Query psy13464
Match_columns 515
No_of_seqs 208 out of 1432
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 20:05:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqo_A Cysteinyl-tRNA syntheta 100.0 2.4E-95 8E-100 772.5 20.4 284 30-495 3-293 (462)
2 3sp1_A Cysteinyl-tRNA syntheta 100.0 4.7E-92 1.6E-96 752.9 17.5 282 30-495 22-324 (501)
3 1li5_A Cysrs, cysteinyl-tRNA s 100.0 3.4E-83 1.2E-87 678.3 20.1 281 32-495 2-290 (461)
4 3c8z_A Cysteinyl-tRNA syntheta 100.0 9.2E-80 3.1E-84 642.9 21.2 294 19-495 3-316 (414)
5 2csx_A Methionyl-tRNA syntheta 100.0 1.1E-45 3.6E-50 391.4 8.4 256 53-495 5-319 (497)
6 2d5b_A Methionyl-tRNA syntheta 100.0 4.3E-45 1.5E-49 386.2 12.4 252 54-495 4-321 (500)
7 2x1l_A Methionyl-tRNA syntheta 100.0 1.1E-42 3.9E-47 370.4 13.7 184 302-495 83-334 (524)
8 1irx_A Lysyl-tRNA synthetase; 100.0 1.5E-42 5.1E-47 371.6 2.4 171 302-495 107-303 (523)
9 1iq0_A Arginyl-tRNA synthetase 100.0 8.7E-40 3E-44 355.5 8.4 174 300-488 217-412 (592)
10 1rqg_A Methionyl-tRNA syntheta 100.0 4.4E-37 1.5E-41 341.1 13.8 259 54-495 5-368 (722)
11 4dlp_A Aminoacyl-tRNA syntheta 100.0 6.1E-37 2.1E-41 328.1 13.5 264 41-495 13-345 (536)
12 3h99_A Methionyl-tRNA syntheta 100.0 7.2E-36 2.5E-40 321.4 14.2 265 45-495 10-369 (560)
13 3u1f_A Methionyl-tRNA syntheta 100.0 8E-36 2.7E-40 318.3 12.0 256 54-495 10-347 (542)
14 2zue_A Arginyl-tRNA synthetase 100.0 1.7E-35 6E-40 324.1 8.5 297 49-488 117-444 (629)
15 3kfl_A Methionyl-tRNA syntheta 100.0 1.7E-34 6E-39 311.8 6.5 265 41-495 13-363 (564)
16 1f7u_A Arginyl-tRNA synthetase 100.0 3.3E-32 1.1E-36 297.4 9.5 285 49-493 141-429 (607)
17 1qtq_A GLNRS, protein (glutami 100.0 1.5E-31 5.1E-36 288.7 5.7 175 302-495 77-307 (553)
18 3aii_A Glutamyl-tRNA synthetas 100.0 6.5E-32 2.2E-36 291.5 1.3 174 302-495 147-369 (553)
19 2hz7_A Glutaminyl-tRNA synthet 100.0 2.2E-31 7.5E-36 298.2 4.6 174 302-495 117-347 (851)
20 1nzj_A Hypothetical protein YA 99.9 4.4E-27 1.5E-31 237.4 7.6 165 302-489 56-246 (298)
21 1wkb_A Leucyl-tRNA synthetase; 99.9 5E-26 1.7E-30 254.7 10.8 72 423-495 603-674 (810)
22 1gax_A Valrs, valyl-tRNA synth 99.9 8.2E-25 2.8E-29 247.2 17.8 72 422-495 480-552 (862)
23 2cfo_A Glutamyl-tRNA synthetas 99.9 4.4E-26 1.5E-30 243.9 5.5 165 302-493 52-269 (492)
24 1ile_A Ilers, isoleucyl-tRNA s 99.9 4.8E-24 1.6E-28 239.4 14.7 72 423-495 544-615 (821)
25 1wz2_A Leucyl-tRNA synthetase; 99.9 1.2E-23 4.1E-28 240.1 15.8 73 422-495 602-674 (967)
26 1ffy_A Isoleucyl-tRNA syntheta 99.9 3.6E-22 1.2E-26 227.0 16.0 72 422-495 547-619 (917)
27 2v0c_A Aminoacyl-tRNA syntheta 99.9 3E-22 1E-26 226.7 10.9 61 51-112 31-93 (878)
28 4arc_A Leucine--tRNA ligase; l 99.9 1.3E-21 4.3E-26 221.6 12.5 61 51-112 51-113 (880)
29 3fnr_A Arginyl-tRNA synthetase 99.8 2.2E-20 7.6E-25 198.6 17.0 156 302-495 147-309 (464)
30 2o5r_A Glutamyl-tRNA synthetas 99.6 7E-15 2.4E-19 157.0 12.4 164 302-493 64-284 (481)
31 3al0_C Glutamyl-tRNA(Gln) amid 99.5 1.6E-13 5.5E-18 149.9 11.1 164 302-493 180-381 (592)
32 1j09_A Glutamyl-tRNA synthetas 99.4 2.9E-13 9.9E-18 144.3 10.2 161 302-493 52-265 (468)
33 3afh_A Glutamyl-tRNA synthetas 99.4 6.8E-13 2.3E-17 142.1 11.3 164 302-493 76-277 (488)
34 4g6z_A Glutamate-tRNA ligase; 99.2 6.5E-11 2.2E-15 126.9 12.2 176 302-494 76-287 (490)
35 2ja2_A Glutamyl-tRNA synthetas 98.4 1.6E-06 5.6E-11 93.1 13.5 164 302-493 57-279 (498)
36 4gri_A Glutamate--tRNA ligase; 98.1 2.4E-05 8.2E-10 84.2 14.9 44 302-346 75-127 (512)
37 3sp1_A Cysteinyl-tRNA syntheta 98.0 8.8E-07 3E-11 95.3 0.8 44 139-183 54-107 (501)
38 3tqo_A Cysteinyl-tRNA syntheta 97.9 2.4E-06 8.2E-11 91.1 2.1 44 139-183 37-80 (462)
39 1li5_A Cysrs, cysteinyl-tRNA s 97.9 3.4E-06 1.2E-10 89.5 2.0 44 139-183 34-77 (461)
40 3c8z_A Cysteinyl-tRNA syntheta 97.3 4.4E-05 1.5E-09 79.7 1.3 43 140-183 52-94 (414)
41 4dlp_A Aminoacyl-tRNA syntheta 96.3 0.001 3.4E-08 71.4 1.4 43 140-183 39-81 (536)
42 2x1l_A Methionyl-tRNA syntheta 96.1 0.0016 5.4E-08 69.3 1.7 58 139-197 25-82 (524)
43 2cyb_A Tyrosyl-tRNA synthetase 96.0 0.0034 1.2E-07 63.6 3.5 65 415-483 162-227 (323)
44 2d5b_A Methionyl-tRNA syntheta 96.0 0.0018 6E-08 68.4 1.4 43 139-182 16-58 (500)
45 2csx_A Methionyl-tRNA syntheta 95.7 0.0024 8.3E-08 67.5 1.3 43 139-182 18-60 (497)
46 3kfl_A Methionyl-tRNA syntheta 95.5 0.004 1.4E-07 67.4 1.7 43 139-182 39-81 (564)
47 3h99_A Methionyl-tRNA syntheta 95.3 0.0038 1.3E-07 67.2 1.0 43 139-182 31-73 (560)
48 3u1f_A Methionyl-tRNA syntheta 95.1 0.0056 1.9E-07 65.3 1.5 44 138-182 21-64 (542)
49 1irx_A Lysyl-tRNA synthetase; 94.7 0.0037 1.3E-07 67.0 -1.5 51 140-191 33-90 (523)
50 1rqg_A Methionyl-tRNA syntheta 94.3 0.012 4.1E-07 65.7 1.6 43 139-182 15-58 (722)
51 2v0c_A Aminoacyl-tRNA syntheta 93.7 0.023 8E-07 64.8 2.4 53 139-192 46-98 (878)
52 2yxn_A Tyrosyl-tRNA synthetase 93.4 0.022 7.4E-07 57.9 1.4 57 423-483 191-248 (322)
53 1n3l_A Tyrosyl-tRNA synthetase 92.4 0.06 2.1E-06 55.7 3.0 64 416-483 171-236 (372)
54 2pid_A Tyrosyl-tRNA synthetase 92.0 0.046 1.6E-06 56.3 1.5 57 423-483 210-267 (356)
55 4arc_A Leucine--tRNA ligase; l 91.8 0.051 1.8E-06 62.2 1.8 56 140-196 67-122 (880)
56 2dlc_X Tyrosyl-tRNA synthetase 91.8 0.073 2.5E-06 55.4 2.8 66 415-484 174-242 (394)
57 1h3f_A Tyrosyl-tRNA synthetase 91.5 0.077 2.6E-06 56.1 2.7 57 423-483 187-245 (432)
58 1jil_A Tyrrs, tyrosyl-tRNA syn 91.2 0.078 2.7E-06 55.8 2.4 57 423-483 186-244 (420)
59 1iq0_A Arginyl-tRNA synthetase 91.1 0.057 1.9E-06 58.9 1.2 38 139-177 116-153 (592)
60 2ts1_A Tyrosyl-tRNA synthetase 90.9 0.077 2.6E-06 56.0 1.9 57 423-483 185-243 (419)
61 1f7u_A Arginyl-tRNA synthetase 90.7 0.066 2.3E-06 58.8 1.2 36 139-175 156-191 (607)
62 2jan_A Tyrosyl-tRNA synthetase 90.7 0.085 2.9E-06 55.9 1.9 57 423-483 187-245 (432)
63 2g36_A Tryptophanyl-tRNA synth 90.5 0.072 2.4E-06 54.5 1.2 69 414-483 144-218 (340)
64 2cya_A Tyrosyl-tRNA synthetase 89.0 0.2 6.8E-06 51.7 3.2 65 414-482 168-251 (364)
65 3tzl_A Tryptophanyl-tRNA synth 88.0 0.15 5E-06 51.9 1.3 68 414-483 130-205 (322)
66 2zp1_A Tyrosyl-tRNA synthetase 87.9 0.17 5.7E-06 51.1 1.7 61 416-484 156-218 (314)
67 2zue_A Arginyl-tRNA synthetase 87.4 0.14 4.8E-06 56.4 0.8 38 139-177 132-169 (629)
68 3vgj_A Tyrosyl-tRNA synthetase 87.1 0.33 1.1E-05 50.3 3.4 65 415-482 192-260 (373)
69 1y42_X Tyrosyl-tRNA synthetase 86.5 0.29 9.9E-06 51.1 2.6 60 423-483 232-306 (392)
70 2el7_A Tryptophanyl-tRNA synth 86.2 0.3 1E-05 49.8 2.5 67 415-483 133-208 (337)
71 2cyc_A Tyrosyl-tRNA synthetase 85.7 0.29 9.9E-06 50.7 2.1 68 414-483 171-265 (375)
72 2j5b_A Tyrosyl-tRNA synthetase 84.2 0.49 1.7E-05 48.4 2.9 58 423-484 186-247 (348)
73 3jxe_A Tryptophanyl-tRNA synth 83.2 0.88 3E-05 47.6 4.4 63 415-481 198-265 (392)
74 1yi8_B Tryptophanyl-tRNA synth 82.8 0.42 1.4E-05 49.1 1.7 68 415-483 154-228 (351)
75 3i05_A Tryptophanyl-tRNA synth 82.6 0.58 2E-05 49.0 2.7 54 424-481 225-281 (395)
76 2yy5_A Tryptophanyl-tRNA synth 82.5 0.52 1.8E-05 48.3 2.3 68 414-483 138-218 (348)
77 1i6k_A TRPRS, tryptophanyl-tRN 81.9 0.62 2.1E-05 47.3 2.6 71 413-484 127-209 (328)
78 2ip1_A Tryptophanyl-tRNA synth 78.1 1.1 3.8E-05 47.3 3.1 57 423-483 249-309 (432)
79 3tze_A Tryptophanyl-tRNA synth 77.7 1.5 5.1E-05 46.0 3.9 60 420-483 240-303 (406)
80 1ile_A Ilers, isoleucyl-tRNA s 77.3 1 3.4E-05 50.9 2.6 129 140-358 52-184 (821)
81 3hv0_A Tryptophanyl-tRNA synth 77.0 1.6 5.4E-05 45.7 3.8 52 426-481 223-278 (393)
82 1wkb_A Leucyl-tRNA synthetase; 76.5 0.93 3.2E-05 50.9 2.1 59 298-358 125-189 (810)
83 3hzr_A Tryptophanyl-tRNA synth 74.5 2.4 8.3E-05 44.1 4.4 54 425-482 226-282 (386)
84 3p0j_A Tyrosyl-tRNA synthetase 74.3 1.6 5.4E-05 48.8 3.1 65 414-481 174-242 (690)
85 1ffy_A Isoleucyl-tRNA syntheta 73.1 1.1 3.9E-05 51.3 1.7 127 137-358 60-189 (917)
86 3prh_A Tryptophanyl-tRNA synth 69.8 1.2 4E-05 46.6 0.7 69 413-483 161-242 (388)
87 3hzr_A Tryptophanyl-tRNA synth 68.3 7.3 0.00025 40.6 6.3 61 50-118 80-150 (386)
88 1wz2_A Leucyl-tRNA synthetase; 67.1 1.7 5.8E-05 50.1 1.4 59 298-358 125-189 (967)
89 3foc_A Tryptophanyl-tRNA synth 66.4 3 0.0001 44.4 3.0 51 426-480 290-344 (451)
90 1r6u_A Tryptophanyl-tRNA synth 65.1 3.1 0.00011 44.0 2.8 53 428-484 261-317 (437)
91 3n9i_A Tryptophanyl-tRNA synth 61.4 3.4 0.00012 42.4 2.2 68 413-482 142-222 (346)
92 1r6t_A Tryptophanyl-tRNA synth 61.3 3.2 0.00011 44.3 2.1 53 428-484 308-364 (477)
93 1gax_A Valrs, valyl-tRNA synth 60.3 2.3 8E-05 48.5 0.9 58 298-358 117-179 (862)
94 3sz3_A Tryptophanyl-tRNA synth 58.3 2.8 9.5E-05 42.9 1.0 69 413-482 133-216 (341)
95 3aii_A Glutamyl-tRNA synthetas 58.1 2.4 8.3E-05 46.2 0.5 35 139-179 107-141 (553)
96 1qtq_A GLNRS, protein (glutami 52.9 3.3 0.00011 45.2 0.5 36 139-180 37-72 (553)
97 2hz7_A Glutaminyl-tRNA synthet 45.7 4.6 0.00016 46.2 0.2 35 139-179 77-111 (851)
98 1nzj_A Hypothetical protein YA 45.6 5 0.00017 40.2 0.5 34 140-179 17-50 (298)
99 3a04_A Tryptophanyl-tRNA synth 45.2 8.1 0.00028 39.9 1.9 53 426-481 211-268 (372)
100 3tze_A Tryptophanyl-tRNA synth 41.9 29 0.00098 36.4 5.5 62 50-118 99-170 (406)
101 3fnr_A Arginyl-tRNA synthetase 39.6 10 0.00035 40.3 1.7 35 140-175 44-78 (464)
102 3i05_A Tryptophanyl-tRNA synth 35.4 39 0.0013 35.2 5.2 62 50-118 76-147 (395)
103 3pkr_A FLIG, flagellar motor s 33.7 56 0.0019 32.6 5.8 42 302-346 230-271 (279)
104 3jxe_A Tryptophanyl-tRNA synth 33.6 30 0.001 36.0 4.0 42 50-97 71-113 (392)
105 3foc_A Tryptophanyl-tRNA synth 33.3 37 0.0013 36.1 4.7 62 50-118 89-161 (451)
106 2zp1_A Tyrosyl-tRNA synthetase 32.5 26 0.0009 35.0 3.3 63 50-119 26-96 (314)
107 2j5b_A Tyrosyl-tRNA synthetase 30.7 43 0.0015 34.1 4.5 41 51-97 39-80 (348)
108 1h3f_A Tyrosyl-tRNA synthetase 26.0 65 0.0022 33.9 5.0 42 50-97 35-77 (432)
109 2cyb_A Tyrosyl-tRNA synthetase 25.9 1E+02 0.0034 30.7 6.2 62 51-119 31-100 (323)
110 4hw4_A Induced myeloid leukemi 25.2 93 0.0032 28.2 5.3 84 234-343 2-88 (157)
111 3hv0_A Tryptophanyl-tRNA synth 24.9 62 0.0021 33.6 4.6 40 50-94 72-112 (393)
112 4g6z_A Glutamate-tRNA ligase; 24.5 18 0.00062 38.8 0.5 34 140-179 37-70 (490)
113 3a04_A Tryptophanyl-tRNA synth 24.0 71 0.0024 32.8 4.8 40 50-96 68-108 (372)
114 4b2u_A S67; toxin, ICK; NMR {S 23.8 20 0.00068 24.9 0.4 12 496-507 5-16 (36)
115 2cya_A Tyrosyl-tRNA synthetase 22.6 89 0.003 31.9 5.2 40 51-97 34-74 (364)
116 2yxn_A Tyrosyl-tRNA synthetase 22.2 92 0.0032 31.2 5.1 40 52-97 33-73 (322)
117 1i6k_A TRPRS, tryptophanyl-tRN 20.8 69 0.0024 32.2 3.9 55 58-119 8-68 (328)
118 2dlc_X Tyrosyl-tRNA synthetase 20.6 1.2E+02 0.0041 31.3 5.7 40 51-97 38-78 (394)
119 1wj5_A Hypothetical protein (r 20.2 64 0.0022 28.6 3.0 36 324-360 72-111 (120)
No 1
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=2.4e-95 Score=772.53 Aligned_cols=284 Identities=40% Similarity=0.673 Sum_probs=265.0
Q ss_pred CceEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHH
Q psy13464 30 TGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKA 109 (515)
Q Consensus 30 ~~l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A 109 (515)
+.|+||||+||+|++|+|.++++|+||+||||||+.+||||+|+||.+|+++|||+ +.||+|.||+|+||+||||+++|
T Consensus 3 m~l~~yntlt~~ke~f~p~~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr-~~Gy~V~~v~n~dD~ddKIi~~A 81 (462)
T 3tqo_A 3 MSVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLR-MRGYEVTFVRNITDIDDKIIKRA 81 (462)
T ss_dssp CCCEEEETTTTEEEECCCSSTTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHH-HTTCEEEEEECBBCCCHHHHHHH
T ss_pred ceEEEEEcCCCceeccccCCCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHH-HcCCceEEecCcCCCCcHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HhhhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhccccc
Q psy13464 110 NSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKE 189 (515)
Q Consensus 110 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~ 189 (515)
++. +.
T Consensus 82 ~~~---------------------------------------------------------------------------g~ 86 (462)
T 3tqo_A 82 GEN---------------------------------------------------------------------------KE 86 (462)
T ss_dssp HHT---------------------------------------------------------------------------TS
T ss_pred HHc---------------------------------------------------------------------------CC
Confidence 886 44
Q ss_pred chHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHh
Q psy13464 190 DYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVF 269 (515)
Q Consensus 190 ~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~ 269 (515)
++++++
T Consensus 87 ~~~e~a-------------------------------------------------------------------------- 92 (462)
T 3tqo_A 87 SPAALA-------------------------------------------------------------------------- 92 (462)
T ss_dssp CHHHHH--------------------------------------------------------------------------
T ss_pred CHHHHH--------------------------------------------------------------------------
Confidence 444322
Q ss_pred hhhhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecC
Q psy13464 270 ISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSD 349 (515)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kd 349 (515)
.+ |+++|.++|++|||++|+.+||+|+|++.|+++|++|+++|+||+.++
T Consensus 93 ----~~--------------------------~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~ 142 (462)
T 3tqo_A 93 ----ER--------------------------FIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQN 142 (462)
T ss_dssp ----HH--------------------------HHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECTT
T ss_pred ----HH--------------------------HHHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEecC
Confidence 33 999999999999999999999999999999999999999999998438
Q ss_pred CcEEEeccCCCCcceecccCCC-------CCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCC
Q psy13464 350 HSVYFDVDSFPHYFKLWGRNEN-------ITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGG 422 (515)
Q Consensus 350 GsVYFDv~~~~~YG~Ls~~~~~-------~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~ 422 (515)
|+||||++++++||+||+++.. +..+..||||.||+|||.++||||.|+||||+||||||||||||+.++||.
T Consensus 143 g~Vyfdv~~~~~yg~Ls~~~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~ 222 (462)
T 3tqo_A 143 GDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQ 222 (462)
T ss_dssp SCEEECTTTCTTTTTTTTCSCC------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCS
T ss_pred CcEEeccccccccccccCCChHHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCC
Confidence 9999999999999999998872 223457999999999999999999999999999999999999999999999
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
+||||+||.||+|||||||+||++|++|+ +|++||||+|+|+++|+|||||+|||||+.++++. ||+|+.|
T Consensus 223 ~~dih~gG~Dl~FpHheneiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~-~g~dalR 293 (462)
T 3tqo_A 223 PFDIHGGGLDLKFPHHENEIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALKE-SDVEVLR 293 (462)
T ss_dssp SEEEEEEEGGGTTTHHHHHHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHH-SCHHHHH
T ss_pred CeEEEccccccccHHHHhHHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHhh-cChHHhh
Confidence 99999999999999999999999999985 89999999999999999999999999999999999 9999765
No 2
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=4.7e-92 Score=752.88 Aligned_cols=282 Identities=28% Similarity=0.482 Sum_probs=235.2
Q ss_pred CceEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCc--------
Q psy13464 30 TGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDI-------- 101 (515)
Q Consensus 30 ~~l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDi-------- 101 (515)
++|+||||+||+|++|+|.+ +|+||+||||||+.+||||||+||.+|+++|||+ +.||+|.||+|||||
T Consensus 22 m~l~lyntltr~ke~f~p~~--~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr-~~Gy~V~~v~niTDvGhltG~~D 98 (501)
T 3sp1_A 22 MILKLYNTRTKDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLR-FLGYKVNYAMNITDIGHLTGDLD 98 (501)
T ss_dssp CCEEEEETTTTEEEEECCCS--CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHH-HHTCCEEEEEEEBCSCCC-----
T ss_pred CeEEEEECCCCccccccccC--cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHH-HcCCceeEEeeecccccccCCCC
Confidence 67999999999999999988 8999999999999999999999999999999999 899999999999999
Q ss_pred --chHHHHHHHhhhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhH
Q psy13464 102 --DDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDK 179 (515)
Q Consensus 102 --DDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddK 179 (515)
||||+++|++.
T Consensus 99 ehddKI~~~A~~~------------------------------------------------------------------- 111 (501)
T 3sp1_A 99 DGEDKVAKTAREK------------------------------------------------------------------- 111 (501)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcHHHHHHHHc-------------------------------------------------------------------
Confidence 89999888875
Q ss_pred HHhhhcccccchHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccC
Q psy13464 180 IINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFK 259 (515)
Q Consensus 180 ii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~ 259 (515)
+.++++++
T Consensus 112 --------g~~~~e~a---------------------------------------------------------------- 119 (501)
T 3sp1_A 112 --------GLTVYEIS---------------------------------------------------------------- 119 (501)
T ss_dssp ---------CCHHHHH----------------------------------------------------------------
T ss_pred --------CCCHHHHH----------------------------------------------------------------
Confidence 44554332
Q ss_pred CCcccchhHhhhhhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHH
Q psy13464 260 DGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLL 339 (515)
Q Consensus 260 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLi 339 (515)
.+ |++.|.++|++|||++|+.+||+|+|++.|+++|++|+
T Consensus 120 --------------~~--------------------------~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~ 159 (501)
T 3sp1_A 120 --------------EF--------------------------FTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILE 159 (501)
T ss_dssp --------------HH--------------------------HHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHH
T ss_pred --------------HH--------------------------HHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHHH
Confidence 33 99999999999999999999999999999999999999
Q ss_pred HCCCeeeecCCcEEEeccCCCCcceecccCC-C-C------CccCcccCccCcccccc---ccCCCCcccCCCCCCCCCc
Q psy13464 340 DTKQAYIGSDHSVYFDVDSFPHYFKLWGRNE-N-I------TQHAVKRSPFDFALWKS---AKPGEPWYESAWGKGRPGW 408 (515)
Q Consensus 340 dnG~AYe~kdGsVYFDv~~~~~YG~Ls~~~~-~-~------t~~~~Kr~~~DFaLWK~---~~~gep~W~SpwG~GRPGW 408 (515)
++|+||+ .+|+||||+++|++||+||++++ + + +.+..|+||.||+|||. .++++|+|+||||.|||||
T Consensus 160 ~kG~aY~-~~g~Vyf~v~~f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGW 238 (501)
T 3sp1_A 160 EKKITYF-SNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSW 238 (501)
T ss_dssp HTTCEEE-ETTEEEECGGGCTTTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECH
T ss_pred HCCCEEE-eCCcEEecCCccCCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCc
Confidence 9999998 79999999999999999999876 2 1 23457999999999998 3478999999999999999
Q ss_pred ccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccc
Q psy13464 409 HIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIG 488 (515)
Q Consensus 409 HiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~ 488 (515)
|||||||+.+|||.++|||+||+||+|||||||+||++|++| ++|+|||||+|||+++|+|||||+|||||+.++++.|
T Consensus 239 hiEcsam~~~~lg~~~DIH~gG~DLifpHheneiAqs~a~~g-~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~g 317 (501)
T 3sp1_A 239 HLECAAMNLEYFKDALDIHLGGVDHIGVHHINEIAIAECFLN-KKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQN 317 (501)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHHHHHT-SCCCSEEEEECCEECC----------CCCHHHHHHTT
T ss_pred hHHHHHHHHHHcCCCceEEeeccccccchHHHHHHHHHHccC-CCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcC
Confidence 999999999999999999999999999999999999999998 5899999999999999999999999999999999999
Q ss_pred cCccccC
Q psy13464 489 YTRDTCA 495 (515)
Q Consensus 489 y~~D~~~ 495 (515)
||+|+.|
T Consensus 318 yg~d~lR 324 (501)
T 3sp1_A 318 FSPLDFR 324 (501)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 9999765
No 3
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=3.4e-83 Score=678.28 Aligned_cols=281 Identities=37% Similarity=0.647 Sum_probs=259.8
Q ss_pred eEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHh
Q psy13464 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANS 111 (515)
Q Consensus 32 l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~ 111 (515)
|+||||+||+|++|+|.++++|+||+||||||+.+||||+|++|.+|+++|||+ +.||+|.||+|+||+||||+++|++
T Consensus 2 l~~ynt~t~~~~~f~p~~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr-~~G~~V~~v~~~tD~d~ki~~~A~~ 80 (461)
T 1li5_A 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLR-FLGYKLKYVRNITDIDDKIIKRANE 80 (461)
T ss_dssp CEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHH-HHTCEEEEEECBBCCSHHHHHHHHH
T ss_pred cEEEeCCCCCccccccCCCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHH-HcCCCEEEeecCCCCcHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999 8999999999999999999999988
Q ss_pred hhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccch
Q psy13464 112 LKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDY 191 (515)
Q Consensus 112 l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~ 191 (515)
. ++++
T Consensus 81 ~---------------------------------------------------------------------------g~~~ 85 (461)
T 1li5_A 81 N---------------------------------------------------------------------------GESF 85 (461)
T ss_dssp T---------------------------------------------------------------------------TCCH
T ss_pred c---------------------------------------------------------------------------CCCH
Confidence 5 5555
Q ss_pred HHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhh
Q psy13464 192 KTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFIS 271 (515)
Q Consensus 192 ~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~ 271 (515)
++++
T Consensus 86 ~~~~---------------------------------------------------------------------------- 89 (461)
T 1li5_A 86 VAMV---------------------------------------------------------------------------- 89 (461)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 5433
Q ss_pred hhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeec-CC
Q psy13464 272 LPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGS-DH 350 (515)
Q Consensus 272 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~k-dG 350 (515)
.+ |+++|.++|++|||.+||.|+|+|+|++.|+++|++|+++|+||+ . +|
T Consensus 90 --~~--------------------------~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~-~~~g 140 (461)
T 1li5_A 90 --DR--------------------------MIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYV-ADNG 140 (461)
T ss_dssp --HH--------------------------HHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEE-CTTS
T ss_pred --HH--------------------------HHHHHHHHHHHcCCCCCcccccccchHHHHHHHHHHHHHCCCEEE-ecCC
Confidence 33 999999999999999999999999999999999999999999998 7 89
Q ss_pred cEEEeccCCCCcceecccCC-C------CCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCC
Q psy13464 351 SVYFDVDSFPHYFKLWGRNE-N------ITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQ 423 (515)
Q Consensus 351 sVYFDv~~~~~YG~Ls~~~~-~------~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~ 423 (515)
+||||+++++.||+|++++. . +..+..|+||.||+|||.+++|+|.|++|||.||||||||||+|+.++||.+
T Consensus 141 ~v~f~~~~~~~yg~lsg~~~~~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~ 220 (461)
T 1li5_A 141 DVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNH 220 (461)
T ss_dssp CEEECGGGCTTTTTTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSS
T ss_pred CEEEecccccccccccCCCHHHhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCC
Confidence 99999999999999999864 1 1223469999999999999999999999999999999999999999999999
Q ss_pred ceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 424 VDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 424 ~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
+|||+||.||+||||+||+||++|++|. +++++|+|+|+|+++|+|||||+||+||+.++++. ||+|+.|
T Consensus 221 ~dih~gG~Dl~fpH~~~~~aq~~a~~g~-~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~-~g~dalR 290 (461)
T 1li5_A 221 FDIHGGGSDLMFPHHENEIAQSTCAHDG-QYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKY-YDAETVR 290 (461)
T ss_dssp EEEEECBGGGTTTHHHHHHHHHHHHSSS-CCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTT-SCHHHHH
T ss_pred ceEEeccCccCchHHHHHHHHHHHhcCC-CCCcEEEEeeEEEECCeEccccCCCccChhHHhhh-CCHHHHH
Confidence 9999999999999999999999999885 79999999999999999999999999999999999 9999655
No 4
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=9.2e-80 Score=642.89 Aligned_cols=294 Identities=27% Similarity=0.493 Sum_probs=257.5
Q ss_pred CCCCCCCCC-----CCCceEEeeCCCCCccccccCCCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEE
Q psy13464 19 SPKWSLPSG-----YDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSI 93 (515)
Q Consensus 19 ~~~~~~p~~-----~~~~l~~~nslt~~k~~f~~~~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~ 93 (515)
+|+|++|.. ..++|+||||+||+|++|+| +++++||+||||||+.+||||+|++|.+|+++|+|+ +.||+|.
