RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13464
(515 letters)
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 261 bits (669), Expect = 1e-81
Identities = 89/172 (51%), Positives = 105/172 (61%), Gaps = 9/172 (5%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
RY + E M+ VLPP R +E IP I I+ L+D AY +D VYFDV FP
Sbjct: 92 RYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYE-ADGDVYFDVRKFP 150
Query: 361 HYFKLWGRN--ENITQHAV-----KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413
Y KL GRN E V KR P DFALWK+AKPGEP +ES WGKGRPGWHIECS
Sbjct: 151 DYGKLSGRNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECS 210
Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
AM++ + G D+H GG DL FPHHENE AQS A + + NYW+H G +
Sbjct: 211 AMSTKYLGETFDIHGGGADLIFPHHENEIAQSEAATGK-PFANYWMHNGFVT 261
Score = 108 bits (273), Expect = 2e-25
Identities = 41/94 (43%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEH--YFH 89
+KIYN +T+ K F +K Y CGPTVYD HIGHA V D++RR L + Y
Sbjct: 3 LKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGY-- 60
Query: 90 IHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
+ ++TDIDDKII +AN E K + +RY
Sbjct: 61 -KVTYVRNITDIDDKIIKRANEEGESIKELTERY 93
Score = 55.1 bits (134), Expect = 4e-08
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 144 GHAVCNVKLDIIRRILEH--YFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GHA V D++RR L + Y + ++TDIDDKII +AN E K + +RY
Sbjct: 40 GHARSFVVFDVLRRYLRYLGY---KVTYVRNITDIDDKIIKRANEEGESIKELTERY 93
Score = 33.9 bits (79), Expect = 0.22
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 234 DEFRDELLALGVQIKDQKCEATW 256
D RDEL ALG+ ++D TW
Sbjct: 438 DAIRDELAALGIVLEDTPDGTTW 460
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 253 bits (648), Expect = 1e-78
Identities = 83/174 (47%), Positives = 104/174 (59%), Gaps = 10/174 (5%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
RY +FE M+ VLPP R +E I I FI+ L++ AY+ D VYFDV F
Sbjct: 91 RYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFK 150
Query: 361 HYFKLWGRNENITQHAV---------KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIE 411
Y KL GR+ ++ + KR+P DF LWK+AKPGEP ++S WGKGRPGWHIE
Sbjct: 151 DYGKLSGRD-SLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIE 209
Query: 412 CSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
CSAM++ + G D+H GG DL FPHHENE AQS A + YW+H G L
Sbjct: 210 CSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLN 263
Score = 113 bits (285), Expect = 5e-27
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 5/96 (5%)
Query: 31 GIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFH- 89
+K+YN +T+ K F+ + +K Y CGPTVYD HIGHA V D++RR L + +
Sbjct: 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYK 60
Query: 90 -IHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYF 124
+ + ++TDIDDKIIN+A + VA+RY
Sbjct: 61 VTY---VRNITDIDDKIINRAREEGLSIREVAERYI 93
Score = 56.9 bits (138), Expect = 1e-08
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 144 GHAVCNVKLDIIRRILEHYFH--IHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYF 199
GHA V D++RR L + + + + ++TDIDDKIIN+A + VA+RY
Sbjct: 39 GHARTYVVFDVLRRYLRYLGYKVTY---VRNITDIDDKIINRAREEGLSIREVAERYI 93
Score = 36.8 bits (86), Expect = 0.026
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 20/106 (18%)
Query: 164 HIHSIVISSVTDIDDKIINKANSLKEDYKTVAKR---YFLRLIFKILHQ------KVVRK 214
+ + + + ++ + A ++ K + L L + Q + +
Sbjct: 363 VLFELA-KEINRLLEEGKSDAKAVLSALKALLAILGLKVLGLFPQSGAQEDESDDEEIEA 421
Query: 215 LAID----LKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATW 256
L I+ +KAK DE RDELLALG+ ++D TW
Sbjct: 422 L-IEERLEARKAKN-----WALADEIRDELLALGIILEDTPDGTTW 461
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 245 bits (628), Expect = 8e-74
Identities = 96/180 (53%), Positives = 121/180 (67%), Gaps = 17/180 (9%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSF- 359
