|.++|+ +..|.
T Consensus 147 ~~~~~k~~l~~l~i~f-Dv~~~E~Es~~~~~v~~vl~~L~e~g~~~~-~dGa~~i~~~~~g~~k~~Vl~ksDG--t~~Y~ 222 (354)
T PF00750_consen 147 ILEWSKETLQRLYIRF-DVWFDESESFYSGKVDEVLERLKEKGLLYE-SDGALWIDLTKFGDDKDRVLRKSDG--TSTYL 222 (354)
T ss_dssp HHHHHHHHHHHTT----SEEEEHCHHHHTTHHHHHHHHHHCTTTEEE-ETTEEEEEGCCTSTSS-EEEEETTS--EB-HH
T ss_pred HHHHHHHHHHHHHHHh-CcCcccchhhhhhHHHHHHHHHHhCCcEEe-cCCcEEEechhcCCCCcceEEcCCC--ceEEE
Confidence 5678899999999998 99987776 44578999999999999998 8999999999752 2338899999 88888
Q ss_pred ccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhc---CCCCc
Q psy13464 378 KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFH---NQSQW 454 (515)
Q Consensus 378 Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~---g~~~~ 454 (515)
.|| +..++||... .+.+..|.+-|.|+...-. |..++. |..+.
T Consensus 223 trD-iA~~~~r~~~----------------------------~~~d~~iyV~~~~q~~hf~-----~l~~~l~~lg~~~~ 268 (354)
T PF00750_consen 223 TRD-IAYHLYRFEE----------------------------YGFDKIIYVVGADQKGHFK-----QLFAILEALGYDPE 268 (354)
T ss_dssp HHH-HHHHHHHHCC----------------------------SS-SEEEEEEEGGGHHHHH-----HHHHHHHHTT-HHH
T ss_pred cch-HHHHHHHHhh----------------------------hccccEEEEecCchhhHHH-----HHHHHHHHhCCCCC
Confidence 888 8999999742 2446679999999875322 444433 53222
Q ss_pred c-cE-EEEeeeeeeCCCc--ccccccceecccccccc
Q psy13464 455 V-NY-WLHTGHLRGTDGT--RRLRAARFITNLSGSTI 487 (515)
Q Consensus 455 a-~y-WlH~G~v~v~G~K--MSks~Gnfit~~~li~~ 487 (515)
+ +. ++..|++..+++| ||+|+||+|++++++++
T Consensus 269 ~~~~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde 305 (354)
T PF00750_consen 269 AVKLQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDE 305 (354)
T ss_dssp HCTEEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHH
T ss_pred CCEEEEEEEEEEEcCCCCccccCCCCCceEHHHHHHH
Confidence 2 44 5677888666555 99999999999999995
No 53
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.60 E-value=3.7e-15 Score=172.60 Aligned_cols=52 Identities=17% Similarity=0.093 Sum_probs=45.2
Q ss_pred eEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHH
Q psy13464 54 KWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKII 106 (515)
Q Consensus 54 ~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi 106 (515)
-+..-=|+|.+.+||||+++++..|++.||.| +.|++|.++.|.+.++-.+.
T Consensus 63 ~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~r-m~G~~v~~~~G~D~~Gl~~~ 114 (995)
T PTZ00419 63 VIVLPPPNVTGYLHIGHALTGAIQDSLIRYHR-MKGDETLWVPGTDHAGIATQ 114 (995)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHH-hcCCcccCCCCCCCCchhhH
Confidence 33333488889999999999999999999999 99999999999999986553
No 54
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.59 E-value=4.7e-15 Score=163.49 Aligned_cols=72 Identities=17% Similarity=0.074 Sum_probs=58.9
Q ss_pred CCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeee-eCCCcccccccceeccccccccccCccccC
Q psy13464 422 GQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR-GTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 422 ~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~-v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
.+.|+-++|.|+++.|.-.-+..+.+++++.||.+..+| |+|. -+|+|||||+||+|+|.+++++ ||+|+.|
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~-yGaD~lR 585 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITH-GFVLDEDGRKMSKSKGNVIDPEDIIEK-YGADALR 585 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE---EEETTSSB-BTTTTB--BHHHHHHH-T-HHHHH
T ss_pred CCcccccCCccchhhHHHHhHhhccccccCCchheeeec-ccccccceeecccCCCcccCHHHHHHH-hCcHHHH
Confidence 367999999999999999999999999988888777777 8876 5799999999999999999999 9999765
No 55
>PLN02882 aminoacyl-tRNA ligase
Probab=99.58 E-value=1e-14 Score=170.93 Aligned_cols=71 Identities=11% Similarity=0.079 Sum_probs=57.5
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeee-CCCcccccccceeccccccccccCccccC
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRG-TDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v-~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
+.|+|+-|.|+++-+--.-++.+.+++|..++ +.++.+|+|.. +|+|||||+||+|+|.++++. ||+|+.|
T Consensus 567 PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pf-k~VivhG~vlde~G~KMSKSlGNvIdP~evi~~-YGADaLR 638 (1159)
T PLN02882 567 PADFVAEGLDQTRGWFYTLMVLSTALFDKPAF-KNLICNGLVLAEDGKKMSKSLKNYPDPNEVIDK-YGADALR 638 (1159)
T ss_pred CceEEEEecchhhhHHHHHHHHHHHhcCCCCc-ceeEEccEEECCCCCCcccCCCCCCCHHHHHHH-hCcHHHH
Confidence 47888999999886543345567777786554 66666699999 799999999999999999999 9999765
No 56
>PLN02381 valyl-tRNA synthetase
Probab=99.56 E-value=1.9e-14 Score=167.70 Aligned_cols=56 Identities=20% Similarity=0.127 Sum_probs=48.6
Q ss_pred eEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHH
Q psy13464 54 KWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKAN 110 (515)
Q Consensus 54 ~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~ 110 (515)
-+..-=|+|.+.+|||||++++..|++.||.| +.|++|.+++|.+.++-++-..++
T Consensus 131 ~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~r-m~G~~vl~~~G~D~~Glp~e~~ve 186 (1066)
T PLN02381 131 VIVLPPPNVTGALHIGHALTAAIEDTIIRWKR-MSGYNALWVPGVDHAGIATQVVVE 186 (1066)
T ss_pred EEEeCCCCCCCCccHHHHHHHHHHHHHHHHHH-hCCCcccccCCCCCCcChHHHHHH
Confidence 33444477889999999999999999999999 999999999999999988866554
No 57
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.51 E-value=1.4e-13 Score=149.67 Aligned_cols=48 Identities=25% Similarity=0.133 Sum_probs=45.3
Q ss_pred eEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcc
Q psy13464 54 KWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDID 102 (515)
Q Consensus 54 ~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiD 102 (515)
-.-.||-++.+.+||||+|.++.+|+++|+|+ ..|.+|.+|...+|.|
T Consensus 20 ~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r-~~g~~~~~i~~~Dd~D 67 (515)
T TIGR00467 20 YTVASGITPSGHIHIGNFREVITADAIARALR-DSGSEARFIYIADNYD 67 (515)
T ss_pred EEEecCCCCCCCccccchhhhhHHHHHHHHHH-HcCCCEEEEEEEcCCc
Confidence 45689999999999999999999999999999 7999999999999998
No 58
>KOG2007|consensus
Probab=99.37 E-value=1.7e-13 Score=146.34 Aligned_cols=45 Identities=44% Similarity=0.739 Sum_probs=44.1
Q ss_pred cccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhc
Q psy13464 141 PTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKAN 185 (515)
Q Consensus 141 ~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~ 185 (515)
.|+||||+||++|++||+|++||||++.+||||||||||||+||+
T Consensus 69 SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr 113 (586)
T KOG2007|consen 69 SHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRAR 113 (586)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhh
Confidence 599999999999999999999999999999999999999999988
No 59
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.37 E-value=3.1e-12 Score=145.67 Aligned_cols=58 Identities=17% Similarity=0.068 Sum_probs=52.4
Q ss_pred eEEEcCC--ccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhh
Q psy13464 54 KWYACGP--TVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSL 112 (515)
Q Consensus 54 ~~y~cgp--tvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l 112 (515)
++|+|.+ ++++.+||||+++|+..|+++||+| +.|++|.|++|.++++.+|..+|++.
T Consensus 33 ~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~r-m~G~~V~~~~G~D~~Glpie~~a~~~ 92 (805)
T PRK00390 33 KYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKR-MQGYNVLHPMGWDAFGLPAENAAIKT 92 (805)
T ss_pred CEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHH-hcCCcccccCccCCCCCHHHHHHHHc
Confidence 6888884 4459999999999999999999999 99999999999999999998877653
No 60
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.31 E-value=1.2e-11 Score=141.45 Aligned_cols=60 Identities=17% Similarity=0.126 Sum_probs=53.5
Q ss_pred ceeEEEcC--CccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhh
Q psy13464 52 HLKWYACG--PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSL 112 (515)
Q Consensus 52 ~v~~y~cg--ptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l 112 (515)
+-++|++. |++++.+||||+++|+..|++.||+| +.|++|.|++|.++++.+|..+|.+.
T Consensus 28 k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~r-m~G~~V~~~~G~D~~Glpie~~a~~~ 89 (842)
T TIGR00396 28 KPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYR-MKGYNVLHPMGWDAFGLPAENAAIKR 89 (842)
T ss_pred CCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHH-hcCCceeccCCcCCCChHHHHHHHHc
Confidence 34588886 55569999999999999999999999 99999999999999999999888653
No 61
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.8e-11 Score=137.48 Aligned_cols=96 Identities=18% Similarity=0.268 Sum_probs=78.4
Q ss_pred CcccCC--CCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCCCcc
Q psy13464 395 PWYESA--WGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTDGTR 471 (515)
Q Consensus 395 p~W~Sp--wG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G~KM 471 (515)
+.|.|. |..---||.=+ +....+|. +-|+-+-|-|.+|-=--.=+.++...+|+.||-...+| |.| .=+|+||
T Consensus 451 DTWFSS~LwPfstlgWp~~-t~~l~~fy--Pt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ih-GLVrDe~G~KM 526 (877)
T COG0525 451 DTWFSSSLWPFSTLGWPEE-TPDLKKFY--PTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIH-GLVRDEQGRKM 526 (877)
T ss_pred hhhhhcccccccccCCCCc-chHHHhcC--CCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEe-eeEEcCCCCCC
Confidence 367764 88888999887 54555554 66888889999998777777788888888888888999 666 5568999
Q ss_pred cccccceeccccccccccCccccC
Q psy13464 472 RLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 472 Sks~Gnfit~~~li~~~y~~D~~~ 495 (515)
|||+||+|+|.++|+. ||+|++|
T Consensus 527 SKS~GNvIDP~d~I~~-yGaDAlR 549 (877)
T COG0525 527 SKSKGNVIDPLDVIDK-YGADALR 549 (877)
T ss_pred cccCCCcCCHHHHHHH-hChHHHH
Confidence 9999999999999999 9999654
No 62
>PLN02959 aminoacyl-tRNA ligase
Probab=99.10 E-value=3.4e-11 Score=140.99 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=69.2
Q ss_pred CCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccCC
Q psy13464 422 GQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 422 ~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
.+.|+.++|.||+|.|....+..+.+.+|..||++.++.+|||..+|+|||||+||+|+|.+++++ ||+|+.|-
T Consensus 670 yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~k-yGADalRl 743 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEE-FSADATRF 743 (1084)
T ss_pred CCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHH-hCchHHHH
Confidence 589999999999999999999999999998899887888899999999999999999999999999 99997654
No 63
>PLN02563 aminoacyl-tRNA ligase
Probab=99.08 E-value=4.9e-10 Score=129.89 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=52.7
Q ss_pred CceeEEE-cC-CccCCC-CCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhh
Q psy13464 51 NHLKWYA-CG-PTVYDS-PHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSL 112 (515)
Q Consensus 51 ~~v~~y~-cg-ptvyd~-~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l 112 (515)
++-+.|+ +| |.+++. +||||+++|+..|+++||.| +.|++|.|++|.+.++-+|-+.|.+.
T Consensus 108 ~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~R-m~G~~Vl~~~G~D~~GlPiE~~a~~~ 171 (963)
T PLN02563 108 SKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKR-MQGYNVLHPMGWDAFGLPAEQYAIET 171 (963)
T ss_pred CCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHH-hcCCeecccccccccCcHHHHHHHHc
Confidence 3445664 45 788886 99999999999999999999 99999999999999999998777654
No 64
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=98.92 E-value=4.9e-10 Score=125.33 Aligned_cols=44 Identities=50% Similarity=0.756 Sum_probs=42.3
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
-+||||||+||+.|++||+|++|+||++.+|||+||+|||||.+
T Consensus 73 ~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~ 116 (651)
T PTZ00399 73 SSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKR 116 (651)
T ss_pred CcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHH
Confidence 47999999999999999999999999999999999999999975
No 65
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=98.87 E-value=5.9e-09 Score=114.74 Aligned_cols=178 Identities=17% Similarity=0.143 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC-C-----CCc-ce---eccc---
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS-F-----PHY-FK---LWGR--- 368 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~-~-----~~Y-G~---Ls~~--- 368 (515)
|.+.+++||+.|||. ||..+++|+|++.+.+++++|+++|+||.- |+..+ + ..| +. ++..
T Consensus 144 ~~~~I~edL~wLGi~-~d~~~~qSd~~~~y~~~a~~Li~~G~AY~C------~cs~eei~~~r~~g~~~~cR~~s~eenl 216 (560)
T TIGR00463 144 AYDMILEDLDWLGVK-GDEVVYQSDRIEEYYDYCRKLIEMGKAYVC------DCPPEEFRELRNDGVACACRDRSVEENL 216 (560)
T ss_pred HHHHHHHHHHHcCCC-CCccccccccHHHHHHHHHHHHHcCCceee------cCCHHHHHHHHhCCCCCCccCCCHHHHH
Confidence 779999999999999 599999999999999999999999999971 11111 0 001 00 1100
Q ss_pred -------CC---------CCCccC--cccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeec
Q psy13464 369 -------NE---------NITQHA--VKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGG 430 (515)
Q Consensus 369 -------~~---------~~t~~~--~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG 430 (515)
++ .+..+. .-.+-.||++++....-.+.-.+.| .+.|..|..|.. -....|-+-.|- |
T Consensus 217 ~~fe~m~~g~~~~~~~~lR~K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~-~~~PtYdfA~~V-DD~l~gITHviR--g 292 (560)
T TIGR00463 217 EIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDWVIFRINKTPHPRTGDKY-KVYPTMDFSVPI-DDHLLGVTHVLR--G 292 (560)
T ss_pred HHHHHHhcccccCCCeEEEEECCCcCCCccccCcEEEEecCCCccccCCEE-EEEeccccceEe-ecccCCCCeEEe--c
Confidence 00 000111 1112368888875422111111112 267887776542 222333333232 5
Q ss_pred ccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCC-ccccccc---------------ceeccccccccccCcccc
Q psy13464 431 IDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDG-TRRLRAA---------------RFITNLSGSTIGYTRDTC 494 (515)
Q Consensus 431 ~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~-KMSks~G---------------nfit~~~li~~~y~~D~~ 494 (515)
.|+.--- ...+....+. |-. . -.+.|.+++.+++. |+|||.. ...|+..+-.+||..++.
T Consensus 293 ~E~~~nT-~rq~yl~~~l-g~~-~-P~~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi 368 (560)
T TIGR00463 293 KDHIDNE-RKQQYIYMYF-GWE-L-PEFIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAI 368 (560)
T ss_pred hhhhcCC-HHHHHHHHHc-CCC-C-CeEEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHH
Confidence 6654310 1223333433 422 2 35889999999876 9998763 224677777777777644
No 66
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.85 E-value=4.4e-09 Score=110.22 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=45.9
Q ss_pred CCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhh--hcCCCCcccEEEEeeeeeeCCC-ccccccccee
Q psy13464 403 KGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCA--FHNQSQWVNYWLHTGHLRGTDG-TRRLRAARFI 479 (515)
Q Consensus 403 ~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea--~~g~~~~a~yWlH~G~v~v~G~-KMSks~Gnfi 479 (515)
.|--.|.+| =+|-..+| .+|.=..|.||.=|--....+.--| .+|.+++ +-+-++++.++|+ |||||+||.|
T Consensus 217 ~gKL~WkvD-W~mRW~~l--gVdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP--~~~~YE~~~~~g~~kmSsSkG~~~ 291 (360)
T PF01921_consen 217 NGKLQWKVD-WPMRWAAL--GVDFEPFGKDHASPGGSYDTSKRIAREILGYEPP--VPFPYEFFLDKGGGKMSSSKGNGI 291 (360)
T ss_dssp -EEE-HHHH-HHHHHHHT--T-SEEEEEHHHHCTTSHHHHHHHHHHHCC-------EEEEE--EEES-------------
T ss_pred cccccCCCc-Chhhhhhc--CceeccCCCccCCCCCChhhHHHHHHHHhCCCCC--CCCCeeEEEeCCCcccccCCCCcc
Confidence 344556655 35777778 5678888999998888888777666 4575544 6888899999998 9999999999
Q ss_pred ccccccccccCcc
Q psy13464 480 TNLSGSTIGYTRD 492 (515)
Q Consensus 480 t~~~li~~~y~~D 492 (515)
|+.+.++. +..+
T Consensus 292 t~~e~L~~-~~PE 303 (360)
T PF01921_consen 292 TPEEWLEY-APPE 303 (360)
T ss_dssp -HHHHHTT-S-HH
T ss_pred CHHHHHHh-cCHH
Confidence 99999988 5544
No 67
>KOG0437|consensus
Probab=98.84 E-value=7.7e-10 Score=122.74 Aligned_cols=82 Identities=20% Similarity=0.151 Sum_probs=73.8
Q ss_pred CCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccCC-----
Q psy13464 422 GQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCAG----- 496 (515)
Q Consensus 422 ~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~~----- 496 (515)
.++|+.++|.||+-.|...-+.-..|++..+.|++-.-.||||++|++|||||.|||.|+++.+++ ||+|++|-
T Consensus 662 YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieK-Fgad~tRlalAda 740 (1080)
T KOG0437|consen 662 YPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEK-FGADGTRLALADA 740 (1080)
T ss_pred cceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCeeeHHHHHHH-hCccceeeeeecc
Confidence 689999999999999999999999998876779988999999999999999999999999999999 99998774
Q ss_pred CCCCCCCC
Q psy13464 497 RTGPRCPN 504 (515)
Q Consensus 497 ~~~~~~~~ 504 (515)
|-|.+|-|
T Consensus 741 GD~veDAN 748 (1080)
T KOG0437|consen 741 GDGVEDAN 748 (1080)
T ss_pred cCCcccch
Confidence 44555555
No 68
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=98.80 E-value=1.2e-09 Score=111.85 Aligned_cols=44 Identities=39% Similarity=0.560 Sum_probs=38.1
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
..+||||||+||++|+++|.|+. +|+++.+|||+||||||||++
T Consensus 20 d~~HiGhaR~~v~~D~l~R~L~~-~g~~V~~V~NiTDiDDKii~~ 63 (300)
T PF01406_consen 20 DYAHIGHARTYVFFDVLRRYLEY-LGYDVTYVMNITDIDDKIIKR 63 (300)
T ss_dssp S--BHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEB-SSHHHHHH
T ss_pred CCCCCcceeeeeeHHHHHHHHHH-cCCeEEEEEeccccchHHHHH
Confidence 46899999999999999999997 999999999999999999964
No 69
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=4.4e-08 Score=111.68 Aligned_cols=74 Identities=18% Similarity=0.109 Sum_probs=65.2
Q ss_pred CCceEeeecccccCCccchhHHHHhhhcCCCCcccE-----EEEeeeeee-CCCcccccccceeccccccccccCccccC
Q psy13464 422 GQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNY-----WLHTGHLRG-TDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 422 ~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~y-----WlH~G~v~v-~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
.++|+-.||+||+=-|.-+-+--..|+++..-|+.= -+.+|||.. +|+|||||+||+|+|++.+++ ||+|++|
T Consensus 525 ~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~-yGADt~R 603 (814)
T COG0495 525 YPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEK-YGADTVR 603 (814)
T ss_pred cChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHH-hCchHHH
Confidence 468999999999999999999999999854334433 788899999 799999999999999999999 9999887
Q ss_pred C
Q psy13464 496 G 496 (515)
Q Consensus 496 ~ 496 (515)
-
T Consensus 604 l 604 (814)
T COG0495 604 L 604 (814)
T ss_pred H
Confidence 4
No 70
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=3.8e-09 Score=113.47 Aligned_cols=43 Identities=40% Similarity=0.576 Sum_probs=38.7
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
-+||||||+||++|.+||.|+.. ||.|.+|+||||||||||+|
T Consensus 35 ~~HIGhaRt~V~fDvl~R~L~~~-Gy~V~yV~NiTDIDDKIi~r 77 (464)
T COG0215 35 YAHIGHARTYVVFDVLRRYLRYL-GYKVTYVRNITDIDDKIINR 77 (464)
T ss_pred ccccccCcceehHHHHHHHHHHh-CCeEEEEeccccccHHHHHH
Confidence 47999999999999999999855 55599999999999999975
No 71
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=98.68 E-value=9.4e-08 Score=113.34 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=53.2
Q ss_pred eeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhh
Q psy13464 53 LKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSL 112 (515)
Q Consensus 53 v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l 112 (515)
-.+|.-=|++.+.+|+||+++++..|++.||.+ +.||+|.+.+|.+.++-+|...+++.