T Consensus 3 ~~~w~~~~~~~~~~~~~~~~lynt~~~~~~~f~p--~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr-~~G~~V~ 79 (414)
T 3c8z_A 3 MQSWSAPAIPVVPGRGPALRLFDSADRQVRPVTP--GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWL-DAGHTVQ 79 (414)
T ss_dssp CCCCCCCCCCCCSSCCCCCEEEETTTTEEEECCC--CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHH-HTTCEEE
T ss_pred cccCCCCCCcCCCCCCCCcEEEeeccCCcccccC--CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHH-HcCCCEE
Confidence 588998874 35789999999999999999 788999999999999999999999999999999999 8999999
Q ss_pred EEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhccccccc
Q psy13464 94 VISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSV 173 (515)
Q Consensus 94 ~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~ni 173 (515)
|++|+||+||||+.+|++.
T Consensus 80 ~~~~~dd~g~ki~~~A~~~------------------------------------------------------------- 98 (414)
T 3c8z_A 80 YVQNVTDVDDPLFERAERD------------------------------------------------------------- 98 (414)
T ss_dssp EEEEECCSCHHHHHHHHHH-------------------------------------------------------------
T ss_pred eCCCCCCccHHHHHHHHHc-------------------------------------------------------------
Confidence 9999999999999999875
Q ss_pred CcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcc
Q psy13464 174 TDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCE 253 (515)
Q Consensus 174 TDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~ 253 (515)
+.+++++
T Consensus 99 --------------g~~~~~~----------------------------------------------------------- 105 (414)
T 3c8z_A 99 --------------GIDWRTL----------------------------------------------------------- 105 (414)
T ss_dssp --------------TCCHHHH-----------------------------------------------------------
T ss_pred --------------CCCHHHH-----------------------------------------------------------
Confidence 3334322
Q ss_pred cccccCCCcccchhHhhhhhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccHHHHHH
Q psy13464 254 ATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQS 333 (515)
Q Consensus 254 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI~~iie 333 (515)
+.+ |++.|.++|++|||.++|.++|+|+|++.+++
T Consensus 106 -------------------~~~--------------------------~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~ 140 (414)
T 3c8z_A 106 -------------------GDR--------------------------ETQLFREDMAALRVLPPHDYVAATDAIAEVVE 140 (414)
T ss_dssp -------------------HHH--------------------------HHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHH
T ss_pred -------------------HHH--------------------------HHHHHHHHHHHcCCCCCcceecccchHHHHHH
Confidence 233 89999999999999977999999999999999
Q ss_pred HHHHHHHCCCeeeecC----CcEEEeccCCCCcceecccCCC----------CC-ccCcccCccCccccccccCCCCccc
Q psy13464 334 FIQTLLDTKQAYIGSD----HSVYFDVDSFPHYFKLWGRNEN----------IT-QHAVKRSPFDFALWKSAKPGEPWYE 398 (515)
Q Consensus 334 ~I~kLidnG~AYe~kd----GsVYFDv~~~~~YG~Ls~~~~~----------~t-~~~~Kr~~~DFaLWK~~~~gep~W~ 398 (515)
++++|+++|+||+ ++ |+|||+++++++||+|++++.+ .+ .++.|++|.||+|||..+||+|.|+
T Consensus 141 ~~~~L~~kG~~Y~-~~~~~e~~~~f~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wd 219 (414)
T 3c8z_A 141 MVEKLLASGAAYI-VEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWP 219 (414)
T ss_dssp HHHHHHHHTSEEE-CSCSSCCCEEECTTSSTTTTTTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBC
T ss_pred HHHHHHHCCCEEe-ccCCcCCCEEEEchhhhhhHhhcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCC
Confidence 9999999999998 77 9999999999999999886531 11 2567999999999999999999999
Q ss_pred CCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccce
Q psy13464 399 SAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARF 478 (515)
Q Consensus 399 SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnf 478 (515)
+|||.||||||||||+|+.++||.++|||+||.||+||||+||+||++|++|..+++++|+|+|+|+++|+|||||+||+
T Consensus 220 a~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN~ 299 (414)
T 3c8z_A 220 SPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNL 299 (414)
T ss_dssp CTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-------------
T ss_pred CCCCCCCCCccchhHHHHHHhcCCCceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEecCCeEcccccCCc
Confidence 99999999999999999999999999999999999999999999999999886688899999999999999999999999
Q ss_pred eccccccccccCccccC
Q psy13464 479 ITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 479 it~~~li~~~y~~D~~~ 495 (515)
||+.+++++|||+|+.|
T Consensus 300 v~~~~ll~~g~g~D~lR 316 (414)
T 3c8z_A 300 VLVSQLRAQGVDPSAIR 316 (414)
T ss_dssp CBHHHHHHTTCCHHHHH
T ss_pred CCHHHHhhccCCcchhe
Confidence 99999999999999765
No 5
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=1.1e-45 Score=391.45 Aligned_cols=256 Identities=18% Similarity=0.239 Sum_probs=192.6
Q ss_pred eeEEEcCCccC--CCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHH
Q psy13464 53 LKWYACGPTVY--DSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFK 130 (515)
Q Consensus 53 v~~y~cgptvy--d~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~ 130 (515)
-++|+|||++| +.+||||+|++|.+|+++||++ +.|++|.+++|+|++|+||+++|++.
T Consensus 5 ~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r-~~G~~V~~~~g~D~~G~~i~~~a~~~------------------ 65 (497)
T 2csx_A 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYR-LRDYDVFFLTGTDEHGLKIQKKAEEL------------------ 65 (497)
T ss_dssp CEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHH-HTTCEEEEEEEEECCSHHHHTHHHHS------------------
T ss_pred CcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHH-hcCCceeeecccCCCcHHHHHHHHHc------------------
Confidence 47999999988 9999999999999999999999 99999999999999999999988764
Q ss_pred hhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHH
Q psy13464 131 ILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQK 210 (515)
Q Consensus 131 ~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~ 210 (515)
+.++++.
T Consensus 66 ---------------------------------------------------------g~~~~~~---------------- 72 (497)
T 2csx_A 66 ---------------------------------------------------------GISPKEL---------------- 72 (497)
T ss_dssp ---------------------------------------------------------SSCHHHH----------------
T ss_pred ---------------------------------------------------------CCCHHHH----------------
Confidence 3333311
Q ss_pred HHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCcccc
Q psy13464 211 VVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLR 290 (515)
Q Consensus 211 ~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 290 (515)
+.+
T Consensus 73 --------------------------------------------------------------~~~--------------- 75 (497)
T 2csx_A 73 --------------------------------------------------------------VDR--------------- 75 (497)
T ss_dssp --------------------------------------------------------------HHH---------------
T ss_pred --------------------------------------------------------------HHH---------------
Confidence 123
Q ss_pred chhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccc--cHHHHHHHHHHHHHCCCeeeec-CCcEEEeccCCCCccee--
Q psy13464 291 TVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSE--FIPHIQSFIQTLLDTKQAYIGS-DHSVYFDVDSFPHYFKL-- 365 (515)
Q Consensus 291 ~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTe--hI~~iie~I~kLidnG~AYe~k-dGsVYFDv~~~~~YG~L-- 365 (515)
|++.|.++|++|||. +|.++|+|+ |++.+++++++|+++|+||+.. .|.++++...+..++.+
T Consensus 76 -----------~~~~~~~~~~~lgi~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~ 143 (497)
T 2csx_A 76 -----------NAERFKKLWEFLKIE-YTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAE 143 (497)
T ss_dssp -----------HHHHHHHHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC-------------------
T ss_pred -----------HHHHHHHHHHHhCCc-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhcc
Confidence 899999999999997 599999998 9999999999999999999832 45556666666666665
Q ss_pred ------cccCC----------CCCc------cCcccCccCccc----------cccccCCC-----CcccCCCCCCCC--
Q psy13464 366 ------WGRNE----------NITQ------HAVKRSPFDFAL----------WKSAKPGE-----PWYESAWGKGRP-- 406 (515)
Q Consensus 366 ------s~~~~----------~~t~------~~~Kr~~~DFaL----------WK~~~~ge-----p~W~SpwG~GRP-- 406 (515)
++... +++. +..+++| ++.. |-.....+ |.|+++||.++|
T Consensus 144 ~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~ 222 (497)
T 2csx_A 144 DHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNP-EFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFD 222 (497)
T ss_dssp --------------CCEEEEECTTSSHHHHHHHHHHCT-TSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTE
T ss_pred CCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCC-CeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCC
Confidence 23222 0000 0001111 1110 11111123 568999999999
Q ss_pred -Ccccc---------cchhhh---hhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccc
Q psy13464 407 -GWHIE---------CSAMAS---HFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRL 473 (515)
Q Consensus 407 -GWHiE---------CSAM~~---~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSk 473 (515)
||||+ ||+|.. +++ ++|||++|.|++||||+|++||++++ |. ++++.|+|+|+|+++|+||||
T Consensus 223 ~~~~i~vW~ds~~~~~s~~~~~~~~~~--p~di~~~G~D~~~~H~~~~~a~l~~~-g~-~~~~~~~~~G~v~~~G~KMSK 298 (497)
T 2csx_A 223 PEHTIYVWFDALFNYISALEDKVEIYW--PADLHLVGKDILRFHTVYWPAFLMSL-GY-ELPKKVFAHGWWTVEGKKMSK 298 (497)
T ss_dssp EEEEECSHHHHHTHHHHTTTTTHHHHC--SCSCEEEEGGGHHHHHTHHHHHHHHH-TC-CCCSCEEEECCEESSSSBCCT
T ss_pred CCceEEEecccchhhcccCCCcchhhC--CceEEEeecchhHhHHHHHHHHHHHc-CC-CCCcEEEECcEEEeCCceeCC
Confidence 89999 999987 677 78999999999999999999999987 74 567889999999999999999
Q ss_pred cccceeccccccccccCccccC
Q psy13464 474 RAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 474 s~Gnfit~~~li~~~y~~D~~~ 495 (515)
|+||+|+|+++++. ||+|+.|
T Consensus 299 S~GN~i~~~dli~~-~g~DalR 319 (497)
T 2csx_A 299 TLGNVVDPYEVVQE-YGLDEVR 319 (497)
T ss_dssp TTTCCCCHHHHHHH-HCHHHHH
T ss_pred cCCCCCCHHHHHHH-CCcHHHH
Confidence 99999999999999 9999765
No 6
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=4.3e-45 Score=386.23 Aligned_cols=252 Identities=17% Similarity=0.223 Sum_probs=201.4
Q ss_pred eEEEcCCccC--CCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHh
Q psy13464 54 KWYACGPTVY--DSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKI 131 (515)
Q Consensus 54 ~~y~cgptvy--d~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~ 131 (515)
++|+|||++| +.+||||+|++|.+|+++||++ +.|++|.+++|+|++|+||+++|++.
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r-~~G~~V~~~~g~D~~G~~i~~~a~~~------------------- 63 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHR-LDGYRTFFLTGTDEHGETVYRAAQAA------------------- 63 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHH-HTTCEEEEEEEEECCSHHHHHHHHHH-------------------
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHH-cCCCceeeecccCCchHHHHHHHHHc-------------------
Confidence 6899999996 9999999999999999999999 99999999999999999999988875
Q ss_pred hhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHH
Q psy13464 132 LHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKV 211 (515)
Q Consensus 132 ~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~ 211 (515)
+.++++.
T Consensus 64 --------------------------------------------------------g~~~~~~----------------- 70 (500)
T 2d5b_A 64 --------------------------------------------------------GEDPKAF----------------- 70 (500)
T ss_dssp --------------------------------------------------------TSCHHHH-----------------
T ss_pred --------------------------------------------------------CCCHHHH-----------------
Confidence 3333321
Q ss_pred HHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccc
Q psy13464 212 VRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRT 291 (515)
Q Consensus 212 ~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 291 (515)
+.+
T Consensus 71 -------------------------------------------------------------~~~---------------- 73 (500)
T 2d5b_A 71 -------------------------------------------------------------VDR---------------- 73 (500)
T ss_dssp -------------------------------------------------------------HHH----------------
T ss_pred -------------------------------------------------------------HHH----------------
Confidence 123
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccc--cHHHHHHHHHHHHHCCCeeeecC--CcEEEeccCCCCccee--
Q psy13464 292 VVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSE--FIPHIQSFIQTLLDTKQAYIGSD--HSVYFDVDSFPHYFKL-- 365 (515)
Q Consensus 292 ~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTe--hI~~iie~I~kLidnG~AYe~kd--GsVYFDv~~~~~YG~L-- 365 (515)
|.+.|.++|++|||. +|.++|+|+ |++.+++++++|.++|++|+ .+ |.++++...+-.++.|
T Consensus 74 ----------~~~~~~~~~~~lgi~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~-~~~~~~~~~~~~~~~~~~~l~~ 141 (500)
T 2d5b_A 74 ----------VSGRFKRAWDLLGIA-YDDFIRTTEERHKKVVQLVLKKVYEAGDIYY-GEYEGLYCVSCERFYTEKELVE 141 (500)
T ss_dssp ----------HHHHHHHHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEE-EEEEEEEETTTTEECCTTTSBT
T ss_pred ----------HHHHHHHHHHHhCCc-CCCCcccCCHHHHHHHHHHHHHHHHCCCEEe-cceEEecCCCcCcccCchhccC
Confidence 889999999999997 599999998 99999999999999999998 54 4444444445555554
Q ss_pred -----cccCC----------CCC------ccCcccCccCcccccccc--------CC--C-----CcccCCCCCCCC---
Q psy13464 366 -----WGRNE----------NIT------QHAVKRSPFDFALWKSAK--------PG--E-----PWYESAWGKGRP--- 406 (515)
Q Consensus 366 -----s~~~~----------~~t------~~~~Kr~~~DFaLWK~~~--------~g--e-----p~W~SpwG~GRP--- 406 (515)
++... +++ .+..+++| +|..|+..+ ++ + |.|+.+||.++|
T Consensus 142 g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~ 220 (500)
T 2d5b_A 142 GLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENP-DLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDE 220 (500)
T ss_dssp TBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCT-TSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEE
T ss_pred CcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCC
Confidence 22222 000 00112232 565554321 22 2 446889999999
Q ss_pred ------------------CcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeee-C
Q psy13464 407 ------------------GWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRG-T 467 (515)
Q Consensus 407 ------------------GWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v-~ 467 (515)
|||+||+ ..++++ .|||++|.|++||||+|++||++++ |. ++++.|+|+|+|++ +
T Consensus 221 ~~v~~vWfds~~~y~~~~g~~~~~~--~~~~~p--~di~~~G~D~~~fh~~~~~a~~~~~-g~-~~~~~v~~~G~v~~~~ 294 (500)
T 2d5b_A 221 NHVTFVWFDALLNYVSALDYPEGEA--YRTFWP--HAWHLIGKDILKPHAVFWPTMLKAA-GI-PMYRHLNVGGFLLGPD 294 (500)
T ss_dssp EEEECHHHHHHTHHHHTTTTTTCHH--HHHHGG--GEEEEEEGGGHHHHHTHHHHHHHHH-TC-CCCSEEEEECCEECTT
T ss_pred CCeeEEccccchhhHHHcCCCCCch--HHHcCC--CeEEEEeechhhhHHHHHHHHHHHc-CC-CCCcEEEECceEEeCC
Confidence 8999997 566774 4999999999999999999999987 74 56789999999999 9
Q ss_pred CCcccccccceeccccccccccCccccC
Q psy13464 468 DGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 468 G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
|+|||||+||+|+|.++++. ||+|+.|
T Consensus 295 G~KMSKS~GN~i~p~d~i~~-~g~DalR 321 (500)
T 2d5b_A 295 GRKMSKTLGNVVDPFALLEK-YGRDALR 321 (500)
T ss_dssp SSCCCTTTTCCCCHHHHHHH-HCHHHHH
T ss_pred CCcccccCCCCCCHHHHHHh-cCcHHHH
Confidence 99999999999999999999 9999755
No 7
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=1.1e-42 Score=370.41 Aligned_cols=184 Identities=16% Similarity=0.193 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHcCCCCCcccccccc--cHHHHHHHHHHHHHCCCeeeecCCcEEEeccC--CCCccee------------
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSE--FIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS--FPHYFKL------------ 365 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTe--hI~~iie~I~kLidnG~AYe~kdGsVYFDv~~--~~~YG~L------------ 365 (515)
|.++|.+++++|||.. |.+.|+|+ |++.+++++++|.++|++|+ .++.||||++. +..++.+
T Consensus 83 ~~~~~~~~~~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~-~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~ 160 (524)
T 2x1l_A 83 NSDVFQRLQEKLNISF-DRFIRTSDADHYEASKAIWKRMADAGDIYL-DAYKGWYSIRDERFFTENETTEQPDGTRIATE 160 (524)
T ss_dssp HHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEE-EEEEEEEETTTTEEECGGGEEECTTSCEEETT
T ss_pred HHHHHHHHHHHcCCcC-CCCeecCCHHHHHHHHHHHHHHHHCCCEEe-eeeeeeccCccCccccHHHhccCCCCCccccc
Confidence 8899999999999975 99999998 99999999999999999998 78999999986 5555553
Q ss_pred cccCC----------CCC-----------cc-------Cc--------ccCccCccc------cccccCCCCc-----c-
Q psy13464 366 WGRNE----------NIT-----------QH-------AV--------KRSPFDFAL------WKSAKPGEPW-----Y- 397 (515)
Q Consensus 366 s~~~~----------~~t-----------~~-------~~--------Kr~~~DFaL------WK~~~~gep~-----W- 397 (515)
++..+ +++ .. .. +++..|+++ |+...|+++. |
T Consensus 161 ~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWf 240 (524)
T 2x1l_A 161 TGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWV 240 (524)
T ss_dssp TCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHH
T ss_pred cCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEec
Confidence 22221 000 00 00 133456655 7777676542 6
Q ss_pred cCCC----CCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccc
Q psy13464 398 ESAW----GKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRL 473 (515)
Q Consensus 398 ~Spw----G~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSk 473 (515)
+|+| +.|+|+ ||++|..+++ +.|||++|.|++||||+||+||++++ |..++.++|+| |+|+++|+||||
T Consensus 241 ds~~~~~~~~g~p~---~~~~~~~~~~--p~di~~~G~D~~~fh~~~~~a~l~~~-g~~~~~~v~~h-G~v~~~G~KMSK 313 (524)
T 2x1l_A 241 DALTNYLTGVGFPD---TESESFRRYW--PADLHMIGKDIIRFHTVYWPAFLMSA-GLPLPKRIFAH-GWLLNRGEKMSK 313 (524)
T ss_dssp HHHTHHHHTTTTTC---TTSHHHHHHC--SCSEEEEEGGGHHHHHTHHHHHHHHH-TCCCCSCEEEE-CCEEECSCSEET
T ss_pred CCchHHHHHcCCCC---CchHHHHhhC--CCeEEEEeechhHhHHHHHHHHHHHC-CCCCCcEEEEC-cEEEeCCcccCC
Confidence 7877 788887 8999999998 57999999999999999999999997 75544588999 999999999999
Q ss_pred cccceeccccccccccCccccC
Q psy13464 474 RAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 474 s~Gnfit~~~li~~~y~~D~~~ 495 (515)
|+||+|+|.++++. ||+|+.|
T Consensus 314 S~GN~v~p~d~i~~-~g~DalR 334 (524)
T 2x1l_A 314 SIGNVVDPVNLVDT-FGLDQVR 334 (524)
T ss_dssp TTEESSCHHHHHHH-HCHHHHH
T ss_pred cCCCCCCHHHHHHH-cChHHHH
Confidence 99999999999999 9999765
No 8
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=1.5e-42 Score=371.61 Aligned_cols=171 Identities=12% Similarity=0.093 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHcCCCCCcccccccc-cHH-HHHHHHHHHHHCC----------------CeeeecCCcEEEeccCC-CCc
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSE-FIP-HIQSFIQTLLDTK----------------QAYIGSDHSVYFDVDSF-PHY 362 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTe-hI~-~iie~I~kLidnG----------------~AYe~kdGsVYFDv~~~-~~Y 362 (515)
|++.|+++|+.|||. ||.+ |+|+ |++ .+++++++|+++| ++|. . + ||+++.+ +.+
T Consensus 107 ~~~~~~~~l~~Lgi~-~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~-~--~-~~~~~~~~~~~ 180 (523)
T 1irx_A 107 FMRKFEEEVEKLGIE-VDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLP-E--N-WWPAMVYCPEH 180 (523)
T ss_dssp HHHHHHHHHHTTTCC-CEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCC-T--T-CCSEEEECTTT
T ss_pred HHHHHHHHHHHcCCC-ceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhcccccccccc-C--C-ceeccccchhh
Confidence 999999999999996 6999 9999 999 9999999999999 7886 3 3 8877654 455
Q ss_pred ceecccCCCCCccCcccCccCccccccccCCCCcccCCC-CCCCCCcccccchhhhhhcCCCceEeeecccccCCc----
Q psy13464 363 FKLWGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAW-GKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPH---- 437 (515)
Q Consensus 363 G~Ls~~~~~~t~~~~Kr~~~DFaLWK~~~~gep~W~Spw-G~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPH---- 437 (515)
|++... . . ...+++.+|++ ++|++.|.++| |+|+||||||| +|...+||..+| .+|+||++||
T Consensus 181 ~~~~~~-~--~--~~~~~~~~f~~----~~g~~~~~d~~~G~g~~~w~~d~-~~~~~~l~~~vd--~~G~Dh~~~h~s~~ 248 (523)
T 1irx_A 181 RREAEI-I--E--WDGGWKVKYKC----PEGHEGWVDIRSGNVKLRWRVDW-PMRWSHFGVDFE--PAGKDHLVAGSSYD 248 (523)
T ss_dssp CCEECE-E--E--ECSSSCEEECC----SSSCCCEECTTSSCEEECHHHHH-HHHHHHSCCCBC--CEEHHHHSTTSHHH
T ss_pred CCcccc-c--c--cCCCCceeeee----cCCCccccCCcCCCCCCCCCcch-HhhHHHcCCCCc--CCCcCccCCCcchh
Confidence 655321 1 1 11226789988 57889999999 99999999999 899999987665 9999999999
Q ss_pred cchhHHHHhhhcCCCCcccEEEEeeeeeeC--CCcccccccceeccccccccccCccccC
Q psy13464 438 HENEEAQSCAFHNQSQWVNYWLHTGHLRGT--DGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 438 HENEiAQsea~~g~~~~a~yWlH~G~v~v~--G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
|.|++|| +| +|..++ +|+|+|+|+.+ |+|||||+||+||+.++++. |+.|+.|
T Consensus 249 ~~~~i~~-~a-lG~~~p--~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~-~~pdalR 303 (523)
T 1irx_A 249 TGKEIIK-EV-YGKEAP--LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEV-LEPGLVR 303 (523)
T ss_dssp HHHHHHH-HH-HCCCCC--BCCEECCEEESCC---------CCCCHHHHHTT-SCHHHHH
T ss_pred hHHHHHH-HH-hCCCCC--eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHH-cCHHHHH
Confidence 9999998 44 475443 79999999999 88999999999999999999 9999654
No 9
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=8.7e-40 Score=355.46 Aligned_cols=174 Identities=10% Similarity=-0.021 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHcCCCCCccccccccc--HHHHHHHHHHHHHCCCee-----eecCCcEEEeccCCCCcc-----eecc
Q psy13464 300 FRYELEYFESMEKFGVLPPTRATRVSEF--IPHIQSFIQTLLDTKQAY-----IGSDHSVYFDVDSFPHYF-----KLWG 367 (515)
Q Consensus 300 ~~y~~~F~edm~aLNI~~PD~~pRaTeh--I~~iie~I~kLidnG~AY-----e~kdGsVYFDv~~~~~YG-----~Ls~ 367 (515)
.++.++|.+++++|||.+ |.|+|+|++ .+.+++++++|.++|++| + .+|.+||+++++.+.. .+.+
T Consensus 217 ~~~~~~~~~~~~~LgI~~-D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~-~~G~~~~~~~~~g~~~~l~~~vi~k 294 (592)
T 1iq0_A 217 NRILLAQMATMHALNARY-DLLVWESDIVRAGLLQKALALLEQSPHVFRPREGK-YAGALVMDASPVIPGLEDPFFVLLR 294 (592)
T ss_dssp HHHHHHHHHHHHHTTCCC-SEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSST-TTTCEEEECTTTSCSCSCCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEe-EEeccCCcccccchHHHHHHHHHHCCCcccCcccC-cCCCEEEechhcCCCCCCCceEEEe
Confidence 349999999999999997 999999987 889999999999999999 6 7999999998875432 3444
Q ss_pred cCCCCCccCcccCccCccccccccC----CCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHH
Q psy13464 368 RNENITQHAVKRSPFDFALWKSAKP----GEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEA 443 (515)
Q Consensus 368 ~~~~~t~~~~Kr~~~DFaLWK~~~~----gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiA 443 (515)
+|+ +..|..+| +++++||.+.. -+++|.+||| |||||+||++|....++..++||+++.++ ..+
T Consensus 295 sdG--~~~Y~~~D-~a~~~~Kl~l~~~~~~~~~~~~p~~--r~~w~~~g~~~~~~~~~~~iyV~g~~h~~-------~~~ 362 (592)
T 1iq0_A 295 SNG--TATYYAKD-IAFQFWKMGILEGLRFRPYENPYYP--GLRTSAPEGEAYTPKAEETINVVDVRQSH-------PQA 362 (592)
T ss_dssp TTS--CBCHHHHH-HHHHHHHTTSSCCCEEEECCCSSCT--TCEEEEEEEEECCCCCSEEEEEEESSSCC-------CHH
T ss_pred cCC--ceEEecch-HHHHHHHhhhhhhhhhhhhhcCcch--hhcccccCcccCCCCCCEEEEEEeccHHH-------HHH
Confidence 555 44555555 67799972111 1146899997 99999999999988888889999986444 444
Q ss_pred HHhhhc---CCCCc-ccEEEEe--eeeeeCCCcccccccceeccccccccc
Q psy13464 444 QSCAFH---NQSQW-VNYWLHT--GHLRGTDGTRRLRAARFITNLSGSTIG 488 (515)
Q Consensus 444 Qsea~~---g~~~~-a~yWlH~--G~v~v~G~KMSks~Gnfit~~~li~~~ 488 (515)
|..++. |. ++ ++.|+|. |+|+++|+|||||+||+|+++++++.|
T Consensus 363 ~~~~~~~alG~-~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~~~ 412 (592)
T 1iq0_A 363 LVRAALALAGY-PALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEA 412 (592)
T ss_dssp HHHHHHHHTTC-HHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHH
T ss_pred HHHHHHHHcCC-CCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHHHHHHH
Confidence 444433 64 55 5678888 779999999999999999999999986
No 10
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=4.4e-37 Score=341.07 Aligned_cols=259 Identities=12% Similarity=-0.005 Sum_probs=202.7
Q ss_pred eEEEcCCccCCCCCCcchhh-HHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHhh
Q psy13464 54 KWYACGPTVYDSPHIGHAVC-NVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKIL 132 (515)
Q Consensus 54 ~~y~cgptvyd~~HiGhaR~-~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~~ 132 (515)
-+.+.-|+||+.+||||+|+ ||.+|+++||+| +.|++|.|++|.|++++||..+|++.
T Consensus 5 ~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~r-m~G~~V~~v~G~D~hG~pie~~A~k~-------------------- 63 (722)
T 1rqg_A 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLR-LKGEDVVFICGTDEHGTPISFRALKE-------------------- 63 (722)
T ss_dssp EEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHH-HTTCEEEEEEEEBCCSHHHHHHHHHH--------------------
T ss_pred EEecCCCCCCCchhhchhhccHHHHHHHHHHHH-hcCCceEecceeCCCCHHHHHHHHHc--------------------
Confidence 34456699999999999998 999999999999 99999999999999999999999875
Q ss_pred hccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHHH
Q psy13464 133 HQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVV 212 (515)
Q Consensus 133 ~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 212 (515)
+.++++++
T Consensus 64 -------------------------------------------------------G~~p~e~~----------------- 71 (722)
T 1rqg_A 64 -------------------------------------------------------GRSPREIV----------------- 71 (722)
T ss_dssp -------------------------------------------------------TCCHHHHH-----------------
T ss_pred -------------------------------------------------------CCCHHHHH-----------------
Confidence 44444322
Q ss_pred HHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccch
Q psy13464 213 RKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTV 292 (515)
Q Consensus 213 ~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 292 (515)
.+
T Consensus 72 -------------------------------------------------------------~~----------------- 73 (722)
T 1rqg_A 72 -------------------------------------------------------------DE----------------- 73 (722)
T ss_dssp -------------------------------------------------------------HH-----------------
T ss_pred -------------------------------------------------------------HH-----------------
Confidence 33
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCCCCCcccccccc--cHHHHHHHHHHHHHCCCeeeecCCcEEEeccCC-----------
Q psy13464 293 VFEFLFNFRYELEYFESMEKFGVLPPTRATRVSE--FIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSF----------- 359 (515)
Q Consensus 293 ~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTe--hI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~----------- 359 (515)
|++.|.+++++|||.. |.|.|+++ |.+.+++++++|.++|++|+ .+..||||++..