++E E+FE M+ V PP TRVSE++P I FIQ ++D AY S+ SVYFDV++F
Sbjct: 131 KWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYE-SNGSVYFDVEAFR 189
Query: 360 --PH-YFKLW------------GRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKG 404
H Y KL G KRSP DFALWK++KPGEP ++S WGKG
Sbjct: 190 KAGHVYPKLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKG 249
Query: 405 RPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
RPGWHIECSAMAS+ G +D+H+GGIDLKFPHH+NE AQS A+ ++ QWVNY+LH+GHL
Sbjct: 250 RPGWHIECSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHL 309
Score = 135 bits (342), Expect = 7e-34
Identities = 50/108 (46%), Positives = 67/108 (62%), Gaps = 4/108 (3%)
Query: 20 PKWSLPSG---YDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVK 76
P+W PS Y TG+K+ N +T KV F+ QN ++WY CGPTVYDS H+GHA V
Sbjct: 25 PEWKKPSKEGKYLTGLKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVT 84
Query: 77 LDIIRRILEHYFHIHSIVISSVTDIDDKIINKAN-SLKEDYKTVAKRY 123
DIIRRILE YF + ++TDIDDKII +A + +A+++
Sbjct: 85 FDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKW 132
Score = 63.9 bits (156), Expect = 1e-10
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLI 203
GHA V DIIRRILE YF + ++TDIDDKII +A K R + +
Sbjct: 77 GHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEF 136
Query: 204 FKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKD 249
F+ D+K V V+T+ E+ E++ +I D
Sbjct: 137 FE------------DMKALNVRPPDVITRVSEYVPEIVDFIQKIID 170
Score = 34.2 bits (79), Expect = 0.16
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 212 VRKLAIDLKKAKVDSGP---VLTKCDEFRDE-LLALGVQIKDQK-CEATWQFKD 260
VR A K +L CD+ RDE L LG++I+D+ + W+ D
Sbjct: 496 VRDAAKAEMKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKLDD 549
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 234 bits (598), Expect = 3e-73
Identities = 91/172 (52%), Positives = 110/172 (63%), Gaps = 8/172 (4%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
R+ Y + M+ VLPP RV+E I I FI+ L+ AY+ + VYFDV SFP
Sbjct: 78 RFITAYTKDMDALNVLPPDLEPRVTEHIDEIIEFIERLIKKGYAYVSDNGDVYFDVSSFP 137
Query: 361 HYFKLWGRN-ENITQHA------VKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413
Y KL G+N E + A KR P DFALWK++K GEP ++S WGKGRPGWHIECS
Sbjct: 138 DYGKLSGQNLEQLEAGARGEVGEGKRDPLDFALWKASKEGEPSWDSPWGKGRPGWHIECS 197
Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
AMA + G Q+D+H GG+DLKFPHHENE AQS A +Q Q YWLH GHL
Sbjct: 198 AMARKYLGSQIDIHGGGVDLKFPHHENEIAQSEAAFDQ-QLAKYWLHNGHLM 248
Score = 86.6 bits (215), Expect = 9e-19
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 44 PFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDD 103
F+ ++ + Y CGPTVYD HIGHA V D++RR L+ + + TDIDD
Sbjct: 1 FFVPLHQGKVNMYVCGPTVYDDSHIGHARSAVAFDVLRRYLQ-ALGYDVQFVQNFTDIDD 59
Query: 104 KIINKANSLKEDYKTVAKRY 123
KII +A E ++ +A R+
Sbjct: 60 KIIKRAQQQGESFRELAARF 79
Score = 52.3 bits (126), Expect = 2e-07
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 128 IFKILHQKVVGSI---PT------RGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDD 178
F LHQ V PT GHA V D++RR L+ + + TDIDD
Sbjct: 1 FFVPLHQGKVNMYVCGPTVYDDSHIGHARSAVAFDVLRRYLQ-ALGYDVQFVQNFTDIDD 59
Query: 179 KIINKANSLKEDYKTVAKRY 198
KII +A E ++ +A R+
Sbjct: 60 KIIKRAQQQGESFRELAARF 79
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 225 bits (575), Expect = 7e-68
Identities = 80/173 (46%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 300 FRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSF 359
R+ YFE M+ VLPP R +E I I FI+ L++ AY+ + VYFDV F
Sbjct: 89 ERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF 148
Query: 360 PHYFKLWGRN-------ENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIEC 412
Y KL ++ + KR+ DF LWKS+K GEP ++S WGKGRPGWHIEC
Sbjct: 149 KDYGKLSKQDLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIEC 208