T Consensus 104 Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~r-m~G~~V~~~~GwD~hGlPiE~~vEk~ 162 (1205)
T PTZ00427 104 YIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFY-QCGFSVERKFGWDCHGLPIEYEIEKE 162 (1205)
T ss_pred EEEecCCCCCCCCcchhHHHHHHHHHHHHHHHH-cCCCeeccCCccCCCCcHHHHHHHHH
Confidence 455555589999999999999999999999999 99999999999999999999887653
No 72
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.64 E-value=2.2e-07 Score=100.75 Aligned_cols=161 Identities=15% Similarity=0.141 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHcCCCCCc-ccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC--------------CCCc-cee
Q psy13464 302 YELEYFESMEKFGVLPPT-RATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS--------------FPHY-FKL 365 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD-~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~--------------~~~Y-G~L 365 (515)
+.+.++++|+.||+.. | --.+-|++++...+++++|+++|.||. -|+..+ .+.| |.-
T Consensus 52 ~~~~i~~~L~wlGl~~-de~~~~QS~r~~~y~~~~~~L~~~g~aY~------C~ct~~~l~~~r~~~~~~~~~~~y~~~c 124 (470)
T TIGR00464 52 AEEAILEGLKWLGISW-DEGPYYQSQRLDIYKKYAKELLEEGLAYR------CYCSKERLERLREEQKANKETPRYDGRC 124 (470)
T ss_pred HHHHHHHHHHHCCCCC-CCCeeehhCCHHHHHHHHHHHHHcCCEEe------cCCChHHHHHHHHHHhhCCCCCCCCCCc
Confidence 7789999999999996 6 445788999999999999999999996 233222 1122 111
Q ss_pred cccCCCCCccC---------------------------------cccCccCccccccccCCCCcccCCCCCCCCCccccc
Q psy13464 366 WGRNENITQHA---------------------------------VKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIEC 412 (515)
Q Consensus 366 s~~~~~~t~~~---------------------------------~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiEC 412 (515)
++++.+... .-.+-.||+|.| ..|.|..|+-|
T Consensus 125 --r~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R-------------sdG~ptY~~A~ 189 (470)
T TIGR00464 125 --RNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVRGEITFQNSELDDFVILR-------------SDGSPTYNFAV 189 (470)
T ss_pred --ccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEecccceEEecCccCCCeEEEe-------------cCCCcccccHH
Confidence 111000000 001112333333 34788888655
Q ss_pred chhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeee-eeeCCCcccccccceeccccccccccCc
Q psy13464 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGH-LRGTDGTRRLRAARFITNLSGSTIGYTR 491 (515)
Q Consensus 413 SAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~-v~v~G~KMSks~Gnfit~~~li~~~y~~ 491 (515)
.. -....|.+..| -|.|+.- |-.--++..+++ |. +.++ +.|... |..+|.|||||.| .++++++.+.||..
T Consensus 190 ~v-dD~~~~ithvI--rG~d~~~-~t~~~~~l~~aL-g~-~~p~-~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p 261 (470)
T TIGR00464 190 VV-DDYLMKITHVI--RGEDHIS-NTPKQILIYQAL-GW-KIPV-FAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLP 261 (470)
T ss_pred HH-HHHhCCCCEEE--ECchhhc-CHHHHHHHHHHc-CC-CCCe-EEEEeeeecCCCccccccCC-CccHHHHHHCCCCH
Confidence 43 23334555555 6777654 222223444444 63 3334 555555 5678999999999 88999999998876
Q ss_pred c
Q psy13464 492 D 492 (515)
Q Consensus 492 D 492 (515)
.
T Consensus 262 ~ 262 (470)
T TIGR00464 262 E 262 (470)
T ss_pred H
Confidence 5
No 73
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=8.5e-09 Score=117.37 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=53.8
Q ss_pred eEEEcCCccC--CCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhh
Q psy13464 54 KWYACGPTVY--DSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSL 112 (515)
Q Consensus 54 ~~y~cgptvy--d~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l 112 (515)
+.|+.=|=+| +.+|+||.|+|...||++||.| +.||+|.|=|+.+--+-++.+.|.+.
T Consensus 35 Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykR-m~GyNVL~PMGwdafGlPae~~A~~~ 94 (814)
T COG0495 35 KFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKR-MQGYNVLHPMGWDAFGLPAENAAIKI 94 (814)
T ss_pred ceEEEeCCCCCCCCcccCccccccHHHHHHHHHH-hcCCeecccCcccccCchHHHHHHHh
Confidence 7888776665 7899999999999999999999 99999999999999999999999976
No 74
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=9.9e-07 Score=95.83 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=60.5
Q ss_pred CCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHH--HHhhhcCCCCcccEEEEeeeeeeCC-Ccccccccce
Q psy13464 402 GKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEA--QSCAFHNQSQWVNYWLHTGHLRGTD-GTRRLRAARF 478 (515)
Q Consensus 402 G~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiA--Qsea~~g~~~~a~yWlH~G~v~v~G-~KMSks~Gnf 478 (515)
|.|--.|.+|= +|-..+|| +|+---|.||.=+--..+-+ +++-.+|.+++. -+-++++++.| +|||+|+||+
T Consensus 211 g~~KL~WRvdW-p~RW~~lg--Vd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~--~~~YE~i~lkg~~~mSsSkG~~ 285 (521)
T COG1384 211 GEGKLPWRVDW-PMRWAALG--VDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPV--PFVYEWILLKGGGKMSSSKGNV 285 (521)
T ss_pred cCcccccCcCc-cchhhccC--cccccCCcccccccCchHHHHHHHHHhcCCCCCC--CCceEEEEecCCcccccCCCcE
Confidence 44445555552 46666774 56777799987766666544 344445755443 44568888988 8999999999
Q ss_pred eccccccccccCccccC
Q psy13464 479 ITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 479 it~~~li~~~y~~D~~~ 495 (515)
|+++|..+. +..+..|
T Consensus 286 i~~~dwlev-~~pE~lr 301 (521)
T COG1384 286 ISLSDWLEV-APPEVLR 301 (521)
T ss_pred EcHHHHHHh-cCHhHee
Confidence 999999998 6555443
No 75
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.59 E-value=2.9e-07 Score=100.84 Aligned_cols=178 Identities=14% Similarity=0.137 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC-CC---------Ccceec-----
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS-FP---------HYFKLW----- 366 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~-~~---------~YG~Ls----- 366 (515)
|.+.+.+||+.||+.. |...+.|++.+...++.++|+++|.||.- |+..+ +. .+-.++
T Consensus 62 ~~~~I~~dL~WLGl~w-D~~~~qSdr~~~y~~~a~~Li~~G~AY~C------~cs~eel~~~r~~~~~~~~R~~s~ee~l 134 (523)
T PLN03233 62 FEESIIEDLGKIEIKP-DSVSFTSDYFEPIRCYAIILIEEGLAYMD------DTPQEEMKKERADRAESKHRNQSPEEAL 134 (523)
T ss_pred HHHHHHHHHHHhCCCC-CCCccccccHHHHHHHHHHHHHcCCeEec------CCCHHHHHHHHhhhccCccccCCHHHHH
Confidence 7899999999999995 88889999999999999999999999971 11111 00 000000
Q ss_pred --------c-cC-C----C--CCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeec
Q psy13464 367 --------G-RN-E----N--ITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGG 430 (515)
Q Consensus 367 --------~-~~-~----~--~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG 430 (515)
+ .. . . ......-.+-.||++++....-.+-..+.| .|.|..|..|.. -....|-+-.| -|
T Consensus 135 ~~~~~m~~G~~~~~~~~lR~K~d~~~~n~~~~D~Vi~R~d~~~h~~~Gd~~-~~~PtY~fA~~V-DD~l~gITHvi--Rg 210 (523)
T PLN03233 135 EMFKEMCSGKEEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAY-KAYPTYDLACPI-VDSIEGVTHAL--RT 210 (523)
T ss_pred HHHHHHhcccccCCCeEEEEeCcccCCCCCCcCCEEEEEcCCcccccCCcc-cceeccCCceee-eccccCCCeEE--ec
Confidence 0 00 0 0 011111223368999986533334444555 788888876542 22223332222 24
Q ss_pred ccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCccccccc------cee---------ccccccccccCcccc
Q psy13464 431 IDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAA------RFI---------TNLSGSTIGYTRDTC 494 (515)
Q Consensus 431 ~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~G------nfi---------t~~~li~~~y~~D~~ 494 (515)
.|+.- +-.--+...+++ |- +.+.+ .|.++|.++|.|||||+. +.+ |+..+-++||..++.
T Consensus 211 ~E~~~-~t~~q~~l~~aL-g~-~~P~~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi 285 (523)
T PLN03233 211 TEYDD-RDAQFFWIQKAL-GL-RRPRI-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDAL 285 (523)
T ss_pred hhhhc-CCHHHHHHHHHh-CC-CCCee-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHH
Confidence 55432 222223333443 53 33555 779999999999999972 333 577788888877643
No 76
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.57 E-value=1.9e-07 Score=100.57 Aligned_cols=162 Identities=15% Similarity=0.071 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC--------------CCCcceecc
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS--------------FPHYFKLWG 367 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~--------------~~~YG~Ls~ 367 (515)
+.+.++++|+.|||.. |.+.+.|+.++.+.+++++|+++|+||. -|+..+ .+.|-.-.
T Consensus 53 ~~~~I~e~L~wLGI~~-De~y~QSer~~~y~~~~e~L~e~G~AY~------C~Ct~eel~~~r~~~~~~~~~~~y~~~c- 124 (445)
T PRK12558 53 YADAIAEDLKWLGINW-DRTFRQSDRFDRYDEAAEKLKAAGRLYP------CYETPEELELKRKIQLSRGLPPIYDRAA- 124 (445)
T ss_pred HHHHHHHHHHHcCCCC-CccccHHHHHHHHHHHHHHHHHCCCEEE------ecCchHHHHHHHHHHHhCCCCCCCCccc-
Confidence 6789999999999996 9899999999999999999999999996 233322 01121100
Q ss_pred cCCCCCccC----------------------------------cccCccCccccccccCCCCcccCCCCCCCCCcccccc
Q psy13464 368 RNENITQHA----------------------------------VKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413 (515)
Q Consensus 368 ~~~~~t~~~----------------------------------~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECS 413 (515)
++ ++... .-..-.||++.| ..|-|..|..|+
T Consensus 125 r~--l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R-------------~dg~PtY~fA~v 189 (445)
T PRK12558 125 LK--LTEEEKAALEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDAASLSDPVLIR-------------ADGSYLYTLPSV 189 (445)
T ss_pred cc--CCHHHHHhHHhcCCCceEEEecCCCceEEEEEeeeEeecccccCCCeEEEe-------------cCCCccccccce
Confidence 00 00000 000113444444 236688877654
Q ss_pred hhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeee-CCCcccccccceeccccccccccCcc
Q psy13464 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRG-TDGTRRLRAARFITNLSGSTIGYTRD 492 (515)
Q Consensus 414 AM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v-~G~KMSks~Gnfit~~~li~~~y~~D 492 (515)
.- ....|-+ --.-|.|++- .-.--+...+|+ |-.+ + -|.|-..+.- +|.|+|||.|. .++.++.+.||..+
T Consensus 190 VD-D~~m~IT--HViRG~d~l~-~t~~q~~l~~al-g~~~-P-~f~H~pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Pe 261 (445)
T PRK12558 190 VD-DIDMGIT--HIIRGEDHVT-NTAVQIQIFEAL-GAKP-P-VFAHLSLLTGADGKGLSKRLGG-LSIRSLREDGIEPM 261 (445)
T ss_pred ec-cccCCCC--EEEechhhhh-CCHHHHHHHHHh-CCCC-C-eEEEcccccCCCcccccccCCC-cCHHHHHHCCCCHH
Confidence 21 1112222 2223555442 111223444444 6332 3 4788888876 57789999986 68889999999988
Q ss_pred cc
Q psy13464 493 TC 494 (515)
Q Consensus 493 ~~ 494 (515)
+.
T Consensus 262 ai 263 (445)
T PRK12558 262 AI 263 (445)
T ss_pred HH
Confidence 54
No 77
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.52 E-value=4.2e-07 Score=90.87 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHcCCCCCcc---------cccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCCCcceecccCCCC
Q psy13464 302 YELEYFESMEKFGVLPPTR---------ATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWGRNENI 372 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~---------~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~~YG~Ls~~~~~~ 372 (515)
|.+.+.++++.|||.. |. .-+.|++++...++.++|+++|
T Consensus 52 ~~~~i~~dL~wlGl~~-d~~~~~~g~~~~~~QS~r~~~y~~~~~~L~~~g------------------------------ 100 (239)
T cd00808 52 AEEAILEALKWLGLDW-DEGPDVGGPYGPYRQSERLEIYRKYAEKLLEKG------------------------------ 100 (239)
T ss_pred HHHHHHHHHHHcCCCC-CcCCccCCCCCCEeeeCCHHHHHHHHHHHHHcC------------------------------
Confidence 6788999999999995 76 5578899999999999999988
Q ss_pred CccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCC
Q psy13464 373 TQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQS 452 (515)
Q Consensus 373 t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~ 452 (515)
.|.|..|+-+++--. ..| ++--.-|.|+. +|-+--++..+++ |.
T Consensus 101 ------------------------------dg~ptY~~a~~vDD~-~~~--ithViRG~D~~-~~t~~q~~l~~aL-g~- 144 (239)
T cd00808 101 ------------------------------DGFPTYHLANVVDDH-LMG--ITHVIRGEEHL-SSTPKQILLYEAL-GW- 144 (239)
T ss_pred ------------------------------CCCcccccHHHHhHH-hcC--CCEEEEChhhh-hChHHHHHHHHHc-CC-
Confidence 366666665554111 122 23334466653 2334445555555 64
Q ss_pred CcccEEEEeeee-eeCCCcccccccceeccccccccccCcccc
Q psy13464 453 QWVNYWLHTGHL-RGTDGTRRLRAARFITNLSGSTIGYTRDTC 494 (515)
Q Consensus 453 ~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~li~~~y~~D~~ 494 (515)
+.+.|+ |...| ..+|.|||||.|+ .++..+.+.||...+.
T Consensus 145 ~~p~~~-h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai 185 (239)
T cd00808 145 EPPKFA-HLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEAL 185 (239)
T ss_pred CCCceE-eeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHH
Confidence 334555 55554 8899999999999 7999999998887643
No 78
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.46 E-value=2.1e-06 Score=93.31 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCCCCCccc--------ccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC--------------C
Q psy13464 302 YELEYFESMEKFGVLPPTRA--------TRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS--------------F 359 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~--------pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~--------------~ 359 (515)
+.+.++++|+.||+.. |.- -+-|+..+...+++++|+++|+||. -|+..+ -
T Consensus 55 ~~~~i~~~L~wlGl~~-De~p~~~~~gpy~QS~r~~~y~~~~~~L~~~g~aY~------C~cs~eel~~~r~~~~~~~~~ 127 (476)
T PRK01406 55 AEEAILEGLKWLGLDW-DEGPDGGPYGPYRQSERLDIYKEYAEQLLEEGKAYY------CYCTPEELEAMREEQRAAGEP 127 (476)
T ss_pred HHHHHHHHHHHCCCCC-CCCCccCCCCceehhcCHHHHHHHHHHHHHcCCeee------cCCCHHHHHHHHHHHHhCCCC
Confidence 7789999999999985 654 4788999999999999999999996 232221 0
Q ss_pred CCcceecccCCCCCcc-----C----------------------------cccCccCccccccccCCCCcccCCCCCCCC
Q psy13464 360 PHYFKLWGRNENITQH-----A----------------------------VKRSPFDFALWKSAKPGEPWYESAWGKGRP 406 (515)
Q Consensus 360 ~~YG~Ls~~~~~~t~~-----~----------------------------~Kr~~~DFaLWK~~~~gep~W~SpwG~GRP 406 (515)
+.|-.-. ++++.+.. . .-.+-.||+|+|. .|-|
T Consensus 128 ~~y~~~c-r~~~~~~~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~Rs-------------DG~p 193 (476)
T PRK01406 128 PRYDGRC-RDLTKEEVAARLAAGEPPVIRFKVPDEGEVVFDDLVRGEIEFPNSELDDFVILRS-------------DGTP 193 (476)
T ss_pred CCCCccc-cCCCHHHHHHHHhCCCCeeEEEEcCCCCceEEEEeccceEEeccccCCCcEEEec-------------CCCc
Confidence 1121100 00100000 0 0000124555443 5678
Q ss_pred CcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCCCcccccccceecccccc
Q psy13464 407 GWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTDGTRRLRAARFITNLSGS 485 (515)
Q Consensus 407 GWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~li 485 (515)
..|.-+. ......|-+-.| -|.|++- |-.--++..+|+ |.. .+ .|.|..++ ..+|.|||||.| .++++++.
T Consensus 194 tY~~a~v-VdD~~~~ithvI--rG~d~~~-~t~~q~~l~~al-G~~-~p-~~~H~pli~~~~g~klSKR~g-~~~l~~l~ 265 (476)
T PRK01406 194 TYNFAVV-VDDHLMGITHVI--RGEDHLS-NTPKQILLYEAL-GWE-VP-VFAHLPLILGPDGKKLSKRHG-ATSVEQYR 265 (476)
T ss_pred cccchHH-HHHHHcCCCEEE--ECchhhc-CHHHHHHHHHHh-CCC-CC-eEEEeeeeeCCCCCcccCcCC-ccCHHHHH
Confidence 8776554 233344555555 6788543 111123334443 632 23 46666664 788999999999 78999999
Q ss_pred ccccCcc
Q psy13464 486 TIGYTRD 492 (515)
Q Consensus 486 ~~~y~~D 492 (515)
+.||-..
T Consensus 266 ~~G~~p~ 272 (476)
T PRK01406 266 DMGYLPE 272 (476)
T ss_pred HCCCCHH
Confidence 9988664
No 79
>PLN02959 aminoacyl-tRNA ligase
Probab=98.44 E-value=1.8e-06 Score=101.96 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=54.1
Q ss_pred eeEEEcC--CccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhh
Q psy13464 53 LKWYACG--PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLK 113 (515)
Q Consensus 53 v~~y~cg--ptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~ 113 (515)
-+.++.+ |.+++.+||||+++++..|++.||.| +.|++|.|.++.+..+-.|...|+++.
T Consensus 45 ~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykr-m~G~~vlfp~G~d~tGlPIe~~aek~~ 106 (1084)
T PLN02959 45 EKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHR-LRGANVLLPFAFHCTGMPIKASADKLA 106 (1084)
T ss_pred CcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHH-cCCCccCCCCCcCCCCccHHHHHHHHH
Confidence 3455555 77789999999999999999999999 999999999999999999999998874
No 80
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=98.44 E-value=1e-07 Score=113.06 Aligned_cols=73 Identities=14% Similarity=0.053 Sum_probs=65.9
Q ss_pred CCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeee-CCCcccccccceeccccccccccCccccCC
Q psy13464 422 GQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRG-TDGTRRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 422 ~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v-~G~KMSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
.+.|+-+=|.|++|-+=-.-+..+.+++|+.||-+..+| |||.- +|+|||||+||+|+|.+++++ ||+|+.|=
T Consensus 672 fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvH-G~Vld~dG~KMSKSlGNvIDP~evI~k-YGADaLR~ 745 (1205)
T PTZ00427 672 FPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICN-GLVLASDGKKMSKRLKNYPDPLYILDK-YGADSLRL 745 (1205)
T ss_pred CCceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEc-cEEEcCCCCCcccCCCCCCCHHHHHHh-cCCcHHHH
Confidence 367999999999999998889999999998777788999 99986 999999999999999999999 99997653
No 81
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.43 E-value=1.3e-06 Score=87.05 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCCCCCcc-cccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCCCcceecccCCCCCccCcccC
Q psy13464 302 YELEYFESMEKFGVLPPTR-ATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWGRNENITQHAVKRS 380 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~-~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~~YG~Ls~~~~~~t~~~~Kr~ 380 (515)
|.+.+.+|++.||+.. |. -.+.|++++...+..++|+++|
T Consensus 52 ~~~~I~~dL~wlGl~w-d~~~~~QS~r~~~y~~~~~~L~~~g-------------------------------------- 92 (230)
T cd00418 52 YVESILEDLKWLGLDW-DEGPYRQSDRFDLYRAYAEELIKKG-------------------------------------- 92 (230)
T ss_pred HHHHHHHHHHHcCCCC-CCCeeehhcCHHHHHHHHHHHHHcC--------------------------------------
Confidence 6789999999999996 65 5688899999999999999999
Q ss_pred ccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEE
Q psy13464 381 PFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLH 460 (515)
Q Consensus 381 ~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH 460 (515)
|.|..|+.|+. -....| ++--.-|.||.- ...--+...+++ |. +.+ .+.|
T Consensus 93 -----------------------g~p~Y~la~vv-DD~~~g--IThViRG~D~l~-st~~q~~l~~~L-g~-~~P-~~~H 142 (230)
T cd00418 93 -----------------------GYPLYNFVHPV-DDALMG--ITHVLRGEDHLD-NTPIQDWLYEAL-GW-EPP-RFYH 142 (230)
T ss_pred -----------------------CCccccccccc-cccccC--CCEEEECHhhhh-chHHHHHHHHHc-CC-CCC-eEEE
Confidence 45555544331 111223 333344777653 222223344444 54 334 3678
Q ss_pred eeeeeeC-CCcccccccceeccccccccccCcccc
Q psy13464 461 TGHLRGT-DGTRRLRAARFITNLSGSTIGYTRDTC 494 (515)
Q Consensus 461 ~G~v~v~-G~KMSks~Gnfit~~~li~~~y~~D~~ 494 (515)
...|..+ |+|||||.|+ .|+.++.++||..++.
T Consensus 143 ~pll~~~~g~KLSKr~~~-~~i~~~r~~G~~p~ai 176 (230)
T cd00418 143 FPRLLLEDGTKLSKRKLN-TTLRALRRRGYLPEAL 176 (230)
T ss_pred eeeeeCCCCCCccCcCCC-cCHHHHHHCCCcHHHH
Confidence 8888665 5899999998 7889999999988743
No 82
>PLN02907 glutamate-tRNA ligase
Probab=98.43 E-value=2.4e-06 Score=97.07 Aligned_cols=157 Identities=15% Similarity=0.171 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC-----CcceecccCCC-----
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP-----HYFKLWGRNEN----- 371 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~-----~YG~Ls~~~~~----- 371 (515)
|.+.+.+|++-||+.. |...+.|++.+...++..+|+++|.||.. +- ..+.+. .|-.-. ++.+
T Consensus 264 ~~~~I~~dl~wLG~~~-d~~~~qS~r~~~y~~~a~~Li~~G~aY~~-~~----~~~~~~~~~~~~~~~~~-R~~~~ee~~ 336 (722)
T PLN02907 264 FVENILKDIETLGIKY-DAVTYTSDYFPQLMEMAEKLIKEGKAYVD-DT----PREQMRKERMDGIESKC-RNNSVEENL 336 (722)
T ss_pred HHHHHHHHHHHcCCCC-CCcccccccHHHHHHHHHHHHHcCCeeec-CC----CHHHHHHHHhcCCCCCc-cCCCHHHHH
Confidence 7899999999999996 88889999999999999999999999972 10 001110 110000 0100
Q ss_pred -------------------CCccCccc--CccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeec
Q psy13464 372 -------------------ITQHAVKR--SPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGG 430 (515)
Q Consensus 372 -------------------~t~~~~Kr--~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG 430 (515)
...+.... +-.|+++.+....-.+.+.+.| .+.|..|..|.. .....|-+-.|- |
T Consensus 337 ~~~~~m~~g~~~~~~~~lR~k~d~~~~n~~~~D~v~~R~~~~~h~~~gd~~-~~~PtY~fa~~v-dD~~~gIThvlR--g 412 (722)
T PLN02907 337 RLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKY-KVYPTYDFACPF-VDALEGVTHALR--S 412 (722)
T ss_pred HHHHHHhcccccCCCeEEEEEcccCCCCCCcccCEEEEecCCcccccCCcc-ceeeccCCceEE-EcccCCCceEee--c
Confidence 00111111 2368888886543345555666 788988876642 222222222222 3
Q ss_pred ccccCCccchhHHHHhhh--cCCCCcccEEEEeeeeeeCCCcccccc
Q psy13464 431 IDLKFPHHENEEAQSCAF--HNQSQWVNYWLHTGHLRGTDGTRRLRA 475 (515)
Q Consensus 431 ~DL~FPHHENEiAQsea~--~g~~~~a~yWlH~G~v~v~G~KMSks~ 475 (515)
.| |..|-.-|...+ +|- +.+ +..|.+||+++|.|||||+
T Consensus 413 ~e----~~~~t~~q~~l~~~lg~-~~p-~~~~f~~l~~~~~~lSKR~ 453 (722)
T PLN02907 413 SE----YHDRNAQYYRILEDMGL-RKV-HIWEFSRLNFVYTLLSKRK 453 (722)
T ss_pred Hh----hhhChHHHHHHHHHcCC-CCC-eeEEEEEEcCCCccccccc
Confidence 33 333333333322 253 233 4567789999999999999
No 83
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.40 E-value=4.1e-06 Score=91.81 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHcCCCCCc-ccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC--------------CCCcceec
Q psy13464 302 YELEYFESMEKFGVLPPT-RATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS--------------FPHYFKLW 366 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD-~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~--------------~~~YG~Ls 366 (515)
+.+.++++|+.||+.. | -.-+-|+.++...++.++|+++|.||. -|+..+ .+.|-...