T Consensus 74 ---------~~~~~~~~~~~lgis~-D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~-~~~~v~y~~~~~tfl~d~~v~gt 142 (722)
T 1rqg_A 74 ---------FHEQIKITFQRAKISF-DFFGRTELPIHYKLSQEFFLKAYENGHLVK-KVTKQAYCEHDKMFLPDRFVIGT 142 (722)
T ss_dssp ---------HHHHHHHHHHHHTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEE-EEEEEEEBTTTTBCCCGGGCCSB
T ss_pred ---------HHHHHHHHHHHhCCCC-CCCeeCCCHHHHHHHHHHHHHHHHCCCEEe-cceeeeecCCCCcCcchhhcccc
Confidence 9999999999999985 99999996 99999999999999999998 788999999864
Q ss_pred -------CCcceecc---c-----CCC-----C---CccC--c----------ccCccCcc---ccccc---------cC
Q psy13464 360 -------PHYFKLWG---R-----NEN-----I---TQHA--V----------KRSPFDFA---LWKSA---------KP 392 (515)
Q Consensus 360 -------~~YG~Ls~---~-----~~~-----~---t~~~--~----------Kr~~~DFa---LWK~~---------~~ 392 (515)
+.||.+.. . ++. . +... . +....++. .|+.. +.
T Consensus 143 cP~c~~~~~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~ 222 (722)
T 1rqg_A 143 CPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEE 222 (722)
T ss_dssp CSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTT
T ss_pred cCccCCccCCcchhhhcccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHC
Confidence 24554411 1 110 0 0000 0 00001111 26644 45
Q ss_pred CCCcc----cCCCCCCCC----Ccc-----------cccchhhh-------------hhcC--C--CceEeeecccccCC
Q psy13464 393 GEPWY----ESAWGKGRP----GWH-----------IECSAMAS-------------HFFG--G--QVDLHTGGIDLKFP 436 (515)
Q Consensus 393 gep~W----~SpwG~GRP----GWH-----------iECSAM~~-------------~~lG--~--~~DIH~GG~DL~FP 436 (515)
|.+-| +.+||-++| ||| |+|.+++. ++++ + ..++|++|.|++|+
T Consensus 223 gl~dw~ISR~~~WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~f 302 (722)
T 1rqg_A 223 GLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPF 302 (722)
T ss_dssp CCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHH
T ss_pred CCcccceeccccCccccCccccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEcccccccc
Confidence 66667 889999999 688 88877663 3564 3 35699999999999
Q ss_pred ccchhHHHHhhhcC--------CCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 437 HHENEEAQSCAFHN--------QSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 437 HHENEiAQsea~~g--------~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
|...++|+.+++.+ ..++++.|+|+|||+++|+|||||+||+|+|+++++. ||+|+.|
T Consensus 303 H~~~wpA~l~~~~~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~-ygaDalR 368 (722)
T 1rqg_A 303 HAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDV-FPADYLR 368 (722)
T ss_dssp HHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTT-SCHHHHH
T ss_pred chhhhHHHHhccCCCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHh-cCchHHH
Confidence 88888999998731 2356789999999999999999999999999999999 9999765
No 11
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=6.1e-37 Score=328.11 Aligned_cols=264 Identities=16% Similarity=0.150 Sum_probs=175.0
Q ss_pred CccccccCCCCceeEEEcCCccC--CCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhh
Q psy13464 41 TKVPFIIQNKNHLKWYACGPTVY--DSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKT 118 (515)
Q Consensus 41 ~k~~f~~~~~~~v~~y~cgptvy--d~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~ 118 (515)
+..|+.|.+-++-++|+|||++| +.+||||+|++|.+|+++||++ +.|++|.+++|+||+|+||+.+|++.
T Consensus 13 ~~~~~~~~~~~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr-~~G~~V~~~~g~dd~g~ki~~~a~~~------ 85 (536)
T 4dlp_A 13 EAQTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQR-LNGMDVYFLTGTDEHGIKMLQSARKE------ 85 (536)
T ss_dssp -----------CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHH-HTTCEEEEEEEECCCSHHHHHHHHHH------
T ss_pred cccccCCCcCCCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHH-hcCCcEEEecCcCCcchHHHHHHHHc------
Confidence 34567666655568999999999 9999999999999999999999 89999999999999999999999875
Q ss_pred hhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHH
Q psy13464 119 VAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198 (515)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~ 198 (515)
+.++++++
T Consensus 86 ---------------------------------------------------------------------g~~~~~~~--- 93 (536)
T 4dlp_A 86 ---------------------------------------------------------------------GITPRDLA--- 93 (536)
T ss_dssp ---------------------------------------------------------------------TSCHHHHH---
T ss_pred ---------------------------------------------------------------------CCCHHHHH---
Confidence 44444322
Q ss_pred HHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHH
Q psy13464 199 FLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLIL 278 (515)
Q Consensus 199 ~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 278 (515)
.+
T Consensus 94 ---------------------------------------------------------------------------~~--- 95 (536)
T 4dlp_A 94 ---------------------------------------------------------------------------DR--- 95 (536)
T ss_dssp ---------------------------------------------------------------------------HH---
T ss_pred ---------------------------------------------------------------------------HH---
Confidence 23
Q ss_pred HHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccc--cHHHHHHHHHHHHHCCCeeeecCCcEEEec
Q psy13464 279 IQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSE--FIPHIQSFIQTLLDTKQAYIGSDHSVYFDV 356 (515)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTe--hI~~iie~I~kLidnG~AYe~kdGsVYFDv 356 (515)
|.+.|.++|++|||.+ |.|+|+|+ |++.+++++++|.++|++|+ +++.+|||+
T Consensus 96 -----------------------~~~~~~~~l~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~-~~~~~~~~~ 150 (536)
T 4dlp_A 96 -----------------------NTSAFRRMAEVLNSSN-DDYIRTSEERHYKASQAIWQAMVANGDIYK-GGYAGWYSV 150 (536)
T ss_dssp -----------------------HHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEE-EEEEEEEET
T ss_pred -----------------------HHHHHHHHHHHcCCCC-CcceeCCCHHHHHHHHHHHHHHHHCCCEEE-eceeeeecC
Confidence 8999999999999996 88999997 99999999999999999998 889999999
Q ss_pred cCCCCc----------cee---cccCC----------CCCc------cCcccCccCcc----------ccccccCCCCcc
Q psy13464 357 DSFPHY----------FKL---WGRNE----------NITQ------HAVKRSPFDFA----------LWKSAKPGEPWY 397 (515)
Q Consensus 357 ~~~~~Y----------G~L---s~~~~----------~~t~------~~~Kr~~~DFa----------LWK~~~~gep~W 397 (515)
+....+ |.. ++... +++. ...+++| +|. -|-. .+-.-|
T Consensus 151 ~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~~l~--~~l~D~ 227 (536)
T 4dlp_A 151 RDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNP-GFIMPAERRNEIVSFVK--SGLKDL 227 (536)
T ss_dssp TTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHH--TCCCCE
T ss_pred CcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCC-CccCcHHHHHHHHHHHh--cCCCcc
Confidence 763311 211 11000 0000 0000110 000 0000 011112
Q ss_pred ----c-CCCCCCCCC---------------------cccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCC
Q psy13464 398 ----E-SAWGKGRPG---------------------WHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQ 451 (515)
Q Consensus 398 ----~-SpwG~GRPG---------------------WHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~ 451 (515)
. -.||--.|+ |.-+... -.+++ +.|+|..|.|++++|..+++|...++ |.
T Consensus 228 ~ISR~~~~WGipiP~~~~~v~yvWfda~~~y~s~~~~~~~~~~-~~~~~--p~dv~~~G~D~~~fh~~~~~a~l~a~-g~ 303 (536)
T 4dlp_A 228 SISRTTFDWGIPVPGDEKHVMYVWVDALTNYITALGYPDTTDE-RWAYW--PANAHIIGKDISRFHAVYWPAFLMSA-QL 303 (536)
T ss_dssp ECEEC--CCSCBCTTCTTSEECHHHHHHHHHHHTTTTTCTTSG-GGGGC--SCSEEEEEGGGHHHHHTHHHHHHHHT-TC
T ss_pred CCccCCCcCCeeCCCCCCCceEEeeCCcHHHHHhcCCCCCchH-HHhhC--CcceEEeechHHHHHHHHHHHHHHHC-CC
Confidence 1 236666563 2212211 12333 56899999999999999999999987 65
Q ss_pred CCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 452 SQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 452 ~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
.++.+.++| |+|+++|+|||||+||+|+|.++++. ||+|++|
T Consensus 304 ~~~~~v~~h-g~v~~~G~KMSKS~GNvi~p~d~i~~-~GaDalR 345 (536)
T 4dlp_A 304 PLPKRVFAH-GFLFNRGEKMSKSVGNVIDPFELVER-YGLDQLR 345 (536)
T ss_dssp CCCSCEEEE-CCEEC------------CCHHHHHHH-HCHHHHH
T ss_pred CCCcEEEee-eeEeeCCceecccCCCCCCHHHHHHH-cCcHHHH
Confidence 444466666 99999999999999999999999999 9999765
No 12
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=7.2e-36 Score=321.35 Aligned_cols=265 Identities=14% Similarity=0.056 Sum_probs=184.0
Q ss_pred cccCCCCceeEEEcCCccC--CCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhc
Q psy13464 45 FIIQNKNHLKWYACGPTVY--DSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKR 122 (515)
Q Consensus 45 f~~~~~~~v~~y~cgptvy--d~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~ 122 (515)
-.|++++++++|+|||++| +.+||||+|++|.+|+++||++ +.|++|.+++|++|+|+||+.+|+++
T Consensus 10 ~~~~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r-~~G~~V~~~~g~D~~G~~i~~~a~~~---------- 78 (560)
T 3h99_A 10 HGSMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQR-MRGHEVNFICADDAHGTPIMLKAQQL---------- 78 (560)
T ss_dssp -------CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHH-HTTCEEEEEEEEBCCSHHHHHHHHHH----------
T ss_pred CCCCCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHH-HcCCeEEEeeeecCcCcHHHHHHHHh----------
Confidence 4577889999999999999 9999999999999999999999 89999999999999999999998875
Q ss_pred ccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHh
Q psy13464 123 YFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRL 202 (515)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~ 202 (515)
+.++++++
T Consensus 79 -----------------------------------------------------------------g~~~~~~~------- 86 (560)
T 3h99_A 79 -----------------------------------------------------------------GITPEQMI------- 86 (560)
T ss_dssp -----------------------------------------------------------------TSCHHHHH-------
T ss_pred -----------------------------------------------------------------CCCHHHHH-------
Confidence 33333221
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhh
Q psy13464 203 IFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVS 282 (515)
Q Consensus 203 i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 282 (515)
.+
T Consensus 87 -----------------------------------------------------------------------~~------- 88 (560)
T 3h99_A 87 -----------------------------------------------------------------------GE------- 88 (560)
T ss_dssp -----------------------------------------------------------------------HH-------
T ss_pred -----------------------------------------------------------------------HH-------
Confidence 23
Q ss_pred ccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCccccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC
Q psy13464 283 LLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360 (515)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~ 360 (515)
|.+.|.++|++|||.. |.+.+++ +|.+.+++++++|.++|++|+ +++.+|||++.-.
T Consensus 89 -------------------~~~~~~~~~~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~-~~~~~~~~~~~~~ 147 (560)
T 3h99_A 89 -------------------MSQEHQTDFAGFNISY-DNYHSTHSEENRQLSELIYSRLKENGFIKN-RTISQLYDPEKGM 147 (560)
T ss_dssp -------------------HHHHHHHHHHHTTCCC-SEEEESSSHHHHHHHHHHHHHHHHTTCEEE-EEEEEEEETTTTE
T ss_pred -------------------HHHHHHHHHHHcCCCC-CCceeCCCHHHHHHHHHHHHHHHHCCCEEE-eeeeEeecCccCc
Confidence 8899999999999996 8888888 689999999999999999998 8999999987521
Q ss_pred ------------C------cceec--------ccCC-----CC---CccCcccCc-----cCccc----------cccc-
Q psy13464 361 ------------H------YFKLW--------GRNE-----NI---TQHAVKRSP-----FDFAL----------WKSA- 390 (515)
Q Consensus 361 ------------~------YG~Ls--------~~~~-----~~---t~~~~Kr~~-----~DFaL----------WK~~- 390 (515)
. ||... ..++ .. +....+... .+|+= |...
T Consensus 148 ~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~ 227 (560)
T 3h99_A 148 FLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQV 227 (560)
T ss_dssp ECCGGGEEEECTTTCCSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHH
T ss_pred eecchhcCCCCCCCCCcccccchhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHH
Confidence 1 11110 0000 00 000000000 00000 1000
Q ss_pred --------cCCC----CcccC-CCCCCCCC--------cccccchhh----------------hhhcCCCc---eEeeec
Q psy13464 391 --------KPGE----PWYES-AWGKGRPG--------WHIECSAMA----------------SHFFGGQV---DLHTGG 430 (515)
Q Consensus 391 --------~~ge----p~W~S-pwG~GRPG--------WHiECSAM~----------------~~~lG~~~---DIH~GG 430 (515)
+.+- .+.+. -||-..|+ |.-...... .+++..+. -+|+.|
T Consensus 228 ~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G 307 (560)
T 3h99_A 228 ANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIG 307 (560)
T ss_dssp HHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEE
T ss_pred HHHHHHHHhcCCCCCCccccCCcCCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEec
Confidence 0011 12233 35776664 221111111 11221221 199999
Q ss_pred ccccCCccchhHHHHhhhcCCCCcc-cEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 431 IDLKFPHHENEEAQSCAFHNQSQWV-NYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 431 ~DL~FPHHENEiAQsea~~g~~~~a-~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
.|++|+|+.++.|+..++ |. +++ ++++| |+|+++|+|||||+||+|+|++++++ ||+|++|
T Consensus 308 ~D~~~fh~~~~~a~l~~~-g~-~~p~~v~~h-g~v~~~G~KMSKS~GNvv~p~d~i~~-~GaDalR 369 (560)
T 3h99_A 308 KDIVYFLSLFWPAMLEGS-NF-RKPSNLFVH-GYVTVNGAKMSKSRGTFIKASTWLNH-FDADSLR 369 (560)
T ss_dssp GGGHHHHHTHHHHHHHHT-TB-CCCSEEEEE-CCEEETTEECCTTTTCCCBHHHHHHH-SCHHHHH
T ss_pred cccchhHHHHHHHHHHhC-CC-CCCcEEEEE-eEEEeCCeeccccCCCcCCHHHHHHH-cCcHHHH
Confidence 999999999999999996 64 445 44556 99999999999999999999999999 9999765
No 13
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=8e-36 Score=318.28 Aligned_cols=256 Identities=12% Similarity=0.109 Sum_probs=187.8
Q ss_pred eEEEcCC--ccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhHHHh
Q psy13464 54 KWYACGP--TVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIFKI 131 (515)
Q Consensus 54 ~~y~cgp--tvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~~~~ 131 (515)
+.|++.| .|++.+|||||+++|.+|+++||+| +.||+|.||+|++|++-||+.+|++.
T Consensus 10 ~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r-~~G~~v~~v~G~D~hG~~ie~~a~k~------------------- 69 (542)
T 3u1f_A 10 VFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHR-VKGERVFALTGTDEHGQKVAEAAKQK------------------- 69 (542)
T ss_dssp CEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH-HTTCCEEEEEEEECCSHHHHHHHHHT-------------------
T ss_pred CEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHH-hcCCCccccCccCcChHHHHHHHHHc-------------------
Confidence 3466664 6669999999999999999999999 99999999999999999999998875
Q ss_pred hhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHH
Q psy13464 132 LHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKV 211 (515)
Q Consensus 132 ~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~ 211 (515)
+.++++++
T Consensus 70 --------------------------------------------------------g~~~~e~~---------------- 77 (542)
T 3u1f_A 70 --------------------------------------------------------QVSPYDFT---------------- 77 (542)
T ss_dssp --------------------------------------------------------TSCHHHHH----------------
T ss_pred --------------------------------------------------------CCCHHHHH----------------
Confidence 44454322
Q ss_pred HHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccc
Q psy13464 212 VRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRT 291 (515)
Q Consensus 212 ~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 291 (515)
.+
T Consensus 78 --------------------------------------------------------------~~---------------- 79 (542)
T 3u1f_A 78 --------------------------------------------------------------TA---------------- 79 (542)
T ss_dssp --------------------------------------------------------------HH----------------
T ss_pred --------------------------------------------------------------HH----------------
Confidence 33
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCCCCCccccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCC----------
Q psy13464 292 VVFEFLFNFRYELEYFESMEKFGVLPPTRATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSF---------- 359 (515)
Q Consensus 292 ~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~---------- 359 (515)
|++.|.++|++|||.. |.+.|++ +|.+.+++++.+|.++|++|+ ..+.||||++.-
T Consensus 80 ----------~~~~~~~~~~~lgi~~-D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~-~~~~v~~~~~~~~~l~d~~v~~ 147 (542)
T 3u1f_A 80 ----------VAGEFKKCFEQMDYSI-DYFIRTTNEQHKAVVKELWTKLEQKGDIYL-GRYEGWYSISDESFLTPQNITD 147 (542)
T ss_dssp ----------HHHHHHHHHHHHTCCC-SEEEETTCHHHHHHHHHHHHHHHHTTCEEE-EEEEEEEETTTTEEECGGGEEE
T ss_pred ----------HHHHHHHHHHHhCCcc-CcCccCCCHHHHHHHHHHHHHHhhcCcEEe-cceeEEeeccCcccchhhhhhc
Confidence 8999999999999996 9999988 599999999999999999998 789999998751
Q ss_pred --CCcceecccC---C-------------CCCc------cCcccCccCccccccccC--------CC--------CcccC
Q psy13464 360 --PHYFKLWGRN---E-------------NITQ------HAVKRSPFDFALWKSAKP--------GE--------PWYES 399 (515)
Q Consensus 360 --~~YG~Ls~~~---~-------------~~t~------~~~Kr~~~DFaLWK~~~~--------ge--------p~W~S 399 (515)
+.+|...... + .++. ...+.+ .++..|+..+. +- -.|..
T Consensus 148 ~~~~~g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~-~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~ 226 (542)
T 3u1f_A 148 GVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHAN-PGCIVPEFRRREVIRAVEKGLPDLSVSRARATLH 226 (542)
T ss_dssp EECTTSCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHC-TTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGT
T ss_pred cccccCccccccCCCCCcceeeccccceecchhHHHHHHHHHhhc-ccccCCchhhHhHhhhhhccccccCccccccCcC
Confidence 2333321111 0 0000 000111 12222221100 00 02333
Q ss_pred CCCCCCCC--------c------ccccchhh--------------hhhcCCCceEeeecccccCCccchhHHHHhhhcCC
Q psy13464 400 AWGKGRPG--------W------HIECSAMA--------------SHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQ 451 (515)
Q Consensus 400 pwG~GRPG--------W------HiECSAM~--------------~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~ 451 (515)
.||-..|+ | ++.|+.+. ......+.|+|++|.|++|+|+.++.|++.+. |
T Consensus 227 ~WGipiP~~~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~-g- 304 (542)
T 3u1f_A 227 NWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSA-G- 304 (542)
T ss_dssp TCSCEETTEEEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHH-T-
T ss_pred CCCCccCCCcCeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhh-c-
Confidence 45544443 2 12222221 12223467999999999999999999999987 6
Q ss_pred CCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 452 SQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 452 ~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
.++++.++|+|+|..+|+|||||+||+|+|.++++. ||+|+.|
T Consensus 305 ~~~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~~-ygaD~lR 347 (542)
T 3u1f_A 305 LPLPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAEE-FGYDALK 347 (542)
T ss_dssp CCCCSCEEEECCCEETTBCCBTTTTBCCCHHHHHHH-HCHHHHH
T ss_pred ccccceeccccceecCCceeccccCCCCChhHHHhh-cCchHHH
Confidence 477899999999999999999999999999999999 9999765
No 14
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=1.7e-35 Score=324.14 Aligned_cols=297 Identities=14% Similarity=0.063 Sum_probs=199.7
Q ss_pred CCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhH
Q psy13464 49 NKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLI 128 (515)
Q Consensus 49 ~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~ 128 (515)
.+++|.+|.|||+|++.+||||+|+.|.+|+|+|+|+ +.||+|.++.+|+|++-.|-.-+..+. ++-.+.
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~-~~G~~V~~~~~i~D~G~Q~~~l~~~~~-~~g~~~-------- 186 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILR-FLGYEVEVQNYIDDLGIQFAQVYWGYL-RLKEEF-------- 186 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHH-HTTCEEEEEEEECTTSHHHHHHHHHHH-HCHHHH--------
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHH-HcCCCceEEecccchhHHHHHHHHHHH-HhCCcc--------
Confidence 4578999999999999999999999999999999999 899999999999999988754443321 010000
Q ss_pred HHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhh
Q psy13464 129 FKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILH 208 (515)
Q Consensus 129 ~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~ 208 (515)
+.++..+++ .. ..+||+- .+.+.-++..+.
T Consensus 187 ------------------------~~~~~~~~~---~~--------~~~~~~d---~~~g~~y~~~a~------------ 216 (629)
T 2zue_A 187 ------------------------ERIMNELRE---RG--------LKDNPID---HALGLLYVEVNR------------ 216 (629)
T ss_dssp ------------------------HHHHHHHHH---HT--------SCSCCHH---HHHHHHHHHHHH------------
T ss_pred ------------------------hhhhhhhcc---cc--------cccCcch---hhHHHHHHHHHH------------
Confidence 000000000 00 0111210 000111111110
Q ss_pred HHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcc-cccccCCCcccchhHhhhhhhhHHHHHhhccCCc
Q psy13464 209 QKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCE-ATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPL 287 (515)
Q Consensus 209 ~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~-~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 287 (515)
.+.+ .+++.+++.+.+..+ +.| ..|+ .
T Consensus 217 ---------~~~~-----------~~~~~~~~~~~~~~~---e~gd~~~~-------------~---------------- 244 (629)
T 2zue_A 217 ---------RLED-----------NPELENEIRDIMKKL---ESGELYGR-------------K---------------- 244 (629)
T ss_dssp ---------HHHH-----------CGGGHHHHHHHHHHH---HHSSSCCH-------------H----------------
T ss_pred ---------HHhc-----------CchHHHHHHHHHHhc---ccccHHHH-------------H----------------
Confidence 0000 012222333332211 111 3442 2
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHcCCCCCccccccccc--HHHHHHHHHHHHHCCCee-----eecCCcEEEeccCCC
Q psy13464 288 TLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEF--IPHIQSFIQTLLDTKQAY-----IGSDHSVYFDVDSFP 360 (515)
Q Consensus 288 ~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTeh--I~~iie~I~kLidnG~AY-----e~kdGsVYFDv~~~~ 360 (515)
+..++.++|.+++++|||.+ |.|+|+|++ .+.|++++++|.++|++| + .+|.+||+++++.
T Consensus 245 ----------~~~~~~~~f~~~~~~L~I~~-D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge-~~Ga~~v~~~~~g 312 (629)
T 2zue_A 245 ----------LAEEVVRAQMVTTYKLGVKY-DLLVWESDIVRRKLFEIALELLSKNENFYIPSDGK-YRGAFVMDLRKLF 312 (629)
T ss_dssp ----------HHHHHHHHHHHHHHHHTCCC-SEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSST-TTTCEEEECTTTC
T ss_pred ----------HHHHHHHHHHHHHHHcCCcc-ccccCcCccccchhHHHHHHHHHHCCCccccccCC-cCCcEEEECcccC
Confidence 33449999999999999997 999999987 889999999999999999 6 7999999999875
Q ss_pred Ccc-----eecccCCCCCccCcccCccCccccc--------cccCC-CCcc-cCCCCCCCCCcccccchhhhhhcCCCce
Q psy13464 361 HYF-----KLWGRNENITQHAVKRSPFDFALWK--------SAKPG-EPWY-ESAWGKGRPGWHIECSAMASHFFGGQVD 425 (515)
Q Consensus 361 ~YG-----~Ls~~~~~~t~~~~Kr~~~DFaLWK--------~~~~g-ep~W-~SpwG~GRPGWHiECSAM~~~~lG~~~D 425 (515)
... .+.++|+ +..|..+| +.+++|| ..++. ++.| .+|||.|+|| +...++..++
T Consensus 313 ~~~~~~~~v~~ksdG--~~~Y~~~D-iay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg--------~~~~~d~~Iy 381 (629)
T 2zue_A 313 PDMKNPILVLRRSDG--TATYTGKD-IAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPN--------KFGNANIVIN 381 (629)
T ss_dssp SSSSCCEEEEECTTS--CBCHHHHH-HHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTT--------SSCCCSEEEE
T ss_pred CccccCceEEEecCC--ccccchhh-HHHHHHHhhcccccccCCcccccccccCCCCCCCCC--------ccCCCCcEEE
Confidence 332 3445555 44555555 6669997 44332 3334 5899999999 3445667789
Q ss_pred EeeecccccCCccchhHHHHhhhc---CCCCc-ccEEEEe--eeeeeCCCccccccc--ceeccccccccc
Q psy13464 426 LHTGGIDLKFPHHENEEAQSCAFH---NQSQW-VNYWLHT--GHLRGTDGTRRLRAA--RFITNLSGSTIG 488 (515)
Q Consensus 426 IH~GG~DL~FPHHENEiAQsea~~---g~~~~-a~yWlH~--G~v~v~G~KMSks~G--nfit~~~li~~~ 488 (515)
||++|.|+-| +|..++. |. ++ ++.|+|. |+|+++|+|||||+| |+|++++|++++
T Consensus 382 V~g~~q~~~~-------~~l~~~l~~lG~-~~~~~~~~h~~~g~V~~~~~KMSkr~G~~n~v~l~dLl~e~ 444 (629)
T 2zue_A 382 VIGAEQKHPQ-------LAIKYALQLLGF-EDAAANLYHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEA 444 (629)
T ss_dssp EEEGGGHHHH-------HHHHHHHHHTTC-HHHHHTEEEEEECCEEBTTBCCCTTTTTTTTCBHHHHHHHH
T ss_pred EEeCcHhhHH-------HHHHHHHHHcCC-CCCCCeEEEEEeeeEEcCCCcccCCCCCCCeeeHHHHHHHH
Confidence 9998876444 5555443 74 55 6678888 889999999999999 999999999974
No 15
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=1.7e-34 Score=311.76 Aligned_cols=265 Identities=13% Similarity=0.114 Sum_probs=183.8
Q ss_pred CccccccCCC-CceeEEEcCCccC--CCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhh
Q psy13464 41 TKVPFIIQNK-NHLKWYACGPTVY--DSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYK 117 (515)
Q Consensus 41 ~k~~f~~~~~-~~v~~y~cgptvy--d~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~ 117 (515)
+..+|-|... +.-++|+|+|++| +.+||||+|++|.+|+++||+| +.|++|.+++|+||+|+||+.+|++.
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r-~~G~~V~~~~g~dd~G~ki~~~a~~~----- 86 (564)
T 3kfl_A 13 EAQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHR-VKGEEVFVMTGTDEHGQKVAEAAAKQ----- 86 (564)
T ss_dssp -----------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH-HHTCCEEEEEEEECCSHHHHHHHHHT-----
T ss_pred hhhhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHH-HcCCcEEEecCcCCCCcHHHHHHHHc-----
Confidence 3456766653 3468999999988 9999999999999999999999 89999999999999999999999875
Q ss_pred hhhhcccchhHHHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHH
Q psy13464 118 TVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKR 197 (515)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~ 197 (515)
+.++++.+
T Consensus 87 ----------------------------------------------------------------------g~~p~~~~-- 94 (564)
T 3kfl_A 87 ----------------------------------------------------------------------GVSPMDFT-- 94 (564)
T ss_dssp ----------------------------------------------------------------------TCCHHHHH--
T ss_pred ----------------------------------------------------------------------CCCHHHHH--
Confidence 44454322
Q ss_pred HHHHhHHHHhhHHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHH
Q psy13464 198 YFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLI 277 (515)
Q Consensus 198 ~~~~~i~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 277 (515)
.+
T Consensus 95 ----------------------------------------------------------------------------~~-- 96 (564)
T 3kfl_A 95 ----------------------------------------------------------------------------TS-- 96 (564)
T ss_dssp ----------------------------------------------------------------------------HH--
T ss_pred ----------------------------------------------------------------------------HH--
Confidence 33
Q ss_pred HHHhhccCCccccchhhhhhhhHHHHHHHHHHHHHcCCCCCccccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEe
Q psy13464 278 LIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFD 355 (515)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFD 355 (515)
|.+.|.+++++|||.+ |.|.|+| +|.+.+++++++|.++|++|+ +++.+|||
T Consensus 97 ------------------------~~~~~~~~~~~lgi~~-D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~-~~~~~~y~ 150 (564)
T 3kfl_A 97 ------------------------VSSEFKQCFQEMNYDM-NYFIRTTNPTHEKLVQDIWKKLAAKGDIYL-GKYEGWYS 150 (564)
T ss_dssp ------------------------HHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHHTCEEE-EEEEEEEE
T ss_pred ------------------------HHHHHHHHHHHcCCCC-CccccCCCHHHHHHHHHHHHHHHHCCCEEE-eeeeEEec
Confidence 8999999999999996 8899999 499999999999999999998 78899999
Q ss_pred ccCCCC------------cceec------ccCC----------CCCc------cCcccCccCcc----------cccccc
Q psy13464 356 VDSFPH------------YFKLW------GRNE----------NITQ------HAVKRSPFDFA----------LWKSAK 391 (515)
Q Consensus 356 v~~~~~------------YG~Ls------~~~~----------~~t~------~~~Kr~~~DFa----------LWK~~~ 391 (515)
++...- +|... +... .++. ...+.++ +|. -|=.
