RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13464
(515 letters)
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 254 bits (651), Expect = 3e-79
Identities = 81/172 (47%), Positives = 101/172 (58%), Gaps = 8/172 (4%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
R+ E + VL P + R ++++P I IQ LLD + AY G + V+FDV F
Sbjct: 94 RFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFK 153
Query: 361 HYFKLWGRN--ENITQHAV-----KRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413
Y KL R+ E V KR P DF LWK AKPGEP ++S WG+GRPGWHIECS
Sbjct: 154 DYGKLSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECS 213
Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
AM+S G D+H GG+DLKFPHHENE AQS A + +V W+H G L
Sbjct: 214 AMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEEK-PFVKLWMHAGLLE 264
Score = 110 bits (278), Expect = 3e-26
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEH-YFHI 90
+KI+N +TK K F +K Y CG TVYD HIGH + D++ R L + +
Sbjct: 5 VKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEV 64
Query: 91 HSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
+ ++TDIDDKII +A KE +A+R+
Sbjct: 65 --TFVRNITDIDDKIIKRAGENKESPAALAERF 95
Score = 58.3 bits (142), Expect = 3e-09
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 144 GHAVCNVKLDIIRRILEH-YFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GH + D++ R L + + + ++TDIDDKII +A KE +A+R+
Sbjct: 42 GHGRSWIIFDMVVRYLRMRGYEV--TFVRNITDIDDKIIKRAGENKESPAALAERF 95
Score = 34.4 bits (80), Expect = 0.089
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 234 DEFRDELLALGVQIKDQKCEATWQFK 259
D+ RD+L LGV I+D +W+ +
Sbjct: 437 DQIRDQLTDLGVAIEDSSDGTSWRQE 462
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 253 bits (649), Expect = 5e-79
Identities = 69/172 (40%), Positives = 90/172 (52%), Gaps = 8/172 (4%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
R E + + +L P R + I I + L+ AY+ + V FDV + P
Sbjct: 91 RMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDP 150
Query: 361 HYFKLWGRN-------ENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413
Y L ++ + KR+P DF LWK +K GEP + S WG GRPGWHIECS
Sbjct: 151 TYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECS 210
Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
AM G D+H GG DL FPHHENE AQS H+ Q+VNYW+H+G +
Sbjct: 211 AMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDG-QYVNYWMHSGMVM 261
Score = 109 bits (276), Expect = 5e-26
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEH-YFHI 90
+KI+N +T+ K F + + Y CG TVYD HIGH V D++ R L + +
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKL 61
Query: 91 HSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
+ ++TDIDDKII +AN E + + R
Sbjct: 62 --KYVRNITDIDDKIIKRANENGESFVAMVDRM 92
Score = 58.3 bits (142), Expect = 3e-09
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 144 GHAVCNVKLDIIRRILEH-YFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GH V D++ R L + + + ++TDIDDKII +AN E + + R
Sbjct: 39 GHGRTFVAFDVVARYLRFLGYKL--KYVRNITDIDDKIIKRANENGESFVAMVDRM 92
Score = 33.3 bits (77), Expect = 0.17
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 234 DEFRDELLALGVQIKDQKCEATWQFK 259
D RD L +G+ ++D TW+ K
Sbjct: 436 DAARDRLNEMGIVLEDGPQGTTWRRK 461
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 244 bits (626), Expect = 4e-75
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 13/176 (7%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
+ +F K ++ P + S+ IP + ++ L + K Y S+ +VYFD F
Sbjct: 121 FFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYF-SNGNVYFDTSCFK 179
Query: 361 HYFKLWGRNENITQHAV--------KRSPFDFALW---KSAKPGEPWYESAWGKGRPGWH 409
Y ++ G + + KR+ DF LW K E ++S WG G P WH
Sbjct: 180 SYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWH 239
Query: 410 IECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
+EC+AM +F +D+H GG+D HH NE A + F N+ +W + ++H L
Sbjct: 240 LECAAMNLEYFKDALDIHLGGVDHIGVHHINEIAIAECFLNK-KWCDVFVHGEFLI 294