T Consensus 55 ~~~~i~~~L~WLGl~w-De~py~QSeR~~~Y~~~a~~Li~~G~AY~------CfCt~eel~~~r~~~~~~~~~~~Y~~~c 127 (513)
T PRK14895 55 AVEAIFSGLKWLGLDW-NGEVIFQSKRNNLYKEAALKLLQNGKAYY------CFTRQEEIERQRQQALENKQHFIFNSEW 127 (513)
T ss_pred HHHHHHHHHHHcCCCC-CCCceeEeCcHHHHHHHHHHHHHcCCeEE------ecCcHHHHHHHHHhhhccCCCCCCChhh
Confidence 7789999999999996 6 345788999999999999999999996 233322 01121111
Q ss_pred ccCCCCCccCcccCccCcccccccc------------CCCCcccCC--------CCCCCCCcccccchhhhhhcCCCceE
Q psy13464 367 GRNENITQHAVKRSPFDFALWKSAK------------PGEPWYESA--------WGKGRPGWHIECSAMASHFFGGQVDL 426 (515)
Q Consensus 367 ~~~~~~t~~~~Kr~~~DFaLWK~~~------------~gep~W~Sp--------wG~GRPGWHiECSAM~~~~lG~~~DI 426 (515)
+ + ++....+ +...+ -|.... .|+..++.+ -..|-|..|.-+. .-....|.+-.|
T Consensus 128 r-~--~~~~~~~-~~~~~-~iR~k~p~~~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~v-VDD~~m~ithVI 201 (513)
T PRK14895 128 R-D--KDPSIYP-TDIKP-VIRLKTPREGSITIHDTLQGEVVIENSHIDDMVLLRADGTATYMLAVV-VDDHDMGITHII 201 (513)
T ss_pred c-c--cChhhhh-cCCCe-eEEEEcCCCCceEEEeecccceecccccCCCcEEEEeCCCcchhhHHH-HHHHhcCCCEEE
Confidence 0 0 0100000 00111 121111 112111110 1346688887633 222334555555
Q ss_pred eeecccccC--CccchhHHHHhhhcCCCCcccEEEEeeeee-eCCCcccccccceeccccccccccCccc
Q psy13464 427 HTGGIDLKF--PHHENEEAQSCAFHNQSQWVNYWLHTGHLR-GTDGTRRLRAARFITNLSGSTIGYTRDT 493 (515)
Q Consensus 427 H~GG~DL~F--PHHENEiAQsea~~g~~~~a~yWlH~G~v~-v~G~KMSks~Gnfit~~~li~~~y~~D~ 493 (515)
-|.|+.- |.| ++..+|+ |.. +--|.|...|. .+|.|||||.|.. .+.++-+.||...+
T Consensus 202 --RG~d~~~~t~~q---~~l~~aL-G~~--~p~~~H~plv~~~~g~KLSKR~g~~-~i~~~r~~G~~Pea 262 (513)
T PRK14895 202 --RGDDHLTNAARQ---LAIYQAF-GYA--VPSMTHIPLIHGADGAKLSKRHGAL-GIEAYKDMGYLPES 262 (513)
T ss_pred --ECchHhhhHHHH---HHHHHHc-CCC--CCeEEEEEeEEcCCCCccccccCch-hHHHHHHCCCCHHH
Confidence 6777543 222 3444443 632 23588889997 9999999999963 66788888888774
No 84
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.40 E-value=1.4e-06 Score=95.94 Aligned_cols=176 Identities=13% Similarity=0.064 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC-C---C----Ccceecc-cCCC-
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS-F---P----HYFKLWG-RNEN- 371 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~-~---~----~YG~Ls~-~~~~- 371 (515)
|.+.+.+||+.||+...+...+.|++.+.+.++.++|+++|.||. - |+..+ + . ..|.=++ ++.+
T Consensus 80 ~~~~I~~dL~wLGi~~d~~~~~qS~r~~~~y~~a~~Li~~G~AY~-c-----~cs~eei~~~R~~~~~~g~~~~~R~~s~ 153 (554)
T PRK05347 80 YVDSIKEDVRWLGFDWSGELRYASDYFDQLYEYAVELIKKGKAYV-D-----DLSAEEIREYRGTLTEPGKNSPYRDRSV 153 (554)
T ss_pred HHHHHHHHHHHcCCCCCCCceeeecCHHHHHHHHHHHHHcCCEee-C-----CCCHHHHHHHhhhhhhcCCCCCccCCCH
Confidence 779999999999999645667889999999999999999999997 1 22211 0 0 1121111 0110
Q ss_pred ---C--------------------CccCcccCc--cCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceE
Q psy13464 372 ---I--------------------TQHAVKRSP--FDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDL 426 (515)
Q Consensus 372 ---~--------------------t~~~~Kr~~--~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DI 426 (515)
+ ..+-.-.|+ +|+++.+.-..-.|-=.+.| .+.|..|..| .+|=
T Consensus 154 eenl~~~~~m~~G~~~~g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~-~iyPtYdfA~----------~vdD 222 (554)
T PRK05347 154 EENLDLFERMRAGEFPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKW-CIYPMYDFAH----------CISD 222 (554)
T ss_pred HHHHHHHHHHHCCCCCCCcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCce-eeecCcCccc----------eeec
Confidence 0 011112233 57777764311111000001 1366666554 3455
Q ss_pred eeecccccC---CccchhHHHHhhh--cCCCCcccEEEEeeeeeeCCCcccccccce---------------eccccccc
Q psy13464 427 HTGGIDLKF---PHHENEEAQSCAF--HNQSQWVNYWLHTGHLRGTDGTRRLRAARF---------------ITNLSGST 486 (515)
Q Consensus 427 H~GG~DL~F---PHHENEiAQsea~--~g~~~~a~yWlH~G~v~v~G~KMSks~Gnf---------------it~~~li~ 486 (515)
|.=|+.|+. -|..|-.-|...+ +|....+ .-++.+||.++|.|||||++.. -|+..+-+
T Consensus 223 ~l~gITHvlRg~E~~~~t~~~~~i~~alg~~~~P-~~~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrr 301 (554)
T PRK05347 223 AIEGITHSLCTLEFEDHRPLYDWVLDNLPIPPHP-RQYEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRR 301 (554)
T ss_pred cccCCceEEeccccccChHHHHHHHHHcCCCCCC-ceEEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHH
Confidence 555666666 5666655554332 1421112 3457799999999999999753 27888899
Q ss_pred cccCccccC
Q psy13464 487 IGYTRDTCA 495 (515)
Q Consensus 487 ~~y~~D~~~ 495 (515)
+||..++.+
T Consensus 302 rG~~PeAi~ 310 (554)
T PRK05347 302 RGYTPESIR 310 (554)
T ss_pred CCCCHHHHH
Confidence 999887543
No 85
>PLN02946 cysteine-tRNA ligase
Probab=98.37 E-value=1.7e-07 Score=103.32 Aligned_cols=43 Identities=33% Similarity=0.515 Sum_probs=40.9
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
.+||||||+||+.|+++|+++ |.|+++.+|+|+||+|||||.+
T Consensus 93 ~~HIGhaR~~V~~Dvl~R~Lr-~~Gy~V~~V~niTDiDDKIi~~ 135 (557)
T PLN02946 93 LSHIGHARVYVTFDVLYRYLK-HLGYEVRYVRNFTDVDDKIIAR 135 (557)
T ss_pred CCccccchhhHHHHHHHHHHH-hcCCcEEEEECCCCccCHHHHH
Confidence 589999999999999999997 8999999999999999999975
No 86
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.31 E-value=3.6e-06 Score=84.30 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCCCcceecccCCCCCccCcccCc
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWGRNENITQHAVKRSP 381 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~~YG~Ls~~~~~~t~~~~Kr~~ 381 (515)
+.+.+.++++.||+.. |...+-|++++...+++++|+++|.||. . .. ..
T Consensus 52 ~~~~I~~dL~wlGl~w-D~~~~QS~r~~~Y~~~~~~L~~~g~aY~-~------------------~~-----------~~ 100 (238)
T cd00807 52 YVDSIKEDVKWLGIKP-YKVTYASDYFDQLYEYAEQLIKKGKAYV-H------------------HR-----------TG 100 (238)
T ss_pred HHHHHHHHHHHcCCCC-CCceecccCHHHHHHHHHHHHHcCCeec-C------------------CC-----------CC
Confidence 6789999999999996 7666889999999999999999999996 0 00 00
Q ss_pred cCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEe
Q psy13464 382 FDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHT 461 (515)
Q Consensus 382 ~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~ 461 (515)
.+|.+ +|..|+-|.. -....|-+ --.-|.||.=.- .--+...+++ |- +.++ ++|+
T Consensus 101 ~~~~i------------------~ptY~lA~vV-DD~~~gIT--hVvRG~D~l~~t-~~Q~~l~~aL-g~-~~P~-~~~~ 155 (238)
T cd00807 101 DKWCI------------------YPTYDFAHPI-VDSIEGIT--HSLCTLEFEDRR-PSYYWLCDAL-RL-YRPH-QWEF 155 (238)
T ss_pred CCEEE------------------EeccccceEe-eccccCCC--eEEechhhhcCC-HHHHHHHHHc-CC-CCCc-eeEE
Confidence 13332 2555654432 11222332 223366654311 1122333443 53 3344 4466
Q ss_pred eeeeeCCCcccccccc---------------eeccccccccccCccccC
Q psy13464 462 GHLRGTDGTRRLRAAR---------------FITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 462 G~v~v~G~KMSks~Gn---------------fit~~~li~~~y~~D~~~ 495 (515)
+||..+|.|||||.|. ..++..+-.+||..++++
T Consensus 156 ~hln~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~ 204 (238)
T cd00807 156 SRLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIR 204 (238)
T ss_pred EEECCCCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHH
Confidence 8999999999999962 124566667777666443
No 87
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.28 E-value=3.4e-07 Score=99.82 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=41.1
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcc----------hhHHHhh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDI----------DDKIINK 183 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDi----------ddKii~r 183 (515)
.-+||||||+||+.|+++|+++ ++|+++.+||||||| ||||+.+
T Consensus 35 ~~~HiGhar~~v~~Dvl~R~l~-~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~ 88 (490)
T PRK14536 35 NYAHIGNLRTYVFQDTLRRTLH-FLGYRVTHVMNITDVGHLTDDADSGEDKMVKS 88 (490)
T ss_pred CCcccchhHHHHHHHHHHHHHH-hcCCceEEEEeeccccccccCCcCCChHHHHH
Confidence 4689999999999999999998 899999999999999 9999864
No 88
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=98.24 E-value=5.3e-07 Score=96.40 Aligned_cols=43 Identities=23% Similarity=0.444 Sum_probs=40.4
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
.+||||||+||..|+++|.++. .|+++.+|+|+||+|||||.+
T Consensus 49 ~~HIGhart~V~~Dvl~R~lr~-~G~~V~fV~nitD~dDKIi~~ 91 (411)
T TIGR03447 49 ATHLGHAATYLTFDLVNRVWRD-AGHRVHYVQNVTDVDDPLFER 91 (411)
T ss_pred CcccccchHHHHHHHHHHHHHh-cCCceEEeeCCCchhHHHHHH
Confidence 5899999999999999999985 799999999999999999865
No 89
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=98.22 E-value=4.6e-06 Score=91.63 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeee
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYI 346 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe 346 (515)
|.+.+.++|+-||+...+...+.|++.+.+.++.++|+++|.||.
T Consensus 51 ~~~~I~~dL~wLG~~~d~~~~~qS~~~~~~~~~a~~Li~~G~AY~ 95 (522)
T TIGR00440 51 YVESIKRDVEWLGFKWEGKIRYSSDYFDELYRYAEELIKKGLAYV 95 (522)
T ss_pred HHHHHHHHHHHcCCCCCCCceEccccHHHHHHHHHHHHHcCCEEe
Confidence 779999999999999645556899999999999999999999997
No 90
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=98.21 E-value=6.2e-07 Score=95.13 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=41.2
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
..+||||||+||..|+++|.++ +.|+++.+++|+||+||||+++
T Consensus 21 ~~~HIGh~r~~V~~Dvl~R~lr-~~G~~V~~V~nitD~ddKIi~~ 64 (384)
T PRK12418 21 DATHLGHAATYLAFDLVNRVWR-DAGHDVHYVQNVTDVDDPLLER 64 (384)
T ss_pred CCCccchhHHHHHHHHHHHHHH-HcCCceEEEEecCCcchHHHHH
Confidence 4589999999999999999999 5899999999999999999865
No 91
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.19 E-value=7.1e-06 Score=88.41 Aligned_cols=166 Identities=13% Similarity=0.125 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC--------------CCCc-ceec
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS--------------FPHY-FKLW 366 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~--------------~~~Y-G~Ls 366 (515)
+.+.++++|+.||+.. |.-.+.|+.++.-.+++++|+++|.||. -|+..+ -+.| |.-.
T Consensus 50 ~~~~I~~~L~WlGl~w-De~y~QSeR~~~Y~~~a~~Li~~G~AY~------C~cs~eel~~~r~~~~~~g~~~~Y~g~cr 122 (433)
T PRK12410 50 KDKEILEILNLFGISW-DKLVYQSENLKFHRQMAEKLLSEKKAFA------CFCSEEELEAKKEKAKNEKKPYRYDGTCE 122 (433)
T ss_pred HHHHHHHHHHHcCCCC-CCCeehhccHHHHHHHHHHHHHcCCeee------ecCCHHHHHHHHHHHhhcCCCCCCCchhh
Confidence 6789999999999996 8777899999999999999999999996 222211 0012 1110
Q ss_pred ccCC------------CC--Cc-------------cCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhh
Q psy13464 367 GRNE------------NI--TQ-------------HAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHF 419 (515)
Q Consensus 367 ~~~~------------~~--t~-------------~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~ 419 (515)
+... .+ +. ...-.+-.||+|+|. .|.|..|.-+++ =...
T Consensus 123 ~l~~~e~~~~g~~~~iR~k~p~~~~~f~D~v~G~i~~~~~~~~D~Vi~R~-------------Dg~PtY~fA~vV-DD~~ 188 (433)
T PRK12410 123 NLEDDEVLNCNKPFVVRLKKPNHTMSFTDAIKGEVSFEPDEIDSFVILRA-------------DKTPTYNFACAV-DDML 188 (433)
T ss_pred CCCHhHHHhcCCCeEEEEEcCCCceeeeeccceeEEeccccCCCeEEEcC-------------CCCccccccchh-chhh
Confidence 0000 00 00 000011124444443 456777765442 1222
Q ss_pred cCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCCCcccccccceeccccccccccCcccc
Q psy13464 420 FGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTDGTRRLRAARFITNLSGSTIGYTRDTC 494 (515)
Q Consensus 420 lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~li~~~y~~D~~ 494 (515)
.|-+-.| -|.|++-.- .--+...+|+ |-.+ +-.|.|-..+ ..+|+|||||.|. .++.++.+.||..++.
T Consensus 189 mgIThVi--RG~d~l~~t-p~Qi~Ly~aL-g~~~-pp~f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi 258 (433)
T PRK12410 189 YDISLII--RGEDHVSNT-PKQILIREAL-GYNK-EITYAHLPIILNEEGKKMSKRDNA-SSVKWLLEQGFLPSAI 258 (433)
T ss_pred cCCCEEE--echhhhhCc-HHHHHHHHHc-CCCC-CCeEEEeeeeeCCCCCeeecccCh-hhHHHHHHCCCCHHHH
Confidence 3333223 366654311 1123344444 6432 2258887844 7889999999994 5788889999988743
No 92
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.15 E-value=1e-06 Score=95.84 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=40.7
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcc----------hhHHHhh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDI----------DDKIINK 183 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDi----------ddKii~r 183 (515)
.-+||||||+||..|+++|.++ +.|+++.+|||+||| ||||+.+
T Consensus 33 d~~HiGh~r~~v~~Dvl~R~l~-~~G~~V~~v~NiTDIghltg~~D~gddKIi~~ 86 (481)
T PRK14534 33 NYAHIGNFRTYIFEDLLIKSLR-LLKYNVNYAMNITDIGHLTGDFDDGEDKVVKA 86 (481)
T ss_pred CCCCccchhHHHHHHHHHHHHH-HcCCceEEEEeccccccccCCccCCCcHHHHH
Confidence 3589999999999999999998 689999999999999 9999864
No 93
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=98.15 E-value=1.1e-06 Score=98.58 Aligned_cols=44 Identities=36% Similarity=0.458 Sum_probs=40.9
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
..+||||||+||+.|+++|.++. .|+++.+|+|+||+|||||.+
T Consensus 260 d~~HIGHaRt~V~~DVL~R~Lr~-~Gy~V~fV~NiTD~DDKII~~ 303 (699)
T PRK14535 260 DYCHLGHARVMVVFDMIARWLRE-CGYPLTYVRNITDIDDKIIAR 303 (699)
T ss_pred CCCcccchhHHHHHHHHHHHHHH-cCCceEEEeCCcccchHHHHH
Confidence 35899999999999999999984 899999999999999999864
No 94
>KOG0435|consensus
Probab=98.13 E-value=3.2e-06 Score=94.00 Aligned_cols=70 Identities=23% Similarity=0.189 Sum_probs=55.8
Q ss_pred Cccccc-cCCCCceeEEEcC--CccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhh
Q psy13464 41 TKVPFI-IQNKNHLKWYACG--PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSL 112 (515)
Q Consensus 41 ~k~~f~-~~~~~~v~~y~cg--ptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l 112 (515)
.--||. +.+.++-+ |+-- |-+-+..||||.|.|+..|+++||.| +.||+|.+=||-+-.+-+.-++|.+-
T Consensus 45 ~~~~~~~~~d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~r-m~GynVihPMGWDaFGLPAENAAier 117 (876)
T KOG0435|consen 45 DGFPFSKDSDKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYR-MKGYNVIHPMGWDAFGLPAENAAIER 117 (876)
T ss_pred cCCccccccccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHH-hcCceeecCCcccccCCchhhHHHhc
Confidence 334555 44444444 6544 66668999999999999999999999 99999999999999998887777764
No 95
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.13 E-value=4.5e-05 Score=85.02 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCCCCCcc-cccccccHHHHHHHHHHHHHCCCeee
Q psy13464 302 YELEYFESMEKFGVLPPTR-ATRVSEFIPHIQSFIQTLLDTKQAYI 346 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~-~pRaTehI~~iie~I~kLidnG~AYe 346 (515)
|.+.+++|++.||+.. |. ..+.|++.+...++.++|+++|.||.
T Consensus 103 ~~d~IleDL~WLGl~w-De~~~~QSdr~d~y~e~a~~Li~~G~AY~ 147 (601)
T PTZ00402 103 FEQAILDDLATLGVSW-DVGPTYSSDYMDLMYEKAEELIKKGLAYC 147 (601)
T ss_pred HHHHHHHHHHHCCCCC-CCceeeccccHHHHHHHHHHHHHcCCEEE
Confidence 7899999999999985 64 56899999999999999999999996
No 96
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.10 E-value=1.1e-05 Score=83.44 Aligned_cols=167 Identities=17% Similarity=0.098 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC----------------CCCccee
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS----------------FPHYFKL 365 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~----------------~~~YG~L 365 (515)
|.+.+.++|+.||+....-..+.|++.+...+++++|+++|.||. -|+..+ .+.|-.-
T Consensus 52 ~~~~i~~~L~wlGl~~D~~~~~QS~r~~~Y~~~~~~L~~~g~aY~------C~Csr~~l~~~r~~~~~~~~~~~~~y~~~ 125 (314)
T PF00749_consen 52 FYDAILEDLRWLGLEWDYGPYYQSDRLEIYQEAAEKLIDKGKAYP------CFCSREELKAAREAQEGAGCPHRPRYPGT 125 (314)
T ss_dssp HHHHHHHHHHHHT---STCEEEGGGGHHHHHHHHHHHHHTTSEEE------EESEHHHHHHHHHHHHHTTSTTTTSBHHH
T ss_pred HHHHHHhheeEEEEecCCeEEeHHHHHHHHHHHHHHHhhcCCCcc------ccCCHHHHHHHHHHhhccCCCccccchhh
Confidence 678899999999999632566788999999999999999999997 344432 1112110
Q ss_pred cc--c---------CC-----C--CCcc--------------CcccCccCccccccccCCCCcccCCCCCCCCCcccccc
Q psy13464 366 WG--R---------NE-----N--ITQH--------------AVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413 (515)
Q Consensus 366 s~--~---------~~-----~--~t~~--------------~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECS 413 (515)
.+ . +. . .+.. ....+.-||+++|. .|.|..|.-|+
T Consensus 126 c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~v~g~i~~~~~~~~D~vi~r~-------------dg~ptY~fA~v 192 (314)
T PF00749_consen 126 CRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDLVRGRIIFDPSDLGDFVIRRS-------------DGYPTYHFAVV 192 (314)
T ss_dssp HHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEETTTEEEEEEGGGSBTEEEEST-------------TSEB-HHHHHH
T ss_pred hhhhhHHHHHhhhccCCceeeeeecccccccccccCcceeeeeccccCCchhcccc-------------ccCccccccee
Confidence 00 0 00 0 0000 00111235555543 35677776443
Q ss_pred hhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccce-eccccccccccCcc
Q psy13464 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARF-ITNLSGSTIGYTRD 492 (515)
Q Consensus 414 AM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnf-it~~~li~~~y~~D 492 (515)
.=....|-+- -.=|.||+-. -..-+...+++ |-. .+.|.-|...+..+|+|+|||.|.. |.+..+.+.||...