T Consensus 151 ~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~wl~-- 227 (564)
T 3kfl_A 151 VSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHP-NCIVPEFRRREVIKTVE-- 227 (564)
T ss_dssp TTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHH--
T ss_pred CCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHh--
Confidence 876321 22211 1111 0000 0000110 110 0000
Q ss_pred CCCC----cc----cCCCCCCCCC---------------------cccccchh------h--hhhcCCCceEeeeccccc
Q psy13464 392 PGEP----WY----ESAWGKGRPG---------------------WHIECSAM------A--SHFFGGQVDLHTGGIDLK 434 (515)
Q Consensus 392 ~gep----~W----~SpwG~GRPG---------------------WHiECSAM------~--~~~lG~~~DIH~GG~DL~ 434 (515)
.|-. +. +-.||---|| ||-+...- - .+++ +.|+|..|.|++
T Consensus 228 ~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~w--p~dv~~~GkDii 305 (564)
T 3kfl_A 228 KGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRW--PADVHVVGKDIL 305 (564)
T ss_dssp HCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCC--SCSEEEEEGGGH
T ss_pred CCCCCccccCcCCCCCCCCeecCCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcC--ccceEEEeeccc
Confidence 0101 11 1234444443 11111000 0 2222 458999999999
Q ss_pred CCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 435 FPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 435 FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
+.|.-.+.|...++ |. ++++..+..|+|+.+|+|||||+||+|+|.++++. ||+|++|
T Consensus 306 ~FH~~~wpa~L~a~-g~-~~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~~-~G~DalR 363 (564)
T 3kfl_A 306 KFHAIYWPAFLMSA-EL-PLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKE-FGIDALK 363 (564)
T ss_dssp HHHHTHHHHHHHHT-TC-CCCSCEEEECCEEETTEECCTTTTCCCCHHHHHHH-HCHHHHH
T ss_pred chHHHHHHHHHHhC-CC-CCCcEEEEcccEeeCCccccccCCCCCCHHHHHHH-cCcHHHH
Confidence 99999999999887 75 44544444499999999999999999999999999 9999765
No 16
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.97 E-value=3.3e-32 Score=297.35 Aligned_cols=285 Identities=13% Similarity=0.080 Sum_probs=194.9
Q ss_pred CCCceeEEEcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhhhhhhhhhhhcccchhH
Q psy13464 49 NKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLI 128 (515)
Q Consensus 49 ~~~~v~~y~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l~~~y~~~~~~~~~~~~ 128 (515)
.+++|.+|.|||||++.+||||+|+.|..|+|+|+|+ +.||+|.++.+++|.+--|-.-+.. ++.|..+...-..+
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~-~~G~~V~~~~~i~D~G~Q~~~l~~~-~~~~g~~~~~~~~~-- 216 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYE-KLGWEVIRMNYLGDWGKQFGLLAVG-FERYGNEEALVKDP-- 216 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHH-HTTCEEEEEEEEBCCSHHHHHHHHH-HHHHCCHHHHHHCH--
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHH-HcCCCeeEEEeecCcchHHHHHHHH-HHHhCchhhccCCC--
Confidence 4578999999999999999999999999999999999 8999999999999999887555544 33333221100000
Q ss_pred HHhhhccccccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhh
Q psy13464 129 FKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILH 208 (515)
Q Consensus 129 ~~~~~~~~~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~ 208 (515)
+.|++ +.++++ .+.+..+- +..|.+++|+.+|+.
T Consensus 217 -----------i~~l~--------~~Y~~~-~~~~~~~~----e~g~~~~~i~~~A~~---------------------- 250 (607)
T 1f7u_A 217 -----------IHHLF--------DVYVRI-NKDIEEEG----DSIPLEQSTNGKARE---------------------- 250 (607)
T ss_dssp -----------HHHHH--------HHHHHH-HHHHHHST----TSSCHHHHSSHHHHH----------------------
T ss_pred -----------hHHHH--------HHHHHH-HHHhhhcc----ccccccHHHHHHHHH----------------------
Confidence 11221 222221 12222220 001122333332221
Q ss_pred HHHHHHHHHHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCcc
Q psy13464 209 QKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLT 288 (515)
Q Consensus 209 ~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 288 (515)
++.+.++ -|.+.-+.| ..
T Consensus 251 ---------------------------~~~~le~-----gd~e~~~~w-------------~~----------------- 268 (607)
T 1f7u_A 251 ---------------------------YFKRMED-----GDEEALKIW-------------KR----------------- 268 (607)
T ss_dssp ---------------------------HHHHHHH-----TCHHHHHHH-------------HH-----------------
T ss_pred ---------------------------HHHHhhC-----CCHHHHHHH-------------HH-----------------
Confidence 1100000 000111112 12
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHcCCCCCcccccccccH-HHHHHHHHHHHHCCCeeeecCCcEEEeccCCCC--c-ce
Q psy13464 289 LRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATRVSEFI-PHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPH--Y-FK 364 (515)
Q Consensus 289 ~~~~~~~~~~~~~y~~~F~edm~aLNI~~PD~~pRaTehI-~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~~--Y-G~ 364 (515)
|..++.++|.+++++|||.+ |.|+++|+++ +.|++++++|.++|++|+ ++|.+||+++++.+ - -.
T Consensus 269 ---------~~~~~~~~~~~~~~~L~V~f-D~~~~ES~~~~~~~~~vi~~L~~kG~~ye-~dGa~~~~~~~~g~~~d~~v 337 (607)
T 1f7u_A 269 ---------FREFSIEKYIDTYARLNIKY-DVYSGESQVSKESMLKAIDLFKEKGLTHE-DKGAVLIDLTKFNKKLGKAI 337 (607)
T ss_dssp ---------HHHHHHHHHHHHHHHTTCCC-SEEEEGGGCCHHHHHHHHHHHHHTTCEEE-ETTEEEEEGGGTCTTTCEEE
T ss_pred ---------HHHHHHHHHHHHHHHcCCcc-eeecCcchhhhhHHHHHHHHHHhCCCEEE-ECCcEEEEecccCCCCCcee
Confidence 33448899999999999997 9999999999 899999999999999998 89999999998721 1 23
Q ss_pred ecccCCCCCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHH
Q psy13464 365 LWGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQ 444 (515)
Q Consensus 365 Ls~~~~~~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQ 444 (515)
+.++|+ +..|..+| +++++||..+. .++..|+||++|.|+.|||+. +.
T Consensus 338 ~~KsDG--~~~Y~t~D-ia~~~~k~~~~--------------------------~~d~~IyV~g~~q~~~f~q~~---~~ 385 (607)
T 1f7u_A 338 VQKSDG--TTLYLTRD-VGAAMDRYEKY--------------------------HFDKMIYVIASQQDLHAAQFF---EI 385 (607)
T ss_dssp EECTTS--CCCHHHHH-HHHHHHHHHHH--------------------------CCSEEEEECCGGGHHHHHHHH---HH
T ss_pred EeccCC--CcCCCCCc-HHHHHHHHhhc--------------------------CCCcEEEEEcChHhhHHHHHH---HH
Confidence 555555 55565555 56699997532 356789999999999998873 33
Q ss_pred HhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccc
Q psy13464 445 SCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDT 493 (515)
Q Consensus 445 sea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~ 493 (515)
.+++ |. +++++|+|.++.+++ |||||.||+|+++|+++. ++.++
T Consensus 386 ~~~l-G~-~~~~~~~Hv~fg~v~--kMSkR~G~~v~L~dLlde-~~~~a 429 (607)
T 1f7u_A 386 LKQM-GF-EWAKDLQHVNFGMVQ--GMSTRKGTVVFLDNILEE-TKEKM 429 (607)
T ss_dssp HHHT-TC-GGGGGEEEECCCCEE--SCCGGGTCCCBHHHHHHH-HHHHH
T ss_pred HHHc-CC-CcCcEEEEecccccc--cccCCCCCcccHHHHHHH-HHHHH
Confidence 3333 74 678889999997776 699999999999999999 65543
No 17
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.97 E-value=1.5e-31 Score=288.70 Aligned_cols=175 Identities=13% Similarity=0.080 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC----C----CCcceecc-cCCC-
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS----F----PHYFKLWG-RNEN- 371 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~----~----~~YG~Ls~-~~~~- 371 (515)
|.+.+++||+.||+..++..+++|+|++.+.+++++|+++|+||. +|+..+ + ..+|..++ ++.+
T Consensus 77 ~~~~I~edL~wLGl~wde~~~~qSer~~~~~~~a~~Li~~G~AY~------c~ct~eel~~~r~~~~~~g~~~~~R~~s~ 150 (553)
T 1qtq_A 77 YVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYV------DELTPEQIREYRGTLTQPGKNSPYRDRSV 150 (553)
T ss_dssp HHHHHHHHHHHTTCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEE------ECCCHHHHHHHHCCSSSCCCCCTTTTCCH
T ss_pred HHHHHHHHHHHcCCCCCCCCeehcccHHHHHHHHHHHHHCCCcee------cCCCHHHHHHHhcccccCCCCCccccCch
Confidence 789999999999999988999999999999999999999999996 555443 1 13455441 2210
Q ss_pred -------------------------CCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceE
Q psy13464 372 -------------------------ITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDL 426 (515)
Q Consensus 372 -------------------------~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DI 426 (515)
+.....++++.||+|||..+++++.|.++| .|+|+||+.|+ +|.
T Consensus 151 ee~~~~fe~m~~G~~~~g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w-~g~PtY~la~v----------vDD 219 (553)
T 1qtq_A 151 EENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKW-CIYPMYDFTHC----------ISD 219 (553)
T ss_dssp HHHHHHHHHHHTTCSCTTSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHH
T ss_pred hhhHhHHHHHhCCCccCCceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCC-ccccccccccE----------EEe
Confidence 112245678899999999999999999999 79999997765 899
Q ss_pred eeecccccC---CccchhHHHH---hhhcCCCCcccEEEEeeeeeeCCCcccccccc---------------eecccccc
Q psy13464 427 HTGGIDLKF---PHHENEEAQS---CAFHNQSQWVNYWLHTGHLRGTDGTRRLRAAR---------------FITNLSGS 485 (515)
Q Consensus 427 H~GG~DL~F---PHHENEiAQs---ea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gn---------------fit~~~li 485 (515)
|.+|++|++ +||+|+++|+ +|+ |....+++| |++||+++|+|||||+|| +.|+.++.
T Consensus 220 h~~GITHviRg~e~~~n~~~q~~l~~al-g~~~~P~~~-~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr 297 (553)
T 1qtq_A 220 ALEGITHSLCTLEFQDNRRLYDWVLDNI-TIPVHPRQY-EFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLR 297 (553)
T ss_dssp HHTTCSEEEEEGGGTTTHHHHHHHHHTS-CCSCCCEEE-EECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHH
T ss_pred ccCCcceEeeccchhhhHHHHHHHHHHc-CCCCCCCeE-EEEeecCCCccccccccccccccCcccCCCCcchhhHHHHH
Confidence 999999999 9999999999 565 643257889 999999999999999997 88999999
Q ss_pred ccccCccccC
Q psy13464 486 TIGYTRDTCA 495 (515)
Q Consensus 486 ~~~y~~D~~~ 495 (515)
++||..++.+
T Consensus 298 ~rGy~PeAir 307 (553)
T 1qtq_A 298 RRGYTAASIR 307 (553)
T ss_dssp HHTCCHHHHH
T ss_pred HCCCCHHHHH
Confidence 9999988544
No 18
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.96 E-value=6.5e-32 Score=291.48 Aligned_cols=174 Identities=15% Similarity=0.088 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC----CCCcceeccc-CCC-----
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS----FPHYFKLWGR-NEN----- 371 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~----~~~YG~Ls~~-~~~----- 371 (515)
|.+.|++||+.||+.. |..+++|+|++.+++++++|+++|+||. +|+..+ +..+|..+.. +.+
T Consensus 147 ~~~~I~edL~wLGl~w-d~~~~qSdr~~~y~~~~~~Li~~G~AY~------c~cs~eei~~~r~~g~~~~cR~~s~ee~l 219 (553)
T 3aii_A 147 AYDMIPADLEWLGVEW-DETVIQSDRMETYYEYTEKLIERGGAYV------CTCRPEEFRELKNRGEACHCRSLGFRENL 219 (553)
T ss_dssp HHHHHHHHHHHHTCCC-SEEEEGGGGHHHHHHHHHHHHHTTSEEE------ECSCHHHHHHHHHTTCCCGGGGCCHHHHH
T ss_pred HHHHHHHHHHHcCCCC-CCCcccccCHHHHHHHHHHHHHcCCcee------CCCCHHHHHHHhhcCCCCccccCCHHHHH
Confidence 7899999999999997 8899999999999999999999999996 565544 3334444310 110
Q ss_pred -----------------C--CccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeeccc
Q psy13464 372 -----------------I--TQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGID 432 (515)
Q Consensus 372 -----------------~--t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~D 432 (515)
+ .....+.++.||+|||...+++|.|...|. |+|+||++| .+|.|.+|++
T Consensus 220 ~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~-g~PtYhfa~----------~vDD~~~GIT 288 (553)
T 3aii_A 220 QRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYR-VYPMMNFSV----------AVDDHLLGVT 288 (553)
T ss_dssp HHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBTTTBTSCC-EEECHHHHH----------HHHHHHTTCC
T ss_pred HHHHHHhcCCcCceEEEEEcccccCCCCCCCcEEEEecCCCCCccCCCce-eeeeeeeee----------eeeeccCCCc
Confidence 0 111224578999999988888887555554 799999999 5899999999
Q ss_pred ccCC---ccchhHHHH--hhhcCCCCcccEEEEeeeeeeCCCcccccccc---------------eeccccccccccCcc
Q psy13464 433 LKFP---HHENEEAQS--CAFHNQSQWVNYWLHTGHLRGTDGTRRLRAAR---------------FITNLSGSTIGYTRD 492 (515)
Q Consensus 433 L~FP---HHENEiAQs--ea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gn---------------fit~~~li~~~y~~D 492 (515)
|+++ ||+|+++|. .+++|. +.++|| |.++|+++|+|||||+|| +.|+.++.++||+.+
T Consensus 289 hviRG~D~~~nt~~Q~~l~~alG~-~~P~y~-H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~Pe 366 (553)
T 3aii_A 289 HVLRGKDHLANREKQEYLYRHLGW-EPPEFI-HYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPE 366 (553)
T ss_dssp EEEC-----CHHHHHHHHHHHHTC-CCCEEE-CCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHH
T ss_pred eEeccHhhhhCHHHHHHHHHHcCC-CCCeEE-EeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHH
Confidence 9999 999999999 466674 578888 999999999999999998 889999999999987
Q ss_pred ccC
Q psy13464 493 TCA 495 (515)
Q Consensus 493 ~~~ 495 (515)
+.+
T Consensus 367 aIr 369 (553)
T 3aii_A 367 AIR 369 (553)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 19
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.96 E-value=2.2e-31 Score=298.22 Aligned_cols=174 Identities=13% Similarity=0.092 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC--------CCCcceecc-cCCC-
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS--------FPHYFKLWG-RNEN- 371 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~--------~~~YG~Ls~-~~~~- 371 (515)
|.+.|++||+.||+..++..+++|+|++.+++++++|+++|+||. +|+..+ ...+|..++ ++++
T Consensus 117 ~~~~IledL~wLGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~------c~ct~eel~~~r~~~~~~G~~s~~R~ls~ 190 (851)
T 2hz7_A 117 YVDSIADDLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYV------ESVSPEELSRLRGNATTPGTPSPYRDRSV 190 (851)
T ss_dssp HHHHHHHHHHHHTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEE------ECSCHHHHHHHHCBTTBCCCCCTTTTCCH
T ss_pred HHHHHHHHHHHcCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEe------ecCCHHHHHHHhcchhccCCCcccccCCH
Confidence 889999999999999888999999999999999999999999996 555443 122455542 1110
Q ss_pred -------------------------CCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceE
Q psy13464 372 -------------------------ITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDL 426 (515)
Q Consensus 372 -------------------------~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DI 426 (515)
+.....++++.||+|||...++++.|.+|| .|+|+||++|+ +|.
T Consensus 191 ee~l~~fe~m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w-~g~PtYhfA~v----------VDD 259 (851)
T 2hz7_A 191 EENLDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEW-HIYPAYDFEHP----------LQD 259 (851)
T ss_dssp HHHHHHHHHHHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHH
T ss_pred HHHhhHHHHHhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCC-ccccccceeeE----------eee
Confidence 112245678899999999999999999999 89999999998 799
Q ss_pred eeecccccCC---ccchhHHHH---hhhcCCCCc-ccEEEEeeeeeeCCCcccccccc---------------eeccccc
Q psy13464 427 HTGGIDLKFP---HHENEEAQS---CAFHNQSQW-VNYWLHTGHLRGTDGTRRLRAAR---------------FITNLSG 484 (515)
Q Consensus 427 H~GG~DL~FP---HHENEiAQs---ea~~g~~~~-a~yWlH~G~v~v~G~KMSks~Gn---------------fit~~~l 484 (515)
|.+|++|+++ ||+|+++|. +|+ |. +. +++| |++||.++|.|||||+|| +.|+.++
T Consensus 260 ~~~GITHViRG~D~~~n~~~q~~l~~al-G~-~~~P~~~-~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~l 336 (851)
T 2hz7_A 260 AIEGVTHSMCSLEFVDNRAIYDWLMEKL-NF-DPRPHQY-EFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQ 336 (851)
T ss_dssp HHHTCSEEEEEGGGTTTHHHHHHHHHHT-TC-SSCCEEE-EECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHH
T ss_pred ccCCcceeecchhhhhChHHHHHHHHHc-CC-CCCCCce-EEEEecCCCccccccccccccccCcccCCCCcchhHHHHH
Confidence 9999999999 999999998 665 63 44 6788 889999999999999987 7789999
Q ss_pred cccccCccccC
Q psy13464 485 STIGYTRDTCA 495 (515)
Q Consensus 485 i~~~y~~D~~~ 495 (515)
.++||..++.+
T Consensus 337 r~rGy~PeAIr 347 (851)
T 2hz7_A 337 RRLGVTPEAVR 347 (851)
T ss_dssp HHHTCCHHHHH
T ss_pred HHcCCCHHHHH
Confidence 99999988544
No 20
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.93 E-value=4.4e-27 Score=237.40 Aligned_cols=165 Identities=14% Similarity=0.068 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeee--------cCCcEEEeccCC-CCcceecccCCCC
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIG--------SDHSVYFDVDSF-PHYFKLWGRNENI 372 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~--------kdGsVYFDv~~~-~~YG~Ls~~~~~~ 372 (515)
|.+.+++||+.|||..+...++.|++++.+++++++|+++|+||.- ..|.+|+.+-+. +.||+++..-...
T Consensus 56 ~~~~I~~dL~~LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~ 135 (298)
T 1nzj_A 56 AAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQ 135 (298)
T ss_dssp HHHHHHHHHHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEec
Confidence 7799999999999998556899999999999999999999999972 135688887775 5666544111100
Q ss_pred C--------------ccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCcc
Q psy13464 373 T--------------QHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHH 438 (515)
Q Consensus 373 t--------------~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHH 438 (515)
+ ....+++..||+|||. .|+|+||++|++ .....|.+.+|| |.||+
T Consensus 136 ~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R~-------------dG~PtY~la~vv-dD~~~giThvIr--G~D~l---- 195 (298)
T 1nzj_A 136 QHPVTQFTDQLRGIIHADEKLAREDFIIHRR-------------DGLFAYNLAVVV-DDHFQGVTEIVR--GADLI---- 195 (298)
T ss_dssp SSCCCEEEETTTEEEECCHHHHHSCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEEE--EGGGH----
T ss_pred CCcccceehhhCcccccCcccCCCCEEEECC-------------CCCEeeeeeeee-EHHhcCCCEEEe--Ccccc----
Confidence 0 0112357789999995 589999999999 788999999999 89975
Q ss_pred chhHHHHh--hhcCCCCcccEEEEeeee-eeCCCcccccccceecccccccccc
Q psy13464 439 ENEEAQSC--AFHNQSQWVNYWLHTGHL-RGTDGTRRLRAARFITNLSGSTIGY 489 (515)
Q Consensus 439 ENEiAQse--a~~g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~li~~~y 489 (515)
+|+.+|.. .++|. +.++| +|.++| ..+|+|||||.||+ +++++-..|+
T Consensus 196 ~~t~~q~~l~~alG~-~~p~~-~H~pll~~~~g~KLSKR~g~~-~v~~~~~~~~ 246 (298)
T 1nzj_A 196 EPTVRQISLYQLFGW-KVPDY-IHLPLALNPQGAKLSKQNHAP-ALPKGDPRPV 246 (298)
T ss_dssp HHHHHHHHHHHHHTC-CCCEE-EEECBCCC--------------CCCSSCCHHH
T ss_pred ccHHHHHHHHHHcCC-CCCeE-EEeeeeECCCCCcccccCCcc-ChhcCCccHH
Confidence 99999998 56674 55666 799998 89999999999998 5555544444
No 21
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.92 E-value=5e-26 Score=254.66 Aligned_cols=72 Identities=13% Similarity=0.047 Sum_probs=67.9
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
+.|||+||.|++||||+|+++|+.++++..+++++|+|+|||+++|+|||||+||+|+|++++++ ||+|+.|
T Consensus 603 p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~-yGaDalR 674 (810)
T 1wkb_A 603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEE-NGADVVR 674 (810)
T ss_dssp SCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHH-HCHHHHH
T ss_pred CceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHH-cChHHHH
Confidence 68999999999999999999999999875578899999999999999999999999999999999 9999765
No 22
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.92 E-value=8.2e-25 Score=247.22 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=65.6
Q ss_pred CCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeee-eCCCcccccccceeccccccccccCccccC
Q psy13464 422 GQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR-GTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 422 ~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~-v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
.+.|+|++|.|++|+|+.+.++++.+++|..||.++|+| |+|. .+|+|||||+||+|+|.++++. ||+|+.|
T Consensus 480 ~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~h-G~vld~~G~KMSKSlGNvIdP~dli~~-yGaDalR 552 (862)
T 1gax_A 480 YPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLH-GLVLDEKGQKMSKSKGNVIDPLEMVER-YGADALR 552 (862)
T ss_dssp CSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEE-CCEECTTSCBCCTTTTCCCCHHHHHHH-HCHHHHH
T ss_pred CCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEe-eeEEcCCCCCccccCCCCCCHHHHHHH-cChHHHH
Confidence 357999999999999999999999999987788899999 5555 8999999999999999999999 9999765
No 23
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.92 E-value=4.4e-26 Score=243.88 Aligned_cols=165 Identities=19% Similarity=0.135 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEecc-----------------CCCC-cc
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVD-----------------SFPH-YF 363 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~-----------------~~~~-YG 363 (515)
|++.++++|+.|||..+.-.++.|++++.+++++++|+++|+||. +|++. .++. |.
T Consensus 52 ~~~~i~~dL~wLGl~wde~~~~QS~r~~~y~~~~~~Li~~G~AY~------c~ct~~el~~~r~~~~~~g~~~~y~~~cr 125 (492)
T 2cfo_A 52 YTENILEGLQWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYY------CYCTPEELEALRAEQKAKGQAPRYDNRHR 125 (492)
T ss_dssp HHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEE------ECCCHHHHHHHHHHHHHHTCCSSCCCTTT
T ss_pred HHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHHHHHHHCCCceE------ecCCHHHHHHHHHHHHhcCCCCCCCcccc
Confidence 789999999999999755589999999999999999999999996 56554 2332 44
Q ss_pred eecccC-------C-------CCCc--------------cCcccCc-cCccccccccCCCCcccCCCCCCCCCcccccch
Q psy13464 364 KLWGRN-------E-------NITQ--------------HAVKRSP-FDFALWKSAKPGEPWYESAWGKGRPGWHIECSA 414 (515)
Q Consensus 364 ~Ls~~~-------~-------~~t~--------------~~~Kr~~-~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSA 414 (515)
.|+... + .+.. ...+++. .||+|||..+ +| |.|+|+||++|+
T Consensus 126 ~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~-------~p-~~G~PtY~la~v- 196 (492)
T 2cfo_A 126 HLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAP-------RG-EIGYPLYNLVVV- 196 (492)
T ss_dssp TCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCC-------TT-SCCCBCHHHHHH-
T ss_pred cCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecceeeeeecccccCCCeEEEEecC-------CC-CCCceeehhhhh-
Confidence 444320 1 0110 1245677 8999999753 56 799999999998
Q ss_pred hhhhhcCCCceEeeecccccCC---ccchhHHHHh--hhcCCCCcccEEEEeee-eeeCCCcccccccceeccccccccc
Q psy13464 415 MASHFFGGQVDLHTGGIDLKFP---HHENEEAQSC--AFHNQSQWVNYWLHTGH-LRGTDGTRRLRAARFITNLSGSTIG 488 (515)
Q Consensus 415 M~~~~lG~~~DIH~GG~DL~FP---HHENEiAQse--a~~g~~~~a~yWlH~G~-v~v~G~KMSks~Gnfit~~~li~~~ 488 (515)
+|.|.+|++++++ |++|...|.. .++|. +.+ .|+|.++ +..+|+|||||.||+ ++.++.+.|
T Consensus 197 ---------vDD~~~gIthviRG~D~~~~t~~q~~l~~alg~-~~P-~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G 264 (492)
T 2cfo_A 197 ---------VDDIAMGITDVIRGEDHIGNTPKQILLYEALGA-TPP-NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMG 264 (492)
T ss_dssp ---------HHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTC-CCC-EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTT
T ss_pred ---------hhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCC-CCc-eEEEeeeEECCCCCEecccCCcc-cHHHHHHCC
Confidence 8999999999999 9999999997 45574 344 7999999 689999999999997 899999999
Q ss_pred cCccc
Q psy13464 489 YTRDT 493 (515)
Q Consensus 489 y~~D~ 493 (515)
|..++
T Consensus 265 ~~pea 269 (492)
T 2cfo_A 265 YLAPA 269 (492)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 98875
No 24
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.90 E-value=4.8e-24 Score=239.41 Aligned_cols=72 Identities=11% Similarity=0.040 Sum_probs=65.9
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
+.|+|++|.|++|+|+.+.++++.+++|..++.++|+|...+..+|+|||||+||+|+|.++++. ||+|+.|
T Consensus 544 P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~-yGaDalR 615 (821)
T 1ile_A 544 PADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK-FGADALR 615 (821)
T ss_dssp SBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTT-TCHHHHH
T ss_pred CcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHH-hCHHHHH
Confidence 57999999999999999999999999887788899999555567999999999999999999999 9999765
No 25
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.90 E-value=1.2e-23 Score=240.11 Aligned_cols=73 Identities=12% Similarity=0.029 Sum_probs=68.5
Q ss_pred CCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeeeCCCcccccccceeccccccccccCccccC
Q psy13464 422 GQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 422 ~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
.+.|+|+||.|++||||.++++|+.|+++..++++.|+|+|||..+|+|||||+||+|+|.+++++ ||+|+.|
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~-yGaDalR 674 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEE-NGADVVR 674 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHT-TCHHHHH
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHH-hChHHHH
Confidence 368999999999999999999999999886678899999999999999999999999999999999 9999765
No 26
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.87 E-value=3.6e-22 Score=227.00 Aligned_cols=72 Identities=14% Similarity=-0.002 Sum_probs=66.3
Q ss_pred CCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeeee-CCCcccccccceeccccccccccCccccC
Q psy13464 422 GQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRG-TDGTRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 422 ~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~v-~G~KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
.+.|+|.+|.|+.+.|....++++.+++|..|+.++|+| |+|.. +|+|||||+||+|+|.++++. ||+|+.|
T Consensus 547 ~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~h-G~V~d~~G~KMSKSlGNvV~P~dvi~~-yGaDalR 619 (917)
T 1ffy_A 547 FPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSH-GFVMDGEGKKMSKSLGNVIVPDQVVKQ-KGADIAR 619 (917)
T ss_dssp SSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSCCCCSSSSCCCCHHHHHHH-TCHHHHH
T ss_pred CCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEe-eeEEcCCCcCcccccCCcCChHHHHHh-CCHHHHH
Confidence 357999999999999999999999999887777889999 99996 899999999999999999999 9999765
No 27
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.86 E-value=3e-22 Score=226.72 Aligned_cols=61 Identities=16% Similarity=0.058 Sum_probs=53.8
Q ss_pred CceeEEEc-C-CccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhh
Q psy13464 51 NHLKWYAC-G-PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSL 112 (515)
Q Consensus 51 ~~v~~y~c-g-ptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l 112 (515)
++-+.|+| | |++++.+||||+|+++..|+++||+| +.||+|.+++|.|++|++|..+|++.
T Consensus 31 ~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~r-m~G~~V~~~~G~D~~Glpie~~a~k~ 93 (878)
T 2v0c_A 31 GRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRR-MQGYEVLHPMGWDAFGLPAENAALKF 93 (878)
T ss_dssp ---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHH-HHTCEEECCCCBCCSSHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHH-hcCCceEeecccCcccHHHHHHHHHc
Confidence 44567777 5 99999999999999999999999999 99999999999999999999888663
No 28
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.85 E-value=1.3e-21 Score=221.63 Aligned_cols=61 Identities=16% Similarity=0.083 Sum_probs=55.3
Q ss_pred CceeEEEc--CCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcchHHHHHHHhh
Q psy13464 51 NHLKWYAC--GPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSL 112 (515)
Q Consensus 51 ~~v~~y~c--gptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiDDKIi~~A~~l 112 (515)
++-++|+| .|++++.+||||+|+|+..|+++||+| +.||+|.+++|+++++.+|.++|++.