Query: 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
SAM + G Q+D+H GG+DL FPHHENE AQS A + Q YW+H G L
Sbjct: 209 SAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAFGK-QLAKYWMHNGFLM 260
Score = 96.3 bits (240), Expect = 2e-21
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+K+YN +T+ K F + +K Y CGPTVYD HIGHA + D++RR L Y
Sbjct: 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLR-YLGYK 59
Query: 92 SIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
+ ++TDIDDKII +A E V++R+
Sbjct: 60 VQYVQNITDIDDKIIKRARENGESVYEVSERF 91
Score = 47.4 bits (113), Expect = 1e-05
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 128 IFKILHQKVVGSI---PTR------GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDD 178
F+ L Q V PT GHA + D++RR L Y + ++TDIDD
Sbjct: 13 EFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLR-YLGYKVQYVQNITDIDD 71
Query: 179 KIINKANSLKEDYKTVAKRY 198
KII +A E V++R+
Sbjct: 72 KIIKRARENGESVYEVSERF 91
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 188 bits (480), Expect = 2e-53
Identities = 84/170 (49%), Positives = 106/170 (62%), Gaps = 11/170 (6%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAY-IGSDHSVYFDVDSF 359
RY E+ M LPP+ RVS+ IP I I+ +LD AY + D VYF VD F
Sbjct: 149 RYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGD--VYFSVDKF 206
Query: 360 PHYFKLWGRN-------ENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIEC 412
P Y KL GR E + + K++P DFALWK+AK GEP+++S WG GRPGWHIEC
Sbjct: 207 PEYGKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIEC 266
Query: 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTG 462
SAM++ + G D+H GG+DL FPHHENE AQSCA S ++YW+H G
Sbjct: 267 SAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACCDSN-ISYWIHNG 315
Score = 70.0 bits (171), Expect = 1e-12
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 25 PSGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRIL 84
P+ + +YN +++ K F + + + Y CG T YD HIGHA V D++ R L
Sbjct: 53 PASRGRELHLYNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYL 112
Query: 85 EHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
+H + V + TD+DDKII +AN L ED ++++RY
Sbjct: 113 KHLGYEVRYV-RNFTDVDDKIIARANELGEDPISLSRRY 150
Score = 46.1 bits (109), Expect = 3e-05
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GHA V D++ R L+H + V + TD+DDKII +AN L ED ++++RY
Sbjct: 97 GHARVYVTFDVLYRYLKHLGYEVRYV-RNFTDVDDKIIARANELGEDPISLSRRY 150
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 157 bits (399), Expect = 2e-41
Identities = 79/186 (42%), Positives = 104/186 (55%), Gaps = 23/186 (12%)
Query: 308 ESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWG 367
E + GVL P + +E IP + + I+TL+ +AY ++ VY+ V F Y +L G
Sbjct: 324 EDADALGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSG 383
Query: 368 RN-------ENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFF 420
++ E + KR P DF LWK+AK GEP +ES WG GRPGWHIECSAM+ + F
Sbjct: 384 KSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLF 443
Query: 421 GGQVDLHTGGIDLKFPHHENEEAQS-------CAFHNQ--------SQWVNYWLHTGHLR 465
G D+H GG DL+FPHHENE AQS C H+ + V YWLH G +R
Sbjct: 444 GDTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIR 503
Query: 466 GTDGTR 471
DG +
Sbjct: 504 -VDGEK 508
Score = 61.3 bits (148), Expect = 7e-10
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 34 IYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSI 93
IYN +T+ K PF + +++ Y CG TVYD H+GHA V D+I R L + +
Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTY 289
Query: 94 VISSVTDIDDKIINKANSLKEDYKTVAKRY 123
V ++TDIDDKII +A E + R+
Sbjct: 290 V-RNITDIDDKIIARAAENGETIGELTARF 318
Score = 29.3 bits (65), Expect = 5.4
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GHA V D+I R L + + V ++TDIDDKII +A E + R+
Sbjct: 265 GHARVMVVFDMIARWLRECGYPLTYV-RNITDIDDKIIARAAENGETIGELTARF 318
>gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.