T Consensus 193 -VDD~~~gITH--ViRG~D~l~~-t~~Q~~L~~~L-g~~-~P~~~H~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~ 266 (314)
T PF00749_consen 193 -VDDHLMGITH--VIRGEDLLSS-TPRQILLYEAL-GWP-PPPYAHLPLILNEDGKKLSKRKGAKSIELGDYREWGDPPE 266 (314)
T ss_dssp -HHHHHTT-SE--EEEEGGGTTC-HHHHHHHHHHC-TSS-S-EEEEEEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THH
T ss_pred -ecccccccCe--EEEccccccc-cHHHHHHHHHh-CCC-CcceEeeeeeecCCCcEechhhccccccccccccCCCCHH
Confidence 2222344333 3447887642 22233444444 643 3455444667788899999999944 46777777777665
Q ss_pred c
Q psy13464 493 T 493 (515)
Q Consensus 493 ~ 493 (515)
+
T Consensus 267 ~ 267 (314)
T PF00749_consen 267 A 267 (314)
T ss_dssp H
T ss_pred H
Confidence 3
No 97
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.10 E-value=2.8e-05 Score=88.91 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeee
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYI 346 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe 346 (515)
|.+.+.+||+-||+..+....+.|++.+...++.++|+++|.||.
T Consensus 82 ~~~~I~~dl~wLG~~wd~~~~~qS~~~~~y~~~a~~Li~~G~aY~ 126 (771)
T PRK14703 82 YVEAIKDDVRWLGFDWGEHLYYASDYFERMYAYAEQLIKMGLAYV 126 (771)
T ss_pred HHHHHHHHHHHcCCCCCCCceEeecCHHHHHHHHHHHHHcCCccc
Confidence 789999999999999644457899999999999999999999997
No 98
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=7.8e-06 Score=94.67 Aligned_cols=52 Identities=23% Similarity=0.148 Sum_probs=49.3
Q ss_pred CccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhh
Q psy13464 60 PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSL 112 (515)
Q Consensus 60 ptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l 112 (515)
|..++.+|||||-+=+.=|++.||-. +.||+|.++-|=+.++-+|-.++++.
T Consensus 58 PyANG~iHiGHalnKilKDiI~Ry~~-m~G~~v~~~pGWDcHGLPIE~~vek~ 109 (933)
T COG0060 58 PYANGNIHIGHALNKILKDIIVRYKT-MQGYDVPYVPGWDCHGLPIELKVEKK 109 (933)
T ss_pred CCCCCCcchhhhHHHhhhhhhhhhhc-ccCCcCCCCCCCcCCCchHHHHHHHH
Confidence 78899999999999999999999999 99999999999999999999888765
No 99
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=98.09 E-value=5.1e-07 Score=104.02 Aligned_cols=58 Identities=12% Similarity=-0.028 Sum_probs=48.7
Q ss_pred ccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHH
Q psy13464 138 GSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKR 197 (515)
Q Consensus 138 ~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~ 197 (515)
|. +|+|||++|+..|++-|..+ ..|+++.++|.-++-..+|..+|.+.+.++.+.+.+
T Consensus 42 G~-lHiGH~~~~~~~Dvi~Ry~r-m~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~ 99 (842)
T TIGR00396 42 GA-LHMGHVRNYTITDVLSRYYR-MKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYE 99 (842)
T ss_pred Cc-cccchhHHHHHHHHHHHHHH-hcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHH
Confidence 44 89999999999999999998 699999999988888888888886667766655443
No 100
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=98.07 E-value=1.8e-06 Score=93.49 Aligned_cols=43 Identities=37% Similarity=0.618 Sum_probs=40.7
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
.+||||||+|++.|+++|.++ +.|+++.+++|+||+||||+.+
T Consensus 34 ~~HiGhar~~v~~Dvl~R~lr-~~G~~V~~v~n~tD~ddkIi~~ 76 (465)
T TIGR00435 34 YCHIGHARTAIVFDVLRRYLR-YLGYKVQYVQNITDIDDKIIKR 76 (465)
T ss_pred CcccccchHHHHHHHHHHHHH-HcCCcEEEEEeeCCccHHHHHH
Confidence 689999999999999999998 8999999999999999999864
No 101
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=4.1e-05 Score=83.39 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCCCCcc-cccccccHHHHHHHHHHHHHCCCeee
Q psy13464 302 YELEYFESMEKFGVLPPTR-ATRVSEFIPHIQSFIQTLLDTKQAYI 346 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~-~pRaTehI~~iie~I~kLidnG~AYe 346 (515)
|.+.++++|+-||+.. |. .-+.|++.+...+++++|+++|.||.
T Consensus 60 ~~~~I~~~L~WLGl~w-de~~~~QS~r~~~Y~~~~~~Li~~G~AY~ 104 (472)
T COG0008 60 AEDAILEDLEWLGLDW-DEGPYYQSERFDIYYEYAEKLIEKGKAYV 104 (472)
T ss_pred HHHHHHHHHHhcCCCC-CCceeehhhhHHHHHHHHHHHHHCCCeEE
Confidence 6789999999999996 77 68999999999999999999999997
No 102
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=98.00 E-value=3.5e-06 Score=91.14 Aligned_cols=44 Identities=39% Similarity=0.626 Sum_probs=41.2
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
..+||||||+|+..|+++|.++ +.|+++.+++|+||+||||+.+
T Consensus 35 ~~~HiGHar~~v~~Dvl~R~lr-~~G~~V~~v~~~tD~ddki~~~ 78 (463)
T PRK00260 35 DYAHIGHARSFVVFDVLRRYLR-YLGYKVTYVRNITDIDDKIIKR 78 (463)
T ss_pred CCcccccchhHHHHHHHHHHHH-hcCCceEEeecCCCCcHHHHHH
Confidence 4689999999999999999998 8999999999999999999864
No 103
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.98 E-value=2.5e-05 Score=86.55 Aligned_cols=172 Identities=17% Similarity=0.136 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC----CCCcceecc-cCC------
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS----FPHYFKLWG-RNE------ 370 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~----~~~YG~Ls~-~~~------ 370 (515)
|.+.+.++++.||+.. |..+..|++++.+.++.++|+++|.||. -|+..+ ...-|+-+. ++.
T Consensus 102 ~~~~I~~dL~wLGi~~-D~~~~qS~y~~~~ye~A~~Li~~G~AY~------C~cs~eei~~~R~~~~~~~~R~~~~eenL 174 (574)
T PTZ00437 102 YIDAIMEMVKWMGWKP-DWVTFSSDYFDQLHEFAVQLIKDGKAYV------DHSTPDELKQQREQREDSPWRNRSVEENL 174 (574)
T ss_pred HHHHHHHHHHHcCCCC-CCCCcCchhHHHHHHHHHHHHHcCCEEE------cCCCHHHHHHHhhcccCCccccCCHHHHH
Confidence 7799999999999995 8888999999999999999999999997 122111 000111000 000
Q ss_pred ------------------CCCccCcccC--ccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeec
Q psy13464 371 ------------------NITQHAVKRS--PFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGG 430 (515)
Q Consensus 371 ------------------~~t~~~~Kr~--~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG 430 (515)
.+..+....| -+|+++..-.....|-=.++| .+.|-.|..| .+|=|.=|
T Consensus 175 ~lfe~M~~g~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~-~iyPtYdFa~----------~vdD~l~g 243 (574)
T PTZ00437 175 LLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKW-CIYPSYDFTH----------CLIDSLED 243 (574)
T ss_pred HHHHHHhhcccccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCce-EEEccCcccc----------eeechhcC
Confidence 0001111112 245555543222122111333 5667766554 45556666
Q ss_pred ccccCCccchhHH------HHhhhcCCCCcccEEEEeeeeeeCCCcccccccce---------------ecccccccccc
Q psy13464 431 IDLKFPHHENEEA------QSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARF---------------ITNLSGSTIGY 489 (515)
Q Consensus 431 ~DL~FPHHENEiA------Qsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnf---------------it~~~li~~~y 489 (515)
+.|+.--.|.+.- ...++ +-. -+ +-.|.+.|+++|.|||||++.. .|+..+-.+||
T Consensus 244 ITHvlct~Ef~~r~~~y~wl~~~l-~l~-~p-~~~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~ 320 (574)
T PTZ00437 244 IDYSLCTLEFETRRESYFWLLEEL-NLW-RP-HVWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGY 320 (574)
T ss_pred CCEEeeechhhcccHHHHHHHHHh-CCc-cc-ceEeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCC
Confidence 6666622222221 12222 211 12 2446699999999999999975 47777888888
Q ss_pred Ccccc
Q psy13464 490 TRDTC 494 (515)
Q Consensus 490 ~~D~~ 494 (515)
..++.
T Consensus 321 ~peAi 325 (574)
T PTZ00437 321 TPAAI 325 (574)
T ss_pred CHHHH
Confidence 77643
No 104
>PLN02563 aminoacyl-tRNA ligase
Probab=97.97 E-value=1.3e-06 Score=102.06 Aligned_cols=57 Identities=14% Similarity=-0.026 Sum_probs=41.2
Q ss_pred cccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHH
Q psy13464 137 VGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTV 194 (515)
Q Consensus 137 ~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~ 194 (515)
-|..+|+|||++|+..|++-|..+ ..|+++-+.|--..---++.+.|.+.+..++..
T Consensus 122 nG~~lHiGH~~~y~~~DviaRy~R-m~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~ 178 (963)
T PLN02563 122 SGAGLHVGHPEGYTATDILARYKR-MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKIT 178 (963)
T ss_pred CCcccchhhHHHHHHHHHHHHHHH-hcCCeecccccccccCcHHHHHHHHcCCChHHh
Confidence 354589999999999999999986 689999888755444555555554445555433
No 105
>PLN02859 glutamine-tRNA ligase
Probab=97.91 E-value=2.6e-05 Score=88.96 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeee
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYI 346 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe 346 (515)
|.+.+.++++.||+.+ +...+.|++.+.+.++..+|+++|.||.
T Consensus 315 ~~~~I~edL~WLG~~~-d~~~~qSd~f~~~Y~~A~~Li~~G~AY~ 358 (788)
T PLN02859 315 YIDHIEEIVEWMGWEP-FKITYTSDYFQELYELAVELIRRGHAYV 358 (788)
T ss_pred HHHHHHHHHHHcCCCC-CCcccccHhHHHHHHHHHHHHHcCCeEe
Confidence 7899999999999984 7778999999999999999999999997
No 106
>PLN02627 glutamyl-tRNA synthetase
Probab=97.84 E-value=0.00013 Score=80.47 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCCCCcccc---------cccccHHHHHHHHHHHHHCCCeee
Q psy13464 302 YELEYFESMEKFGVLPPTRAT---------RVSEFIPHIQSFIQTLLDTKQAYI 346 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~p---------RaTehI~~iie~I~kLidnG~AYe 346 (515)
+.+.++++|+.|||.. |.-| +-|++++...+++++|+++|+||.
T Consensus 96 ~~~~I~~~L~WLGl~w-Degp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 96 SEEAVLRDLKWLGLDW-DEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred HHHHHHHHHHHcCCCC-CcCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCeee
Confidence 6788999999999986 6543 678999999999999999999996
No 107
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.75 E-value=7.8e-05 Score=77.03 Aligned_cols=44 Identities=11% Similarity=0.008 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCCCCcc-cccccccHHHHHHHHHHHHHCCCeee
Q psy13464 302 YELEYFESMEKFGVLPPTR-ATRVSEFIPHIQSFIQTLLDTKQAYI 346 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~-~pRaTehI~~iie~I~kLidnG~AYe 346 (515)
|.+.+.++|+.||+.. |. --+-|++++...++.++|+++|.||.
T Consensus 56 ~~~~I~~dL~wlGl~w-De~~~~QS~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 56 AADAILADLEWLGLHW-DGPVLYQSQRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred HHHHHHHHHHHCCCCC-CCCceEeeccHHHHHHHHHHHHHCCCcee
Confidence 6789999999999996 63 45788999999999999999999996
No 108
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.74 E-value=1.5e-05 Score=78.24 Aligned_cols=43 Identities=40% Similarity=0.577 Sum_probs=40.1
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
.+||||||+|+..|+++|.++ ..|+++.+++++||.++||+.+
T Consensus 33 ~~HiGH~r~~v~~Dvl~R~lr-~~G~~V~~~~g~dd~g~ki~~~ 75 (213)
T cd00672 33 YAHIGHARTYVVFDVLRRYLE-DLGYKVRYVQNITDIDDKIIKR 75 (213)
T ss_pred CcccccchhHHHHHHHHHHHH-hcCCeeEEEeecCCCCCHHHHH
Confidence 489999999999999999997 6899999999999999999864
No 109
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.74 E-value=5.4e-06 Score=95.24 Aligned_cols=59 Identities=12% Similarity=-0.104 Sum_probs=49.4
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHH
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~ 198 (515)
..+|+|||++|+..|++.|..+ ..|+++.+++.-++-..+|..+|.+.+.++.+.+.+.
T Consensus 45 G~lHiGH~~~~~~~Dii~Ry~r-m~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~ 103 (805)
T PRK00390 45 GGLHMGHVRNYTIGDVIARYKR-MQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYEN 103 (805)
T ss_pred CCcchhhhHHHHHHHHHHHHHH-hcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHH
Confidence 3699999999999999999987 6999999999988888888888866677776655443
No 110
>KOG1195|consensus
Probab=97.64 E-value=0.00019 Score=78.29 Aligned_cols=261 Identities=13% Similarity=0.122 Sum_probs=154.0
Q ss_pred CceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHH
Q psy13464 51 NHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFK 130 (515)
Q Consensus 51 ~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~ 130 (515)
+++=+=.--|.+.-.-|+||.|+-+..-.+.-..+ ..|++|.-+-=+-|.+--+=--|.- +.+|..+
T Consensus 110 k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e-~~G~~Vtr~NYLGDWGkQFgll~~g-~~~~g~e----------- 176 (567)
T KOG1195|consen 110 KKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHE-ALGWEVTRVNYLGDWGKQFGLLALG-FQLYGDE----------- 176 (567)
T ss_pred ceEEEEecCCCcccccccchhhhhhhhhHhhhhHH-hhCCceeehhhhhHHHHHhhHHhcc-HHhhCch-----------
Confidence 44555556799999999999999999999998888 7899999887777776432211111 0111110
Q ss_pred hhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHH
Q psy13464 131 ILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQK 210 (515)
Q Consensus 131 ~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~ 210 (515)
..+..+-+++.+.-|..-| +..+
T Consensus 177 -----------------~~L~~~pI~hL~dvYVk~n-------------------k~~~--------------------- 199 (567)
T KOG1195|consen 177 -----------------EELQLNPIKHLFDVYVKIN-------------------KDAE--------------------- 199 (567)
T ss_pred -----------------hhhccchHHHHHHHHHHhh-------------------hhhh---------------------
Confidence 0011222222222222111 0000
Q ss_pred HHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccc-cCCCcccchhHhhhhhhhHHHHHhhccCCccc
Q psy13464 211 VVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQ-FKDGKVFSDRVFISLPLYLILIQVSLLGPLTL 289 (515)
Q Consensus 211 ~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 289 (515)
+ + ......+.|++++++ +-|.+|-..|| |.+=
T Consensus 200 ---------~----~-~~~~~~are~f~rlE-----~~d~e~~k~Wqrfr~l---------------------------- 232 (567)
T KOG1195|consen 200 ---------K----D-PDTAEEAREFFKRLE-----DGDEEHLKLWQRFRDL---------------------------- 232 (567)
T ss_pred ---------h----C-cchHHHHHHHHHHHh-----cccHHHHHHHHHhhhh----------------------------
Confidence 0 0 001133556666655 45777777786 3322
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccH-HHHHHHHHHHHHCCCeeeecCCcEEEeccCCC---Cccee
Q psy13464 290 RTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFI-PHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP---HYFKL 365 (515)
Q Consensus 290 ~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI-~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~---~YG~L 365 (515)
-++.+.+.-++|||.+ |.|+-.|... +.|++..+.+.++|..-+ .+|...||++++. .++.+
T Consensus 233 ------------sIe~l~~~Y~Rl~v~F-D~y~gESqv~~e~~~~~~d~~rs~~l~~e-~dG~~vidL~~~~~~~~~~~V 298 (567)
T KOG1195|consen 233 ------------SIEKLIKTYNRLNVKF-DEYSGESQVSNEKMQEALDLLRSANLTEE-IDGTIVIDLSKIDKKAGKAVV 298 (567)
T ss_pred ------------hHHHHHHHHHHhceee-eeccchHHHHHHHHHHHHHHHHhcCCccc-CCCcEEEEecccCcccceEEE
Confidence 3467788889999998 9999999654 477777777777775554 7899999999764 57778
Q ss_pred cccCCCCCccCcccCc-------cCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCcc
Q psy13464 366 WGRNENITQHAVKRSP-------FDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHH 438 (515)
Q Consensus 366 s~~~~~~t~~~~Kr~~-------~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHH 438 (515)
-++|+ +..|-.|+- -+|.-||.- =+.-.|.|.-|
T Consensus 299 ~ksdg--ttLYltRdiaaal~Rl~~y~fdr~i----------------------------------YVvd~~Q~~hf--- 339 (567)
T KOG1195|consen 299 QKSDG--TTLYLTRDIAAALDRLEKYSFDRLI----------------------------------YVVDSQQKDHF--- 339 (567)
T ss_pred EcCCC--ceehHHHHHHHHHHHHHhcCcceEE----------------------------------EEechHHHHHH---
Confidence 88887 444444440 233334421 01111222211
Q ss_pred chhHHHHhhhcCCCCcccE--EEEeeeeeeCCCcccccccceecccccccc
Q psy13464 439 ENEEAQSCAFHNQSQWVNY--WLHTGHLRGTDGTRRLRAARFITNLSGSTI 487 (515)
Q Consensus 439 ENEiAQsea~~g~~~~a~y--WlH~G~v~v~G~KMSks~Gnfit~~~li~~ 487 (515)
+-.-+.....|. .|+.- ++-.|.| .-||+|+|+.+=+++.+++
T Consensus 340 -~~lf~ilk~mg~-~~a~~~qHV~~G~v----~GmsTRkG~~~fl~dil~e 384 (567)
T KOG1195|consen 340 -CQLFEILKKMGF-DWAKKLQHVNFGRV----QGMSTRKGKVVFLDDILEE 384 (567)
T ss_pred -HHHHHHHHHhCc-hhhhhcceeccccc----ccccccCCceeeHHHHHHH
Confidence 222233334463 46633 4444444 5799999999988888877
No 111
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=2e-05 Score=91.45 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=49.0
Q ss_pred eEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCCCcccccccceeccccccccccCccccC
Q psy13464 425 DLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 425 DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
|.-.=|+|+-.===---...+.|.+|..|+-+.-+| |++ .=+|+|||||+||+|+|.++++. ||+|.+|
T Consensus 557 D~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltH-GfvlDe~GrKMSKSlGN~v~P~~V~~~-yGADiLR 626 (933)
T COG0060 557 DFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTH-GFVLDEKGRKMSKSLGNVVDPQDVIDK-YGADILR 626 (933)
T ss_pred cEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhc-ccEECCCCCCccccCCCcCCHHHHHHh-hCchhee
Confidence 444555554321111234566677786565577889 665 45688999999999999999999 9999876
No 112
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.40 E-value=0.00038 Score=71.11 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCCCCcccc-cccccHHHHHHHHHHHHHCCCeee
Q psy13464 302 YELEYFESMEKFGVLPPTRAT-RVSEFIPHIQSFIQTLLDTKQAYI 346 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~p-RaTehI~~iie~I~kLidnG~AYe 346 (515)
+.+.++++|+.|||.. |.-| +.|++++.-.+++++|+++|.||.
T Consensus 51 ~~~~I~~dL~wLGl~w-De~~~~QS~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 51 AADDILRTLEAYGLHW-DGEVVYQSQRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred HHHHHHHHHHHcCCCC-CCCeeeeeCCHHHHHHHHHHHHHcCCEEe
Confidence 6788999999999996 7555 899999999999999999999996
No 113
>KOG1247|consensus
Probab=97.32 E-value=0.00052 Score=73.57 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=48.0
Q ss_pred EcCCccCCCCCCcch-hhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhh
Q psy13464 57 ACGPTVYDSPHIGHA-VCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSL 112 (515)
Q Consensus 57 ~cgptvyd~~HiGha-R~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l 112 (515)
.-=|-|++.+|+||. ...+.+||.+||-+ ..|+...|+++.++.+.++.-+|.+-
T Consensus 20 salpyvnnvphlgNIIg~vlsAdV~Aryc~-~r~~~~~yicGTDEYgtatetkalee 75 (567)
T KOG1247|consen 20 SALPYVNNVPHLGNIIGSVLSADVFARYCP-LRGPNTLYICGTDEYGTATETKALEE 75 (567)
T ss_pred cccceecccccccceeeEEeehhhhccccc-CCCCceEEeccccccchhhHHHHHHc
Confidence 444788999999995 47888999999999 89999999999999999888777764
No 114
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=97.20 E-value=0.00025 Score=68.98 Aligned_cols=49 Identities=22% Similarity=0.120 Sum_probs=43.8
Q ss_pred ccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhccc
Q psy13464 138 GSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSL 187 (515)
Q Consensus 138 ~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~ 187 (515)
...+|+||+||++.-|.+.|+++ +.|+++..+..++|.++||+.+|.+.
T Consensus 12 ~~~~HiGH~R~~vigD~l~R~l~-~~G~~V~~~~~~~D~G~qi~~~a~~~ 60 (212)
T cd00671 12 TGPLHVGHLRNAIIGDSLARILE-FLGYDVTREYYINDWGRQIGLLILSL 60 (212)
T ss_pred CCCccccccHHHHHHHHHHHHHH-HCCCcEEEEeccCCcHHHHHHHHHHH
Confidence 45689999999999999999998 68999998888889999999988543
No 115
>KOG0433|consensus
Probab=97.14 E-value=0.0023 Score=72.66 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=54.3
Q ss_pred eEEeeCCCCCccccccCCCC-----------ceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCC
Q psy13464 32 IKIYNPITKTKVPFIIQNKN-----------HLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTD 100 (515)
Q Consensus 32 l~~~nslt~~k~~f~~~~~~-----------~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTD 100 (515)
+-=.|+.+|..+.|....+. ++..=.= ..++.+|||||+..|..||+.|++. +.|..+.||-+.+.