T Consensus 51 ~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~r-m~G~~V~~~~G~D~~Glpie~~a~~~ 113 (880)
T 4arc_A 51 SKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQR-MLGKNVLQPIGWDAFGLPAEGAAVKN 113 (880)
T ss_dssp TSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHH-HTTCEEECCCEECCCSTHHHHHHHHT
T ss_pred CCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHH-HcCCceEEecCccccCcHHHHHHHHc
Confidence 45577777 689999999999999999999999999 99999999999999999999887654
No 29
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.84 E-value=2.2e-20 Score=198.58 Aligned_cols=156 Identities=10% Similarity=0.015 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCCC--CcceecccCCCCCccCccc
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP--HYFKLWGRNENITQHAVKR 379 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~~--~YG~Ls~~~~~~t~~~~Kr 379 (515)
..+.|.+++++|||.+ |.+..+|...+.+.+.++.|.++|++|+ ++|.++++++++. ..-.|.++|+ +..|..+
T Consensus 147 ~l~~~~~~~~~l~V~f-D~~~~Ess~~~~~~~vv~~L~~~g~~~e-~dGa~~~~~~~~g~~~~~vl~ksDG--~~~Y~t~ 222 (464)
T 3fnr_A 147 MLVLIKQNLEQAKIKI-DSYVSERSYYDALNATLESLKEHKGIYE-QEGKIWLASSQKGDEKDRVIIREDG--RGTYLAA 222 (464)
T ss_dssp HHHHHHHHHHHTTCCC-SCEEEGGGGSTTHHHHHHHHHHTTCEEE-ETTEEEECGGGGTCSSCEEEECTTS--CBCHHHH
T ss_pred HHHHHHHHHHHhCCCc-eeecCHHHHHHHHHHHHHHHHHCCCEEE-eCCeEEEEecccCCCCceEEEeCCC--ceehhhH
Confidence 5689999999999998 9998887665689999999999999998 8999999998753 2356778888 7777777
Q ss_pred CccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccE-E
Q psy13464 380 SPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNY-W 458 (515)
Q Consensus 380 ~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~y-W 458 (515)
| +..++||... |.+-.|.+.|.|+.- |..--.+..+ +.|. +++++ +
T Consensus 223 D-iA~~~~r~~~-----------------------------~~d~~Iyv~G~dq~~-~f~~l~~~l~-~lG~-~~~~~~h 269 (464)
T 3fnr_A 223 D-IVYHKDKMSR-----------------------------GYGKCINIWGADHHG-YIPRMKAAME-FLGF-DSNNLEI 269 (464)
T ss_dssp H-HHHHHHHHTS-----------------------------SCSEEEEEEEGGGGG-GHHHHHHHHH-TTTC-CGGGEEE
T ss_pred H-HHHHHHHHHc-----------------------------CCCeEEEEecCcHHH-HHHHHHHHHH-HcCC-CccceEE
Confidence 7 7888888641 234458889999873 3322222233 3475 44675 8
Q ss_pred EEeeeeee--CCC--cccccccceeccccccccccCccccC
Q psy13464 459 LHTGHLRG--TDG--TRRLRAARFITNLSGSTIGYTRDTCA 495 (515)
Q Consensus 459 lH~G~v~v--~G~--KMSks~Gnfit~~~li~~~y~~D~~~ 495 (515)
+++|+|++ +|+ |||||+||+|+++++++. ||+|+.|
T Consensus 270 ~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~-~g~dalR 309 (464)
T 3fnr_A 270 ILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDE-IGSDALR 309 (464)
T ss_dssp EEECCEEEEETTEECCC---CCSSCBHHHHHHH-HCHHHHH
T ss_pred EEeeeEEecCCCcccCCcCcCCCCCCHHHHHhh-ccHHHHH
Confidence 89999987 775 999999999999999999 9999765
No 30
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.57 E-value=7e-15 Score=157.04 Aligned_cols=164 Identities=19% Similarity=0.247 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHcCCCCCccc---------ccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccCC-------------
Q psy13464 302 YELEYFESMEKFGVLPPTRA---------TRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSF------------- 359 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~---------pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~~------------- 359 (515)
+.+.+.++|+.||+.. |.. .+.|++.+.+++++++|+++|.||.- |+..+.
T Consensus 64 ~~~~I~~~l~wlGl~~-de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c------~ct~eel~~~r~~~~~~g~ 136 (481)
T 2o5r_A 64 YEEKLMESLRWLGLLW-DEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYV------YAYPEEIEEMREKLLSEGK 136 (481)
T ss_dssp HHHHHHHHHHHHTCCC-SBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEEE------CCCSTTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCC-CCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeEe------cCCHHHHHHHHHHHHhcCC
Confidence 5677899999999985 654 37899999999999999999999961 222210
Q ss_pred -CCc-ceecccCCC-------------------CC-------------ccCcccCccCccccccccCCCCcccCCCCCCC
Q psy13464 360 -PHY-FKLWGRNEN-------------------IT-------------QHAVKRSPFDFALWKSAKPGEPWYESAWGKGR 405 (515)
Q Consensus 360 -~~Y-G~Ls~~~~~-------------------~t-------------~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GR 405 (515)
+.| |.+|.+++. .+ ......+..||+|||. .|.
T Consensus 137 ~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~Rs-------------DG~ 203 (481)
T 2o5r_A 137 APHYSQEMFEKFDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRS-------------NGL 203 (481)
T ss_dssp CCCBCGGGGTTTCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTEEEEECTTSSCBEEEECT-------------TSC
T ss_pred CCCCCCchhhhcCCHHHHHHHHhcCCcceEEEEcCCCceEEEecccceeEeccccCCCeEEEcc-------------CCC
Confidence 011 122222210 00 0001223357777775 389
Q ss_pred CCcccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeee-eeeCCCcccccccceeccccc
Q psy13464 406 PGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGH-LRGTDGTRRLRAARFITNLSG 484 (515)
Q Consensus 406 PGWHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~-v~v~G~KMSks~Gnfit~~~l 484 (515)
|.||+.|. +-....|-+-.| .|.||. +|...-++..+++ |. +.+ .|.|..+ +..+|+|||||.|++ +++++
T Consensus 204 ptY~~a~v-vDD~~~githvi--rG~D~~-~~t~~q~~l~~aL-G~-~~p-~~~H~plil~~~G~KLSKR~g~~-~l~~~ 275 (481)
T 2o5r_A 204 PTYNFACV-VDDMLMEITHVI--RGDDHL-SNTLRQLALYEAF-EK-APP-VFAHVSTILGPDGKKLSKRHGAT-SVEAF 275 (481)
T ss_dssp BCHHHHHH-HHHHHTTCSEEE--EEGGGH-HHHHHHHHHHHHT-TC-CCC-EEEEECCEECTTSSBCCGGGSCC-BHHHH
T ss_pred cchhhHHH-HHHHhCCCCeEE--EChhHH-HhHHHHHHHHHHc-CC-CCC-eEEEEeeEECCCCCcccCcCCcc-cHHHH
Confidence 99999988 334455555544 899966 5555555556665 64 334 4889887 577899999999999 99999
Q ss_pred cccccCccc
Q psy13464 485 STIGYTRDT 493 (515)
Q Consensus 485 i~~~y~~D~ 493 (515)
.+.||..++
T Consensus 276 ~~~G~~pea 284 (481)
T 2o5r_A 276 RDMGYLPEA 284 (481)
T ss_dssp HHHTCCHHH
T ss_pred HHCCCCHHH
Confidence 999998664
No 31
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.45 E-value=1.6e-13 Score=149.88 Aligned_cols=164 Identities=18% Similarity=0.144 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHcCCCCCcccc---------cccccHHHHHHHHHHHHHCCCeeee----------------------cCC
Q psy13464 302 YELEYFESMEKFGVLPPTRAT---------RVSEFIPHIQSFIQTLLDTKQAYIG----------------------SDH 350 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~p---------RaTehI~~iie~I~kLidnG~AYe~----------------------kdG 350 (515)
+.+.+.++|+.|||.. |.-| +.|++.+...+++++|+++|+||.- ++|
T Consensus 180 ~~~~I~~dL~wlGl~~-D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g 258 (592)
T 3al0_C 180 YEQQILESLRWCGLDW-DEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKG 258 (592)
T ss_dssp HHHHHHHHHHHTTCCC-SBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTT
T ss_pred HHHHHHHHHHHcCCCC-CCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcC
Confidence 6789999999999995 8754 9999999999999999999999961 112
Q ss_pred ---cEEEeccCCCCcceecccCC-CCCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceE
Q psy13464 351 ---SVYFDVDSFPHYFKLWGRNE-NITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDL 426 (515)
Q Consensus 351 ---sVYFDv~~~~~YG~Ls~~~~-~~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DI 426 (515)
.+-|.++. |.+.=.|+ .-.......+..||+|||.. |.|.||+.|.. -....|-+-.|
T Consensus 259 ~~~~iR~k~~~----~~~~~~D~v~G~~~~~~~~~~D~Vl~R~d-------------g~ptY~~a~vv-DD~~~githvi 320 (592)
T 3al0_C 259 HPVTIKFKVLP----GKTSFEDLLKGYMEFDNSTLEDFIIMKSN-------------GFPTYNFAVVV-DDHLMRISHVF 320 (592)
T ss_dssp CCEEEEECCCS----SCCEECCTTTCSEECCSSSSCCEEEECTT-------------SCCCHHHHHHH-HHHHTTCSBCC
T ss_pred CCceEEEECCC----CCceeeecccceeeeccccCCCeEEEcCC-------------CCeehhhHHHH-HHHhcCCCeEE
Confidence 23333320 00000000 00011122345799999853 89999999874 44566766666
Q ss_pred eeecccccCCccchhHHHHhhh--cCCCCcccEEEEeeee-eeCCCcccccccceeccccccccccCccc
Q psy13464 427 HTGGIDLKFPHHENEEAQSCAF--HNQSQWVNYWLHTGHL-RGTDGTRRLRAARFITNLSGSTIGYTRDT 493 (515)
Q Consensus 427 H~GG~DL~FPHHENEiAQsea~--~g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~li~~~y~~D~ 493 (515)
. |.|| +.|-..|...+ +|.. .+. |.|...| ..+|.|||||.|+ +++.++.+.||..++
T Consensus 321 r--G~D~----~~~t~~q~~l~~alg~~-~P~-~~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~pea 381 (592)
T 3al0_C 321 R--GEDH----LSNTPKQLMIYEAFGWE-APV-FMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRA 381 (592)
T ss_dssp E--EGGG----GGGHHHHHHHHTTTTCC-CCB-CCEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHH
T ss_pred E--chhh----HhCHHHHHHHHHHhCCC-CCe-EEEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHH
Confidence 5 7775 66776666433 3643 343 5677765 7789999999999 699999999998875
No 32
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.42 E-value=2.9e-13 Score=144.26 Aligned_cols=161 Identities=17% Similarity=0.172 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHcCCCCCcccc---------cccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC-----------CC-
Q psy13464 302 YELEYFESMEKFGVLPPTRAT---------RVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS-----------FP- 360 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~p---------RaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~-----------~~- 360 (515)
|.+.+.++|+.||+.. |.-| +.|++.+...+++++|+++|+||. -|+..+ ++
T Consensus 52 ~~~~I~~dl~wlGl~w-d~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~------c~ct~~el~~~r~~~~~y~~ 124 (468)
T 1j09_A 52 AEERILAALKWLGLSY-DEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR------AFETPEELEQIRKEKGGYDG 124 (468)
T ss_dssp HHHHHHHHHHHTTCCC-SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE------ECCCHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHcCCCC-CCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEE------cCCCHHHHHHHHHHcCCCCC
Confidence 7789999999999995 7764 999999999999999999999996 122111 11
Q ss_pred CcceecccC-------C-------CCC--------------ccCcccCccCccccccccCCCCcccCCCCCCCCCccccc
Q psy13464 361 HYFKLWGRN-------E-------NIT--------------QHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIEC 412 (515)
Q Consensus 361 ~YG~Ls~~~-------~-------~~t--------------~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiEC 412 (515)
.+..|+... + .++ ......+..||+|||.. |.|.||+.|
T Consensus 125 ~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R~d-------------g~PtY~~a~ 191 (468)
T 1j09_A 125 RARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSD-------------GYPTYHLAN 191 (468)
T ss_dssp GGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECTT-------------SCBCHHHHH
T ss_pred cccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEeccceeEeecccCCCCeEEEecC-------------CCeeehhHH
Confidence 011111100 0 000 11122345789999863 899999998
Q ss_pred chhhhhhcCCCceEeeecccccCCccchhHHHH---hhhcCCCCcccEEEEeeee-eeCCCcccccccceeccccccccc
Q psy13464 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQS---CAFHNQSQWVNYWLHTGHL-RGTDGTRRLRAARFITNLSGSTIG 488 (515)
Q Consensus 413 SAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQs---ea~~g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~li~~~ 488 (515)
.. -....|-+..|. |.|| +.|...|. +++ |.. .+ .|.|...+ ..+|.|||||.|++ ++.++.+.|
T Consensus 192 vv-DD~~~githvir--G~D~----~~~t~~q~~l~~al-g~~-~p-~~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G 260 (468)
T 1j09_A 192 VV-DDHLMGVTDVIR--AEEW----LVSTPIHVLLYRAF-GWE-AP-RFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEG 260 (468)
T ss_dssp HH-HHHHTTCCEEEE--EGGG----GGGHHHHHHHHHHH-TCC-CC-EEEEECCCBCTTSCBCCTTTSCC-BHHHHHHTT
T ss_pred HH-HHHHCCCCeEEE--Chhh----hhhHHHHHHHHHHc-CCC-CC-eEEEeeeeeCCCCCccccccchh-hHHHHHHCC
Confidence 85 555677777666 7775 66666665 443 643 34 45787774 78899999999999 899999999
Q ss_pred cCccc
Q psy13464 489 YTRDT 493 (515)
Q Consensus 489 y~~D~ 493 (515)
|..++
T Consensus 261 ~~pea 265 (468)
T 1j09_A 261 FLPEA 265 (468)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 98875
No 33
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.40 E-value=6.8e-13 Score=142.09 Aligned_cols=164 Identities=18% Similarity=0.146 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHcCCCCCcccc---------cccccHHHHHHHHHHHHHCCCeeee----------------------cCC
Q psy13464 302 YELEYFESMEKFGVLPPTRAT---------RVSEFIPHIQSFIQTLLDTKQAYIG----------------------SDH 350 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~p---------RaTehI~~iie~I~kLidnG~AYe~----------------------kdG 350 (515)
+.+.+.++|+.|||.. |.-| +.|++.+...+++++|+++|+||.- ++|
T Consensus 76 ~~~~I~~dL~wlGl~w-De~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G 154 (488)
T 3afh_A 76 YEQQILESLRWCGLDW-DEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKG 154 (488)
T ss_dssp HHHHHHHHHHHTTCCC-SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTT
T ss_pred HHHHHHHHHHHcCCCC-CcCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcC
Confidence 6789999999999995 8764 9999999999999999999999961 001
Q ss_pred ---cEEEeccCCCCcceecccCC-CCCccCcccCccCccccccccCCCCcccCCCCCCCCCcccccchhhhhhcCCCceE
Q psy13464 351 ---SVYFDVDSFPHYFKLWGRNE-NITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDL 426 (515)
Q Consensus 351 ---sVYFDv~~~~~YG~Ls~~~~-~~t~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPGWHiECSAM~~~~lG~~~DI 426 (515)
.+-|.++ -|.+.=.|. .-.......+..||+|||.. |.|.+|+.|.. -....|-+-.|
T Consensus 155 ~~~~iR~k~~----~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~D-------------G~PtY~lA~vV-DD~~mgIThVi 216 (488)
T 3afh_A 155 HPVTIKFKVL----PGKTSFEDLLKGYMEFDNSTLEDFIIMKSN-------------GFPTYNFAVVV-DDHLMRISHVF 216 (488)
T ss_dssp CCEEEEECCC----SSEEEEEETTTEEEEEEGGGSCCEEEECTT-------------SCBCHHHHHHH-HHHHTTCSEEE
T ss_pred CCceEEEECC----CCceeEEeccceeEeecCCCCCCeEEEecC-------------CCeehhhHHHH-HHHhcCCCEEE
Confidence 1222221 000000000 00001112334688998863 89999998885 45566777777
Q ss_pred eeecccccCCccchhHHHHhhh--cCCCCcccEEEEeeee-eeCCCcccccccceeccccccccccCccc
Q psy13464 427 HTGGIDLKFPHHENEEAQSCAF--HNQSQWVNYWLHTGHL-RGTDGTRRLRAARFITNLSGSTIGYTRDT 493 (515)
Q Consensus 427 H~GG~DL~FPHHENEiAQsea~--~g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~li~~~y~~D~ 493 (515)
. |.|| +.|...|...+ +|..+ + .|.|...| ..+|+|||||.|+ +++.++.+.||..++
T Consensus 217 R--G~D~----l~~tp~q~~l~~aLG~~~-P-~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~pea 277 (488)
T 3afh_A 217 R--GEDH----LSNTPKQLMIYEAFGWEA-P-VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRA 277 (488)
T ss_dssp E--EGGG----GGGHHHHHHHHHHHTCCC-C-EEEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHH
T ss_pred E--chhh----hhCHHHHHHHHHHcCCCC-C-eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHH
Confidence 5 7774 77777776432 36433 3 57787776 7789999999999 699999999998875
No 34
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.19 E-value=6.5e-11 Score=126.88 Aligned_cols=176 Identities=10% Similarity=0.059 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC-CCCc-------ceecccCC---
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS-FPHY-------FKLWGRNE--- 370 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~-~~~Y-------G~Ls~~~~--- 370 (515)
|++.+.++|+.|||..+....+.|++++.+++++++|+++|+||. -|+..+ .+.. |.-.+.+.
T Consensus 76 ~~~~i~~dl~wlGl~~d~~~~~qS~r~~~y~~~~~~Li~~G~aY~------C~ct~eel~~~r~~~~~~~~~~~Y~~~cr 149 (490)
T 4g6z_A 76 AVDAILEGMAWLGLDYDEGPYYQMQRMDRYREVLAQMQEKGLVYP------CYMSTEELDALRERQRAAGEKPRYDGTWR 149 (490)
T ss_dssp HHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEE------ECC-------------------CCCCTTC
T ss_pred HHHHHHHHHHHcCCCCCCCCcccccCHHHHHHHHHHHHHCCCEEe------CCCCHHHHHHHHHHHHhcCCCCCCCcccc
Confidence 789999999999999633346999999999999999999999996 233322 1100 10001111
Q ss_pred CCCccC--cccCccCccccccccC--CCCcccC-----------CC-------CCCCCCcccccchhhhhhcCCCceEee
Q psy13464 371 NITQHA--VKRSPFDFALWKSAKP--GEPWYES-----------AW-------GKGRPGWHIECSAMASHFFGGQVDLHT 428 (515)
Q Consensus 371 ~~t~~~--~Kr~~~DFaLWK~~~~--gep~W~S-----------pw-------G~GRPGWHiECSAM~~~~lG~~~DIH~ 428 (515)
+++... .......+ .|....| |+..|+. .. ..|.|..|.-|. .-....|-+-.|-
T Consensus 150 ~~~~~~~~~~~~g~~~-~~R~k~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~v-VDD~~mgIThViR- 226 (490)
T 4g6z_A 150 PEPGKVLPEPPAGVAP-VLRFRNPLTGTVAWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVV-VDDLDMGITHVIR- 226 (490)
T ss_dssp CCTTCCCCCCCTTCCC-EEEECCCCSSEEEEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHH-HHHHHTTCCEEEE-
T ss_pred cCChhhhhhhhcCCCc-eEEEecCCCCcEEEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHH-HHHHhcCCCEEEe-
Confidence 111000 00001112 2333222 2222221 11 247899998554 2334556565555
Q ss_pred ecccccCCccchhHHHHhhh--cCCCCcccEEEEeeee-eeCCCcccccccceeccccccccccCcccc
Q psy13464 429 GGIDLKFPHHENEEAQSCAF--HNQSQWVNYWLHTGHL-RGTDGTRRLRAARFITNLSGSTIGYTRDTC 494 (515)
Q Consensus 429 GG~DL~FPHHENEiAQsea~--~g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~li~~~y~~D~~ 494 (515)
|.|| +.|-.-|...+ +|-.+ + -|.|...| .-+|+|||||.|. +++.++.+.||..++.
T Consensus 227 -G~D~----l~~tprq~~l~~aLG~~~-P-~f~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal 287 (490)
T 4g6z_A 227 -GDDH----VNNTPRQINILRALGGEV-P-VYAHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAV 287 (490)
T ss_dssp -EGGG----GGGHHHHHHHHHHTTCCC-C-EEEEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHH
T ss_pred -cccc----ccChHHHHHHHHHcCCCC-C-eEEEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHH
Confidence 8886 45665565432 36433 3 36666654 4578999999996 7899999999998854
No 35
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.42 E-value=1.6e-06 Score=93.15 Aligned_cols=164 Identities=16% Similarity=0.123 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHcCCCCCcc---------cccccccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC-C------------
Q psy13464 302 YELEYFESMEKFGVLPPTR---------ATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS-F------------ 359 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~---------~pRaTehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~-~------------ 359 (515)
+.+.+.++|+.||+.. |. .-+-|++.+.-.+++++|+++|.||. -|+..+ .
T Consensus 57 ~~~~I~~~L~wlGl~w-Degp~~gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY~------c~ct~eel~~~r~~~~~~~~ 129 (498)
T 2ja2_A 57 SYLALLDALRWLGLDW-DEGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAYH------AFSTPEEVEARHVAAGRNPK 129 (498)
T ss_dssp HHHHHHHHHHHHTCCC-SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE------ECCCHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHcCCCc-CCCcCcCCCCCCeeeecCHHHHHHHHHHHHHcCCeEE------eCCCHHHHHHHHHHHhcCCC
Confidence 7789999999999996 65 56889999999999999999999996 222211 0
Q ss_pred CCcceecccCCC-------------------CC-------------ccCcccCccCccccccccCCCCcccCCCCCCCCC
Q psy13464 360 PHYFKLWGRNEN-------------------IT-------------QHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPG 407 (515)
Q Consensus 360 ~~YG~Ls~~~~~-------------------~t-------------~~~~Kr~~~DFaLWK~~~~gep~W~SpwG~GRPG 407 (515)
+.|-.-.+ +++ ++ ....-.+-.||+|.|. .|.|.
T Consensus 130 ~~Y~~~cr-~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~-------------Dg~pt 195 (498)
T 2ja2_A 130 LGYDNFDR-HLTDAQRAAYLAEGRQPVVRLRMPDDDLAWNDLVRGPVTFAAGSVPDFALTRA-------------SGDPL 195 (498)
T ss_dssp SCCCCGGG-GCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTEEEEECTTCSCCCBSBCT-------------TSCBC
T ss_pred CCCCCccc-cCCHHHHHhhhccCCCceEEEECCCCceEEEecccceEeecccccCcceeEcc-------------CCCcc
Confidence 11211000 000 00 0000011135555553 47788
Q ss_pred cccccchhhhhhcCCCceEeeecccccCCccchhHHHHhhhc----CCCCcccEEEEeeee-eeCCCcccccccceeccc
Q psy13464 408 WHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFH----NQSQWVNYWLHTGHL-RGTDGTRRLRAARFITNL 482 (515)
Q Consensus 408 WHiECSAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~----g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~ 482 (515)
.|.-|.. -....|-+-.| -|.|+.= +..--++..+++. |.. .+ -+.|...| ..+|.|||||.|+ ++++
T Consensus 196 Y~lA~vV-DD~~mgithvi--RG~D~~~-~t~~q~~l~~aL~~~g~g~~-~P-~~~h~plil~~~g~KLSKR~g~-~~l~ 268 (498)
T 2ja2_A 196 YTLVNPC-DDALMKITHVL--RGEDLLP-STPRQLALHQALIRIGVAER-IP-KFAHLPTVLGEGTKKLSKRDPQ-SNLF 268 (498)
T ss_dssp HHHHHHH-HHHHTTCCEEE--EEGGGGG-GHHHHHHHHHHHHHTTSCCC-CC-EEEEECCEECSSSSBCCTTSGG-GBHH
T ss_pred hhhHHHH-HhhhcCCCEEE--EChhhhh-ccHHHHHHHHHHHhhcCCCC-CC-eEEEeeeeECCCCCcccccCCc-ccHH
Confidence 8876553 23345555545 5777542 2221233334431 533 23 35576664 6889999999999 5999
Q ss_pred cccccccCccc
Q psy13464 483 SGSTIGYTRDT 493 (515)
Q Consensus 483 ~li~~~y~~D~ 493 (515)
++.+.||..++
T Consensus 269 ~~r~~G~~peA 279 (498)
T 2ja2_A 269 AHRDRGFIPEG 279 (498)
T ss_dssp HHHHHTCCHHH
T ss_pred HHHhCCCCHHH
Confidence 99999999985
No 36
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.14 E-value=2.4e-05 Score=84.20 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCCCCcccc---------cccccHHHHHHHHHHHHHCCCeee
Q psy13464 302 YELEYFESMEKFGVLPPTRAT---------RVSEFIPHIQSFIQTLLDTKQAYI 346 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~p---------RaTehI~~iie~I~kLidnG~AYe 346 (515)
|++.++++|+.||+.. |.-| +-|++.+.-.+++++|+++|.||.
T Consensus 75 ~~~~I~~~L~wlGl~w-De~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~ 127 (512)
T 4gri_A 75 AENDLYSSLKWLGISF-DEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYY 127 (512)
T ss_dssp HHHHHHHHHHHHTCCC-SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCC-CcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccc
Confidence 7789999999999985 5433 678999999999999999999996
No 37
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=98.02 E-value=8.8e-07 Score=95.32 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=35.5
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcc----------hhHHHhh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDI----------DDKIINK 183 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDi----------ddKii~r 183 (515)
..+||||||+|++.|+++|.++ +.||++.+++|+||+ ||||+++
T Consensus 54 g~~HIGHar~~v~~Dvl~R~lr-~~Gy~V~~v~niTDvGhltG~~DehddKI~~~ 107 (501)
T 3sp1_A 54 NYAHIGNFRTYIFGDLLIKTLR-FLGYKVNYAMNITDIGHLTGDLDDGEDKVAKT 107 (501)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHH-HHTCCEEEEEEEBCSCCC--------------
T ss_pred CCcchhhhHHHHHHHHHHHHHH-HcCCceeEEeeecccccccCCCCCCCcHHHHH
Confidence 4589999999999999999999 899999999999999 8998754
No 38
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=97.93 E-value=2.4e-06 Score=91.12 Aligned_cols=44 Identities=30% Similarity=0.437 Sum_probs=41.2
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
..+||||||+|++.|+++|+++ +.|+++.+++|+||+|+||+.+
T Consensus 37 ~~~HIGHaR~~v~~Dvl~R~lr-~~Gy~V~~v~n~dD~ddKIi~~ 80 (462)
T 3tqo_A 37 DYMHIGHGRSWIIFDMVVRYLR-MRGYEVTFVRNITDIDDKIIKR 80 (462)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHH-HTTCEEEEEECBBCCCHHHHHH
T ss_pred CCCchhhhHHHHHHHHHHHHHH-HcCCceEEecCcCCCCcHHHHH
Confidence 3589999999999999999998 7999999999999999999865
No 39
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=97.87 E-value=3.4e-06 Score=89.54 Aligned_cols=44 Identities=32% Similarity=0.540 Sum_probs=41.0
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
..+||||||+++..|+++|+++ |.|+++.+++|+||+|+||+.+
T Consensus 34 ~~~HiGHar~~v~~D~l~R~lr-~~G~~V~~v~~~tD~d~ki~~~ 77 (461)
T 1li5_A 34 DLCHIGHGRTFVAFDVVARYLR-FLGYKLKYVRNITDIDDKIIKR 77 (461)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHH-HHTCEEEEEECBBCCSHHHHHH
T ss_pred CCCcccccHHHHHHHHHHHHHH-HcCCCEEEeecCCCCcHHHHHH
Confidence 5689999999999999999998 8899999999999999998753
No 40
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=97.34 E-value=4.4e-05 Score=79.73 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=39.7
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
.+||||||++++.|++.|+++. .|+++.+++++||.++||+.+
T Consensus 52 ~~HiGHar~~v~~DvlaR~lr~-~G~~V~~~~~~dd~g~ki~~~ 94 (414)
T 3c8z_A 52 ATHLGHAATYLTFDLVHRLWLD-AGHTVQYVQNVTDVDDPLFER 94 (414)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEEEECCSCHHHHHH
T ss_pred CcCccccHHHHHHHHHHHHHHH-cCCCEEeCCCCCCccHHHHHH
Confidence 4899999999999999999985 799999999999999998753
No 41
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=96.29 E-value=0.001 Score=71.35 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=39.6
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhh
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINK 183 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~r 183 (515)
.+||||||+++..|++.|+++ +.|+++.++++++|.++||+.+
T Consensus 39 ~lHiGH~r~~v~~D~laR~lr-~~G~~V~~~~g~dd~g~ki~~~ 81 (536)
T 4dlp_A 39 KPHIGHAYELIATDAMARFQR-LNGMDVYFLTGTDEHGIKMLQS 81 (536)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-HTTCEEEEEEEECCCSHHHHHH
T ss_pred CcCcchhHHHHHHHHHHHHHH-hcCCcEEEecCcCCcchHHHHH
Confidence 489999999999999999997 7899999999999999988753
No 42
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=96.10 E-value=0.0016 Score=69.34 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=51.9
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHH
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKR 197 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~ 197 (515)
..+|+||||+++..|++.|+++ +.|+++.++++.++.++||+.+|.+.+.++++++.+
T Consensus 25 g~lHiGHa~~~i~~D~l~R~~r-~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~ 82 (524)
T 2x1l_A 25 GVPHIGHAYEYIATDAIARFKR-LDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARR 82 (524)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHH-HTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHH
T ss_pred CCcccchhHHHHHHHHHHHHHH-hcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHH
Confidence 3489999999999999999997 999999999999999999999998888888776543
No 43
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=96.00 E-value=0.0034 Score=63.56 Aligned_cols=65 Identities=23% Similarity=0.130 Sum_probs=45.7
Q ss_pred hhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCCCcccccccceecccc
Q psy13464 415 MASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTDGTRRLRAARFITNLS 483 (515)
Q Consensus 415 M~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~ 483 (515)
|+.+.+-...|+-.||.|+.. |.+--+-..+.. |.. .-+.+|..+| .++|+|||||.||.|.+++
T Consensus 162 qaaD~l~~~~~~v~~G~DQ~~-~~~l~rdla~~~-~~~--~p~~l~~pll~~l~G~KMSKS~~n~I~l~d 227 (323)
T 2cyb_A 162 QALDIAHLGVDLAVGGIDQRK-IHMLARENLPRL-GYS--SPVCLHTPILVGLDGQKMSSSKGNYISVRD 227 (323)
T ss_dssp HHHHHHHTTCSEEEEEGGGHH-HHHHHHHHGGGG-TCC--CCEEEEECCCBCTTSSBCCTTTTCSCBTTC
T ss_pred HHHHHHhcCCCEEEechhhHH-HHHHHHHHHHhc-CCC--CceEEecCcccCCCCCcccCCcCceeCCCC
Confidence 444444457789999999987 665544444444 432 2357888877 7889999999999996554
No 44
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=95.98 E-value=0.0018 Score=68.42 Aligned_cols=43 Identities=16% Similarity=0.270 Sum_probs=38.4
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIIN 182 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ 182 (515)
..+|+||||+++..|++.|+++ +.|+++..+++.++.++||+.