Length = 384
Score = 136 bits (345), Expect = 1e-35
Identities = 72/201 (35%), Positives = 98/201 (48%), Gaps = 28/201 (13%)
Query: 303 ELEYF-ESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYI---GSDHSVYFDVDS 358
E+ F E ME VLPP E IP + ++ LL + AY+ VYF VD+
Sbjct: 79 EIALFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA 138
Query: 359 FPH--YFKLWGRNENIT---------QHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPG 407
P Y + R + KR P D LW++A+PGEP + S +G GRPG
Sbjct: 139 TPQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPG 198
Query: 408 WHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGT 467
WHIECSA+A + G D+ GG DL FPHHE A + A + ++ +++H G + G
Sbjct: 199 WHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAG-MIGL 257
Query: 468 DGTR------------RLRAA 476
DG + RLRAA
Sbjct: 258 DGEKMSKSRGNLVFVSRLRAA 278
Score = 49.5 bits (119), Expect = 2e-06
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 13/73 (17%)
Query: 56 YACGPTVYDSPHIGHAVCNVKLDIIRRILE------HYFHIHSIVISSVTDIDDKIINKA 109
Y CG T YD+ H+GHA + D++ R+ HY + +VTD+DD ++ +A
Sbjct: 13 YVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHY-------VQNVTDVDDPLLERA 65
Query: 110 NSLKEDYKTVAKR 122
D++ +A+R
Sbjct: 66 ARDGVDWRDLAER 78
Score = 28.7 bits (65), Expect = 7.9
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 13/60 (21%)
Query: 144 GHAVCNVKLDIIRRILE------HYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKR 197
GHA + D++ R+ HY + +VTD+DD ++ +A D++ +A+R
Sbjct: 26 GHAATYLAFDLVNRVWRDAGHDVHY-------VQNVTDVDDPLLERAARDGVDWRDLAER 78
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members
of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last step
in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog to
glutathione [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 411
Score = 129 bits (327), Expect = 5e-33
Identities = 67/201 (33%), Positives = 96/201 (47%), Gaps = 28/201 (13%)
Query: 303 ELEYFES-MEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYI---GSDHSVYFDVDS 358
+++ F ME VLPP E I + ++ LL + AYI VYF +D+
Sbjct: 106 QIDLFREDMEALRVLPPRDYIGAVESIDEVVEMVEKLLASGAAYIVEGPEYPDVYFSIDA 165
Query: 359 FPH--YFKLWGRNENITQHAV---------KRSPFDFALWKSAKPGEPWYESAWGKGRPG 407
Y + R + A KR P D LW++A+ GEP ++S +G+GRPG
Sbjct: 166 TEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGRGRPG 225
Query: 408 WHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGT 467
WHIECSA+A + G D+ GG DL FPHHE A + A + +++H G + G
Sbjct: 226 WHIECSAIALNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAG-MIGL 284
Query: 468 DGTR------------RLRAA 476
DG + +LRAA
Sbjct: 285 DGEKMSKSLGNLVFVSKLRAA 305
Score = 50.9 bits (122), Expect = 9e-07
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 22/101 (21%)
Query: 28 YDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILE-- 85
+DT P+ + Y CG T YD+ H+GHA + D++ R+
Sbjct: 21 FDTADGQVRPVEPGPEAGM---------YVCGITPYDATHLGHAATYLTFDLVNRVWRDA 71
Query: 86 ----HYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKR 122
HY + +VTD+DD + +A D++ +
Sbjct: 72 GHRVHY-------VQNVTDVDDPLFERAERDGVDWRELGTS 105
Score = 30.5 bits (69), Expect = 2.3
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 144 GHAVCNVKLDIIRRILE------HYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKR 197
GHA + D++ R+ HY + +VTD+DD + +A D++ +
Sbjct: 53 GHAATYLTFDLVNRVWRDAGHRVHY-------VQNVTDVDDPLFERAERDGVDWRELGTS 105
>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 490
Score = 129 bits (326), Expect = 1e-32
Identities = 65/190 (34%), Positives = 86/190 (45%), Gaps = 14/190 (7%)
Query: 302 YELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPH 361