T Consensus 27 ~v~~Ns~gr~~q~~evi~~~~~~~~qls~~q~~~f~L~--danG~lhlghalnkILkdIinr~~l-aqg~~alyvpGwDc 103 (937)
T KOG0433|consen 27 LVHFNSTGRIGQVIEVIQPPEILSSQLSDQQRVEFELK--DANGNLHLGHALNKILKDIINRILL-AQGKSALYVPGWDC 103 (937)
T ss_pred ccccccccchHHHHHHhCChHHHHHHHhhccCceEEEe--ccCCCccchHHHHHHHHHHHHHHHH-hcCceeccCCCCCc
Confidence 44468877776655443321 2221111 1889999999999999999999999 89999999999999
Q ss_pred cchHHH
Q psy13464 101 IDDKII 106 (515)
Q Consensus 101 iDDKIi 106 (515)
++-.|-
T Consensus 104 hGLPiE 109 (937)
T KOG0433|consen 104 HGLPIE 109 (937)
T ss_pred CCCchH
Confidence 997665
No 116
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=96.81 E-value=0.00079 Score=72.87 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=39.6
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIIN 182 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ 182 (515)
..+||||||+|+..|++.|.++ +.|+++.++++.+|.++||+.
T Consensus 14 g~~HiGh~~~~~~~Dv~~R~~r-~~G~~v~~v~g~dd~g~~i~~ 56 (511)
T PRK11893 14 GKPHIGHAYTTLAADVLARFKR-LRGYDVFFLTGTDEHGQKIQR 56 (511)
T ss_pred CCcccchhHHHHHHHHHHHHHH-hcCCcEEecCCCCCCChHHHH
Confidence 4699999999999999999997 689999999999999998864
No 117
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=96.80 E-value=0.00077 Score=69.35 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=40.1
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
..+|||||++++..|++.|.++ ..|+++.++++.+|.++||+.+
T Consensus 13 g~~HlGH~~~~~~~Dv~~R~~r-~~G~~V~~~~g~Dd~g~~i~~~ 56 (319)
T cd00814 13 GVPHLGHLYGTVLADVFARYQR-LRGYDVLFVTGTDEHGTKIEQK 56 (319)
T ss_pred CCcchhhHHHHHHHHHHHHHHH-hCCCcccccCccCCCCcHHHHH
Confidence 4589999999999999999987 6899999999999999998753
No 118
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=96.57 E-value=0.0014 Score=71.61 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=40.0
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
..+|||||++|+..|++.|.++ ..|+++.++++.+|.++||+.+
T Consensus 12 g~lHiGH~~~~~~aDvl~R~~r-~~G~~V~~v~g~D~~g~~i~~~ 55 (530)
T TIGR00398 12 GKPHLGHAYTTILADVYARYKR-LRGYEVLFVCGTDEHGTKIELK 55 (530)
T ss_pred CCcccchhHHHHHHHHHHHHHH-hcCCeEEEecccCCCCcHHHHH
Confidence 4699999999999999999997 6899999999999999998753
No 119
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=96.55 E-value=0.0015 Score=66.91 Aligned_cols=49 Identities=18% Similarity=0.068 Sum_probs=44.3
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccc
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLK 188 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~ 188 (515)
..+|+|||++|+..|++.|.++ +.|+++.++++.++.+++|+.+|.+.+
T Consensus 13 g~~HiGH~~~~i~~D~i~R~~r-~~G~~v~~~~g~D~~g~~i~~~a~~~~ 61 (312)
T cd00668 13 GSLHLGHALTHIIADFIARYKR-MRGYEVPFLPGWDTHGLPIELKAERKG 61 (312)
T ss_pred CCcchhHHHHHHHHHHHHHHHH-hCCCCCCCCCccCCCCHHHHHHHHHhc
Confidence 4589999999999999999998 789999999999889999999996543
No 120
>KOG0432|consensus
Probab=96.48 E-value=0.00083 Score=77.14 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=60.3
Q ss_pred cccCC--CCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhh----hcCCCCcccEEEEeeee-eeCC
Q psy13464 396 WYESA--WGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCA----FHNQSQWVNYWLHTGHL-RGTD 468 (515)
Q Consensus 396 ~W~Sp--wG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea----~~g~~~~a~yWlH~G~v-~v~G 468 (515)
.|.|. |-.---||==|-..|..-|- ..+-=-|.|+.| .++|-... ++|+-||.+..+| |+| .-.|
T Consensus 520 TWFSS~L~PfS~lGWP~~t~d~~~fyP---~sllETG~DILf----FWVaRMvmLg~kLtG~lPF~~V~LH-~mVRDa~G 591 (995)
T KOG0432|consen 520 TWFSSGLWPFSTLGWPEETKDFKNFYP---LSLLETGHDILF----FWVARMVMLGLKLTGELPFKEVLLH-GLVRDAHG 591 (995)
T ss_pred hhhhcccccchhcCCccccccHHhcCC---chhhhcCchHHH----HHHHHHHHhhhhhcCCCCchheeec-hhhccccc
Confidence 56653 55555677666666665553 344456899988 45555443 3477788899999 777 5679
Q ss_pred Ccccccccceeccccccc
Q psy13464 469 GTRRLRAARFITNLSGST 486 (515)
Q Consensus 469 ~KMSks~Gnfit~~~li~ 486 (515)
+|||||+||+|+|.++|+
T Consensus 592 RKMSKSLGNVIDPlDVI~ 609 (995)
T KOG0432|consen 592 RKMSKSLGNVIDPLDVID 609 (995)
T ss_pred cccchhhccccCHHHHhc
Confidence 999999999999999998
No 121
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=96.36 E-value=0.0026 Score=65.48 Aligned_cols=43 Identities=16% Similarity=0.025 Sum_probs=39.3
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIIN 182 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ 182 (515)
..+||||||+++..|++.|.++ ..|+++.++++.+|.++||+.
T Consensus 13 g~~HiGH~~~~v~~Dv~~R~lr-~~G~~V~~v~g~Dd~g~~i~~ 55 (314)
T cd00812 13 GALHVGHVRTYTIGDIIARYKR-MQGYNVLFPMGFDAFGLPAEN 55 (314)
T ss_pred CCccccchHHHHHHHHHHHHHH-HcCCCcCCCCCcCCCCCHHHH
Confidence 3599999999999999999998 689999999999999998864
No 122
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=96.34 E-value=0.0022 Score=66.79 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=41.0
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCc----chhHHHhhh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTD----IDDKIINKA 184 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTD----iddKii~ra 184 (515)
..+|||||++++..|++.|.++ +.|+++.++++.|+ +++|+++++
T Consensus 14 G~lHiGHa~~~~~~Dvl~Ry~r-~~G~~V~~~~g~D~hG~~ie~ka~k~l 62 (338)
T cd00818 14 GLPHYGHALNKILKDIINRYKT-MQGYYVPRRPGWDCHGLPIELKVEKEL 62 (338)
T ss_pred CCchHHHHHHHHHHHHHHHHHH-hcCCccCCcCCcCCCCchhHHHHHHHh
Confidence 4589999999999999999997 79999999999998 888888764
No 123
>KOG1147|consensus
Probab=96.34 E-value=0.0055 Score=67.68 Aligned_cols=45 Identities=24% Similarity=0.518 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeee
Q psy13464 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYI 346 (515)
Q Consensus 301 ~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe 346 (515)
++++.+++|+.-|||.+ |.++.+|+|.+.|.+++.+|++.|-||.
T Consensus 250 eFe~~IleDl~~LgIkp-d~~TyTSDyF~~i~dycv~likeGKAYv 294 (712)
T KOG1147|consen 250 EFEDVILEDLSLLGIKP-DRVTYTSDYFDEIMDYCVKLIKEGKAYV 294 (712)
T ss_pred HHHHHHHHHHHHhCcCc-ceeeechhhHHHHHHHHHHHHhcCcccc
Confidence 48899999999999995 9999999999999999999999999997
No 124
>KOG0432|consensus
Probab=96.20 E-value=0.021 Score=66.18 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=43.9
Q ss_pred CCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccC
Q psy13464 50 KNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVT 99 (515)
Q Consensus 50 ~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiT 99 (515)
++...++..=|.|=+..|||||-+.-.-|.+.||-| +.|+.|.++-+.+
T Consensus 74 ~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~r-m~G~~vlw~PG~D 122 (995)
T KOG0432|consen 74 GGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNR-MHGYQVLWVPGTD 122 (995)
T ss_pred CCcceeecCCCCcccccchhHHHHHHHHHHHHHHHH-hcCCeeeecCCcc
Confidence 455678888888999999999999999999999999 9999999998864
No 125
>KOG0433|consensus
Probab=96.13 E-value=0.0043 Score=70.51 Aligned_cols=72 Identities=14% Similarity=0.092 Sum_probs=47.8
Q ss_pred ceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceecccccccc-----ccCccccC
Q psy13464 424 VDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTI-----GYTRDTCA 495 (515)
Q Consensus 424 ~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~-----~y~~D~~~ 495 (515)
.|+-.=|.|+--=--.--+--+-|+-++.|....+.|.=-|.=+|.|||||.||+|+|..+++- .||+|..|
T Consensus 567 aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR 643 (937)
T KOG0433|consen 567 ADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLR 643 (937)
T ss_pred eeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHhCCcccCCCcccccee
Confidence 5677778886433331122223333355555567999444456688999999999999988874 29999765
No 126
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=96.01 E-value=0.0046 Score=68.11 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=39.6
Q ss_pred cccccCccchh-hHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 139 SIPTRGHAVCN-VKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 139 ~~~~~ghar~~-~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
..+|||||+++ +..|++.|.++ ..|+++.++++.+|.++||+.+
T Consensus 16 g~~HiGH~~~~~~~~D~~~R~~r-~~G~~v~~~~g~d~~g~~i~~~ 60 (556)
T PRK12268 16 GPLHLGHLAGSGLPADVFARYQR-LKGNEVLFVSGSDEHGTPIELA 60 (556)
T ss_pred CCccccccccchhHHHHHHHHHH-hcCCceEecCcCCCcccHHHHH
Confidence 35999999998 99999999997 5799999999999999998753
No 127
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.97 E-value=0.0038 Score=56.68 Aligned_cols=55 Identities=20% Similarity=0.183 Sum_probs=49.4
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHH
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVA 195 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~ 195 (515)
.+|+||+|+++..|.+.|.++ ..|+++..+..++|.++++...|...+.++++.+
T Consensus 11 ~~HlGh~~~~~~~d~~~r~lr-~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~ 65 (143)
T cd00802 11 YLHIGHLRTIVTFDFLAQAYR-KLGYKVRCIALIDDAGGLIGDPANKKGENAKAFV 65 (143)
T ss_pred CccHhHHHHHHHHHHHHHHHH-HcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHH
Confidence 699999999999999999998 5799999999999999999998877677777655
No 128
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=95.63 E-value=0.0086 Score=67.51 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=35.3
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIIN 182 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ 182 (515)
..+|||||++|+..|++.|+++ ..|+++.++++.+|.++||..
T Consensus 17 g~~HiGH~~~~~~aDv~~R~~r-~~G~~v~~~~g~D~~g~~i~~ 59 (648)
T PRK12267 17 GKPHIGHAYTTIAADALARYKR-LQGYDVFFLTGTDEHGQKIQQ 59 (648)
T ss_pred CCcccccchHHHHHHHHHHHHH-hcCCceEeecCCCCcchHHHH
Confidence 3589999999999999998886 568888888888888887753
No 129
>KOG0434|consensus
Probab=95.59 E-value=0.0056 Score=69.23 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=40.3
Q ss_pred HHHhhhcCCCCcccEEEEeeeeee-CCCcccccccceeccccccccccCccccC
Q psy13464 443 AQSCAFHNQSQWVNYWLHTGHLRG-TDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 443 AQsea~~g~~~~a~yWlH~G~v~v-~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
..+.+++|+.++-|. +-+|.|.- +|+|||||+-|+=+|...+++ ||+|+.|
T Consensus 574 VlsT~LF~kppfkNv-IvnGlVLAeDG~KMSKrlkNYPdP~~iink-YGADalR 625 (1070)
T KOG0434|consen 574 VLSTALFGKPPFKNV-IVNGLVLAEDGKKMSKRLKNYPDPSLIINK-YGADALR 625 (1070)
T ss_pred HHHHHHcCCCcchhe-eEeeeEEecccHHHhhhhhcCCCHHHHHHh-hcchhee
Confidence 345667786555454 55577655 688999999999999999999 9999876
No 130
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.042 Score=64.11 Aligned_cols=49 Identities=14% Similarity=0.126 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCCccccccc---ccHHHHHHHHHHHHHCCCeee
Q psy13464 298 FNFRYELEYFESMEKFGVLPPTRATRVS---EFIPHIQSFIQTLLDTKQAYI 346 (515)
Q Consensus 298 ~~~~y~~~F~edm~aLNI~~PD~~pRaT---ehI~~iie~I~kLidnG~AYe 346 (515)
+...+...+.+.|++||++..--..|-| +....+++.+-+|.++|++|+
T Consensus 116 Wk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr 167 (877)
T COG0525 116 WKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYR 167 (877)
T ss_pred HHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceee
Confidence 4556999999999999999622223334 578899999999999999998
No 131
>PLN02224 methionine-tRNA ligase
Probab=95.30 E-value=0.012 Score=66.40 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=39.9
Q ss_pred ccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHh
Q psy13464 138 GSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIIN 182 (515)
Q Consensus 138 ~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ 182 (515)
-..+|||||++|+..|++.|.++ +.|+++.++++.+|.++||..
T Consensus 81 NG~~HiGHa~~~~~aDviaR~~r-~~G~~V~fv~G~DehG~kI~~ 124 (616)
T PLN02224 81 NAPPHMGSAYTTIAADSIARFQR-LLGKKVIFITGTDEHGEKIAT 124 (616)
T ss_pred CCCCchhccHHHHHHHHHHHHHH-hcCCceEEecCcCCcchHHHH
Confidence 34699999999999999999987 789999999999999998864
No 132
>KOG4426|consensus
Probab=94.51 E-value=0.26 Score=53.91 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=49.2
Q ss_pred eeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhh
Q psy13464 53 LKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKED 115 (515)
Q Consensus 53 v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~ 115 (515)
|-.=.--|..---.|+||.|+-|..|-|+|.|+ +.|++|.-+--+-|.+..-=---.+|+|+
T Consensus 190 vlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE-~~~~dVlR~NHvGDWGTQFGMLIahL~dk 251 (656)
T KOG4426|consen 190 VLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLE-FSGVDVLRRNHVGDWGTQFGMLIAHLFDK 251 (656)
T ss_pred EEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHH-hcCcceEeeccccchHHHHHHHHHHHHHh
Confidence 333344577777899999999999999999999 99999999999999987644434455543
No 133
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=94.24 E-value=0.032 Score=63.38 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=38.0
Q ss_pred ccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHh
Q psy13464 138 GSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIIN 182 (515)
Q Consensus 138 ~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ 182 (515)
-..+|||||++|+..|++.|.++ ..|+++.++++.++-..||+.
T Consensus 14 ng~~HiGH~~~~l~aDv~aR~~r-~~G~~V~~~~g~D~hG~~i~~ 57 (673)
T PRK00133 14 NGPIHLGHLVEYIQADIWVRYQR-MRGHEVLFVCADDAHGTPIML 57 (673)
T ss_pred CCcccccchHHHHHHHHHHHHHH-hcCCeeEEeCccCCCChHHHH
Confidence 34689999999999999999997 589999999996667777764
No 134
>KOG0435|consensus
Probab=92.95 E-value=0.021 Score=64.71 Aligned_cols=28 Identities=11% Similarity=-0.166 Sum_probs=25.9
Q ss_pred CCcccccccceeccccccccccCccccCC
Q psy13464 468 DGTRRLRAARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 468 G~KMSks~Gnfit~~~li~~~y~~D~~~~ 496 (515)
=+|||||++|.|+|.+.+++ ||+|+.|-
T Consensus 615 ~eKMSKSK~NGVdP~~~v~~-yG~D~tRl 642 (876)
T KOG0435|consen 615 YEKMSKSKHNGVDPADVVLE-YGVDTTRL 642 (876)
T ss_pred HHHhhhcccCCCCHHHHHHH-hCchHHHH
Confidence 48999999999999999999 99998764
No 135
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=92.81 E-value=0.071 Score=58.65 Aligned_cols=42 Identities=26% Similarity=0.153 Sum_probs=38.2
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHh
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIIN 182 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ 182 (515)
..|+||+|+++.-|.+.|+++ +.|+++..+..++|.++++..
T Consensus 125 ~lHiGH~R~~iigD~laR~lr-~~G~~V~~~~~i~D~G~qi~~ 166 (507)
T PRK01611 125 PLHVGHLRSAVIGDALARILE-FAGYDVTREYYVNDAGTQIGM 166 (507)
T ss_pred CCcCCchHHHHHHHHHHHHHH-HcCCcEEEEeeeCCccHHHHH
Confidence 469999999999999999996 799999999999999987753
No 136
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=90.91 E-value=0.14 Score=54.38 Aligned_cols=45 Identities=18% Similarity=0.047 Sum_probs=37.6
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKA 184 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra 184 (515)
..+|+|||++|+..|++.|..+ ..|+++.+++..++---+|...|
T Consensus 14 G~lHiGH~~~~~~~Dv~~Ry~r-~~G~~V~~~~G~D~hG~pie~~a 58 (382)
T cd00817 14 GSLHMGHALNNTIQDIIARYKR-MKGYNVLWPPGTDHAGIATQVVV 58 (382)
T ss_pred CcchHHHHHHHHHHHHHHHHHH-hcCCcccccCccCCCCChHHHHH
Confidence 4589999999999999999988 68999999998888555555444
No 137
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=89.91 E-value=0.16 Score=51.64 Aligned_cols=51 Identities=20% Similarity=0.099 Sum_probs=36.6
Q ss_pred eEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCCCccccccccee
Q psy13464 425 DLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTDGTRRLRAARFI 479 (515)
Q Consensus 425 DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfi 479 (515)
|+-.||+|+. ||++.=+=.++-. +..+ -+-+|.-.| .++|+|||||.||.+
T Consensus 153 ~l~~~G~DQ~-~~i~~~rd~a~r~-~~~~--~~~l~~~ll~~l~G~KMSKS~~~~~ 204 (269)
T cd00805 153 DLQLGGSDQR-GNITLGRDLIRKL-GYKK--VVGLTTPLLTGLDGGKMSKSEGNAI 204 (269)
T ss_pred CeeEecHHHH-HHHHHHHHHHHHh-CCCC--cEEEeeccccCCCCCcccCCCCCcc
Confidence 8999999999 7886544333333 3222 256676776 689999999999887
No 138
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=89.36 E-value=0.16 Score=54.81 Aligned_cols=56 Identities=13% Similarity=-0.013 Sum_probs=37.1
Q ss_pred CCceEeeecccccCCccch--hHHHHhhhcCCCCcccEEEEeeee-eeCCCcccccccceecccc
Q psy13464 422 GQVDLHTGGIDLKFPHHEN--EEAQSCAFHNQSQWVNYWLHTGHL-RGTDGTRRLRAARFITNLS 483 (515)
Q Consensus 422 ~~~DIH~GG~DL~FPHHEN--EiAQsea~~g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~ 483 (515)
...||-.||.|+.+ |++. |+|.- . +..+ -|-++.-.| ..+|+|||||.||.|-+++
T Consensus 187 ~~~~i~~gG~DQ~~-ni~~grdla~r--~-~~~~--~~~l~~plL~~~~G~KMsKS~~naI~L~d 245 (408)
T PRK05912 187 YGCDLQLGGSDQWG-NILSGRDLQRR--Y-GGKP--QFGLTMPLLTGLDGKKMGKSEGNAVWLDE 245 (408)
T ss_pred CCCCEEeccHHHHH-HHHHHHHHHHH--h-CCCC--eEEEecCCcCCCCCCcccCCCCCceeCCC
Confidence 36789999999995 8764 44433 2 3222 233333333 5678999999999996665
No 139
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=88.07 E-value=0.3 Score=52.78 Aligned_cols=58 Identities=16% Similarity=-0.030 Sum_probs=35.9
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEE-eeeeeeCCCcccccccceeccccc
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLH-TGHLRGTDGTRRLRAARFITNLSG 484 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH-~G~v~v~G~KMSks~Gnfit~~~l 484 (515)
..||-.||+|+.+ |++.=+=.++-. +..+ + +-++ .-....+|.|||||.||.|-+++-
T Consensus 186 ~~~iq~gG~DQ~~-ni~~grdl~~r~-~~~~-~-~~lt~PlL~g~dG~KMsKS~~naI~L~d~ 244 (410)
T PRK13354 186 DVDLQIGGTDQWG-NILMGRDLQRKL-EGEE-Q-FGLTMPLLEGADGTKMGKSAGGAIWLDPE 244 (410)
T ss_pred CCCEEEecHHHHH-HHHHHHHHHHHh-CCCC-c-eEeccCCccCCCCCccCCCCCCceeccCC
Confidence 5689999999987 554333333333 2221 2 4333 333367889999999998855443
No 140
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=87.36 E-value=0.33 Score=50.93 Aligned_cols=66 Identities=18% Similarity=0.057 Sum_probs=40.8
Q ss_pred chhhhhhcCCCceEeeecccccCCccchhHHHHhhhc---CC-CCcccEEEEeee----eeeCCCcccccccc-eec
Q psy13464 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFH---NQ-SQWVNYWLHTGH----LRGTDGTRRLRAAR-FIT 480 (515)
Q Consensus 413 SAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~---g~-~~~a~yWlH~G~----v~v~G~KMSks~Gn-fit 480 (515)
.-|+.+.|=...|+--+|.|+. ||+|--+-.+.-.. |. -+.+. -+|..+ ..++|+|||||.+| .|.
T Consensus 129 ~lqaaDil~~~~d~vpvG~DQ~-~h~elaRdia~r~n~~~~~~f~~P~-~l~~~~~~~l~gl~~~KMSKS~~~s~I~ 203 (328)
T TIGR00233 129 VLQAADILLYQADLVPVGIDQD-QHLELTRDLAERFNKKFKNFFPKPE-SLISKFFPRLMGLSGKKMSKSDPNSAIF 203 (328)
T ss_pred HHHHhhhhhcCCCeeecccccH-HHHHHHHHHHHHhhhhcCcccCCCh-hhhccccCCCCCCCCCcCCCCCCCCeEe
Confidence 5677777777889999999995 58865544444442 10 01122 233232 23445799999997 773
No 141
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=87.24 E-value=0.48 Score=51.76 Aligned_cols=67 Identities=12% Similarity=-0.092 Sum_probs=40.7
Q ss_pred chhhhhhcCCCceEeeecccccCCccchhHHHHhhh---cCCCC--cccEEEE--e-eeeeeCCCcccccccceec
Q psy13464 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAF---HNQSQ--WVNYWLH--T-GHLRGTDGTRRLRAARFIT 480 (515)
Q Consensus 413 SAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~---~g~~~--~a~yWlH--~-G~v~v~G~KMSks~Gnfit 480 (515)
.-|+.++|=..-|+--+|.|++. |+|--+-.+.-. +|.+. .+..-++ . -...++|+|||||.||.|.