T Consensus 16 g~lHiGH~r~~~~~D~~~R~~r-~~G~~V~~~~g~D~~G~~i~~ 58 (500)
T 2d5b_A 16 AEPHLGHAYTTVVADFLARWHR-LDGYRTFFLTGTDEHGETVYR 58 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHH-HTTCEEEEEEEEECCSHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHH-cCCCceeeecccCCchHHHHH
Confidence 3489999999999999999997 899999999998888887764
No 45
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=95.75 E-value=0.0024 Score=67.49 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=38.6
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIIN 182 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ 182 (515)
..+|+||||+++..|++.|.++ +.|+++.++++.++.++||+.
T Consensus 18 g~lHiGH~~~~~~~D~~~R~~r-~~G~~V~~~~g~D~~G~~i~~ 60 (497)
T 2csx_A 18 DVPHLGHAYTTIAADTIARYYR-LRDYDVFFLTGTDEHGLKIQK 60 (497)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHH-HTTCEEEEEEEEECCSHHHHT
T ss_pred CccchhhHHHHHHHHHHHHHHH-hcCCceeeecccCCCcHHHHH
Confidence 3589999999999999999996 899999999999888888764
No 46
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=95.48 E-value=0.004 Score=67.37 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=39.3
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIIN 182 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ 182 (515)
..+||||||+++..|++.|+++ +.|+++.++++++|.++||+.
T Consensus 39 g~lHiGH~r~~v~~D~laR~~r-~~G~~V~~~~g~dd~G~ki~~ 81 (564)
T 3kfl_A 39 ASPHIGHVYSTLIVDVLGRYHR-VKGEEVFVMTGTDEHGQKVAE 81 (564)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHH-HHTCCEEEEEEEECCSHHHHH
T ss_pred CCCCcchhHHHHHHHHHHHHHH-HcCCcEEEecCcCCCCcHHHH
Confidence 4699999999999999999997 679999999999999998864
No 47
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=95.35 E-value=0.0038 Score=67.19 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=38.7
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHh
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIIN 182 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ 182 (515)
..+|+||||+++..|++.|+++. .|+++.++++.++.++||+.
T Consensus 31 g~lHiGH~r~~v~~D~laR~~r~-~G~~V~~~~g~D~~G~~i~~ 73 (560)
T 3h99_A 31 GSIHLGHMLEHIQADVWVRYQRM-RGHEVNFICADDAHGTPIML 73 (560)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEEEEBCCSHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHH-cCCeEEEeeeecCcCcHHHH
Confidence 35899999999999999999985 69999999999889998864
No 48
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=95.15 E-value=0.0056 Score=65.26 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=33.8
Q ss_pred ccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHh
Q psy13464 138 GSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIIN 182 (515)
Q Consensus 138 ~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ 182 (515)
-..+|||||++++..|++.|..+ +.|+++.+++...+---||++
T Consensus 21 nG~lHiGHa~~~~~~Dii~Ry~r-~~G~~v~~v~G~D~hG~~ie~ 64 (542)
T 3u1f_A 21 NAAPHIGHVYSTLITDVIGRYHR-VKGERVFALTGTDEHGQKVAE 64 (542)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHH-HTTCCEEEEEEEECCSHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHH-hcCCCccccCccCcChHHHHH
Confidence 34689999999999999999886 789999997554322226553
No 49
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=94.65 E-value=0.0037 Score=67.02 Aligned_cols=51 Identities=16% Similarity=0.004 Sum_probs=43.8
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcch--hHH---Hhhhcc--cccch
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDID--DKI---INKANS--LKEDY 191 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDid--dKi---i~ra~~--~~~~~ 191 (515)
.+||||||+++..|.++|+++ +.|+++.++.+++|.| +|| +.+|.. ++.++
T Consensus 33 ~lHIGhaR~al~~D~laR~l~-~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~ 90 (523)
T 1irx_A 33 YVHVGNFRELFTAYIVGHALR-DKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPI 90 (523)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBG
T ss_pred CcccCCcHHHHHHHHHHHHHH-HcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCc
Confidence 489999999999999999998 6899999999999998 888 666643 35555
No 50
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=94.33 E-value=0.012 Score=65.70 Aligned_cols=43 Identities=19% Similarity=0.136 Sum_probs=39.1
Q ss_pred cccccCccch-hhHHHHHHHHHHHHHhhhcccccccCcchhHHHh
Q psy13464 139 SIPTRGHAVC-NVKLDIIRRILEHYFHIHSIVISSVTDIDDKIIN 182 (515)
Q Consensus 139 ~~~~~ghar~-~~~~divrrile~Yfg~~l~~v~niTDiddKii~ 182 (515)
..+|||||++ |+..|++.|..+ +.|+++.++++.++...||+.
T Consensus 15 G~lHiGHa~~~~i~~DiiaRy~r-m~G~~V~~v~G~D~hG~pie~ 58 (722)
T 1rqg_A 15 GPIHAGHLAGAYLPADIFVRYLR-LKGEDVVFICGTDEHGTPISF 58 (722)
T ss_dssp SCCBHHHHHHHTHHHHHHHHHHH-HTTCEEEEEEEEBCCSHHHHH
T ss_pred CchhhchhhccHHHHHHHHHHHH-hcCCceEecceeCCCCHHHHH
Confidence 4589999998 999999999997 899999999999989888864
No 51
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=93.68 E-value=0.023 Score=64.80 Aligned_cols=53 Identities=13% Similarity=-0.053 Sum_probs=46.2
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchH
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYK 192 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~ 192 (515)
..+|+||||+|+..|++.|.++ +.|+++.++++.++...+|+.+|.+.+.+++
T Consensus 46 G~lHiGHa~~~~~~Dvl~Ry~r-m~G~~V~~~~G~D~~Glpie~~a~k~g~~~~ 98 (878)
T 2v0c_A 46 GDLHMGHLKNYTMGDVLARFRR-MQGYEVLHPMGWDAFGLPAENAALKFGVHPK 98 (878)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHH-HHTCEEECCCCBCCSSHHHHHHHHHTTCCHH
T ss_pred CCcchhhhHHHHHHHHHHHHHH-hcCCceEeecccCcccHHHHHHHHHcCCCHH
Confidence 3489999999999999999997 7899999999999999999887765555544
No 52
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=93.44 E-value=0.022 Score=57.90 Aligned_cols=57 Identities=14% Similarity=0.007 Sum_probs=39.4
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCCCcccccccceecccc
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTDGTRRLRAARFITNLS 483 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~ 483 (515)
..||-+||.|+.. |.+.-+=.++-..+ .+ -+-++.-.| .++|+|||||.||.|-+++
T Consensus 191 ~~~v~~gG~DQ~~-~i~l~rdla~r~n~-~~--~~~l~~pll~gldG~KMSKS~~n~I~L~d 248 (322)
T 2yxn_A 191 GVVLCIGGSDQWG-NITSGIDLTRRLHQ-NQ--VFGLTVPLITKADGTKFGKTEGGAVWLDP 248 (322)
T ss_dssp CEEEEEECTTCHH-HHHHHHHHHHHHHC-CC--CEEEECCCCBCTTSCBTTEETTEECBSST
T ss_pred CceEEecCchhHH-HHHHHHHHHHHhCC-CC--ceeeccCccCCCCcccccCCCCCeeeccC
Confidence 5689999999986 77655545555433 22 244554444 4589999999999886666
No 53
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=92.43 E-value=0.06 Score=55.67 Aligned_cols=64 Identities=22% Similarity=0.033 Sum_probs=35.0
Q ss_pred hhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCCCcccccccc-eecccc
Q psy13464 416 ASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTDGTRRLRAAR-FITNLS 483 (515)
Q Consensus 416 ~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G~KMSks~Gn-fit~~~ 483 (515)
+.+++-...|+-.||.|+.. |.+.-+-..+.. |..+ -+.+|...| .++|+|||||.|| .|-+++
T Consensus 171 aaDil~~~a~~v~~G~DQ~~-~~~l~rdl~~r~-~~~~--p~~l~~pll~gldG~KMSKS~~ns~I~L~d 236 (372)
T 1n3l_A 171 ALDEEYLKVDAQFGGIDQRK-IFTFAEKYLPAL-GYSK--RVHLMNPMVPGLTGSKMSSSEEESKIDLLD 236 (372)
T ss_dssp HHHHHHTTCSEEEEEGGGHH-HHHHHHHHGGGG-TCCC--CEEEEECCCCCSSCC-------CCSCBTTC
T ss_pred hccHHHhcCCEEEcChhHHH-HHHHHHHHHHHc-CCCC--CEEEecCccCCCCcccccCCCCCCeEeccC
Confidence 33333345588899999976 666544444444 4222 357776665 6789999999998 674443
No 54
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=91.97 E-value=0.046 Score=56.33 Aligned_cols=57 Identities=9% Similarity=-0.056 Sum_probs=28.5
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCCCcccccccceecccc
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTDGTRRLRAARFITNLS 483 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~ 483 (515)
..||-.||.|+.+ |.|.=+-.++-..+ .+ -+-++.-.| .++|+|||||.||.|-+++
T Consensus 210 ~~~i~p~G~DQ~~-~i~l~rdla~r~n~-~~--~~~l~~pll~~ldG~KMSKS~~naI~L~d 267 (356)
T 2pid_A 210 GCRVQLGGSDQLG-NIMSGYEFINKLTG-ED--VFGITVPLITSTTGAKLGKSAGNAVWLNR 267 (356)
T ss_dssp CCCEEEEEGGGHH-HHHHHHHHHHHHSS-CC--CEEEEECCCC-------------CCBSST
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhCC-CC--ccccccccccCCCcccccCCCCCeeeccC
Confidence 5689999999986 77655544555432 22 255665555 6789999999999986666
No 55
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=91.83 E-value=0.051 Score=62.18 Aligned_cols=56 Identities=11% Similarity=-0.090 Sum_probs=49.5
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHH
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAK 196 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~ 196 (515)
.+|+||||+|+..|++.|..+ +.|+++.++|..++...+|..+|.+.+.++++.+.
T Consensus 67 ~lHiGHa~~~~~~DvlaRy~r-m~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~ 122 (880)
T 4arc_A 67 RLHMGHVRNYTIGDVIARYQR-MLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTY 122 (880)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH-HTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHH
T ss_pred CcchhhhHHHHHHHHHHHHHH-HcCCceEEecCccccCcHHHHHHHHcCCCHHHHHH
Confidence 499999999999999999986 68999999999999999999999777777776544
No 56
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=91.81 E-value=0.073 Score=55.42 Aligned_cols=66 Identities=17% Similarity=0.008 Sum_probs=35.1
Q ss_pred hhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeC-CCcccccccce-eccccc
Q psy13464 415 MASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGT-DGTRRLRAARF-ITNLSG 484 (515)
Q Consensus 415 M~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~-G~KMSks~Gnf-it~~~l 484 (515)
|+.+++-...|+-.||.|+.. |.+.-+-..+.. |.. .-+.+|.-+| .++ |+|||||.||. |-+++-
T Consensus 174 QaaD~l~~~~~~v~~G~DQ~~-~~~l~rdl~~r~-~~~--~p~~l~~pll~gl~~G~KMSKS~~ns~I~L~D~ 242 (394)
T 2dlc_X 174 QALDEQFLDVDCQFGGVDQRK-IFVLAEENLPSL-GYK--KRAHLMNPMVPGLAQGGKMSASDPNSKIDLLEE 242 (394)
T ss_dssp HHHHHHHTTCSEEEEEGGGHH-HHHHHHHHGGGG-TCC--CCEEEEECCCCCCC----------CCSCBTTCC
T ss_pred hhccHhhhCCCEEecCccHHH-HHHHHHHHHHHc-CCC--CCEEEecccccCCCCCCcCCCCCCCCEEeccCC
Confidence 344444467788999999976 665555445554 432 2357776665 567 99999999996 855543
No 57
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=91.55 E-value=0.077 Score=56.13 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=40.6
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCCC-cccccccceecccc
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTDG-TRRLRAARFITNLS 483 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G~-KMSks~Gnfit~~~ 483 (515)
..|+-.||.|+. +|.+.-+-..+.. |..+ .+-++.-.| .++|. |||||.||.|-+++
T Consensus 187 ~~~l~~gG~DQ~-~ni~l~rdlarr~-~~~~--~~~lt~pll~gldG~~KMSKS~~n~I~L~d 245 (432)
T 1h3f_A 187 RADVEMGGTDQR-FNLLVGREVQRAY-GQSP--QVCFLMPLLVGLDGREKMSKSLDNYIGLTE 245 (432)
T ss_dssp TCSEEEEEGGGH-HHHHHHHHHHHHT-TCCC--CEEEEECCCBCTTSSSBCCGGGTCCCBTTS
T ss_pred CccEEEechHHH-HHHHHHHHHHHHh-CCCC--ceEeecccccCCCCccccCcCCCCeeCCCC
Confidence 468999999999 5887555545544 4332 466676655 56886 99999999996655
No 58
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=91.25 E-value=0.078 Score=55.82 Aligned_cols=57 Identities=9% Similarity=-0.024 Sum_probs=40.0
Q ss_pred CceEeeecccccCCccchhHHHHhhh-cCCCCcccEEEEeeee-eeCCCcccccccceecccc
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAF-HNQSQWVNYWLHTGHL-RGTDGTRRLRAARFITNLS 483 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~-~g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~ 483 (515)
..||-.||.|+.+ |.+.=+=.++-. .+. + -+-++.-.| .++|+|||||.||.|-+++
T Consensus 186 ~~~i~~gG~DQ~~-ni~~grdla~r~~~~~-~--~~~l~~pll~~ldG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 186 NCKIQVGGSDQWG-NITSGIELMRRMYGQT-D--AYGLTIPLVTKSDGKKFGKSESGAVWLDA 244 (420)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHHHHHHCCC-C--CEEEEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhcCCC-C--eeEeecccccCCccccccCCCCCeEecCC
Confidence 6789999999987 666544444444 332 2 255665555 6789999999999986665
No 59
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=91.13 E-value=0.057 Score=58.87 Aligned_cols=38 Identities=26% Similarity=0.244 Sum_probs=34.8
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcch
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDID 177 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDid 177 (515)
..+|+||+|+++.-|.+.|+++ +.|+++..+.+++|.+
T Consensus 116 ~~~HiGH~R~~iigD~laR~l~-~~G~~V~~~~~i~D~G 153 (592)
T 1iq0_A 116 KELHVGHLRNIALGDAIARILA-YAGREVLVLNYIDDTG 153 (592)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHH-HTTEEEEEEEEECTTS
T ss_pred CCCcchHHHHHHHHHHHHHHHH-HcCCceEEEeccCCcc
Confidence 3489999999999999999996 8999999999999964
No 60
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=90.89 E-value=0.077 Score=55.96 Aligned_cols=57 Identities=11% Similarity=-0.078 Sum_probs=39.3
Q ss_pred CceEeeecccccCCccchhHHHHhhh-cCCCCcccEEEEeeee-eeCCCcccccccceecccc
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAF-HNQSQWVNYWLHTGHL-RGTDGTRRLRAARFITNLS 483 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~-~g~~~~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~ 483 (515)
..||-.||.|+.+ |.+.=+=..+-. .+. + -+-++.-.| .++|+|||||.||.|-+++
T Consensus 185 ~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~-~--~~~lt~pll~~ldG~KMSKS~~naI~L~d 243 (419)
T 2ts1_A 185 GCRLQIGGSDQWG-NITAGLELIRKTKGEA-R--AFGLTIPLVTKADGTKFGKTESGTIWLDK 243 (419)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHHHHHHC---C--CEEEEECCCCCTTSCCTTCCSSCCCBSST
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhcCCC-C--eeecccccccCCCcccccCCCCCeEecCC
Confidence 5789999999987 666544444444 322 2 255665555 5689999999999996665
No 61
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=90.67 E-value=0.066 Score=58.81 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=32.2
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCc
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTD 175 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTD 175 (515)
.-.|+||+|+.+.-|.+.|+++ +.|+++..+.+++|
T Consensus 156 ~plHvGHlRs~iiGD~laRil~-~~G~~V~~~~~i~D 191 (607)
T 1f7u_A 156 KPFHAGHLRSTIIGGFLANLYE-KLGWEVIRMNYLGD 191 (607)
T ss_dssp SCCBGGGHHHHHHHHHHHHHHH-HTTCEEEEEEEEBC
T ss_pred CCCccchHHHHHHHHHHHHHHH-HcCCCeeEEEeecC
Confidence 4579999999999999999995 88999999999998
No 62
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=90.65 E-value=0.085 Score=55.88 Aligned_cols=57 Identities=9% Similarity=-0.167 Sum_probs=39.3
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCCCcccccccc-eecccc
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTDGTRRLRAAR-FITNLS 483 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G~KMSks~Gn-fit~~~ 483 (515)
..||-.||.|+.+ |.+.=+=.++-..+ .+ -+-++.-.| .++|+|||||.|| .|-+++
T Consensus 187 ~~~i~~gG~DQ~~-ni~lgrdlarr~~~-~~--~~~l~~plL~~ldG~KMSKS~~nsaI~L~d 245 (432)
T 2jan_A 187 GCTLQIGGADQWG-NIIAGVRLVRQKLG-AT--VHALTVPLVTAADGTKFGKSTGGGSLWLDP 245 (432)
T ss_dssp CCCEEEECSTTHH-HHHHHHHHHHHHHC-CC--CEEEECCCCBCTTSCBTTBCSSSCBCBSST
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhCC-CC--ccccccccccCCCcCcCCCCCCCCeEEccC
Confidence 5689999999986 66554444444433 22 355665554 5689999999999 886655
No 63
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=90.48 E-value=0.072 Score=54.55 Aligned_cols=69 Identities=12% Similarity=-0.025 Sum_probs=42.2
Q ss_pred hhhhhhcCCCceEeeecccccCCccchhHHHHhhh---cCCC-Cccc-EEEEeeee-eeCCCcccccccceecccc
Q psy13464 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAF---HNQS-QWVN-YWLHTGHL-RGTDGTRRLRAARFITNLS 483 (515)
Q Consensus 414 AM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~---~g~~-~~a~-yWlH~G~v-~v~G~KMSks~Gnfit~~~ 483 (515)
-|+.+++-...|+-.||.|+.. |.|--+-.++.. +|.. +.+. +..|.-.| .++|.|||||.||.|-+++
T Consensus 144 LQAaDil~~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d 218 (340)
T 2g36_A 144 LQAADILIYKAEGVPVGEDQVY-HIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI 218 (340)
T ss_dssp HHHHHHHTTTCSEEEECGGGHH-HHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC
T ss_pred HHHhhHHHhCCCEEEcccchHH-HHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeeeC
Confidence 3455555567799999999987 776444333332 1310 1122 23333333 5679999999999995544
No 64
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=89.03 E-value=0.2 Score=51.66 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=41.4
Q ss_pred hhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeC-----------------CCccccc-
Q psy13464 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGT-----------------DGTRRLR- 474 (515)
Q Consensus 414 AM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~-----------------G~KMSks- 474 (515)
-|+.+++-...|+-.||.|+.. |++.-+-.++.. |..+ -+-+|...| .++ |+|||||
T Consensus 168 LQaaDil~~~~~~v~~G~DQ~~-~~~l~rdla~r~-~~~~--p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~ 243 (364)
T 2cya_A 168 MQVSDIFYMDLDIALGGMDQRK-AHMLARDVAEKL-GRKK--PVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSK 243 (364)
T ss_dssp HHHHHHHHTTCSEEEEEGGGHH-HHHHHHHHHTTT-TCCC--CEEEEECCCBCSSCC----------------CBCCSSS
T ss_pred HHHhhHHhcCCCEEeccchHHH-HHHHHHHHHHHc-CCCC--ceeeccceeeCCCcccccccccccccccccccccCCCC
Confidence 3444555567789999999986 665555555554 3222 245676655 455 6899999
Q ss_pred ccceeccc
Q psy13464 475 AARFITNL 482 (515)
Q Consensus 475 ~Gnfit~~ 482 (515)
.||.|-++
T Consensus 244 ~~~~I~L~ 251 (364)
T 2cya_A 244 PETAVFVV 251 (364)
T ss_dssp GGGSCBTT
T ss_pred CCCEeecc
Confidence 78888433
No 65
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=87.96 E-value=0.15 Score=51.90 Aligned_cols=68 Identities=13% Similarity=-0.004 Sum_probs=40.8
Q ss_pred hhhhhhcCCCceEeeecccccCCccch--hHHHHhhh-cCCCCc--ccEEE--Eee-eeeeCCCcccccccceecccc
Q psy13464 414 AMASHFFGGQVDLHTGGIDLKFPHHEN--EEAQSCAF-HNQSQW--VNYWL--HTG-HLRGTDGTRRLRAARFITNLS 483 (515)
Q Consensus 414 AM~~~~lG~~~DIH~GG~DL~FPHHEN--EiAQsea~-~g~~~~--a~yWl--H~G-~v~v~G~KMSks~Gnfit~~~ 483 (515)
-|+.+++-..-|+--||.|+.. |.|. |+|.-.-. +| +-+ +.-.+ ... ...++|+|||||.||.|-+++
T Consensus 130 LQAaDil~~~~~~vpvG~DQ~~-hi~l~Rdia~r~n~~~g-~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d 205 (322)
T 3tzl_A 130 LMAADILLFDTRIVPVGKDQIQ-HVEIARDIALKVNNEWG-EIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS 205 (322)
T ss_dssp HHHHHHHHTTCSEEECCGGGHH-HHHHHHHHHHHHHHHHC-SCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC
T ss_pred HHHHHHHHhCCcEEEeccchHH-HHHHHHHHHHHhccccc-CCCCCchhhhccccccccCCCCCcCCCCCCCceecCC
Confidence 3455555567789999999986 7754 44443221 12 111 12222 122 235689999999999996554
No 66
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=87.94 E-value=0.17 Score=51.14 Aligned_cols=61 Identities=18% Similarity=0.124 Sum_probs=37.8
Q ss_pred hhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCC-Ccccccccceeccccc
Q psy13464 416 ASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTD-GTRRLRAARFITNLSG 484 (515)
Q Consensus 416 ~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G-~KMSks~Gnfit~~~l 484 (515)
+.+++-...|+-.||.|+.. |. |++---+ . + .-+-+|.-.| .++| +|||||.||.|-+++-
T Consensus 156 aaDil~~~~~~v~~G~DQ~~-~~--~l~R~i~--~--~-~~~~~~~~~l~~l~G~~KMSKS~~~~I~L~d~ 218 (314)
T 2zp1_A 156 VNTSHYLGVDVAVGGMEQRK-IH--MLARELL--P--K-KVVCIHNPVLTGLDGEGKMSSSKGNFIAVDDS 218 (314)
T ss_dssp HHHHHHHTCSEEEEEGGGHH-HH--HHHHHHS--S--S-CCEEEEECCCBCTTSSSBCCTTTTCSCBTTCC
T ss_pred HHhHHhhCCCEEEcChhHHH-HH--HHHHHhc--C--C-CcEEeeccccccCCcccccCCCCcceecCCCC
Confidence 33333336688899999987 43 3332211 2 1 1245665554 5678 7999999999855543
No 67
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=87.45 E-value=0.14 Score=56.40 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=34.5
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcch
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDID 177 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDid 177 (515)
.-+|+||+|+.+.-|.+.|+++ +.|+++..+.+++|.-
T Consensus 132 ~~~HiGH~Rs~iigD~laR~l~-~~G~~V~~~~~i~D~G 169 (629)
T 2zue_A 132 KPLHMGHARNAILGDVMARILR-FLGYEVEVQNYIDDLG 169 (629)
T ss_dssp SCCBHHHHHHHHHHHHHHHHHH-HTTCEEEEEEEECTTS
T ss_pred CCCccchhHHHHHHHHHHHHHH-HcCCCceEEecccchh
Confidence 3489999999999999999995 8999999999999953
No 68
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=87.06 E-value=0.33 Score=50.28 Aligned_cols=65 Identities=15% Similarity=-0.052 Sum_probs=40.1
Q ss_pred hhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeeee-e-CCC-ccccccc-ceeccc
Q psy13464 415 MASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR-G-TDG-TRRLRAA-RFITNL 482 (515)
Q Consensus 415 M~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v~-v-~G~-KMSks~G-nfit~~ 482 (515)
|+.+++-...|+-.||.|+.+ |++.=+-...-. |.. ..-+.+|...|. + +|. |||||.+ |.|-+.