Y +F + + P+ +E I + + I+ L Y +VYFD+ +FP
Sbjct: 103 YTAAFFRDTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGG-NVYFDIRTFPS 161
Query: 362 YFKLWGRNENITQHAV-------KRSPFDFALW----KSAKPGEPWYESAWGKGRPGWHI 410
Y L Q KR+P DF LW K W +S WG+G PGWHI
Sbjct: 162 YGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTW-DSPWGRGYPGWHI 220
Query: 411 ECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGT 470
ECSAM+ + G Q D+H GG+D HH NE AQ A + WV YWLH L G
Sbjct: 221 ECSAMSMKYLGEQCDIHIGGVDHIRVHHTNEIAQCEAATGK-PWVRYWLHHEFLLMNKGK 279
Query: 471 RRLRAARFIT 480
A +F+T
Sbjct: 280 MSKSAGQFLT 289
Score = 54.5 bits (131), Expect = 7e-08
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+++YN + + + F H++ Y CGPTVY+ HIG+ V D +RR L H+
Sbjct: 3 LRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTL-HFLGYR 61
Query: 92 SIVISSVTDI----------DDKIINKANSLKEDYKTVAKRY 123
+ ++TD+ +DK++ A + +A Y
Sbjct: 62 VTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHY 103
Score = 29.5 bits (66), Expect = 4.3
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 11/57 (19%)
Query: 201 RLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQ 257
I +++ + + D A DE RD+L A G++++D W+
Sbjct: 443 EEIGQLIEARAHARQTKDFPLA-----------DEIRDKLKAEGIELEDTHLGTIWK 488
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 116 bits (293), Expect = 4e-30
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 33 KIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHS 92
++YN +T+ K F+ N + Y CGPTVYD HIGHA V D++RR LE +
Sbjct: 1 RLYNTLTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLG--YK 58
Query: 93 IV-ISSVTDIDDKIINKANSLKEDYKTVAKRYF 124
+ + ++TDIDDKII +A +K VA Y
Sbjct: 59 VRYVQNITDIDDKIIKRAREEGLSWKEVADYYT 91
Score = 114 bits (289), Expect = 2e-29
Identities = 35/58 (60%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 408 WHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
WHIECSAMA + G D+H GG+DL FPHHENE AQS A + + YWLHTGHL
Sbjct: 113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAATGK-PFARYWLHTGHLT 169
Score = 58.7 bits (143), Expect = 6e-10
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIV-ISSVTDIDDKIINKANSLKEDYKTVAKRYF 199
GHA V D++RR LE + + + ++TDIDDKII +A +K VA Y
Sbjct: 37 GHARTYVVFDVLRRYLEDLGY--KVRYVQNITDIDDKIIKRAREEGLSWKEVADYYT 91
Score = 30.6 bits (70), Expect = 1.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 301 RYELEYFESMEKFGVLPPTRATRV 324
Y E+FE M+ VLPP RV
Sbjct: 89 YYTKEFFEDMKALNVLPPDVVPRV 112
>gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 481
Score = 86.1 bits (213), Expect = 7e-18
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 306 YFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKL 365
+F+ +K ++ P + SE+IP + ++ L + Y + +VYFD F Y ++
Sbjct: 105 FFDDCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYF-VNGNVYFDTSCFKSYGQM 163
Query: 366 WGRNEN-ITQHAV--------KRSPFDFALW---KSAKPGEPWYESAWGKGRPGWHIECS 413
G N N +V KR+ DF LW K E ++S WG G P WH+EC+
Sbjct: 164 AGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECA 223
Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLH 460
AM +F +D+H GG+D HH NE A + + N+ +W + ++H
Sbjct: 224 AMNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYLNK-KWCDMFVH 269
Score = 41.8 bits (98), Expect = 7e-04
Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGH 70
+K+YN TKTK ++N + +K YACGPTVY+ HIG+
Sbjct: 3 LKLYN--TKTKDLSELKNFSDVKVYACGPTVYNYAHIGN 39
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 39.4 bits (92), Expect = 0.001
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 407 GWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRG 466