T Consensus 138 vLqAADILly~ad~VPVG~DQ~q-HlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~ 212 (431)
T PRK12284 138 VLMAADILMFNAHKVPVGRDQIQ-HIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYDNTIP 212 (431)
T ss_pred HHHHhhhhhcCCCEEEEcchhHH-HHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCCCEee
Confidence 46777777777799999999974 776433333322 12111 1222232 1 2235678999999999993
No 142
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=84.91 E-value=0.54 Score=50.02 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=34.6
Q ss_pred ccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchh
Q psy13464 138 GSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDD 178 (515)
Q Consensus 138 ~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDidd 178 (515)
...|||||++.++..|+++|+++. .|+++.++...+|-|.
T Consensus 30 sG~~HIG~~~e~i~~D~i~R~lr~-~G~~v~~v~~~Dd~d~ 69 (353)
T cd00674 30 SGHIHIGNFREVITADLVARALRD-LGFEVRLIYSWDDYDR 69 (353)
T ss_pred CCCcccCccHHHHHHHHHHHHHHH-cCCCEEEEEEEcCCCc
Confidence 467999999999999999999985 7899999877776554
No 143
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=84.51 E-value=0.53 Score=47.89 Aligned_cols=69 Identities=20% Similarity=0.061 Sum_probs=40.0
Q ss_pred chhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCC-Cc-ccEEEEeeee-eeCCC-cccccccc-eecccc
Q psy13464 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQS-QW-VNYWLHTGHL-RGTDG-TRRLRAAR-FITNLS 483 (515)
Q Consensus 413 SAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~-~~-a~yWlH~G~v-~v~G~-KMSks~Gn-fit~~~ 483 (515)
.-|+.+++-...|+-.||+|+.. |.+-=+-.+.-. |.. .+ ..+-+++-.| .++|. |||||.+| .|.+++
T Consensus 139 ~lQaaD~~~l~~~~~~~G~DQ~~-~~~l~rd~a~k~-~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d 212 (292)
T PF00579_consen 139 LLQAADILLLKADLVPGGIDQRG-HIELARDLARKF-NYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDD 212 (292)
T ss_dssp HHHHHHHHHTTHSEEEEEGGGHH-HHHHHHHHHHHH-THHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTT
T ss_pred cccccceeeeccccccccchHHH-HHHHHHHHHhhh-cccccccCchheeeccccccCCccccCccCCccEEEEec
Confidence 34555555556679999999975 553322222222 321 01 2356666666 56788 99999999 664433
No 144
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=84.20 E-value=0.64 Score=47.55 Aligned_cols=55 Identities=9% Similarity=-0.119 Sum_probs=33.4
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCccccccccee
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFI 479 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfi 479 (515)
..|+-.||.|+.. |++-=+=.+.-..+. +.+.-.++.=...++|.|||||.||.+
T Consensus 153 ~~~~vp~G~DQ~~-~i~l~rdla~r~n~~-~~p~~l~~p~l~~l~G~KMSKS~~~~i 207 (273)
T cd00395 153 GCDIQPGGSDQWG-NITLGRELARRFNGF-TIAEGLTIPLVTKLDGPKFGKSESGPK 207 (273)
T ss_pred CCcEEEecHHHHH-HHHHHHHHHHHhCCC-CCCeEEeeccccCCCCCcCCCCCCCCc
Confidence 4589999999975 664333222222221 122223334444678999999999886
No 145
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=83.25 E-value=0.73 Score=48.28 Aligned_cols=67 Identities=18% Similarity=0.111 Sum_probs=41.0
Q ss_pred chhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCCC--cccccc-cceecccc
Q psy13464 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTDG--TRRLRA-ARFITNLS 483 (515)
Q Consensus 413 SAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G~--KMSks~-Gnfit~~~ 483 (515)
.-|+.+.+-...|+--||.|+.. |++--+-.+.-. +... + .-++.-.| .+.|. |||||. ||.|-+.|
T Consensus 158 ~lqaaDil~~~ad~vpvG~DQ~~-h~~l~Rdia~~~-n~~~-p-~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D 228 (329)
T PRK08560 158 LMQVADIFYLDVDIAVGGMDQRK-IHMLAREVLPKL-GYKK-P-VCIHTPLLTGLDGGGIKMSKSKPGSAIFVHD 228 (329)
T ss_pred HHHHHHHHHhCCCEEEechhHHH-HHHHHHHhhHhc-CCCC-c-eEEEcCccCCCCCCCCCCcCCCCCCeecccC
Confidence 34555666567889999999984 654433333332 3222 2 23333344 67777 999999 99994433
No 146
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=82.87 E-value=0.38 Score=48.73 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=32.5
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHH
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKI 180 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKi 180 (515)
-.||||||+.+..+.+.| +++.+++.+++|+|+++
T Consensus 13 ~lHiG~~rtal~~~l~Ar------~~~G~~ilRieDtD~~r 47 (240)
T cd09287 13 PLHLGHARAAILNGEYAK------MYGGKFILRFDDTDPRT 47 (240)
T ss_pred CccHHHHHHHHHHHHHHH------HcCCEEEEeeCcCCCCc
Confidence 479999999999999999 78999999999999987
No 147
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=82.54 E-value=1.1 Score=48.25 Aligned_cols=66 Identities=12% Similarity=-0.036 Sum_probs=38.3
Q ss_pred hhhhhhcCCCceEeeecccccCCccchhHHHHhhh-cCCCCcccEEEEeeee-ee-CC-Ccccccccc-eecccc
Q psy13464 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAF-HNQSQWVNYWLHTGHL-RG-TD-GTRRLRAAR-FITNLS 483 (515)
Q Consensus 414 AM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~-~g~~~~a~yWlH~G~v-~v-~G-~KMSks~Gn-fit~~~ 483 (515)
-|+.+.+-...||-.||.|+. ||++ +|---|- +|.. ...+.+|...| .+ +| +|||||.+| .|.++|
T Consensus 201 LQaaDil~l~adivpvG~DQ~-~~~~--LaRdia~~~~~~-~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D 271 (383)
T PTZ00126 201 MQCADIFYLKADICQLGMDQR-KVNM--LAREYCDKKKIK-KKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED 271 (383)
T ss_pred HHhhhhhccCCCEEEeCccHH-HHHH--HHHHHHHHhCCC-CCceeecccccccCCCCCCCCCcCCCCCeecCCC
Confidence 445555556778889999997 5554 4422221 1321 12245555555 45 34 699999987 574433
No 148
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=82.00 E-value=0.91 Score=47.89 Aligned_cols=67 Identities=16% Similarity=0.063 Sum_probs=40.4
Q ss_pred chhhhhhcCCCceEeeecccccCCccchhHHHHhhhc---CCC-CcccEEE--Eeeee-eeCCCcccccccceec
Q psy13464 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFH---NQS-QWVNYWL--HTGHL-RGTDGTRRLRAARFIT 480 (515)
Q Consensus 413 SAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~---g~~-~~a~yWl--H~G~v-~v~G~KMSks~Gnfit 480 (515)
.-|+.+.|=..-|+--+|+|+. ||+|--+-.+.-.. |.. +.+..-+ |.-.| .++|+|||||.||.|.
T Consensus 139 vLqAADIl~~~~d~VpvG~DQ~-qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg~KMSKS~~n~I~ 212 (332)
T PRK12556 139 ILMAADILLFQATHVPVGKDQI-QHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDGRKMSKSYGNVIP 212 (332)
T ss_pred HHHhhhhhhccCCEEEeccccH-HHHHHHHHHHHHHHHhccccCCCceeccccccccccCCCCCCCCCCCCCccc
Confidence 4556666666678999999998 48876333333321 210 1122222 32333 5678999999999883
No 149
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=81.83 E-value=1.1 Score=45.91 Aligned_cols=70 Identities=17% Similarity=0.049 Sum_probs=41.8
Q ss_pred chhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCC--CCcc-cEEEEe--eee-eeCC--Cccccccc-ceecccc
Q psy13464 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQ--SQWV-NYWLHT--GHL-RGTD--GTRRLRAA-RFITNLS 483 (515)
Q Consensus 413 SAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~--~~~a-~yWlH~--G~v-~v~G--~KMSks~G-nfit~~~ 483 (515)
.-|+.+.+-...|+--+|.|+. ||+|--+-.+.-.... ..+. -..+|+ ..| .+.| .|||||.| |.|-+++
T Consensus 127 ~lqaaDil~~~~~~vpvG~DQ~-~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d 205 (280)
T cd00806 127 VLQAADILLYKACLVPVGIDQD-PHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD 205 (280)
T ss_pred HHHHhhhhhccCCEEeeccccH-HHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeC
Confidence 4555666656668888899996 4776555444444210 0111 124443 222 4555 49999999 9995555
No 150
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=80.48 E-value=1.3 Score=46.70 Aligned_cols=68 Identities=15% Similarity=0.001 Sum_probs=45.6
Q ss_pred chhhhhhcCCCceEeeecccccCCccchhHHHHhhhc---CC-CCcccEEEEe--eeeeeCC-Ccccccccc-eecc
Q psy13464 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFH---NQ-SQWVNYWLHT--GHLRGTD-GTRRLRAAR-FITN 481 (515)
Q Consensus 413 SAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~---g~-~~~a~yWlH~--G~v~v~G-~KMSks~Gn-fit~ 481 (515)
+-|+...|=.+-++--.|.|+. ||-|--+-.++-.. |. -+.+.-.+|- -...+.| +|||||.+| .|.+
T Consensus 135 vlqAADILl~~a~~VPVG~DQ~-qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L 210 (314)
T COG0180 135 VLQAADILLYQATLVPVGEDQD-QHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKSDPNSAIFL 210 (314)
T ss_pred HHHHHHhhhccCCeeccCCCch-HHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCCCcccccCCCCeeec
Confidence 6788888887779999999997 68876544444442 10 0122334443 3456788 799999999 7733
No 151
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.40 E-value=1.1 Score=48.74 Aligned_cols=55 Identities=16% Similarity=0.021 Sum_probs=37.0
Q ss_pred eEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCCCcccccccc--eecccc
Q psy13464 425 DLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTDGTRRLRAAR--FITNLS 483 (515)
Q Consensus 425 DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G~KMSks~Gn--fit~~~ 483 (515)
||..||.|+.|.|------|-+ . |.. ..+-||.=.| ..+|.|||||.|| |.+.+.
T Consensus 182 dlq~GG~DQ~~ni~~grdl~rr-~-g~~--~~~~lt~PLL~~ldG~KmgKs~~~a~~~~s~~ 239 (401)
T COG0162 182 DLQLGGSDQWGNILAGRDLIRR-L-GQK--KVVGLTTPLLTGLDGKKMGKSEGGAVWLDSEK 239 (401)
T ss_pred chhcCChHHHHHHHHHHHHHHH-h-CCC--CeEEEEeccccCCCCCcccccCCCceEccCCC
Confidence 5999999999988732222222 2 432 3577886666 6789999999999 444443
No 152
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=73.72 E-value=2.2 Score=44.85 Aligned_cols=68 Identities=16% Similarity=0.036 Sum_probs=38.6
Q ss_pred chhhhhhcCCCceEeeecccccCCccchhHHHHhhhc---CCC-CcccEEEE---eeeeeeCCC--ccccccc---ceec
Q psy13464 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFH---NQS-QWVNYWLH---TGHLRGTDG--TRRLRAA---RFIT 480 (515)
Q Consensus 413 SAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~---g~~-~~a~yWlH---~G~v~v~G~--KMSks~G---nfit 480 (515)
.-|+.+.|-..-|+--+|+|+.+ |+|--+-.+.-.. |.. +.+...++ .-...++|. |||||.+ |.|-
T Consensus 128 ~lQaaDil~~~~divpvG~DQ~~-h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~ 206 (333)
T PRK00927 128 VLMAADILLYKADLVPVGEDQKQ-HLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTIN 206 (333)
T ss_pred HHHHHHHHhcCCCEEeeccchHH-HHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEE
Confidence 44555555567799999999965 7644333333221 100 11222222 223466776 9999999 7883
Q ss_pred c
Q psy13464 481 N 481 (515)
Q Consensus 481 ~ 481 (515)
+
T Consensus 207 l 207 (333)
T PRK00927 207 L 207 (333)
T ss_pred e
Confidence 3
No 153
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=73.33 E-value=2 Score=45.32 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=35.9
Q ss_pred hhhhhhcCCCceEeeecccccCCccchhHHHHhhhc---CCCCcccEEEEee-------ee-eeCC-Ccccccccceecc
Q psy13464 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFH---NQSQWVNYWLHTG-------HL-RGTD-GTRRLRAARFITN 481 (515)
Q Consensus 414 AM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~---g~~~~a~yWlH~G-------~v-~v~G-~KMSks~Gnfit~ 481 (515)
-|+.+.+=..-|+-.+|+|+. ||+|--+-.+.-.. |. + ++++.. .| .++| +|||||.+|.|.+
T Consensus 133 lqaaDIl~~~~d~vpvG~DQ~-~h~~laRdiA~~~n~~~~~-~---~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L 207 (333)
T PRK12282 133 SQAADITAFKATLVPVGDDQL-PMIEQTREIVRRFNSLYGT-D---VLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYL 207 (333)
T ss_pred HHHHHHHhhCCCEEEeccccH-HHHHHHHHHHHHHhhhcCC-c---cccCchhcccCCCcccCCCCCCcCCCCCCCeeee
Confidence 444443333568999999996 47654443433331 21 1 222111 22 4455 7999999998833
No 154
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=73.27 E-value=1.8 Score=46.39 Aligned_cols=56 Identities=18% Similarity=0.083 Sum_probs=34.8
Q ss_pred CCceEeeecccccCCccchhHHHHhhhc---CCCCcccEEEEeeee-eeCCCcccccc-cceec
Q psy13464 422 GQVDLHTGGIDLKFPHHENEEAQSCAFH---NQSQWVNYWLHTGHL-RGTDGTRRLRA-ARFIT 480 (515)
Q Consensus 422 ~~~DIH~GG~DL~FPHHENEiAQsea~~---g~~~~a~yWlH~G~v-~v~G~KMSks~-Gnfit 480 (515)
..-++--+|+|+. ||++--+-.+.-.. |... +. -+|.-+| .++|+|||||. +|.|.
T Consensus 202 ~~~~lvPvG~DQ~-~h~~ltRdiA~r~n~~~gf~~-P~-~l~~~~lpgL~G~KMSkS~~~s~I~ 262 (368)
T PRK12285 202 PKPTLVPVGIDQD-PHIRLTRDIAERLHGGYGFIK-PS-STYHKFMPGLTGGKMSSSKPESAIY 262 (368)
T ss_pred CCceEEEeccchH-HHHHHHHHHHHHHhhhcCCCC-ch-hHhhhcccCCCCCcCCCCCCCCeee
Confidence 3446889999995 58765444444331 3222 22 2333455 78899999998 57883
No 155
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=72.85 E-value=2.1 Score=48.07 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=26.5
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcc
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSI 168 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~ 168 (515)
...|+||+|+++.-|.+.|+++ +.|+++.
T Consensus 125 ~~~hiGh~r~~~~gd~l~r~~~-~~g~~v~ 153 (566)
T TIGR00456 125 GPLHIGHLRNAIIGDSLARILE-FLGYDVI 153 (566)
T ss_pred CCCchhhhHHHHHHHHHHHHHH-HCCCCee
Confidence 4589999999999999999998 7898886
No 156
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=70.48 E-value=2.2 Score=47.42 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=30.5
Q ss_pred ccccccCccchhhHHHHHHHHHHHHHhhhccccccc
Q psy13464 138 GSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSV 173 (515)
Q Consensus 138 ~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~ni 173 (515)
-..|||||++.+++.|+++|+++.- |+++.++.-.
T Consensus 34 sG~~HiG~~~e~~~~d~v~r~lr~~-G~~v~~i~~~ 68 (510)
T PRK00750 34 SGLPHIGNFREVARTDMVRRALRDL-GIKTRLIFFS 68 (510)
T ss_pred CCCcccccccchhhHHHHHHHHHHc-CCcEEEEEEE
Confidence 4579999999999999999999987 9999886433
No 157
>KOG0437|consensus
Probab=68.21 E-value=7.1 Score=45.69 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=49.7
Q ss_pred eEEEcCCcc--CCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhh
Q psy13464 54 KWYACGPTV--YDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSL 112 (515)
Q Consensus 54 ~~y~cgptv--yd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l 112 (515)
+.++-=|-+ ++..||||+.+.--.|...=|-| +.|++|.|=.++-.-+=+|-..|.+|
T Consensus 45 Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~r-L~Gk~vLfPfgFHCTGMPI~A~AdKL 104 (1080)
T KOG0437|consen 45 KFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYER-LQGKNVLFPFGFHCTGMPIKASADKL 104 (1080)
T ss_pred ceeEeccccccCceeeccceeehhhhHHHHHHHH-hcCceEEeecccccCCCccHHhHHHH
Confidence 334444444 58999999999999999999998 99999999999999999999888887
No 158
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=68.04 E-value=2.3 Score=45.61 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=23.5
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccc
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISS 172 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~n 172 (515)
..||||||.+|+.-|++.|..+ -.|+++-+++-
T Consensus 12 g~lHlGH~~~~l~ADv~aR~~r-~~G~~v~~~tG 44 (391)
T PF09334_consen 12 GDLHLGHLYPYLAADVLARYLR-LRGHDVLFVTG 44 (391)
T ss_dssp SS-BHHHHHHHHHHHHHHHHHH-HTT-EEEEEEE
T ss_pred CCCCCChhHHHHHHHHHHHHHh-hcccceeeEEe
Confidence 4589999999999999998876 34777666443
No 159
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.55 E-value=3.5 Score=46.62 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=28.9
Q ss_pred cccccccCccchhhHHHHHHHHHHHHHhhhccccccc
Q psy13464 137 VGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSV 173 (515)
Q Consensus 137 ~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~ni 173 (515)
+-..|||||+.+|+.-|++.|..+ ..|+++-+++-.
T Consensus 16 ~Ng~~HlGH~~~~l~ADv~aRy~R-l~G~~v~fvtGt 51 (558)
T COG0143 16 PNGPPHLGHLYTYLAADVYARYLR-LRGYEVFFLTGT 51 (558)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHH-hcCCeEEEEecc
Confidence 345689999999999999999987 448888886544
No 160
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=65.73 E-value=4 Score=47.61 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCCc--cccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 298 FNFRYELEYFESMEKFGVLPPT--RATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 298 ~~~~y~~~F~edm~aLNI~~PD--~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
+..+|.+.|.++|++||+.. | .+-+++ +|...++.++.+|.++|++|+ .+.-|+||...
T Consensus 118 ~~~~~~~~~~~~~~~lg~s~-Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~-~~~~v~wcp~~ 180 (800)
T PRK13208 118 LTDEDEKKFRELWRRLGLSV-DWSLEYQTISPEYRRISQKSFLDLYKKGLIYR-AEAPVLWCPRC 180 (800)
T ss_pred HHHHHHHHHHHHHHHhCeee-ccCCCcccCCHHHHHHHHHHHHHHHHCCCeee-cCcccccCCCC
Confidence 44459999999999999986 5 455555 599999999999999999998 78889998765
No 161
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=64.10 E-value=4.8 Score=47.49 Aligned_cols=57 Identities=11% Similarity=0.114 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCccccc--cc---ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 299 NFRYELEYFESMEKFGVLPPTRATR--VS---EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 299 ~~~y~~~F~edm~aLNI~~PD~~pR--aT---ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
..+|.+.+.+.|++||+.. | +-| .| ++...++.++.+|.++|++|+ ...-|++|...
T Consensus 120 ~~~~~~~~~~~~~~lG~s~-D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr-~~~~v~wcp~~ 181 (874)
T PRK05729 120 KEESGGTITNQLRRLGASC-D-WSRERFTMDEGLSKAVREVFVRLYEKGLIYR-GKRLVNWDPKL 181 (874)
T ss_pred HHHHHHHHHHHHHHhCcce-e-cCCCcccCCHHHHHHHHHHHHHHHHCCCEee-cCcccccCCCC
Confidence 3349999999999999986 5 332 23 588899999999999999998 77788887654
No 162
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=63.11 E-value=4.5 Score=47.58 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCCccccccc---ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 298 FNFRYELEYFESMEKFGVLPPTRATRVS---EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 298 ~~~~y~~~F~edm~aLNI~~PD~~pRaT---ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
++.+|.+.+.++|++||+...-.-+..| ++...++.++.+|.++|++|+ ...-|++|...
T Consensus 120 ~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f~~l~~~gliyr-~~~~v~w~p~~ 182 (861)
T TIGR00392 120 FALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYR-GLKPVYWSPRC 182 (861)
T ss_pred HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEee-cceeeecCCCc
Confidence 4445999999999999996421122233 588899999999999999998 77788887764
No 163
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=62.76 E-value=5.8 Score=45.91 Aligned_cols=66 Identities=11% Similarity=-0.055 Sum_probs=36.7
Q ss_pred hhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeC-C-Ccccccc-cceeccc
Q psy13464 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGT-D-GTRRLRA-ARFITNL 482 (515)
Q Consensus 414 AM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~-G-~KMSks~-Gnfit~~ 482 (515)
-|+.+.|-..-||--+|+|+. ||+|--+-.+.- +|.. ....-+|.-+| .+. | .|||||. ||.|-+.