T Consensus 192 QaaDil~l~ad~vpgG~DQ~~-~l~l~Rdla~r~-~~~-~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~ 260 (373)
T 3vgj_A 192 QCADIFFLNVDICQLGIDQRK-VNMLAREYCDIK-KIK-KKPVILSHGMLPGLLEGQEKMSKSDENSAIFMD 260 (373)
T ss_dssp HHHHHHHTTCSEECCBGGGHH-HHHHHHHHHHHH-TCS-CCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTT
T ss_pred HHhcccccCCcEEEcchhhHH-HHHHHHHHHHHh-CCC-CCceEEeCCeeecCCCCCCCCcCCCCCCeeecC
Confidence 444444446689999999986 665443333333 322 112567767664 3 674 9999994 788443
No 69
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=86.53 E-value=0.29 Score=51.09 Aligned_cols=60 Identities=13% Similarity=-0.017 Sum_probs=37.9
Q ss_pred CceEeeecccccCCccchhHHHHhhhcC-C---------CC----cccEEEEeeee-eeCCCcccccccceecccc
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHN-Q---------SQ----WVNYWLHTGHL-RGTDGTRRLRAARFITNLS 483 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g-~---------~~----~a~yWlH~G~v-~v~G~KMSks~Gnfit~~~ 483 (515)
..||-.||.|+ -||-|.=+=..+-..+ . .| -..+-++.-.| .++|+|||||.||.|-+++
T Consensus 232 ~~~i~~gG~DQ-~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d 306 (392)
T 1y42_X 232 GVQMQIGGSDQ-YGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDP 306 (392)
T ss_dssp CEEEEEECTTC-HHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSST
T ss_pred CccEEecCcch-HhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccC
Confidence 46899999999 3466543333222110 0 00 12356676665 6789999999999997666
No 70
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=86.25 E-value=0.3 Score=49.79 Aligned_cols=67 Identities=15% Similarity=-0.027 Sum_probs=40.2
Q ss_pred hhhhhcCCCceEeeecccccCCccchhHHHHhhh---cCCC-CcccEEEEee---e-eeeCC-Ccccccccceecccc
Q psy13464 415 MASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAF---HNQS-QWVNYWLHTG---H-LRGTD-GTRRLRAARFITNLS 483 (515)
Q Consensus 415 M~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~---~g~~-~~a~yWlH~G---~-v~v~G-~KMSks~Gnfit~~~ 483 (515)
|+.+++-...|+-.||.|+.. |.|.-+-.++.. +|.. +.+. -+|+. . ..++| +|||||.||.|-+++
T Consensus 133 QaaDil~~~~~lvp~G~DQ~~-~i~l~rdla~r~n~~~g~~f~~P~-~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d 208 (337)
T 2el7_A 133 QAADILIYKADTVPVGEDQVQ-HIELTREIARRFNHLFGETFPEPQ-ALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE 208 (337)
T ss_dssp HHHHHHHTTCCEEECCGGGCH-HHHHHHHHHHHHHHHHSSCCCCCE-EECCTTSCCCBCTTSSSBCCTTTTCCCBSSS
T ss_pred HHhhHHhhCCcEEEcccchHH-HHHHHHHHHHHHHhhcCcccCCCe-eecccccccccCCCCccccCCCCCCeeeCcC
Confidence 344444456789999999987 776544333332 2410 1122 33432 2 36688 899999999885444
No 71
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=85.70 E-value=0.29 Score=50.69 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=42.5
Q ss_pred hhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCC-------CCcccEEEEeeee-eeCC-----------------
Q psy13464 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQ-------SQWVNYWLHTGHL-RGTD----------------- 468 (515)
Q Consensus 414 AM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~-------~~~a~yWlH~G~v-~v~G----------------- 468 (515)
-|+.+++-...|+-.||.|+. ||++.-+-.+.-. +. +.+.-+-+|...| .++|
T Consensus 171 LQaaDil~~~~~~vp~G~DQ~-~~i~l~rdla~r~-n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~ 248 (375)
T 2cyc_A 171 MQVADIFYQGVTIAHAGMDQR-KAHVIAIEVAQKL-RYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKA 248 (375)
T ss_dssp HHHHHHHHTTCSEEEEEGGGH-HHHHHHHHHGGGC-SSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHH
T ss_pred HHHHHHHHhCCCeecccchHH-HHHHHHHHHHHHh-CCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhh
Confidence 344455545678999999999 6886554444443 32 0112245665555 5667
Q ss_pred -Ccccccc-cceecccc
Q psy13464 469 -GTRRLRA-ARFITNLS 483 (515)
Q Consensus 469 -~KMSks~-Gnfit~~~ 483 (515)
+|||||. ||.|-+++
T Consensus 249 ~~KMSKS~~~~~I~L~d 265 (375)
T 2cyc_A 249 QMKMSKSKPYSAVFIHD 265 (375)
T ss_dssp HHBGGGSCGGGSCBTTC
T ss_pred hhcccCCCCCCeeccCC
Confidence 7999998 78774444
No 72
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=84.17 E-value=0.49 Score=48.45 Aligned_cols=58 Identities=12% Similarity=-0.122 Sum_probs=36.1
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-ee-CC-Ccccccc-cceeccccc
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RG-TD-GTRRLRA-ARFITNLSG 484 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v-~G-~KMSks~-Gnfit~~~l 484 (515)
..|+-.||.|+.. |.|.-+=.++.. |.. .+ +.+|...| .+ +| +|||||. ||.|-+++-
T Consensus 186 ~~~~~~~G~DQ~~-~i~l~Rdia~r~-~~~-~p-~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d~ 247 (348)
T 2j5b_A 186 GIDICQLGIDQRK-VNMLAIEYANDR-GLK-IP-ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT 247 (348)
T ss_dssp CCSEECCBGGGHH-HHHHHHHHHHHT-TCC-CC-EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTCC
T ss_pred CCcEEEeccChHH-HHHHHHHHHHHh-CCC-Cc-eeecCccccCCCCcccccccCCCCCeEeecCC
Confidence 5688899999984 665444334443 322 22 34666555 34 45 6999999 577844443
No 73
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=83.18 E-value=0.88 Score=47.55 Aligned_cols=63 Identities=14% Similarity=-0.006 Sum_probs=37.8
Q ss_pred hhhhhcCC-CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCC--Ccccccccc-eecc
Q psy13464 415 MASHFFGG-QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTD--GTRRLRAAR-FITN 481 (515)
Q Consensus 415 M~~~~lG~-~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G--~KMSks~Gn-fit~ 481 (515)
|+...+-. .-|+--||.|+.+ |.+.-+-.+.-. |..+ + .-+|+..| .++| +|||||.+| .|-+
T Consensus 198 QaaDil~~~~a~~vpvG~DQ~~-hl~l~Rdla~r~-n~~~-p-~~l~~~~l~gLdG~~~KMSKS~~ns~I~L 265 (392)
T 3jxe_A 198 QIAPTFFERKRCLIPAAIDQDP-YWRLQRDFAESL-GYYK-T-AALHSKFVPSLTSLSGKMSASKPETAIYL 265 (392)
T ss_dssp HHGGGGSSSSCEEEEEEGGGHH-HHHHHHHHTGGG-TSCC-C-EEEEECCCCCSSCSSSCCCTTSGGGCCBT
T ss_pred HHhhHHhhcCCceeecccchHH-HHHHHHHHHHHc-CCCC-C-eeeecccccCCCCCccccccCCCCCeeeC
Confidence 34444433 2466689999985 776544444444 3222 2 23454554 5677 599999998 8833
No 74
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=82.76 E-value=0.42 Score=49.08 Aligned_cols=68 Identities=13% Similarity=-0.122 Sum_probs=39.7
Q ss_pred hhhhhcCCCceEeeecccccCCccchhHHHHhhh---cCC-CCcccEEE-Eeeee-eeCCC-cccccccceecccc
Q psy13464 415 MASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAF---HNQ-SQWVNYWL-HTGHL-RGTDG-TRRLRAARFITNLS 483 (515)
Q Consensus 415 M~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~---~g~-~~~a~yWl-H~G~v-~v~G~-KMSks~Gnfit~~~ 483 (515)
|+.+++-...|+-.||.|+.. |.|.-+-.++.. +|. -+.+...+ |...| .++|+ |||||.||.|-+++
T Consensus 154 QAaDil~~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d 228 (351)
T 1yi8_B 154 QAADIAAFGATLVPVGDDQLP-MLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD 228 (351)
T ss_dssp HHHHHHHHTCSEEEECGGGHH-HHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC
T ss_pred HHhhHHhcCCCEEEecCCcHH-HHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCC
Confidence 333444345689999999987 776544444332 231 01122223 23332 56887 99999999884443
No 75
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=82.61 E-value=0.58 Score=48.95 Aligned_cols=54 Identities=9% Similarity=-0.030 Sum_probs=25.6
Q ss_pred ceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCC--Ccccccccceecc
Q psy13464 424 VDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTD--GTRRLRAARFITN 481 (515)
Q Consensus 424 ~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G--~KMSks~Gnfit~ 481 (515)
-|+-.||+|+.+ |.+.=+-.+.-. |..+ .+-+|+-+| .++| +|||||.||.|-+
T Consensus 225 ~~lvp~G~DQ~~-~i~l~Rdla~r~-~~~~--p~~l~~~~l~gLdG~~~KMSKS~~~~I~L 281 (395)
T 3i05_A 225 FCLIPQAIDQDP-YFRLTRDIAPRL-GYLK--PAVIHSKFFPGLSGPKGKMSSSSGTAVLL 281 (395)
T ss_dssp EEEEEEEGGGHH-HHHHHHHTHHHH-TCCC--CEEEEECCCCCC-------------CCBT
T ss_pred ceEEEeccchHH-HHHHHHHHHHHc-CCCC--ceeeccccccCCCCCcccCCCCCCCcccC
Confidence 578899999985 665433333333 4322 245665555 5678 7999999999943
No 76
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=82.48 E-value=0.52 Score=48.35 Aligned_cols=68 Identities=16% Similarity=0.048 Sum_probs=42.3
Q ss_pred hhhhhhcCCCceEeeecccccCCccchhHHHHhhhc---CC-CCcccEEEEe---e-eeeeCC--Ccccccccc---eec
Q psy13464 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFH---NQ-SQWVNYWLHT---G-HLRGTD--GTRRLRAAR---FIT 480 (515)
Q Consensus 414 AM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~---g~-~~~a~yWlH~---G-~v~v~G--~KMSks~Gn---fit 480 (515)
-|+.+++-...|+-.||.|+.+ |.|--+-.++... |. -+.+. -+|. . ...++| +|||||.|| .|-
T Consensus 138 LQaaDil~~~a~~vpvG~DQ~~-~lel~Rdia~r~n~~yg~~f~~P~-~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~ 215 (348)
T 2yy5_A 138 LMAGDILLYQPDIVPVGNDQKQ-HLELTRDLAQRIQKKFKLKLRLPQ-FVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIY 215 (348)
T ss_dssp HHHHHHHTTCCSEEECCGGGHH-HHHHHHHHHHHHHHHHCCCCCCCE-EECCTTTTTCBCSSCTTSBCCSSCSCGGGCCB
T ss_pred HHHHHHHHhCccEEEecccHHH-HHHHHHHHHHHhhhhcccccCCCe-eecccccccccCCCCcchhcCCCCCCCCceEe
Confidence 4555666677899999999987 7765444444331 31 01122 3342 1 235677 899999999 785
Q ss_pred ccc
Q psy13464 481 NLS 483 (515)
Q Consensus 481 ~~~ 483 (515)
+++
T Consensus 216 L~D 218 (348)
T 2yy5_A 216 LDD 218 (348)
T ss_dssp TTC
T ss_pred ecC
Confidence 555
No 77
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=81.91 E-value=0.62 Score=47.32 Aligned_cols=71 Identities=18% Similarity=0.089 Sum_probs=42.2
Q ss_pred chhhhhhcCCCceEeeecccccCCccchhHHHHhhhc---CC-CCcccEEEE--eee-eeeCC--Ccccccccc-e--ec
Q psy13464 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFH---NQ-SQWVNYWLH--TGH-LRGTD--GTRRLRAAR-F--IT 480 (515)
Q Consensus 413 SAM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~---g~-~~~a~yWlH--~G~-v~v~G--~KMSks~Gn-f--it 480 (515)
.-|+.+++-...|+-.||.|+.. |.|--+-.++... |. -..+...+. ... ..++| +|||||.|| . |-
T Consensus 127 vLQaaDil~~~~~~vpvG~DQ~~-~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~ 205 (328)
T 1i6k_A 127 PLMAADILLYNTDIVPVGEDQKQ-HIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 205 (328)
T ss_dssp HHHHHHHHTTTCSEEECCGGGHH-HHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCB
T ss_pred HHHHHHHHHhCCCEEecccchHH-HHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceee
Confidence 34555666677899999999987 7764443333321 21 011222331 122 26678 899999999 6 75
Q ss_pred cccc
Q psy13464 481 NLSG 484 (515)
Q Consensus 481 ~~~l 484 (515)
+++-
T Consensus 206 L~d~ 209 (328)
T 1i6k_A 206 LLDD 209 (328)
T ss_dssp TTCC
T ss_pred ecCC
Confidence 5543
No 78
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=78.13 E-value=1.1 Score=47.33 Aligned_cols=57 Identities=12% Similarity=-0.101 Sum_probs=30.3
Q ss_pred CceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCC--Ccccccccc-eecccc
Q psy13464 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTD--GTRRLRAAR-FITNLS 483 (515)
Q Consensus 423 ~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G--~KMSks~Gn-fit~~~ 483 (515)
.-++--||.|+.+ |.+.-+-.++.. |.. -+ .-+|.-.| .++| +|||||.|| .|-+++
T Consensus 249 ~~~lvp~G~DQ~~-~i~l~Rdla~r~-~~~-~p-~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 249 TPCLIPCAIDQDP-YFRVCRDVADKL-KYS-KP-ALLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp CCEEEEEEGGGHH-HHHHHHHHHHHH-TSC-CC-EEEEECCCCCTTC--------CGGGCCBTTC
T ss_pred CceEEEeccCcHH-HHHHHHHHHHHh-CCC-Cc-eeeccccccCCCCCccccCCCCCCCeEeccC
Confidence 3456669999987 655444444443 322 22 23565554 6788 899999999 785555
No 79
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=77.67 E-value=1.5 Score=46.05 Aligned_cols=60 Identities=10% Similarity=-0.058 Sum_probs=37.9
Q ss_pred cCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCC--Ccccccc-cceecccc
Q psy13464 420 FGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTD--GTRRLRA-ARFITNLS 483 (515)
Q Consensus 420 lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G--~KMSks~-Gnfit~~~ 483 (515)
+...-++-.||+|+.+ |.+.=+-.+.-. |..+ + +-+|+-+| .++| +|||||. ||.|-+.|
T Consensus 240 l~~~a~lvpvG~DQ~~-~i~l~Rdla~r~-~~~~-p-~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 240 GKGAMCLVPAAVDQDP-FFRLARDKAKAL-GEKK-P-SSIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp CTTCEEEEEEEGGGHH-HHHHHHHHHHHH-TCCC-C-EEEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred ccCCCeEEeeccchHH-HHHHHHHHHHHc-CCCC-c-eeeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 4456678889999986 765533333333 4222 2 34555555 5678 6999998 68884443
No 80
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=77.29 E-value=1 Score=50.86 Aligned_cols=129 Identities=17% Similarity=0.095 Sum_probs=91.2
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcc-cccchHHHHHHHHHHhHHHHhhHHHHHHHHHH
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANS-LKEDYKTVAKRYFLRLIFKILHQKVVRKLAID 218 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~ 218 (515)
.+|+|||++|+..|++-|..+ ..|+++.+++....-.-+|..+|.+ ++.+++.....+.
T Consensus 52 ~lHiGH~~~~~~~D~i~R~~r-m~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g------------------- 111 (821)
T 1ile_A 52 LPHVGHAQARSYKDLFPRYKT-MRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYG------------------- 111 (821)
T ss_dssp CCCTTHHHHHHHHHHHHHHHH-HTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHC-------------------
T ss_pred CCchhhhHhHHHHHHHHHHHH-hcCCcccccccccCCCchHHHHHHHHhcccccchHhhcC-------------------
Confidence 489999999999999999876 6899999988776666677766643 3444331100000
Q ss_pred HHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccchhhhhhh
Q psy13464 219 LKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLF 298 (515)
Q Consensus 219 l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (515)
.++ |.+.++. +
T Consensus 112 --------------~~~---------------------------------f~~~~~~----------------------~ 122 (821)
T 1ile_A 112 --------------IER---------------------------------FNQACRE----------------------S 122 (821)
T ss_dssp --------------HHH---------------------------------HHHHHHH----------------------H
T ss_pred --------------HHH---------------------------------HHHHHHH----------------------H
Confidence 011 1111111 2
Q ss_pred hHHHHHHHHHHHHHcCCCC-Cccccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 299 NFRYELEYFESMEKFGVLP-PTRATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 299 ~~~y~~~F~edm~aLNI~~-PD~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
+.+|.+.+.+++++||+.- -|.+-+++ +|...++.++.+|.++|++|+ ...-|+||...
T Consensus 123 ~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~-~~~~v~wcp~~ 184 (821)
T 1ile_A 123 VFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYR-DHKVVPYCPRC 184 (821)
T ss_dssp TTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEE-ECCEEEEETTT
T ss_pred HHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeee-cCcceEecCCC
Confidence 2238899999999999532 26666776 588899999999999999998 78889998765
No 81
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=76.96 E-value=1.6 Score=45.66 Aligned_cols=52 Identities=12% Similarity=-0.081 Sum_probs=23.4
Q ss_pred EeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCC--Ccccccccc-eecc
Q psy13464 426 LHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTD--GTRRLRAAR-FITN 481 (515)
Q Consensus 426 IH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G--~KMSks~Gn-fit~ 481 (515)
+--||+|+.+ |.+.=+-.+.-. |..+ -+-+|.-+| .++| +|||||.|| .|-+
T Consensus 223 lvp~G~DQ~~-~i~l~Rdla~r~-~~~~--p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L 278 (393)
T 3hv0_A 223 LVPHAIDQDP-YFRMVRDVAPRL-GYLK--PSSIHSIFLPSLQGSQTKMSASVQNSSIFV 278 (393)
T ss_dssp EEEEEGGGHH-HHHHHHHHTGGG-TCCC--CEEEEECCCCC-------------CCCCBT
T ss_pred ecccccchHH-HHHHHHHHHHHc-CCCC--ceeeccCcccCCCCCCcCCCCCCCCCeEec
Confidence 4579999985 775544444443 3222 245666655 5678 799999997 6733
No 82
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=76.53 E-value=0.93 Score=50.92 Aligned_cols=59 Identities=17% Similarity=0.076 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHcCCCCCc--cc--ccc--cccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 298 FNFRYELEYFESMEKFGVLPPT--RA--TRV--SEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 298 ~~~~y~~~F~edm~aLNI~~PD--~~--pRa--TehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
+..+|.+.|.+++++|||.. | .+ +.. .+|...+++++.+|.++|++|+ .+..|+||...
T Consensus 125 ~~~~~~~~~~~~~~~lgi~~-Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~-~~~~v~~~~~~ 189 (810)
T 1wkb_A 125 IVKYFMKAAKETFIRAGFSV-DWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVK-GAHRVRWDPVV 189 (810)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEE-EEEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhCeEE-ecCCceEecCCchHHHHHHHHHHHHHHHCCCEEE-CCeeeeccCCc
Confidence 34559999999999999997 6 22 333 3478899999999999999998 78889998765
No 83
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=74.51 E-value=2.4 Score=44.14 Aligned_cols=54 Identities=13% Similarity=-0.105 Sum_probs=34.1
Q ss_pred eEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCCC-ccccc-ccceeccc
Q psy13464 425 DLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTDG-TRRLR-AARFITNL 482 (515)
Q Consensus 425 DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G~-KMSks-~Gnfit~~ 482 (515)
++--+|+|+.+ |.+.-+-.++-. |..+ + .-++...| .++|. ||||| .||.|-+.
T Consensus 226 ~~VpvG~DQ~~-hl~l~Rdla~r~-n~~~-p-~~l~~~~l~gLdG~~KMSKSd~~~~I~L~ 282 (386)
T 3hzr_A 226 CLVLDSIKNVQ-FHSIIDQIATTL-NFIQ-P-TVLFHKMVPLLSGVTKFDIPSDHNSILLS 282 (386)
T ss_dssp EEEEEEGGGHH-HHHHHHHHHHHH-TCCC-C-EEEEECCCCCTTCTTCCCCCCTTTSCBTT
T ss_pred cccccccchHH-HHHHHHHHHHHc-CCCC-c-eEeecCeeeCCCCCCccCcCCCCCeeecC
Confidence 34445999986 776544444444 4322 2 45565555 56785 99999 79999443
No 84
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=74.30 E-value=1.6 Score=48.80 Aligned_cols=65 Identities=11% Similarity=-0.041 Sum_probs=39.3
Q ss_pred hhhhhhcCCCceEeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-ee-CC-Cccccccc-ceecc
Q psy13464 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RG-TD-GTRRLRAA-RFITN 481 (515)
Q Consensus 414 AM~~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v-~G-~KMSks~G-nfit~ 481 (515)
-|+.+++-...|+-.||.|+.+ |.+.=+-.+.-. |.. ..-+.++...| .+ +| +|||||.| |.|-+
T Consensus 174 LQAaDil~~~ad~vpvG~DQ~~-~l~l~Rdla~r~-n~~-~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L 242 (690)
T 3p0j_A 174 MQCCDIFFLKADICQLGLDQRK-VNMLAREYCDLI-GRK-LKPVILSHHMLAGLKQGQAKMSKSDPDSAIFM 242 (690)
T ss_dssp HHHHHHHHTTCSEECCBGGGHH-HHHHHHHHHHHT-TCC-CCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBT
T ss_pred HHHHHHHhhCCCEEeccccHHH-HHHHHHHHHHHh-CCC-CCceEeecCeeecCCCCCcCCCCCCCCCeeec
Confidence 3444444445689999999986 664433333333 322 11245666666 34 67 49999998 67743
No 85
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=73.09 E-value=1.1 Score=51.33 Aligned_cols=127 Identities=17% Similarity=0.102 Sum_probs=90.2
Q ss_pred cccccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHHHhhhcccccchHHHHHHHHHHhHHHHhhHHHHHHHH
Q psy13464 137 VGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLA 216 (515)
Q Consensus 137 ~~~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKii~ra~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~ 216 (515)
-|. +|+|||+|++..|++-|..+ ..|+++.++|--..---+|..+|.+.|.+++.+
T Consensus 60 nG~-lHiGHa~n~~~~Dii~Ry~r-m~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~---------------------- 115 (917)
T 1ffy_A 60 NGN-LHMGHALNKILKDFIVRYKT-MQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKM---------------------- 115 (917)
T ss_dssp SSC-CCHHHHHHHHHHHHHHHHHH-TTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTT----------------------
T ss_pred CCc-chHHHHHHHHHHHHHHHHHH-hCCCCCCCcccCchhhHHHHHHHHHcCCCchhC----------------------
Confidence 354 89999999999999999875 689999998766544555544442222222110
Q ss_pred HHHHhhhhcCCCCccchHHHHHHHhhhhchhhhhhcccccccCCCcccchhHhhhhhhhHHHHHhhccCCccccchhhhh
Q psy13464 217 IDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEF 296 (515)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~e~~~~~~dil~~~LD~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 296 (515)
+.+-|+++.+.
T Consensus 116 ------------------------------------------------~~~~f~~~~~~--------------------- 126 (917)
T 1ffy_A 116 ------------------------------------------------STAEFREKCKE--------------------- 126 (917)
T ss_dssp ------------------------------------------------CHHHHHHHHHH---------------------
T ss_pred ------------------------------------------------CHHHHHHHHHH---------------------
Confidence 11222223232
Q ss_pred hhhHHHHHHHHHHHHHcCCCC-Cccccccc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 297 LFNFRYELEYFESMEKFGVLP-PTRATRVS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 297 ~~~~~y~~~F~edm~aLNI~~-PD~~pRaT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
++.+|.+.+.+++++|||.. -|.+-+++ +|...++.++.+|.++|++|+ ...-|+||...
T Consensus 127 -~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr-~~~~v~wcp~~ 189 (917)
T 1ffy_A 127 -FALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYK-GKKPVYWSPSS 189 (917)
T ss_dssp -HHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEE-EEEEEEEETTT
T ss_pred -HHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEe-cccceeccCCC
Confidence 44559999999999999974 24555555 588899999999999999998 77788988765
No 86
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=69.82 E-value=1.2 Score=46.64 Aligned_cols=69 Identities=20% Similarity=0.094 Sum_probs=40.3
Q ss_pred chhhhhhcCCCceEeeecccccCCccch--hHHHHhhh-cCCCCcc--cEEEEe---eeeee-CC-Ccccccc---ccee
Q psy13464 413 SAMASHFFGGQVDLHTGGIDLKFPHHEN--EEAQSCAF-HNQSQWV--NYWLHT---GHLRG-TD-GTRRLRA---ARFI 479 (515)
Q Consensus 413 SAM~~~~lG~~~DIH~GG~DL~FPHHEN--EiAQsea~-~g~~~~a--~yWlH~---G~v~v-~G-~KMSks~---Gnfi 479 (515)
.-|+.+.+-..-|+--||.|+.+ |+|- |+|+---. +| +.++ .-.++. -...+ +| +|||||. ||.|
T Consensus 161 vLQAADIl~~~ad~vPvG~DQ~~-hleltRdia~rfn~~y~-~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I 238 (388)
T 3prh_A 161 PLMAADILLYGTDLVPPGEDQKQ-HLELTRNLAERFNKKYN-DIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYI 238 (388)
T ss_dssp HHHHHHHHTTTCCEECCCSSCHH-HHHHHHHHHHHHHHHTC-SCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCC
T ss_pred HHHHHHHHHhCCCEEEechhHHH-HHHHHHHHHHHhCcccC-CCcccchhhhcccccccccCCCCCCccCCCCCCCCCee
Confidence 45667777678899999999985 7764 44443221 12 2222 112221 11223 33 6999999 8999
Q ss_pred cccc
Q psy13464 480 TNLS 483 (515)
Q Consensus 480 t~~~ 483 (515)
.+.|
T Consensus 239 ~L~D 242 (388)
T 3prh_A 239 TLLD 242 (388)
T ss_dssp BTTC
T ss_pred ecCC
Confidence 5433
No 87
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=68.30 E-value=7.3 Score=40.57 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=39.0
Q ss_pred CCceeEEE-cCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcc---------hHHHHHHHhhhhhhhh
Q psy13464 50 KNHLKWYA-CGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDID---------DKIINKANSLKEDYKT 118 (515)
Q Consensus 50 ~~~v~~y~-cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiD---------DKIi~~A~~l~~~y~~ 118 (515)
++.+.+|+ .+||-- +|||| ||.+.++++ |++..|..|..+ |||.. ++|-+.+++.+++|.+
T Consensus 80 ~~~~~vysG~~PTG~--lHLGh---~v~~~~~~~-lQ~~~g~~v~i~--I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA 150 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKE--VALEE---YITLEFARY-LQDAFNIQVIIQ--ILDDIKVLNREATINEASKMSNDLMKYILA 150 (386)
T ss_dssp TCCEEEEEEECCCSS--CBGGG---HHHHHHHHH-HHHHHCCEEEEE--ECHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEeccCCCCC--ccHHH---HHHHHHHHH-HHHhcCCeEEEE--eCchHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 45677773 467754 99999 667766655 665567777766 77743 3444555555555554
No 88
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=67.11 E-value=1.7 Score=50.08 Aligned_cols=59 Identities=14% Similarity=0.020 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHcCCCCCcc--cccccc----cHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 298 FNFRYELEYFESMEKFGVLPPTR--ATRVSE----FIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 298 ~~~~y~~~F~edm~aLNI~~PD~--~pRaTe----hI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
+..+|.+.+.++|++||+.. |- .-++++ |...++.++.+|.++|++|+ ...-|+||...
T Consensus 125 ~~~~~~~~~~~~~~~lG~~~-Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr-~~~~v~wcp~~ 189 (967)
T 1wz2_A 125 IVKYFMKAAKETFIRAGFSV-DWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVK-GAHRVRWDPVV 189 (967)
T ss_dssp HHHHHHHHHHHHHHTTTCCC-CTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEE-CCCCCEECTTT
T ss_pred HHHHHHHHHHHHHHHhCceE-ecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEE-eceEecccCCC
Confidence 34559999999999999986 52 223344 78899999999999999998 77788887654
No 89
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=66.38 E-value=3 Score=44.45 Aligned_cols=51 Identities=12% Similarity=0.021 Sum_probs=31.9
Q ss_pred EeeecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCCC--cccccccc-eec
Q psy13464 426 LHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTDG--TRRLRAAR-FIT 480 (515)
Q Consensus 426 IH~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G~--KMSks~Gn-fit 480 (515)
+--+|+|+.+ |+|.-+-.+.-. |..+ + .-+|...| .++|. |||||.+| .|.
T Consensus 290 ~VPvG~DQ~~-hlel~Rdia~rf-n~~~-p-~~~~~~~l~gLdG~~~KMSKS~~ns~I~ 344 (451)
T 3foc_A 290 LIASGIEQDP-YFRLARDLAPRM-GHPK-N-AYLLGKFLPGLQGSGTKMSASDPNSAIY 344 (451)
T ss_dssp EEEECTTTHH-HHHHHHHHTTTT-TSCC-C-EEEEECCCCBTTBTTCCCCTTCGGGSCB
T ss_pred eeeeecchHH-HHHHHHHHHHHh-CCCC-C-eeecCCcccCCCCCCCccCCCCCCCeee
Confidence 5568999996 776544444443 4322 2 24554544 56775 99999997 673
No 90
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=65.09 E-value=3.1 Score=44.05 Aligned_cols=53 Identities=9% Similarity=-0.084 Sum_probs=32.4
Q ss_pred eecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCC--Ccccccccc-eeccccc
Q psy13464 428 TGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTD--GTRRLRAAR-FITNLSG 484 (515)
Q Consensus 428 ~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G--~KMSks~Gn-fit~~~l 484 (515)
-+|+|+.+ |.+.=+-.++.. |.. -+-. ++.-.| .++| +|||||.|| .|-+++-
T Consensus 261 pvG~DQ~~-~i~l~Rdla~r~-~~~-~P~~-l~~pll~gLdG~~~KMSKS~~nsaI~L~D~ 317 (437)
T 1r6u_A 261 PCAIDQDP-YFRMTRDVAPRI-GYP-KPAL-LHSTFFPALQGAQTKMSASDPNSSIFLTDT 317 (437)
T ss_dssp EEEGGGHH-HHHHHHHHGGGG-TCC-CCEE-EEECCCEETTEEEEECCTTSSSSCCBTTCC
T ss_pred EeehhhHH-HHHHHHHHHHHh-CCC-CceE-eecccccCCCCCccccCCCCCCCeeeccCC
Confidence 37999986 554444344443 322 2223 555554 6788 799999999 7855443
No 91
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=61.37 E-value=3.4 Score=42.44 Aligned_cols=68 Identities=16% Similarity=0.043 Sum_probs=39.7
Q ss_pred chhhhhhcCCCceEeeecccccCCccch--hHHHHhhh-cCCCCcc--cEEEEe--eee-ee-CC-Cccccccc---cee
Q psy13464 413 SAMASHFFGGQVDLHTGGIDLKFPHHEN--EEAQSCAF-HNQSQWV--NYWLHT--GHL-RG-TD-GTRRLRAA---RFI 479 (515)
Q Consensus 413 SAM~~~~lG~~~DIH~GG~DL~FPHHEN--EiAQsea~-~g~~~~a--~yWlH~--G~v-~v-~G-~KMSks~G---nfi 479 (515)
.-|+.+.+-..-|+--||.|+.+ |+|- |+|+---. +| +.++ .-.++. ..| .+ +| +|||||.+ |.|
T Consensus 142 ~lQAaDil~~~ad~vpvG~DQ~~-hleltRdia~rfn~~yg-~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I 219 (346)
T 3n9i_A 142 VLMAADILLYQTNQVPVGEDQKQ-HLELSRDIASRFNNLYG-DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVI 219 (346)
T ss_dssp HHHHHHHHTTTCSEECCCGGGHH-HHHHHHHHHHHHHHHHS-SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCC
T ss_pred HHHHHHHHHhCceEEEeccchHH-HHHHHHHHHHHhccccC-CcccccchhccCCcccCccCCCCccccCCCCCCCCcee
Confidence 34556666667799999999985 7764 55554321 23 2222 223321 222 34 56 49999987 678
Q ss_pred ccc
Q psy13464 480 TNL 482 (515)
Q Consensus 480 t~~ 482 (515)
.+.