+ +A + + D+H GG D H E + + L G + G
Sbjct: 77 EYMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPA--RPFGLTFGRVMG 133
Query: 467 TDGTR 471
DGT+
Sbjct: 134 ADGTK 138
Score = 38.6 bits (90), Expect = 0.001
Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 9/72 (12%)
Query: 56 YACGPTVYDSPHIGHAVCNVKLDIIRRILEH----YFHIHSIVISSVTDIDDKIINKANS 111
G T HIGH V D + + I I D I + AN
Sbjct: 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALI-----DDAGGLIGDPANK 56
Query: 112 LKEDYKTVAKRY 123
E+ K +R+
Sbjct: 57 KGENAKAFVERW 68
>gnl|CDD|187791 cd09660, Csx1_III-U, CRISPR/Cas system-associated protein Csx1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Protein of this family often fused to HTH domain; Some
proteins could have an additional fusion with
RecB-family nuclease domain; Core domain appears to have
a Rossmann-like fold; loosely associated with CRISPR/Cas
systems; also known as MJ1666 family.
Length = 394
Score = 36.2 bits (84), Expect = 0.036
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 103 DKIINKANSLKEDYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHY 162
K+ + KEDY T+ K YF L+ +IL + VKL+ I+++ E +
Sbjct: 259 PKVERSYVAFKEDYLTILKLYFHSLLLEILKFIDYKN---------EVKLEEIKKLAETF 309
Query: 163 F---HIHSIVISSVTDIDDKIINKANSLKEDYKTVAKR 197
F + ++I + D +K N + + + ++
Sbjct: 310 FDKIEVTRVIIENEVDKIEKGQNWSEKSELLARIYSEI 347
Score = 28.5 bits (64), Expect = 9.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 178 DKIINKANSLKEDYKTVAKRYFLRLIFKILHQKV 211
K+ + KEDY T+ K YF L+ +IL
Sbjct: 259 PKVERSYVAFKEDYLTILKLYFHSLLLEILKFID 292
>gnl|CDD|233626 TIGR01897, cas_MJ1666, CRISPR-associated protein, MJ1666 family.
CRISPR is a term for Clustered, Regularly Interspaced
Short Palidromic Repeats. A number of protein families
appear only in association with these repeats and are
designated Cas (CRISPR-Associated) proteins. This model
describes a Cas protein about 400 residues in length,
found mostly in the Archaea but also in Aquifex [Mobile
and extrachromosomal element functions, Other].
Length = 410
Score = 34.7 bits (80), Expect = 0.11
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 22/133 (16%)
Query: 74 NVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKA-NSLKEDYKTVAKRYFLPLIFKIL 132
+ L+ +RRI + D K + K L D+ T+ K YF LI ++L
Sbjct: 257 DSILEFLRRIK------------IGGEEDLKSLVKRELYLGRDFDTLLKAYFHSLILEVL 304
Query: 133 HQKVVGSIPTRGHAVCNVKLDIIRRILEHYF--HIHSIVISSVTDIDDKIINKANSLKED 190
K+ G+ P VKL+ I+++ E +F S+ I + + D I N++ +E
Sbjct: 305 --KIKGNSPKNE-----VKLEEIKKLAETFFDEEYISVYIEIIKNELDNIKNRSKKAEEL 357
Query: 191 YKTVAKRYFLRLI 203
A +
Sbjct: 358 ALIKATEIYKVSG 370
Score = 31.6 bits (72), Expect = 0.96
Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 9/151 (5%)
Query: 62 VYDS-PHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVA 120
+Y+S P+ +++ I R+ E I SI I + + K + ++
Sbjct: 164 LYNSDPYPKGVSKELRIHTIERVKE----IESIDIRPLPL-LSFVERKLLNKYKNNPKNI 218
Query: 121 KRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKI 180
R L + ++ + P LD+ + + + + D K
Sbjct: 219 GRKLLENFNIFI-SDIINATPLVFATAFPNGLDVELYLNDSILEFLRRIKI-GGEEDLKS 276
Query: 181 INKA-NSLKEDYKTVAKRYFLRLIFKILHQK 210
+ K L D+ T+ K YF LI ++L K
Sbjct: 277 LVKRELYLGRDFDTLLKAYFHSLILEVLKIK 307
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 31.4 bits (72), Expect = 1.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 60 PTVYDSPHIGHAVCNVKLDIIRR 82
PHIGHA + D++ R
Sbjct: 10 YYPNGKPHIGHAYTTLAADVLAR 32
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2. This
is a family of the conserved region of Leucine-tRNA
ligase or Leucyl-tRNA synthetase, EC:6.1.1.4.