T Consensus 166 LQAADIl~l~adivpvG~DQ~-qh~eLaRdia~~-~g~~-~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~ 235 (682)
T PTZ00348 166 MQCADIFFLKADICQLGLDQR-KVNMLAREYCDL-IGRK-LKPVILSHHMLAGLKQGQAKMSKSDPDSAIFME 235 (682)
T ss_pred HHhhcccccCCCEEEeCccHH-HHHHHHHHHHHH-hCCC-CCceecccccCcCCCCCCCcCCCCCCCCeeccc
Confidence 344455555677888999998 675432222222 2422 11234454333 343 3 5999999 6888433
No 164
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=62.63 E-value=5.4 Score=42.80 Aligned_cols=58 Identities=14% Similarity=0.001 Sum_probs=30.7
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEee-eeeeCCCcccccccceeccccc
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTG-HLRGTDGTRRLRAARFITNLSG 484 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G-~v~v~G~KMSks~Gnfit~~~l 484 (515)
.-||-.||.|+.+ |-+.=+-..+-..+... |=+..- +...+|.|||||.||.|.+++-
T Consensus 177 ~~di~~gG~DQ~~-ni~~g~dLar~~~~~~~---~~~t~pLl~~~dg~KmgKS~~~~i~l~~~ 235 (377)
T TIGR00234 177 NVDLQIGGSDQWG-NIRKGRDLIRRNLPSLG---FGLTVPLLTPADGEKMGKSGGGAVSLDEG 235 (377)
T ss_pred cCCeeEecchhHH-HHHHHHHHHHHhcCCCc---eeeceeeecCCCCCCccCCCCCcccCCcc
Confidence 3469999999954 32211112222212111 111111 2234689999999988865544
No 165
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=59.57 E-value=4.5 Score=43.96 Aligned_cols=19 Identities=5% Similarity=-0.279 Sum_probs=15.1
Q ss_pred eeCCCcccccccceecccc
Q psy13464 465 RGTDGTRRLRAARFITNLS 483 (515)
Q Consensus 465 ~v~G~KMSks~Gnfit~~~ 483 (515)
.++|+|||||.||.|.+.+
T Consensus 259 gLdg~KMSKS~~n~I~L~D 277 (398)
T PRK12283 259 GLDGQKMSKSYGNTIGLRE 277 (398)
T ss_pred CCCCCcCCCCCCCeeeCcC
Confidence 4578999999999995444
No 166
>PLN02381 valyl-tRNA synthetase
Probab=57.64 E-value=5.4 Score=48.29 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=53.4
Q ss_pred CCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeee-eCCCcccccccceeccccccc
Q psy13464 422 GQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR-GTDGTRRLRAARFITNLSGST 486 (515)
Q Consensus 422 ~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~-v~G~KMSks~Gnfit~~~li~ 486 (515)
.+.|+-.-|.|++|------+..+.+++|..||-+..+| |+|. -+|+|||||+||+|+|.++|+
T Consensus 607 ~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~h-G~V~D~~G~KMSKS~GNvIdP~~vi~ 671 (1066)
T PLN02381 607 YPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVIN 671 (1066)
T ss_pred CCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheec-ceEECCCCCCCCCCCCCCCCHHHHHh
Confidence 367888899999987554455566666787788888999 8886 689999999999999999999
No 167
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=55.55 E-value=6.4 Score=46.72 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCCc-cccccc---ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 298 FNFRYELEYFESMEKFGVLPPT-RATRVS---EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 298 ~~~~y~~~F~edm~aLNI~~PD-~~pRaT---ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
+..+|.+.+.++|++||+.- | .-+..| ++...++..+.+|.++|++|. ...-|.||...
T Consensus 77 ~~~~~~~~~~~~~~~lG~~~-DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyr-g~~~v~wcp~~ 139 (897)
T PRK12300 77 IVEYFSEEAKEDMKRIGYSI-DWRREFTTTDPEYSKFIEWQFRKLKEKGLIVK-GSHPVRYCPND 139 (897)
T ss_pred HHHHhHHHHHHHHHHhCcEE-eCCCCeECCChhHHHHHHHHHHHHHHCCCEec-CCEeeeeCCCC
Confidence 44459999999999999975 4 112223 688899999999999999998 67778887654
No 168
>PLN02486 aminoacyl-tRNA ligase
Probab=55.08 E-value=36 Score=36.89 Aligned_cols=44 Identities=20% Similarity=0.419 Sum_probs=29.1
Q ss_pred CCceeEEEcCCccCC-CCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCC
Q psy13464 50 KNHLKWYACGPTVYD-SPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTD 100 (515)
Q Consensus 50 ~~~v~~y~cgptvyd-~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTD 100 (515)
++.+..|+ |=.+-+ ++|||| +|.+..++ +|++.+|..+... |||
T Consensus 71 ~~~~~vYt-G~~PSg~~lHlGH---lv~~~~~~-~lQ~~~~~~~~I~--iaD 115 (383)
T PLN02486 71 GEKFYLYT-GRGPSSEALHLGH---LIPFMFTK-YLQDAFKVPLVIQ--LTD 115 (383)
T ss_pred CCCeEEEe-CCCCCCccccHHH---HHHHHHHH-HHHHhCCCeEEEE--ecC
Confidence 34566665 544444 699999 77788777 5555777655555 776
No 169
>KOG1148|consensus
Probab=53.95 E-value=21 Score=40.90 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeee
Q psy13464 300 FRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYI 346 (515)
Q Consensus 300 ~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe 346 (515)
.+|.+.+.+...-||-.+ -..+..|++-+++-++-..||++|.||+
T Consensus 297 e~yf~sI~e~V~WLG~~P-~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 297 EEYFESIKEMVAWLGFEP-YKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred HHHHHHHHHHHHHhCCCc-eeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 678899999999999995 8889999999999999999999999998
No 170
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=53.09 E-value=7.3 Score=46.70 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=47.7
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeee-CCCcccccccceeccccccc
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRG-TDGTRRLRAARFITNLSGST 486 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v-~G~KMSks~Gnfit~~~li~ 486 (515)
+.|+++.|.|++|.=----++.+.+++|..||-+..+| |+|.- +|+|||||+||+|+|.++++
T Consensus 538 P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~H-G~v~d~~G~KMSKSlGNvIdP~~ii~ 601 (995)
T PTZ00419 538 PTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLH-AMVRDSQGEKMSKSKGNVIDPLEVIE 601 (995)
T ss_pred CCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhcc-ceEECCCCCCcccCCCCcCChHHHhc
Confidence 67999999999983222223333444565566677888 88876 89999999999999999999
No 171
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=52.48 E-value=16 Score=34.04 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=23.7
Q ss_pred HHHHHHHhCCCcEEEEEccCCcchHHHHHHHh
Q psy13464 80 IRRILEHYFHIHSIVISSVTDIDDKIINKANS 111 (515)
Q Consensus 80 l~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~ 111 (515)
|+|+|| ..|+|+.++.++ -|+.|+..|++
T Consensus 12 Lar~LR-~lG~Dt~~~~~~--~D~~il~~A~~ 40 (147)
T PF01927_consen 12 LARWLR-LLGYDTLYSRDI--DDDEILELARE 40 (147)
T ss_pred HHHHHH-HCCCcEEEeCCC--ChHHHHHHhhh
Confidence 689999 899999999976 45668887764
No 172
>KOG0434|consensus
Probab=52.08 E-value=92 Score=36.81 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=41.5
Q ss_pred ceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHH
Q psy13464 52 HLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKI 105 (515)
Q Consensus 52 ~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKI 105 (515)
+.+.|=-=|-.-+.||-||.-.-..-|+.-||.- +.|+.|.-=-+-+.++-++
T Consensus 39 ~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~-~~G~hVeRRFGWD~HGlPV 91 (1070)
T KOG0434|consen 39 KFTFYDGPPFATGLPHYGHILASTIKDIVTRYAT-QTGHHVERRFGWDTHGLPV 91 (1070)
T ss_pred ceeeccCCccccCCCccchhhhhhHHHHHHHHhh-ccccceeeecccccCCCcc
Confidence 3455554455668999999999999999999997 8899998777777666443
No 173
>PLN02610 probable methionyl-tRNA synthetase
Probab=50.28 E-value=13 Score=43.86 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=8.4
Q ss_pred Hhhhhchhhhhhccccccc
Q psy13464 240 LLALGVQIKDQKCEATWQF 258 (515)
Q Consensus 240 ~~dil~~~LD~~~~~~~~~ 258 (515)
..+..-.|++.. .-|..
T Consensus 473 l~~~~NkYIe~~--kPW~L 489 (801)
T PLN02610 473 ISSEGNAYLQES--QFWKL 489 (801)
T ss_pred HHHHHHHHHHhc--Cchhh
Confidence 344555566633 44543
No 174
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=50.09 E-value=9.9 Score=45.41 Aligned_cols=59 Identities=12% Similarity=0.056 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHHcCCCCCc-cccccc---ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 298 FNFRYELEYFESMEKFGVLPPT-RATRVS---EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 298 ~~~~y~~~F~edm~aLNI~~PD-~~pRaT---ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
+..+|...+.++|++||+.. | .-...| +|...++..+.+|.++|++|. ...-|+||...
T Consensus 116 ~~~~~~~~~~~~~~~lG~s~-DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~-g~~~v~wcp~~ 178 (938)
T TIGR00395 116 IVEYFSREAESACKSMGYSI-DWRRSFKTTDPYYDRFIEWQMNKLKELGLIVK-GEHPVRYCPKD 178 (938)
T ss_pred HHHHHHHHHHHHHHHhCceE-ECCCCccCCChhHHHHHHHHHHHHHHCCCEec-CCeeEeecCCC
Confidence 33458899999999999986 4 122233 588899999999999999998 67788887765
No 175
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=49.97 E-value=5.4 Score=45.21 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=30.7
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHH
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKI 180 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKi 180 (515)
-.||||||+.+....+.| .++-+++..++|+|.|+
T Consensus 113 ~LHIGharaalln~~~Ar------~~~G~~iLRidDTDpk~ 147 (567)
T PRK04156 113 PLHLGHARAAILNDEYAK------MYGGKFILRFEDTDPRT 147 (567)
T ss_pred CccHHHHHHHHHHHHHHH------HcCCEEEEeEccCCCCc
Confidence 469999999999999988 57888999999999865
No 176
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=49.87 E-value=8.2 Score=46.71 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCCc----ccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 298 FNFRYELEYFESMEKFGVLPPT----RATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 298 ~~~~y~~~F~edm~aLNI~~PD----~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
|..+|.+.+.+.|++||+.. | .++---+|...++.++.+|.++|++|+ ...-|+||...
T Consensus 132 ~~~~~~~~~~~~~~~lG~s~-Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr-~~~~v~wcp~~ 194 (1052)
T PRK14900 132 WKEQYGSRIGEQHKALGASL-DWQRERFTMDEGLSRAVREVFVRLHEEGLIYR-EKKLINWCPDC 194 (1052)
T ss_pred HHHHHHHHHHHHHHHhchhe-ecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe-ccceeccCCCC
Confidence 55669999999999999986 5 222333699999999999999999998 67778887654
No 177
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=47.98 E-value=12 Score=44.48 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHcCCCCC-ccccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 298 FNFRYELEYFESMEKFGVLPP-TRATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 298 ~~~~y~~~F~edm~aLNI~~P-D~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
++.+|.+.+.++|++||+... +..-++. +|...+++++.+|.++|++|+ ...-||+|...
T Consensus 129 ~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~-~~~~v~w~p~~ 191 (912)
T PRK05743 129 YALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYK-GLKPVYWCPDC 191 (912)
T ss_pred HHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEe-cceeEecCCCc
Confidence 455599999999999999531 2222233 688899999999999999998 77889998765
No 178
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=47.83 E-value=8.8 Score=46.01 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCCccccccc---ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 298 FNFRYELEYFESMEKFGVLPPTRATRVS---EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 298 ~~~~y~~~F~edm~aLNI~~PD~~pRaT---ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
|+.+|.+.+.+.+++||+.-.-.-+..| ++...++..+.+|.++|++|+ ...-||++...
T Consensus 137 ~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l~~kGliyr-~~kpV~Wcp~~ 199 (961)
T PRK13804 137 YALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYR-GSKPVMWSVVE 199 (961)
T ss_pred HHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe-CCcceecCCCC
Confidence 4555999999999999997522223333 588899999999999999998 77788887764
No 179
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=47.09 E-value=11 Score=44.52 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHHHcCCCCCccccc---cc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 298 FNFRYELEYFESMEKFGVLPPTRATR---VS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 298 ~~~~y~~~F~edm~aLNI~~PD~~pR---aT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
+..+|.+.+.+.|++||+.. | +-| ++ +|.+.++.++.+|.++|++|+ ...-|+||...
T Consensus 116 ~~~~~~~~~~~~~~~lG~s~-D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~-~~~~v~wcp~~ 178 (861)
T TIGR00422 116 WKEESGGTIKNQIKRLGASL-D-WSRERFTMDEGLSKAVKEAFVRLYEKGLIYR-GEYLVNWDPKL 178 (861)
T ss_pred HHHHHHHHHHHHHHHhCeee-e-cCCCcCcCCHHHHHHHHHHHHHHHHCCCeee-cCcccccCCCC
Confidence 44459999999999999986 6 343 33 589999999999999999998 67778887654
No 180
>PLN02886 aminoacyl-tRNA ligase
Probab=43.93 E-value=20 Score=38.96 Aligned_cols=34 Identities=32% Similarity=0.181 Sum_probs=25.2
Q ss_pred chhhhhhcCCCceEeeecccccCCccchhHHHHhh
Q psy13464 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCA 447 (515)
Q Consensus 413 SAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea 447 (515)
.-|+.++|=...|+--+|.|+. ||+|--+-.++-
T Consensus 174 vLqAADILl~~a~~VPVG~DQ~-qH~eLtRdiA~r 207 (389)
T PLN02886 174 VLMASDILLYQADLVPVGEDQK-QHLELTRDIAER 207 (389)
T ss_pred HHHHhhhhhcCCCeEEEccchH-HHHHHHHHHHHH
Confidence 5677788878889999999997 588654444443
No 181
>KOG3846|consensus
Probab=43.38 E-value=64 Score=34.79 Aligned_cols=125 Identities=21% Similarity=0.203 Sum_probs=69.2
Q ss_pred chhHhhhhhhhHHHHHhhccCCccccchh-hhhh-hh-HHHHHHHHHHHHHcCCCCC----cccccccccHHHHHHHHHH
Q psy13464 265 SDRVFISLPLYLILIQVSLLGPLTLRTVV-FEFL-FN-FRYELEYFESMEKFGVLPP----TRATRVSEFIPHIQSFIQT 337 (515)
Q Consensus 265 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~y~~~F~edm~aLNI~~P----D~~pRaTehI~~iie~I~k 337 (515)
.-.++-+|+--|-+.-.|++-|-..|--. +|-+ |- ..| +|...++--|+.+- -+.||+.|---.++++.+.
T Consensus 130 EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhY--AiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~ 207 (465)
T KOG3846|consen 130 EVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHY--AIESQCKLHGISPENSMIQIEPREGEETLRTEDILDT 207 (465)
T ss_pred hhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHH--HHHhhhhhcCCChHHheEEecccccccchhHHHHHHH
Confidence 34566678887778888888887776432 4432 11 222 33334443344432 3458888766667777777
Q ss_pred HHHCCCeeee--cC-----CcEEEeccCCC----CcceecccCCCC--C--ccCcccCccCcccccccc
Q psy13464 338 LLDTKQAYIG--SD-----HSVYFDVDSFP----HYFKLWGRNENI--T--QHAVKRSPFDFALWKSAK 391 (515)
Q Consensus 338 LidnG~AYe~--kd-----GsVYFDv~~~~----~YG~Ls~~~~~~--t--~~~~Kr~~~DFaLWK~~~ 391 (515)
+.+||--... =. -..|||+..+. .-|.+.+.|+.- . ..+--.=.-|||-|...+
T Consensus 208 IEkngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYK 276 (465)
T KOG3846|consen 208 IEKNGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYK 276 (465)
T ss_pred HHhcCCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeeec
Confidence 7777742110 01 24788988754 346677777611 1 111111125777776553
No 182
>PLN02943 aminoacyl-tRNA ligase
Probab=42.87 E-value=12 Score=44.86 Aligned_cols=34 Identities=21% Similarity=0.117 Sum_probs=28.3
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhccccccc
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSV 173 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~ni 173 (515)
..+|+|||+||+..|++-|.-+ .-|+++.+++--
T Consensus 101 G~lHiGHa~~~~~~D~~~Ry~r-m~G~~vl~~~G~ 134 (958)
T PLN02943 101 GSLHMGHAMFVTLEDIMVRYNR-MKGRPTLWIPGT 134 (958)
T ss_pred CchhHHHHHHHHHHHHHHHHHH-hcCCeeecCCCC
Confidence 3489999999999999999876 589999886533
No 183
>PLN02882 aminoacyl-tRNA ligase
Probab=42.62 E-value=11 Score=46.11 Aligned_cols=60 Identities=12% Similarity=0.188 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHcCCCC-Cccccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 298 FNFRYELEYFESMEKFGVLP-PTRATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 298 ~~~~y~~~F~edm~aLNI~~-PD~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
+..+|.+.+.+.+++||+.- -+..-++. +|++.++.++.+|.++|++|+ ...-|+||...
T Consensus 122 ~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~~kGliyr-~~~~v~wcp~~ 184 (1159)
T PLN02882 122 IVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYK-GFKVMPYSTAC 184 (1159)
T ss_pred HHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHHHCCCEEe-cceeEeecCCC
Confidence 34459999999999999532 14444444 699999999999999999998 77889998764
No 184
>KOG1149|consensus
Probab=42.56 E-value=39 Score=37.65 Aligned_cols=63 Identities=22% Similarity=0.356 Sum_probs=49.1
Q ss_pred ccchhhhhhhhHHH--------------------HHHHHHHHHHcCCCCCcccccccc---------cHHHHHHHHHHHH
Q psy13464 289 LRTVVFEFLFNFRY--------------------ELEYFESMEKFGVLPPTRATRVSE---------FIPHIQSFIQTLL 339 (515)
Q Consensus 289 ~~~~~~~~~~~~~y--------------------~~~F~edm~aLNI~~PD~~pRaTe---------hI~~iie~I~kLi 339 (515)
+||--|.++|++.| .++..++++-+||.. |.=|++.. -.+.-..++++|+
T Consensus 51 LRTALfNYLfArk~gGkFiLRiEDTDq~R~v~gs~e~i~~~L~w~nl~~-DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll 129 (524)
T KOG1149|consen 51 LRTALFNYLFARKKGGKFILRIEDTDQKRLIRGSEEAIYEDLKWANLDW-DEGPGVGGPFGPYEQSERLEIYKKYAEKLL 129 (524)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeccccccccccchHHHHHHHHHhcCCCc-ccCCCcCCCCCchhhHHHHHHHHHHHHHHH
Confidence 47777888888544 467789999999995 98998872 3446678999999
Q ss_pred HCCCeeeecCCcEEEeccC
Q psy13464 340 DTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 340 dnG~AYe~kdGsVYFDv~~ 358 (515)
+.|+||. -|+.+.
T Consensus 130 ~sG~AYr------CFCs~~ 142 (524)
T KOG1149|consen 130 ESGHAYR------CFCSEE 142 (524)
T ss_pred hcCCeeE------eccCHH
Confidence 9999997 566554
No 185
>PLN02843 isoleucyl-tRNA synthetase
Probab=42.34 E-value=14 Score=44.46 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHcCCCCC-ccccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 298 FNFRYELEYFESMEKFGVLPP-TRATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 298 ~~~~y~~~F~edm~aLNI~~P-D~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
|+.+|.+.+.++|++||+.-. +..-++. ++...++..+.+|.++|++|+ ...-||++.+.
T Consensus 113 ~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~GlIyr-~~kpV~Wcp~~ 175 (974)
T PLN02843 113 FAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYR-GRKPVHWSPSS 175 (974)
T ss_pred HHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCCCEEe-cceeeeecCCC
Confidence 566699999999999999531 2222333 588899999999999999998 77889998875
No 186
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=41.95 E-value=14 Score=44.31 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=28.8
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhccccccc
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSV 173 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~ni 173 (515)
.+|+|||+|++..|++-|..+ ..|+++...+--
T Consensus 55 ~lH~GH~l~~t~kD~i~Ry~r-m~G~~v~~~~Gw 87 (975)
T PRK06039 55 LPHYGHLLTRTIKDVVPRYKT-MKGYKVERRAGW 87 (975)
T ss_pred CccHhhhHhhHHHHHHHHHHH-hCCCcccCcCCc
Confidence 599999999999999999876 789999876554
No 187
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=40.56 E-value=8.4 Score=43.57 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHHcCCCCCccccccc---ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 298 FNFRYELEYFESMEKFGVLPPTRATRVS---EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 298 ~~~~y~~~F~edm~aLNI~~PD~~pRaT---ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
++.++.+.+.++|++||+.-.-..+..| ++...++..+.+|.++|++|+ ...-|++|...
T Consensus 107 ~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr-~~~pv~w~p~~ 169 (601)
T PF00133_consen 107 WAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYR-GKKPVNWCPSC 169 (601)
T ss_dssp HHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEE-EEEEEEEETTT
T ss_pred hhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEe-eCCCCCcCccc
Confidence 4445999999999999997522223334 588899999999999999998 67789998765
No 188
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=38.56 E-value=61 Score=33.25 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=23.9
Q ss_pred cCCccCC-CCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEc
Q psy13464 58 CGPTVYD-SPHIGHAVCNVKLDIIRRILEHYFHIHSIVISS 97 (515)
Q Consensus 58 cgptvyd-~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~N 97 (515)
||=.+=+ .+|||| ||.+..++++.+ .|+++.++.+
T Consensus 4 ~G~~PTg~~lHlGh---~~~l~~~~~lq~--~g~~~~~~I~ 39 (273)
T cd00395 4 CGIDPTADSLHIGH---LIGLLTFRRFQH--AGHRPIFLIG 39 (273)
T ss_pred EeEcCCCCCccHHH---HHHHHHHHHHHH--CCCCEEEEEe
Confidence 3433336 799999 566777776654 5888888765
No 189
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.61 E-value=19 Score=41.08 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=26.3
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccc
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVI 170 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v 170 (515)
..|+||+||-+.=|.+-|+|+ +.|+++.-.
T Consensus 131 plHiGHlR~aiiGDsLaril~-~~Gy~V~r~ 160 (577)
T COG0018 131 PLHIGHLRNAIIGDSLARILE-FLGYDVTRE 160 (577)
T ss_pred CcccchhhhhHHHHHHHHHHH-HcCCCeeEE
Confidence 469999999999999999996 889998653
No 190
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=35.48 E-value=40 Score=32.73 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCCcEEEEEccCCcchHHHHHHHh
Q psy13464 79 IIRRILEHYFHIHSIVISSVTDIDDKIINKANS 111 (515)
Q Consensus 79 vl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~ 111 (515)
=|+|+|| ..||++.|..+ .=|++|+.-|..
T Consensus 17 ~LARwLR-llGydt~~~~~--~~d~~i~~i~~~ 46 (165)
T COG1656 17 KLARWLR-LLGYDTVYSSN--ESDDEIILIAKK 46 (165)
T ss_pred HHHHHHH-HcCCceeeecc--CCcHHHHHHHhc
Confidence 4899999 99999999983 446777766653
No 191
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=33.71 E-value=24 Score=39.88 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=26.5
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccc
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVI 170 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v 170 (515)
...|+||+||-+.=|.+.|+|+ +.|+++.-.
T Consensus 126 kplHvGH~R~aiiGd~l~ril~-~~G~~V~r~ 156 (562)
T PRK12451 126 KPFSMGHLRSTMIGNALKHIAE-KCGYEVVGI 156 (562)
T ss_pred CCcccchhhhHHHHHHHHHHHH-HCCCCeEEE
Confidence 4579999999999999999996 788887654
No 192
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=33.26 E-value=56 Score=29.35 Aligned_cols=32 Identities=9% Similarity=0.183 Sum_probs=23.4
Q ss_pred ceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEE
Q psy13464 52 HLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSI 93 (515)
Q Consensus 52 ~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~ 93 (515)
.|++|+||+++ .+-.+++.|++.|+ ..-..+.