T Consensus 220 ~L~ 222 (346)
T 3n9i_A 220 ELL 222 (346)
T ss_dssp BTT
T ss_pred cCC
Confidence 443
No 92
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=61.32 E-value=3.2 Score=44.31 Aligned_cols=53 Identities=9% Similarity=-0.100 Sum_probs=33.2
Q ss_pred eecccccCCccchhHHHHhhhcCCCCcccEEEEeeee-eeCC--Ccccccccc-eeccccc
Q psy13464 428 TGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL-RGTD--GTRRLRAAR-FITNLSG 484 (515)
Q Consensus 428 ~GG~DL~FPHHENEiAQsea~~g~~~~a~yWlH~G~v-~v~G--~KMSks~Gn-fit~~~l 484 (515)
-||+|+.+ |.+.-+-.++.. |.. -+ +-+|.-.| .++| +|||||.|| .|-+++-
T Consensus 308 pvG~DQ~~-~i~l~Rdla~r~-~~~-~p-~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~ 364 (477)
T 1r6t_A 308 PCAIDQDP-YFRMTRDVAPRI-GYP-KP-ALLHSTFFPALQGAQTKMSASDPNSSIFLTDT 364 (477)
T ss_dssp EEEGGGHH-HHHHHHHHGGGG-TCC-CC-EEEEECCCEETTEEEEECCTTSTTCCCBTTCC
T ss_pred eccccHHH-HHHHHHHHHHHh-CCC-Cc-eeeecccccCCCCCccccCCCCCCCceeecCC
Confidence 37999987 665444444444 322 22 23555554 6788 799999999 7754443
No 93
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=60.30 E-value=2.3 Score=48.48 Aligned_cols=58 Identities=9% Similarity=0.070 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHcCCCCCccccc---cc--ccHHHHHHHHHHHHHCCCeeeecCCcEEEeccC
Q psy13464 298 FNFRYELEYFESMEKFGVLPPTRATR---VS--EFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDS 358 (515)
Q Consensus 298 ~~~~y~~~F~edm~aLNI~~PD~~pR---aT--ehI~~iie~I~kLidnG~AYe~kdGsVYFDv~~ 358 (515)
+..+|.+.+.+.+++||+.. | +-| ++ +|...+++++.+|.++|++|+ ...-|+||...
T Consensus 117 ~~~~~~~~~~~q~~rlG~s~-D-w~r~~~T~d~~~~~~v~~~F~~L~~kGliYr-g~~~v~wcp~~ 179 (862)
T 1gax_A 117 WKEESGGTILKQLKRLGASA-D-WSREAFTMDEKRSRAVRYAFSRYYHEGLAYR-APRLVNWCPRC 179 (862)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-C-GGGCEETTSHHHHHHHHHHHHHHHTTSSEEE-ECCEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhCccc-c-CCCCcccCCHHHHHHHHHHHHHHHHCCCEEe-cccccccCCCc
Confidence 34459999999999999997 6 455 33 599999999999999999998 78889998765
No 94
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=58.32 E-value=2.8 Score=42.94 Aligned_cols=69 Identities=17% Similarity=0.056 Sum_probs=40.7
Q ss_pred chhhhhhcCCCceEeeecccccCCccch--hHHHHhhh-cCC--CCcc--cEEEEe--eee-ee-CC-Ccccccc---cc
Q psy13464 413 SAMASHFFGGQVDLHTGGIDLKFPHHEN--EEAQSCAF-HNQ--SQWV--NYWLHT--GHL-RG-TD-GTRRLRA---AR 477 (515)
Q Consensus 413 SAM~~~~lG~~~DIH~GG~DL~FPHHEN--EiAQsea~-~g~--~~~a--~yWlH~--G~v-~v-~G-~KMSks~---Gn 477 (515)
.-|+.+.+-..-|+--||.|+.+ |+|. |+|+---. +|. +.++ .-.++. ..| .+ +| +|||||. ||
T Consensus 133 ~lQaaDil~~~ad~vpvG~DQ~~-hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~ 211 (341)
T 3sz3_A 133 VLMAADILLYGAHQVPVGSDQKQ-HLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKN 211 (341)
T ss_dssp HHHHHHHHTTTCSEECCCGGGHH-HHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGG
T ss_pred HHHHHHHHHcCCCEEEeccchHH-HHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCC
Confidence 34566666667899999999987 7764 55554321 231 1222 223331 122 34 46 6999999 88
Q ss_pred eeccc
Q psy13464 478 FITNL 482 (515)
Q Consensus 478 fit~~ 482 (515)
.|.+.
T Consensus 212 ~I~L~ 216 (341)
T 3sz3_A 212 VITLL 216 (341)
T ss_dssp CCBTT
T ss_pred eeecC
Confidence 99443
No 95
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=58.06 E-value=2.4 Score=46.25 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=28.1
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhH
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDK 179 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddK 179 (515)
.-.||||||+.+......+ +++.+++.+++|+|++
T Consensus 107 G~LHIGhaRtal~n~l~Ar------~~~G~~iLRieDtD~~ 141 (553)
T 3aii_A 107 GPLHIGHARAAILNHEYAR------KYDGRLILRIEDTDPR 141 (553)
T ss_dssp SSCBHHHHHHHHHHHHHHH------HTTCEEEEEECCCCGG
T ss_pred CCccHHHHHHHHHHHHHHH------HcCCEEEEEECcCCcc
Confidence 3579999999998554444 5788999999999986
No 96
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=52.90 E-value=3.3 Score=45.20 Aligned_cols=36 Identities=14% Similarity=-0.074 Sum_probs=28.4
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhHH
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKI 180 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddKi 180 (515)
.-.||||||+.+....+-| +++-+++.+++|+|++.
T Consensus 37 G~LHIGhaRtal~n~l~Ar------~~gG~fiLRieDTD~~R 72 (553)
T 1qtq_A 37 GYLHIGHAKSICLNFGIAQ------DYKGQCNLRFDDTNPVK 72 (553)
T ss_dssp SCCBHHHHHHHHHHHHHHH------HTTCEEEEEECCCCGGG
T ss_pred CCccHHHHHHHHHHHHHHH------HcCCEEEEEECCCCchh
Confidence 3589999999988665544 56778999999988753
No 97
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=45.70 E-value=4.6 Score=46.24 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=28.0
Q ss_pred cccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhH
Q psy13464 139 SIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDK 179 (515)
Q Consensus 139 ~~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddK 179 (515)
.-.||||||+.+..-.+-| +++.+++.+++|+|++
T Consensus 77 G~LHIGhARtAL~n~l~Ar------~~gG~fiLRIEDTD~~ 111 (851)
T 2hz7_A 77 GYAHLGHVFASLLDFNTAR------QYGGQFNLRMDDTNPE 111 (851)
T ss_dssp SCCBHHHHHHHHHHHHHHH------HTTCEEEEEECCCCTT
T ss_pred CCccHHHHHHHHHHHHHHH------HcCCEEEEEECcCCcc
Confidence 3579999999998654444 4688999999999876
No 98
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=45.63 E-value=5 Score=40.18 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=25.1
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhH
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDK 179 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddK 179 (515)
..||||||+.+.--. ..-+++.+++.+++|+|++
T Consensus 17 ~LHiG~~rtal~n~l------~Ar~~~g~~ilRieDtD~~ 50 (298)
T 1nzj_A 17 ELHFGSLIAALGSYL------QARARQGRWLVRIEDIDPP 50 (298)
T ss_dssp CCCHHHHHHHHHHHH------HHHHTTCEEEEEECCSCGG
T ss_pred CccHHHHHHHHHHHH------HHHhcCCeEEEEEecCCch
Confidence 479999998883222 2234577999999999886
No 99
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=45.21 E-value=8.1 Score=39.87 Aligned_cols=53 Identities=8% Similarity=-0.184 Sum_probs=29.7
Q ss_pred EeeecccccCCccchhHHHHhhhc---CCCCcccEEEEeeee-eeCCCccccccc-ceecc
Q psy13464 426 LHTGGIDLKFPHHENEEAQSCAFH---NQSQWVNYWLHTGHL-RGTDGTRRLRAA-RFITN 481 (515)
Q Consensus 426 IH~GG~DL~FPHHENEiAQsea~~---g~~~~a~yWlH~G~v-~v~G~KMSks~G-nfit~ 481 (515)
+--.|+|+.+ |.|--+-.+.-.. +....+ -+|.-++ -++|.|||||.+ |.|.+
T Consensus 211 ~VPVG~DQ~~-hleltRdiA~rfn~~~~~~~P~--~~~~~~~pgldG~KmS~S~~ns~I~l 268 (372)
T 3a04_A 211 VVPVGADQDP-HLRLTRDLADRMAGVVELERPA--STYHKLQPGLDGRKMSSSRPDSTIFL 268 (372)
T ss_dssp EEEEEGGGHH-HHHHHHHHHHHTTTTSCCCCCE--EEEECCCBCTTSSBCCTTSGGGSCBT
T ss_pred ecccchhhHH-HHHHHHHHHHHhcCcccccChh--hhhhcccCCCCCCccCCCCCCccccc
Confidence 4444999986 8875433333332 211111 3343433 567899999985 56743
No 100
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=41.94 E-value=29 Score=36.37 Aligned_cols=62 Identities=19% Similarity=0.351 Sum_probs=35.8
Q ss_pred CCceeEEEcCCccCC-CCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCcc---------hHHHHHHHhhhhhhhh
Q psy13464 50 KNHLKWYACGPTVYD-SPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDID---------DKIINKANSLKEDYKT 118 (515)
Q Consensus 50 ~~~v~~y~cgptvyd-~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDiD---------DKIi~~A~~l~~~y~~ 118 (515)
++.+.+|+ |=.+-+ .+|||| ||.+..+++ |++..|..|... |+|.. ++|-+.+++...+|.+
T Consensus 99 ~~p~~vy~-G~~PTg~~lHLGh---~v~~~~~~~-lQ~~~g~~~~i~--IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA 170 (406)
T 3tze_A 99 NRPFYLYT-GRGPSSKTMHIGH---TIPFLLCKY-MQDAFKIRLVIQ--ITDDEKFLWKSMRLEDAMAYGRENIKDIVT 170 (406)
T ss_dssp TCCEEEEE-EECCCSSCCBGGG---HHHHHHHHH-HHHHHTCCEEEE--ECHHHHHHHSSCCHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEE-eeCCCCCcccHHH---HHHHHHHHH-HHHhcCCcEEEE--eeChHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45677774 433334 799999 666665555 665657665553 45531 3344455555555554
No 101
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=39.61 E-value=10 Score=40.26 Aligned_cols=35 Identities=23% Similarity=0.069 Sum_probs=28.5
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCc
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTD 175 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTD 175 (515)
..|+||+|+++.-|.+-|+++ +.|+++.-..=+-|
T Consensus 44 ~~h~gh~r~~~~gd~~~r~~~-~~G~~v~r~nyi~D 78 (464)
T 3fnr_A 44 PLHIGHARGAVFGDTLTRLAR-HLGYKFNTEYYVND 78 (464)
T ss_dssp SCBGGGHHHHHHHHHHHHHHH-HTTCEEEEEEEECC
T ss_pred CCccchhHHHHHHHHHHHHHH-HcCCceEEEeeeCC
Confidence 479999999999999999996 78888865544444
No 102
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=35.41 E-value=39 Score=35.17 Aligned_cols=62 Identities=19% Similarity=0.350 Sum_probs=36.8
Q ss_pred CCceeEEE-cCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCc---------chHHHHHHHhhhhhhhh
Q psy13464 50 KNHLKWYA-CGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDI---------DDKIINKANSLKEDYKT 118 (515)
Q Consensus 50 ~~~v~~y~-cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDi---------DDKIi~~A~~l~~~y~~ 118 (515)
++.+.+|+ .+||- +.+||||. |.+..+++ |++..|..|..+ |+|. -++|-+.+++...+|.+
T Consensus 76 ~~~~~vy~G~~PTg-~~lHLGh~---v~~~~~~~-lQ~~~~~~v~i~--I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA 147 (395)
T 3i05_A 76 GQPFYLYTGRGPSS-ESMHMGHL---IPFMFTKW-LQDSFRVPLVIQ--MTDDEKFYFRNIPMEQVEAMTTENIKDIIA 147 (395)
T ss_dssp TCCEEEEEEECCCS-SCCBGGGS---HHHHHHHH-HHHHHTCCEEEE--ECHHHHHHHSCCCHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEeecCCC-ccchHHHH---HHHHHHHH-HHHhcCCcEEEE--EcchHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 44566664 24552 37999995 66665655 665667777766 5554 13344455556666654
No 103
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=33.74 E-value=56 Score=32.56 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCCCCcccccccccHHHHHHHHHHHHHCCCeee
Q psy13464 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYI 346 (515)
Q Consensus 302 y~~~F~edm~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~AYe 346 (515)
..+.+.++|+.+|=-+ .--+-+--..|+..+++|.+.|-+-.
T Consensus 230 aa~~l~eele~~GpVr---~~dVE~Aq~~Iv~~~R~L~e~GeI~l 271 (279)
T 3pkr_A 230 AAEQFVEEMQYLGAVK---IKDVDVAQRKIIEIVQSLQEKGVIQT 271 (279)
T ss_dssp HHHHHHHHHHHTCSCC---HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 8899999999986322 22222344589999999999999876
No 104
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=33.62 E-value=30 Score=36.00 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=28.0
Q ss_pred CCceeEE-EcCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEc
Q psy13464 50 KNHLKWY-ACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISS 97 (515)
Q Consensus 50 ~~~v~~y-~cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~N 97 (515)
++.+.+| -.+|| +.+||||.-.+ -. .|+|++..|.+|.+...
T Consensus 71 ~~p~~i~sG~~PT--G~lHLGh~v~~---~~-~~~lQ~~~g~~~~i~Ia 113 (392)
T 3jxe_A 71 GRGFFLYTGRGPS--GPMHIGHIIPF---FA-TKWLQEKFGVNLYIQIT 113 (392)
T ss_dssp TCCCEEEEEECCS--SCCBHHHHHHH---HH-HHHHHHHHCCEEEEEEC
T ss_pred CCCeEEEeccCCC--CchhHHHHHHH---HH-HHHHHHhcCCceEEEec
Confidence 4556666 45799 69999995543 33 45577546887777643
No 105
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=33.30 E-value=37 Score=36.07 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=36.6
Q ss_pred CCceeEEEcCCccC-CCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEccCCc----------chHHHHHHHhhhhhhhh
Q psy13464 50 KNHLKWYACGPTVY-DSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDI----------DDKIINKANSLKEDYKT 118 (515)
Q Consensus 50 ~~~v~~y~cgptvy-d~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~NiTDi----------DDKIi~~A~~l~~~y~~ 118 (515)
++.+.+|+ |=.+- +.+|||| ||.+-.+++ |++..|..|.+. |+|. -++|-+.+++..++|.+
T Consensus 89 g~p~~vyt-G~dPTagsLHLGH---~v~~~~l~~-lQ~~~g~~v~I~--IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA 161 (451)
T 3foc_A 89 GHPIYIYT-GRGPSSGALHLGH---LLPFIFTKY-LQDAFKCYVVIQ--ITDDEKFLRNRSLSYAEVDSYTRENIKDIIA 161 (451)
T ss_dssp TCCEEEEE-EECCCSSCCBHHH---HHHHHHHHH-HHHHHTCEEEEE--ECHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEe-cCCCCCCCccHHH---HHHHHHHHH-HHHccCceEEEE--eeCcHHhhcccCCCHHHHHHHHHHHHHHHHH
Confidence 45567764 54444 7899999 666666666 554656666553 6664 13344445555555554
No 106
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=32.54 E-value=26 Score=35.05 Aligned_cols=63 Identities=16% Similarity=0.313 Sum_probs=36.7
Q ss_pred CCceeEEE-cCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEE-ccCCc---c---hHHHHHHHhhhhhhhhh
Q psy13464 50 KNHLKWYA-CGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVIS-SVTDI---D---DKIINKANSLKEDYKTV 119 (515)
Q Consensus 50 ~~~v~~y~-cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~-NiTDi---D---DKIi~~A~~l~~~y~~~ 119 (515)
+++..+|+ ..|| +.+|||| ++.+-.++++.+ .|+++.+.. +.|.. . ++|-+.+++...+|.+.
T Consensus 26 ~~~~~vy~G~~PT--g~lHlGh---l~~l~~~~~lQ~--~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~ 96 (314)
T 2zp1_A 26 KDEKSAYIGFEPS--GKIHLGH---YLQIKKMIDLQN--AGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAM 96 (314)
T ss_dssp SSSEEEEEEECCC--SSCBHHH---HHHHHHHHHHHH--TTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEccCCC--CCcchhh---HHHHHHHHHHHH--CCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34455554 4688 4799999 555556666654 588887776 32221 1 34555555555555544
No 107
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=30.74 E-value=43 Score=34.08 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=26.1
Q ss_pred CceeEEE-cCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEc
Q psy13464 51 NHLKWYA-CGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISS 97 (515)
Q Consensus 51 ~~v~~y~-cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~N 97 (515)
+....|+ .+|| +.+|||| .++.+-.++++.+ .|+++.+..+
T Consensus 39 ~~~~vy~G~~PT--g~lHlGh--yl~~l~~~~~lQ~--~G~~~~~~i~ 80 (348)
T 2j5b_A 39 RIFTAYNGFEPS--GRIHIAQ--ALITVMNTNNMIE--CGGQMIIYIA 80 (348)
T ss_dssp CCEEEEEEECCC--SSCBHHH--HHHHHHHHHHHHH--TTEEEEEEEC
T ss_pred CCCEEEeccCCC--CCCchhH--HHHHHHHHHHHHH--cCCcEEEEec
Confidence 3455553 4688 7999999 2244555555554 5888777654
No 108
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=25.98 E-value=65 Score=33.88 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=27.7
Q ss_pred CCceeEEE-cCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEc
Q psy13464 50 KNHLKWYA-CGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISS 97 (515)
Q Consensus 50 ~~~v~~y~-cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~N 97 (515)
++.+++|+ ..||- +++|||| ||.+-.++++.+ .|+++.+..+
T Consensus 35 ~~~~~vy~G~dPTg-~sLHlGh---~v~l~~l~~lQ~--~G~~~i~lIg 77 (432)
T 1h3f_A 35 GRPLTVKLGADPTR-PDLHLGH---AVVLRKMRQFQE--LGHKVVLIIG 77 (432)
T ss_dssp CSCCEEEEEECTTC-CSCBHHH---HHHHHHHHHHHH--TTCEEEEEEC
T ss_pred CCCcEEEEcccCCC-CCCchhh---HHHHHHHHHHHH--CCCCEEEEEc
Confidence 44566664 34664 4699999 556666777765 5888777654
No 109
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=25.88 E-value=1e+02 Score=30.73 Aligned_cols=62 Identities=18% Similarity=0.305 Sum_probs=34.7
Q ss_pred CceeEEE-cCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEcc-----CCc-c-hHHHHHHHhhhhhhhhh
Q psy13464 51 NHLKWYA-CGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSV-----TDI-D-DKIINKANSLKEDYKTV 119 (515)
Q Consensus 51 ~~v~~y~-cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~Ni-----TDi-D-DKIi~~A~~l~~~y~~~ 119 (515)
++..+|+ ..|| +.+||||. +.+-.+.++.+ .|+++.+...= .|- | +.+-..+++..++|.+.
T Consensus 31 ~~~~vy~G~~PT--g~lHlG~l---~~l~~~~~lq~--~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~ 100 (323)
T 2cyb_A 31 EKPRAYVGYEPS--GEIHLGHM---MTVQKLMDLQE--AGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIAL 100 (323)
T ss_dssp SCCEEEEEECCC--SCCBHHHH---HHHHHHHHHHH--TTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEECcCCC--CcchHHHH---HHHHHHHHHHH--CCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3445553 4577 58999985 34444444443 48887776631 121 2 24555555666666654
No 110
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=25.25 E-value=93 Score=28.21 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=54.7
Q ss_pred HHHHHHHhhhhchhhhhhc-ccccccCCCcc--cchhHhhhhhhhHHHHHhhccCCccccchhhhhhhhHHHHHHHHHHH
Q psy13464 234 DEFRDELLALGVQIKDQKC-EATWQFKDGKV--FSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESM 310 (515)
Q Consensus 234 ~e~~~~~~dil~~~LD~~~-~~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~F~edm 310 (515)
+||+..+++++..||=.+. |..|....|.- ...++... +|.|.-| +.++|...|...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------------Lr~vgde--le~~~~~~f~~m~ 62 (157)
T 4hw4_A 2 DELYRQSLEIISRYLREQATGAKDTKPMGRSGATSRKALET-----------------LRRVGDG--VQRNHETAFQGML 62 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCCCSCCCSSHHHHHHHHHH-----------------HHHHHHH--HHHHTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCccccCCCCCCCCchHHHHHH-----------------HHHHHHH--HHHHHHHHHHHHH
Confidence 4789999999999988775 99887665432 12233322 2222222 4567888888999
Q ss_pred HHcCCCCCcccccccccHHHHHHHHHHHHHCCC
Q psy13464 311 EKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQ 343 (515)
Q Consensus 311 ~aLNI~~PD~~pRaTehI~~iie~I~kLidnG~ 343 (515)
..|+|.+.+ -......+.++|.+.|.
T Consensus 63 ~~L~it~~~-------a~~~F~~Va~elF~dGi 88 (157)
T 4hw4_A 63 RKLDIKNED-------DVKSLSRVMIHVFSDGV 88 (157)
T ss_dssp HHHCCCSHH-------HHHHHHHHHHHHGGGSC
T ss_pred HhcCCCCch-------HHHHHHHHHHHHhccCC
Confidence 999998622 23346667777776665
No 111
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=24.88 E-value=62 Score=33.64 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=25.7
Q ss_pred CCceeEEEcCCccC-CCCCCcchhhHHHHHHHHHHHHHhCCCcEEE
Q psy13464 50 KNHLKWYACGPTVY-DSPHIGHAVCNVKLDIIRRILEHYFHIHSIV 94 (515)
Q Consensus 50 ~~~v~~y~cgptvy-d~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~ 94 (515)
++.+..| ||=.+= +++|||| ||.+..+++ |++..|..|.+
T Consensus 72 g~~~~vy-~G~~PTa~~lHlGh---~v~~~~~~~-lQ~~~~~~v~i 112 (393)
T 3hv0_A 72 GELFYLY-TGRGPSSESLHVGH---LVPFLFTKY-LQDTFKVPLVI 112 (393)
T ss_dssp TCCCEEE-EEECCSSSSCBSTT---HHHHHHHHH-HHHHHCCCEEE
T ss_pred CCCeEEE-eCCCCCCCCccHHH---HHHHHHHHH-HHHhcCCCeEe
Confidence 3456776 454444 6799999 666666666 55466777665
No 112
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=24.50 E-value=18 Score=38.81 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=26.0
Q ss_pred ccccCccchhhHHHHHHHHHHHHHhhhcccccccCcchhH
Q psy13464 140 IPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDK 179 (515)
Q Consensus 140 ~~~~ghar~~~~~divrrile~Yfg~~l~~v~niTDiddK 179 (515)
-.||||||+.+.....-| +++-+++.+++|+|.+
T Consensus 37 ~lHiG~~rtal~n~l~Ar------~~~G~filRieDtD~~ 70 (490)
T 4g6z_A 37 FIHLGNIRSALYPWAFAR------KMKGTFVLRIEDTDVE 70 (490)
T ss_dssp CCBHHHHHHHHHHHHHHH------HTTCEEEEEECCCCGG
T ss_pred CccHHHHHHHHHHHHHHH------hcCCeEEEEeCCCCcc
Confidence 479999999998655444 3566888889888874
No 113
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=23.96 E-value=71 Score=32.80 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=25.6
Q ss_pred CCceeEEE-cCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEE
Q psy13464 50 KNHLKWYA-CGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVIS 96 (515)
Q Consensus 50 ~~~v~~y~-cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~ 96 (515)
+++..+|+ .+|| +.+||||. |.+-- .+++++ .|+++.+..
T Consensus 68 gk~~~v~sG~~PT--G~lHLGhy---v~~~~-~~~lq~-~~~~~~~~I 108 (372)
T 3a04_A 68 GERVAVLTGFMPS--GKFHFGHK---LTVDQ-LIYLQK-NGFKVFVAI 108 (372)
T ss_dssp TCCCEEEEEECCC--SCCBHHHH---HHHHH-HHHHHH-TTCEEEEEE
T ss_pred CCCCEEEeCcCCC--cHhHHHHH---HHHHH-HHHHHh-CCCeEEEEE
Confidence 34556665 6787 57999995 44433 445553 589987653
No 114
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=23.78 E-value=20 Score=24.91 Aligned_cols=12 Identities=50% Similarity=0.969 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCC
Q psy13464 496 GRTGPRCPNPSG 507 (515)
Q Consensus 496 ~~~~~~~~~~~~ 507 (515)
+.-|-|||||..
T Consensus 5 ielgercpnpre 16 (36)
T 4b2u_A 5 IELGERCPNPRE 16 (36)
T ss_dssp CCTTSBCCCGGG
T ss_pred eeccccCcCCCc
Confidence 346889999953
No 115
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=22.65 E-value=89 Score=31.90 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=26.7
Q ss_pred CceeEEE-cCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEc
Q psy13464 51 NHLKWYA-CGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISS 97 (515)
Q Consensus 51 ~~v~~y~-cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~N 97 (515)
++.+.|+ ..|| +.+|||| ++.+--++++.+ .|+++.+...
T Consensus 34 ~~~~iy~G~~PT--g~lHlG~---l~~l~~~~~lQ~--~G~~~~~~ia 74 (364)
T 2cya_A 34 ARIKGYIGYEPS--GVAHIGW---LVWMYKVKDLVE--AGVDFSVLEA 74 (364)
T ss_dssp SCCEEEEEECCC--SSCBTHH---HHHHHHHHHHHH--TTCEEEEEEC
T ss_pred CCCEEEeccCCC--CCccHhH---HHHHHHHHHHHH--CCCCEEEEEe
Confidence 3455553 5688 5799999 556666666655 5888877654
No 116
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=22.16 E-value=92 Score=31.20 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=26.7
Q ss_pred ceeEEE-cCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEc
Q psy13464 52 HLKWYA-CGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISS 97 (515)
Q Consensus 52 ~v~~y~-cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~N 97 (515)
.+.+|+ ..||- .++|||| ||.+-.++++.+ .|+++.++..
T Consensus 33 ~~~vy~G~~PTg-~slHlGh---~l~l~~~~~lQ~--~g~~~~~~i~ 73 (322)
T 2yxn_A 33 PIALVCGFDPTA-DSLHLGH---LVPLLCLKRFQQ--AGHKPVALVG 73 (322)
T ss_dssp CCEEEEEECCSS-SSCBHHH---HHHHHHHHHHHH--TTCEEEEEEC
T ss_pred CCEEEEeecCCC-CcccHHH---HHHHHHHHHHHH--cCCcEEEEEc
Confidence 345543 45773 4499999 556666666654 5898888876
No 117
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=20.78 E-value=69 Score=32.24 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=31.6
Q ss_pred cCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEcc----C-Ccch-HHHHHHHhhhhhhhhh
Q psy13464 58 CGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSV----T-DIDD-KIINKANSLKEDYKTV 119 (515)
Q Consensus 58 cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~Ni----T-DiDD-KIi~~A~~l~~~y~~~ 119 (515)
..|| +.+||||....+ .-.+.|+ .|+++.+...= | ..|. ++-+.+++..++|.+.
T Consensus 8 ~~PT--G~lHlGn~vg~l---~~~~~lQ--~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~ 68 (328)
T 1i6k_A 8 IQPS--GVITIGNYIGAL---RQFVELQ--HEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAV 68 (328)
T ss_dssp ECCC--SCCBHHHHHHTH---HHHHHHT--TTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred eCCC--CcccHHHHHHHH---HHHHHHH--cCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHh
Confidence 4588 699999977544 1222345 38888766541 2 2232 4444555666666654
No 118
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=20.63 E-value=1.2e+02 Score=31.26 Aligned_cols=40 Identities=30% Similarity=0.417 Sum_probs=25.9
Q ss_pred CceeEEE-cCCccCCCCCCcchhhHHHHHHHHHHHHHhCCCcEEEEEc
Q psy13464 51 NHLKWYA-CGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISS 97 (515)
Q Consensus 51 ~~v~~y~-cgptvyd~~HiGhaR~~v~~Dvl~R~L~~~~G~~V~~V~N 97 (515)
+.+++|+ ..|| +.+||||.+. +-.+.++++ .|+++.+...
T Consensus 38 ~p~~vy~G~~PT--G~LHlG~~~~---al~~~~~~q--~g~~~ii~I~ 78 (394)
T 2dlc_X 38 RHLKLYWGTAPT--GRPHCGYFVP---MTKLADFLK--AGCEVTVLLA 78 (394)
T ss_dssp SCCEEEEEECCC--SCCBGGGHHH---HHHHHHHHH--TTCEEEEEEC
T ss_pred CCeEEEEEeCCC--CCccHHHHHH---HHHHHHHHH--cCCcEEEEEc
Confidence 3445553 4687 4999999654 445666676 5777766544
No 119
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=20.20 E-value=64 Score=28.55 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=25.8
Q ss_pred ccccHHHHH-HHHHHHHHCCCeeeecC---CcEEEeccCCC
Q psy13464 324 VSEFIPHIQ-SFIQTLLDTKQAYIGSD---HSVYFDVDSFP 360 (515)
Q Consensus 324 aTehI~~ii-e~I~kLidnG~AYe~kd---GsVYFDv~~~~ 360 (515)
++..|..|. +.|+.|+++|+.|. ++ .+|||=++..+
T Consensus 72 tSk~i~sifKeAi~~Lqe~G~Vfq-K~~~~d~lYyVT~qDK 111 (120)
T 1wj5_A 72 TSGVAQRVFKNALQLLQEKGLVFQ-RDSGSDKLYYVTTKDK 111 (120)
T ss_dssp SCHHHHHHHHHHHHHHHHHTSEEC-SSCSSSCCBEECSSSC
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEe-ccCCccceEEeeccch
Confidence 345666655 99999999999998 55 34898544433
Done!