Length = 178
Score = 30.1 bits (69), Expect = 1.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 27 GYDTGIKIYNPITKTKVP 44
G TG+ +PIT K+P
Sbjct: 75 GIFTGLYAIHPITGEKIP 92
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 30.0 bits (68), Expect = 3.8
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 154 IIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLI 203
+RRILE+YF + D D+++ K + +++ + LR I
Sbjct: 640 TMRRILENYFKFPGKI-----DNLDELLEKLDDIEDK---EICKSLLRYI 681
>gnl|CDD|190164 pfam01929, Ribosomal_L14e, Ribosomal protein L14. This family
includes the eukaryotic ribosomal protein L14.
Length = 73
Score = 27.1 bits (61), Expect = 4.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 387 WKSAKPGEPWYESAWGK 403
W+ A E W ES+W K
Sbjct: 31 WEKADVLEKWAESSWAK 47
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 29.7 bits (67), Expect = 5.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 26 SGYDTGIKIYNPITKTKVPFIIQN 49
G DTGIK +P+T K+P + N
Sbjct: 298 KGVDTGIKAIHPLTGEKIPIWVAN 321
>gnl|CDD|152193 pfam11757, RSS_P20, Suppressor of RNA silencing P21-like. This is
a large family of putative suppressors of RNA silencing
proteins, P20-P25, from ssRNA positive-strand viruses
such as Closterovirus, Potyvirus and Cucumovirus
families. RNA silencing is one of the major mechanisms
of defence against viruses, and, in response, some
viruses have evolved or acquired functions for
suppression of RNA silencing. These counter-defencive
viral proteins with RNA silencing suppressor (RSS)
activity were originally discovered in the members of
plant virus genera Potyvirus and Cucumovirus. Each of
the conserved blocks of amino acids found in P21-like
proteins corresponds to a computer-predicted
alpha-helix, with the most C-terminal element being 42
residues long. This suggests conservation of the
predominantly alpha-helical secondary structure in the
P21-like proteins.
Length = 137
Score = 28.3 bits (63), Expect = 5.6
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 146 AVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFK 205
A + LDIIRR + S TD + K +SL V +R K
Sbjct: 57 AKLRILLDIIRRRFTRD----KLGCRSATDTFGFFVMKYSSLSH----VPFSEVMRTKLK 108
Query: 206 ILHQKVVRKL 215
++ + V+ L
Sbjct: 109 LVVKAVISDL 118
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 28.7 bits (65), Expect = 5.7
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 93 IVISSVTDIDDKIINKANSLKEDYKTVAKRYF 124
++ SS+T D+++ L + + VA+ F
Sbjct: 146 LLQSSLTGE-DEVLEYLEKLGFEAEVVAEEKF 176
Score = 28.7 bits (65), Expect = 5.7
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 168 IVISSVTDIDDKIINKANSLKEDYKTVAKRYF 199
++ SS+T D+++ L + + VA+ F
Sbjct: 146 LLQSSLTGE-DEVLEYLEKLGFEAEVVAEEKF 176
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. MetRS, which consists of the core
domain and an anti-codon binding domain, functions as a
monomer. However, in some species the anti-codon
binding domain is followed by an EMAP domain. In this
case, MetRS functions as a homodimer. The core domain
is based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in
ATP binding. As a result of a deletion event, MetRS
has a significantly shorter core domain insertion than
IleRS, ValRS, and LeuR. Consequently, the MetRS
insertion lacks the editing function.