T Consensus 76 avDiftCg~~~---------~p~~a~~~l~~~f~-~~~~~~~ 107 (112)
T TIGR03330 76 AVDVFTCGDHS---------DPEKAFEYLVEALK-PKRVEVR 107 (112)
T ss_pred EEEEEecCCCC---------CHHHHHHHHHHHhC-CCeEEEE
Confidence 58999999975 37778888888887 4444443
No 193
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=32.80 E-value=17 Score=38.45 Aligned_cols=36 Identities=22% Similarity=0.115 Sum_probs=28.1
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCc
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTD 175 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTD 175 (515)
...|+||+||-+.=|.+.|+++ +.|+++.-..=+-|
T Consensus 33 kplHvGHlR~~iiGd~laril~-~~G~~V~r~nyigD 68 (354)
T PF00750_consen 33 KPLHVGHLRNTIIGDSLARILE-AAGYDVTRENYIGD 68 (354)
T ss_dssp SS-BHHHHHHHHHHHHHHHHHH-HTTEEEEEEEEEBT
T ss_pred CCCcCCcchhhhhhHHHHHHHH-HcCCeeeeEEEECC
Confidence 4579999999999999999996 88888865533333
No 194
>PLN02413 choline-phosphate cytidylyltransferase
Probab=32.55 E-value=59 Score=34.29 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=27.0
Q ss_pred CCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEcc
Q psy13464 49 NKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSV 98 (515)
Q Consensus 49 ~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~Ni 98 (515)
.++.+.+|+.| ++|-.|.||++.+ ++.-+ .|-.+..|.++
T Consensus 24 ~~r~~rVyvdG--~FDLfH~GHir~L------~qAK~--lg~~d~LIVGV 63 (294)
T PLN02413 24 SDRPVRVYADG--IYDLFHFGHARSL------EQAKK--LFPNTYLLVGC 63 (294)
T ss_pred CCCceEEEEeC--chhhCCHHHHHHH------HHHHH--hCCCCEEEEEe
Confidence 45678999975 8999999999863 33222 33235566665
No 195
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=31.11 E-value=63 Score=29.67 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=25.5
Q ss_pred ceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEE
Q psy13464 52 HLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVI 95 (515)
Q Consensus 52 ~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V 95 (515)
.|++|+||+++. +..+++.|++.|+ ..-.++..+
T Consensus 79 avDiftCg~~~~---------p~~a~~~L~~~l~-~~~~~~~~~ 112 (123)
T PRK01706 79 AIDCYTCGTTVE---------PQIAIDYIVSILK-PNEMHIKRL 112 (123)
T ss_pred EEEEEecCCCCC---------HHHHHHHHHHHhC-CCeEEEEEE
Confidence 589999999764 5788899999887 555555444
No 196
>PLN02286 arginine-tRNA ligase
Probab=30.26 E-value=29 Score=39.36 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=26.1
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccc
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVI 170 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v 170 (515)
.-.|+||+||-+.=|.+.|+++ +.|+++.-.
T Consensus 130 kplHvGHlRsaiiGdsLaril~-~~G~~V~r~ 160 (576)
T PLN02286 130 KEMHVGHLRSTIIGDTLARMLE-FSGVEVLRR 160 (576)
T ss_pred CCCccccccchhhHHHHHHHHH-HcCCceEEE
Confidence 4479999999999999999996 778877543
No 197
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=29.03 E-value=70 Score=26.84 Aligned_cols=42 Identities=17% Similarity=0.374 Sum_probs=28.4
Q ss_pred HHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCe-eeecCCcEEEec
Q psy13464 306 YFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQA-YIGSDHSVYFDV 356 (515)
Q Consensus 306 F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~A-Ye~kdGsVYFDv 356 (515)
|+.|+.++ .|| .--+++..++..|++.|-+ |+.+....+|.+
T Consensus 21 YfkD~~k~---~pd------~k~R~vKKi~~~LV~Eg~l~yWSSGSTTmYgl 63 (67)
T PF08679_consen 21 YFKDFYKA---FPD------AKPREVKKIVNELVNEGKLEYWSSGSTTMYGL 63 (67)
T ss_dssp EHHHHHHH----TT------S-HHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred eHHHHHHH---CCC------cCHHHHHHHHHHHHhhCeEEEEcCCCcEEecC
Confidence 35566555 456 3455889999999999987 885555566654
No 198
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=28.50 E-value=63 Score=34.84 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=24.6
Q ss_pred CceeEE-EcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEE
Q psy13464 51 NHLKWY-ACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVI 95 (515)
Q Consensus 51 ~~v~~y-~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V 95 (515)
+.+.+| -++|| +.+||||. +.+.-++++ ++ .|+++.+.
T Consensus 65 ~~~~iytG~~PS--G~lHLGh~---~~~~~~~~l-Q~-~g~~~~i~ 103 (368)
T PRK12285 65 KPFAVYTGFMPS--GPMHIGHK---MVFDELKWH-QE-FGANVYIP 103 (368)
T ss_pred CCeEEEEccCCC--CCccHHHH---HHHHHHHHH-Hh-cCCCEEEE
Confidence 344555 46788 68999994 556655555 43 68776555
No 199
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=28.45 E-value=37 Score=38.23 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=56.8
Q ss_pred CCCCCCcccccchhhhhhcCCCceEeeecccccCCc----cchhHHHHhhhcCCCCc-ccE-EEEeeeeeeCCCcccccc
Q psy13464 402 GKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPH----HENEEAQSCAFHNQSQW-VNY-WLHTGHLRGTDGTRRLRA 475 (515)
Q Consensus 402 G~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPH----HENEiAQsea~~g~~~~-a~y-WlH~G~v~v~G~KMSks~ 475 (515)
|.|--.|.+|= +|-...|| +|.=..|.||.=|- .-+++|+ +++.|..|. ..| |+| |..+|+|||||+
T Consensus 207 g~~KL~WkvdW-~~RW~~lg--V~~Ep~GkDH~~~ggsy~~~~~ia~-~~l~~~~P~~~~ye~v~---L~~~g~KMSKS~ 279 (515)
T TIGR00467 207 GAIKLPWRVDW-PARWKIEK--VTFEPAGKDHAAAGGSYDTGVNIAK-EIFQYSPPVTVQYEWIS---LKGKGGKMSSSK 279 (515)
T ss_pred CCcccCCCCCc-HhhHhhhC--cccccCCCCccCccCCchhHHHHHH-HHhCCCCCcCcEEEEEE---EcCCCccccCCC
Confidence 44445555552 46666664 34455566654432 2377787 565443221 145 777 556778999999
Q ss_pred cceeccccccccccCccccCC
Q psy13464 476 ARFITNLSGSTIGYTRDTCAG 496 (515)
Q Consensus 476 Gnfit~~~li~~~y~~D~~~~ 496 (515)
||+||++++++. |+.|+.|-
T Consensus 280 Gn~itl~dll~~-~~pdalR~ 299 (515)
T TIGR00467 280 GDVISVKDVLEV-YTPEITRF 299 (515)
T ss_pred CCCccHHHHHHH-cCHHHHHH
Confidence 999999999999 99997664
No 200
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=28.22 E-value=1.2e+02 Score=33.18 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=27.8
Q ss_pred CCceeEEEcCCccCC-CCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEc
Q psy13464 50 KNHLKWYACGPTVYD-SPHIGHAVCNVKLDIIRRILEHYFHIHSIVISS 97 (515)
Q Consensus 50 ~~~v~~y~cgptvyd-~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~N 97 (515)
++.+..|+ |=.+=+ ++|||| +|.+-.++++.+ .|+++.++.+
T Consensus 31 ~~~~~iy~-G~dPT~~sLHlGh---lv~l~~l~~lq~--~G~~~~~lig 73 (410)
T PRK13354 31 GKPLTLYL-GFDPTAPSLHIGH---LVPLMKLKRFQD--AGHRPVILIG 73 (410)
T ss_pred CCCcEEEE-cccCCCCCcchhh---HHHHHHHHHHHH--cCCeEEEEEc
Confidence 45566664 533333 599999 666667777665 6888877773
No 201
>KOG1247|consensus
Probab=26.32 E-value=34 Score=37.97 Aligned_cols=44 Identities=14% Similarity=-0.034 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCCCCCccccccc--ccHHHHHHHHHHHHHCCCeee
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVS--EFIPHIQSFIQTLLDTKQAYI 346 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaT--ehI~~iie~I~kLidnG~AYe 346 (515)
|+..+.+.-+-.+|.+ |.|.|+| .+-+..|+++.+|.+|||.-+
T Consensus 86 yh~ihk~vy~Wf~Idf-D~fgrtTT~~qT~i~Q~iF~kl~~ng~~se 131 (567)
T KOG1247|consen 86 YHGIHKVVYDWFKIDF-DEFGRTTTKTQTEICQDIFSKLYDNGYLSE 131 (567)
T ss_pred cchhHHHHHHhhcccc-cccCcccCcchhHHHHHHhhchhhcCCccc
Confidence 8888888888889997 9999988 477788999999999998865
No 202
>KOG2638|consensus
Probab=26.31 E-value=56 Score=36.23 Aligned_cols=28 Identities=7% Similarity=0.221 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHhCCCcEEEEEccCCcc
Q psy13464 73 CNVKLDIIRRILEHYFHIHSIVISSVTDID 102 (515)
Q Consensus 73 ~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiD 102 (515)
++...=+|-++|. .|.+..||.||+..+
T Consensus 223 sl~nSG~Ld~lla--qGkEylFVSNiDNLG 250 (498)
T KOG2638|consen 223 SLHNSGLLDKLLA--QGKEYLFVSNIDNLG 250 (498)
T ss_pred HHhccchHHHHHh--CCceEEEEecccccc
Confidence 4445567888886 799999999998875
No 203
>KOG1148|consensus
Probab=25.95 E-value=72 Score=36.88 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=45.3
Q ss_pred CccCCCCCCcchhhHH----------------------------HHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHh
Q psy13464 60 PTVYDSPHIGHAVCNV----------------------------KLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANS 111 (515)
Q Consensus 60 ptvyd~~HiGhaR~~v----------------------------~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~ 111 (515)
|-+++..|||||...- .|+-|.+..+ ..||+..-|.-..|.=|++-.-|.+
T Consensus 255 PEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~-WLG~~P~kvTysSDyFdqLy~~av~ 333 (764)
T KOG1148|consen 255 PEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVA-WLGFEPYKVTYSSDYFDQLYELAVE 333 (764)
T ss_pred CCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHH-HhCCCceeeecchhHHHHHHHHHHH
Confidence 7889999999997532 5778888887 8899999999999999999999998
Q ss_pred hh
Q psy13464 112 LK 113 (515)
Q Consensus 112 l~ 113 (515)
|+
T Consensus 334 LI 335 (764)
T KOG1148|consen 334 LI 335 (764)
T ss_pred HH
Confidence 85
No 204
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=25.93 E-value=81 Score=29.13 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=23.8
Q ss_pred ceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEE
Q psy13464 52 HLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIV 94 (515)
Q Consensus 52 ~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~ 94 (515)
.|++|+||++. .+-.+++.|++.|+ ..-.++..
T Consensus 89 avDiftCg~~~---------~p~~a~~~L~~~f~-~~~~~~~~ 121 (127)
T PRK00458 89 TVDVYTCGEHT---------DPQKAFEYIVSKLK-PKRYTVNY 121 (127)
T ss_pred EEEEEecCCCC---------CHHHHHHHHHHHhC-CCEEEEEE
Confidence 59999999976 34688888888887 44444433
No 205
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=24.78 E-value=98 Score=29.12 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=25.3
Q ss_pred ceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEE
Q psy13464 52 HLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVI 95 (515)
Q Consensus 52 ~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V 95 (515)
.|++|+||+++. +-..++.|++.|+ ..-.++..+
T Consensus 77 avDIftCg~~~~---------p~~a~~~L~~~f~-~~~~~~~~l 110 (139)
T PRK04025 77 ALDVYTCGEKAD---------PEKAVDYILEQFK-AKYAHVSEI 110 (139)
T ss_pred EEEEEecCCCCC---------HHHHHHHHHHHhC-CCeEEEEEE
Confidence 589999998653 6788889999887 545555554
No 206
>PF09957 DUF2191: Uncharacterized protein conserved in bacteria (DUF2191); InterPro: IPR019239 This entry, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.71 E-value=1.1e+02 Score=23.58 Aligned_cols=13 Identities=46% Similarity=0.764 Sum_probs=12.0
Q ss_pred CcchHHHHHHHhh
Q psy13464 100 DIDDKIINKANSL 112 (515)
Q Consensus 100 DiDDKIi~~A~~l 112 (515)
||||.+++.|.++
T Consensus 6 ~iDd~Ll~eA~~l 18 (47)
T PF09957_consen 6 DIDDELLAEAMRL 18 (47)
T ss_pred eeCHHHHHHHHHH
Confidence 7899999999988
No 207
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=24.21 E-value=50 Score=34.21 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=32.7
Q ss_pred CccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcch
Q psy13464 60 PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDD 103 (515)
Q Consensus 60 ptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDD 103 (515)
|++.+++||||+|+.+...+++|- +.-.++.-|.|.|.
T Consensus 7 PSPtG~lHiG~~rtAL~n~l~Ar~------~gG~~iLRiEDtD~ 44 (272)
T TIGR03838 7 PSPSGPLHFGSLVAALGSYLDARA------HGGRWLVRIEDLDP 44 (272)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHH------hCCEEEEEeCcCCC
Confidence 888899999999999999999884 23578888999985
No 208
>KOG2145|consensus
Probab=24.21 E-value=1e+02 Score=32.96 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=36.9
Q ss_pred CCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHH
Q psy13464 50 KNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIIN 107 (515)
Q Consensus 50 ~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~ 107 (515)
++..-.|+-.-.--++.||||.-+|+. ..||++. ++|-.|-.+|| |+|-+=
T Consensus 83 ~kpFyLYTGRGpSS~smHlGHliPFif----tKwlQe~--F~vpLVIqlTD-DEKflw 133 (397)
T KOG2145|consen 83 GKPFYLYTGRGPSSESMHLGHLIPFIF----TKWLQDV--FDVPLVIQLTD-DEKFLW 133 (397)
T ss_pred CCceEEEeCCCCCccccccccchhHHH----HHHHHHH--hCCceEEEecc-cHHHHH
Confidence 344566775433468999999999875 6788865 67999999999 445443
No 209
>KOG1610|consensus
Probab=23.98 E-value=1.8e+02 Score=31.24 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCcEEEE------EccCCcchHHHHHHHhhhhhhhhhhh-cccch
Q psy13464 76 KLDIIRRILEHYFHIHSIVI------SSVTDIDDKIINKANSLKEDYKTVAK-RYFLP 126 (515)
Q Consensus 76 ~~Dvl~R~L~~~~G~~V~~V------~NiTDiDDKIi~~A~~l~~~y~~~~~-~~~~~ 126 (515)
..|.|||=|+ .+|.+|.-+ .|+++ -+++.+++++..++--.+.+ .|.++
T Consensus 188 f~D~lR~EL~-~fGV~VsiiePG~f~T~l~~-~~~~~~~~~~~w~~l~~e~k~~YGed 243 (322)
T KOG1610|consen 188 FSDSLRRELR-PFGVKVSIIEPGFFKTNLAN-PEKLEKRMKEIWERLPQETKDEYGED 243 (322)
T ss_pred HHHHHHHHHH-hcCcEEEEeccCccccccCC-hHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5899999999 789999755 68888 78999999887665544444 44444
No 210
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=23.96 E-value=95 Score=28.69 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=24.4
Q ss_pred ceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEE
Q psy13464 52 HLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVI 95 (515)
Q Consensus 52 ~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V 95 (515)
.|++|+||+++. +-..++.|++.|+ ..-..+..+
T Consensus 77 avDiftCg~~~~---------p~~a~~~L~~~f~-~~~~~~~~~ 110 (127)
T PRK03124 77 AVDVFTCGDRVD---------PWDACNYIAEGLG-AKTREAIEL 110 (127)
T ss_pred EEEEEecCCCCC---------HHHHHHHHHHHhC-CCeEEEEEE
Confidence 589999999763 4667888888887 444444444
No 211
>KOG2804|consensus
Probab=23.77 E-value=36 Score=36.15 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=30.8
Q ss_pred CCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCC
Q psy13464 49 NKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTD 100 (515)
Q Consensus 49 ~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTD 100 (515)
.++.|++|.=| +||--|.||||....+= .+|- +|..+.|+.+
T Consensus 60 ~~RPVRVYADG--IyDLFH~GHarqL~QaK-------~~FP-NvyLiVGvc~ 101 (348)
T KOG2804|consen 60 TDRPVRVYADG--IYDLFHYGHARQLEQAK-------KLFP-NVYLIVGVCS 101 (348)
T ss_pred CCCceEEEccc--hHHHhhhhHHHHHHHHH-------HhCC-CeEEEEeecC
Confidence 34779999966 89999999999966542 1343 4777777754
No 212
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=23.31 E-value=1e+02 Score=28.95 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=26.5
Q ss_pred ceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEE
Q psy13464 52 HLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVIS 96 (515)
Q Consensus 52 ~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~ 96 (515)
.|++|+||+++ .+...+|.|++.|+ .....+..+.
T Consensus 90 avDiftCg~~~---------~p~~a~~~L~~~l~-~~~~~~~~~~ 124 (139)
T PRK02770 90 AVDVFTCGDHT---------MPEKACQYLIEELM-AKRHSLRSIE 124 (139)
T ss_pred EEEEEecCCCC---------CHHHHHHHHHHHhC-CCeEEEEEEe
Confidence 58999999753 56788999999998 5555655554
No 213
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=23.18 E-value=94 Score=26.71 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHCCCeeeecCC
Q psy13464 328 IPHIQSFIQTLLDTKQAYIGSDH 350 (515)
Q Consensus 328 I~~iie~I~kLidnG~AYe~kdG 350 (515)
.+++.+.++.|.+.|++|.+-|.
T Consensus 79 ~~~v~~al~~L~~eG~IYsTiDd 101 (102)
T PF08784_consen 79 ENEVRKALDFLSNEGHIYSTIDD 101 (102)
T ss_dssp HHHHHHHHHHHHHTTSEEESSST
T ss_pred HHHHHHHHHHHHhCCeEecccCC
Confidence 45889999999999999986553
No 214
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=22.75 E-value=85 Score=33.82 Aligned_cols=38 Identities=32% Similarity=0.359 Sum_probs=25.4
Q ss_pred eeEEEcCCccCC-CCCCcchhhHHHHHHHHHHHHHhCCCcEEEEE
Q psy13464 53 LKWYACGPTVYD-SPHIGHAVCNVKLDIIRRILEHYFHIHSIVIS 96 (515)
Q Consensus 53 v~~y~cgptvyd-~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~ 96 (515)
+..| ||=.+=+ ++|||| +|..-.++++.+ .|++|.++.
T Consensus 31 ~~vy-~G~dPTg~~lHlGh---~v~l~~l~~lq~--~G~~~~ili 69 (377)
T TIGR00234 31 IKLY-VGFDPTAPSLHLGH---LVPLLKLRDFQQ--AGHEVIVLL 69 (377)
T ss_pred CEEE-EeeCCCCCCccHHH---HHHHHHHHHHHH--CCCcEEEEE
Confidence 4444 4544444 899999 556666777765 688887775
No 215
>KOG1147|consensus
Probab=21.92 E-value=1.2e+02 Score=34.96 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=14.1
Q ss_pred CccCCCCCCcchhhHH
Q psy13464 60 PTVYDSPHIGHAVCNV 75 (515)
Q Consensus 60 ptvyd~~HiGhaR~~v 75 (515)
|-+.++.|||||+..+
T Consensus 207 PEpSGyLHIGHAKAAL 222 (712)
T KOG1147|consen 207 PEPSGYLHIGHAKAAL 222 (712)
T ss_pred CCCCceeehhhHHHHH
Confidence 7888999999999765
No 216
>PLN02486 aminoacyl-tRNA ligase
Probab=21.01 E-value=48 Score=35.95 Aligned_cols=49 Identities=10% Similarity=0.033 Sum_probs=26.9
Q ss_pred eecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCC--Ccccccccc-eec
Q psy13464 428 TGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTD--GTRRLRAAR-FIT 480 (515)
Q Consensus 428 ~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G--~KMSks~Gn-fit 480 (515)
-.|+|+. ||++--+-.+.-. |....+ .+|..+| .+.| +|||||.+| .|-
T Consensus 224 PvG~DQd-~~~~ltRdia~r~-~~~kp~--~~~~~~lp~L~g~~~KMSkS~~nsaI~ 276 (383)
T PLN02486 224 PCAIDQD-PYFRMTRDVAPRL-GYYKPA--LIESRFFPALQGESGKMSASDPNSAIY 276 (383)
T ss_pred ecccchH-HHHHHHHHHHHHh-CCCCcc--eeccccccCCCCCCCcCcCcCCCCeee
Confidence 3477763 5665444444443 322222 3444433 5555 699999987 573
No 217
>KOG0074|consensus
Probab=20.36 E-value=34 Score=33.07 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=16.4
Q ss_pred Cccc-ccchhhhhhcCCCceEee
Q psy13464 407 GWHI-ECSAMASHFFGGQVDLHT 428 (515)
Q Consensus 407 GWHi-ECSAM~~~~lG~~~DIH~ 428 (515)
.||| |||||+..-.....|+-+
T Consensus 153 swhIq~csals~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 153 SWHIQECSALSLEGSTDGSDWVQ 175 (185)
T ss_pred eEEeeeCccccccCccCcchhhh
Confidence 7999 599998887766666543
No 218
>KOG3786|consensus
Probab=20.21 E-value=28 Score=37.78 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=24.8
Q ss_pred HHHHHHHhhhhchhhhhhcccccccCCCcccc-hhHhhhhhhh
Q psy13464 234 DEFRDELLALGVQIKDQKCEATWQFKDGKVFS-DRVFISLPLY 275 (515)
Q Consensus 234 ~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~-~~i~~~l~~~ 275 (515)
.+--+++=+|++ .|.+||||+|...| .+||-++..+
T Consensus 304 PedWDRVVaVF~------~G~~WQFk~wpw~dp~eIF~ki~gF 340 (395)
T KOG3786|consen 304 PEDWDRVVAVFV------TGPKWQFKGWPWRDPVEIFNKIKGF 340 (395)
T ss_pred hhhhceEEEEEe------ecCccccCCCCCCCHHHHHhhccee
Confidence 444455555554 69999999999964 5788766554
Done!