Length = 319
Score = 29.0 bits (66), Expect = 5.7
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 60 PTVYDSPHIGHAVCNVKLDIIRR 82
P V PH+GH V D+ R
Sbjct: 9 PYVNGVPHLGHLYGTVLADVFAR 31
>gnl|CDD|220775 pfam10479, FSA_C, Fragile site-associated protein C-terminus. This
is the conserved C-terminal half of the protein KIAA1109
which is the fragile site-associated protein FSA.
Genome-wide-association studies showed this protein to
linked to the susceptibility to coeliac disease. The
protein may also be associated with polycystic kidney
disease.
Length = 615
Score = 29.1 bits (65), Expect = 6.5
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 420 FGGQVDLHTGGIDLKFPHHENEEAQSCA-FHNQSQWVNYW 458
GG ++LH I L H N +A+S A FH + + +
Sbjct: 266 LGGTMELHGQNISLACFHGINFKAKSWALFHLREPCILFA 305
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 29.2 bits (66), Expect = 6.7
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 60 PTVYDSPHIGHAVCNVKLDIIRR 82
P PH+GH + D+ R
Sbjct: 14 PYPNGPPHLGHLYTYLAADVYAR 36
>gnl|CDD|225404 COG2848, COG2848, Uncharacterized conserved protein [Function
unknown].
Length = 445
Score = 29.0 bits (65), Expect = 7.1
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 13/67 (19%)
Query: 77 LDIIRRILEHYFHIHSIVIS-------------SVTDIDDKIINKANSLKEDYKTVAKRY 123
L+ I I E I +I I +I +KI KA L E + +
Sbjct: 7 LETIEMIEEQNLDIRAITIGISLLDCISSDIEELAENIYEKITTKALKLVETAEELTAEL 66
Query: 124 FLPLIFK 130
+P++ K
Sbjct: 67 GVPIVNK 73
>gnl|CDD|223988 COG1060, ThiH, Thiamine biosynthesis enzyme ThiH and related
uncharacterized enzymes [Coenzyme metabolism / General
function prediction only].
Length = 370
Score = 28.8 bits (65), Expect = 7.2
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 77 LDIIRRILEHYFHIHSIV---ISSVTDIDDKIINKANSLKEDYKTVAK-RYFLPLIFKI 131
L+ IR + + + + SL++D K +A R FL
Sbjct: 234 LEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISN 292
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 29.2 bits (66), Expect = 7.3
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 12 SYATSCESPKWSLPSGYDTGIKIYNPITKTKVPFIIQN 49
+ + K G G NP+ K+P I N
Sbjct: 297 VESVPAHAEK----DGVFLGGYAINPVNGEKIPVWIAN 330
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar
to be included.
Length = 606
Score = 28.9 bits (65), Expect = 7.5
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 11/54 (20%)
Query: 32 IKIYNP---ITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRR 82
+ K K F I + P HIGHA+ DI+ R
Sbjct: 9 QGYFKKSLENGKGKPSFTI--------HDGPPNATGLLHIGHALNKTLKDIVIR 54
>gnl|CDD|177511 PHA03061, PHA03061, putative DNA-binding virion core protein;
Provisional.
Length = 311
Score = 28.5 bits (64), Expect = 9.4
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 157 RILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLA 216
R L+ YF S + +I D+++ + K+ K+ AK+ R+ ++ V+K
Sbjct: 14 RALKAYF------TSKINEIVDELVTRKYPQKK--KSQAKKPETRIPVDLIKSDFVKKFK 65
Query: 217 ID 218
+D
Sbjct: 66 LD 67
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.435
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,594,937
Number of extensions: 2624410
Number of successful extensions: 2420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2379
Number of HSP's successfully gapped: 77
Length of query: 515
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 414
Effective length of database: 6,457,848
Effective search space: 2673549072
Effective search space used: 2673549072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.3 bits)