Score = 93.1 bits (232), Expect = 2e-20
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 25/108 (23%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEH----- 86
+K+YN TK N ++K YACGPTVY+ HIG+ + D++ + L
Sbjct: 24 LKLYNTRTKDFSELT--NFENVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKV 81
Query: 87 -YFHIHSIVISSVTDI----------DDKIINKANSLKEDYKTVAKRY 123
Y ++TDI +DK+ A +++ +
Sbjct: 82 NY-------AMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFF 122
Score = 46.1 bits (110), Expect = 2e-05
Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 23/71 (32%)
Query: 144 GHAVCNVKLDIIRRILEH------YFHIHSIVISSVTDI----------DDKIINKANSL 187
G+ + D++ + L Y ++TDI +DK+ A
Sbjct: 59 GNFRTYIFGDLLIKTLRFLGYKVNY-------AMNITDIGHLTGDLDDGEDKVAKTAREK 111
Query: 188 KEDYKTVAKRY 198
+++ +
Sbjct: 112 GLTVYEISEFF 122
Score = 34.1 bits (79), Expect = 0.12
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 234 DEFRDELLALGVQIKDQKCEATW 256
DE RD G + D K
Sbjct: 476 DEIRDFFAKKGFVLVDTKEGTKV 498
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 242 bits (619), Expect = 5e-75
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHS---VYFDVD 357
R + E M VLPP ++ I + ++ LL + AYI D VYF D
Sbjct: 108 RETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRAD 167
Query: 358 SFPHYFKLWGRNE-----------NITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRP 406
+ + G + K D LW++ +PGEP + S +G+GRP
Sbjct: 168 ATAQFGYESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRP 227
Query: 407 GWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
GWH+ECSA+A G +D+ GG DL FPHHE A + + + ++ +++HTG +
Sbjct: 228 GWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG 286
Score = 100 bits (251), Expect = 4e-23
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 22 WSLPS-----GYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVK 76
WS P+ G +++++ + P Y CG T YD+ H+GHA +
Sbjct: 6 WSAPAIPVVPGRGPALRLFDSADRQVRPVTPGPT--ATMYVCGITPYDATHLGHAATYLT 63
Query: 77 LDIIRRILEH-YFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 123
D++ R+ + + +VTD+DD + +A D++T+ R
Sbjct: 64 FDLVHRLWLDAGHTVQ--YVQNVTDVDDPLFERAERDGIDWRTLGDRE 109
Score = 56.1 bits (136), Expect = 1e-08
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 144 GHAVCNVKLDIIRRILEH-YFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRY 198
GHA + D++ R+ + + +VTD+DD + +A D++T+ R
Sbjct: 56 GHAATYLTFDLVHRLWLDAGHTVQ--YVQNVTDVDDPLFERAERDGIDWRTLGDRE 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 3e-10
Identities = 70/492 (14%), Positives = 132/492 (26%), Gaps = 148/492 (30%)
Query: 9 LALSYATSCESPKWSLPSGYDTGIKIYN---PITKTKVP---FIIQNKNHL------KWY 56
L T P + ++YN K V ++ + L K
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 57 A------CGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKAN 110
G T + VC + + F I + + + + +
Sbjct: 154 LIDGVLGSGKTW-----VALDVCLSY----KVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 111 ---SLKEDYKTVAKRYF-LPLIFKILHQKVVGSIPTRGHAVCNVKLDIIR-----RILEH 161
+ ++ + + + L + ++ + ++ + C L ++ +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVLLNVQNAKAWN- 260
Query: 162 YFHIHS-IVI----SSVTDIDDKIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLA 216
F++ I++ VTD SL T+ L+ K L +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ---- 316
Query: 217 IDLKKAKVDSGPVLTKCDEFRDELLAL-GVQIKDQKCEATWQ-FKDGKVFSDRVFISLPL 274
DL + + + P L++ I+D TW +K V D++
Sbjct: 317 -DLPREVLTTNPR----------RLSIIAESIRDGLA--TWDNWK--HVNCDKL------ 355
Query: 275 YLILIQVSL--LGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLP-----PTRA------ 321
+I+ SL L P R + F+ V P PT
Sbjct: 356 -TTIIESSLNVLEPAEYR--------------KMFDR---LSVFPPSAHIPTILLSLIWF 397
Query: 322 ---TRVSEFIPHIQSFIQTLL---DTKQAYIGSDHSVYFDVDSFPHYFKLWGRNENITQ- 374
+ + + L K++ I S S+Y + L + EN
Sbjct: 398 DVIKSDVMVV--VNKLHKYSLVEKQPKESTI-SIPSIYLE---------LKVKLENEYAL 445
Query: 375 HAV----KRSPFDFALWKSAKPGEP--WYESAWGKGRPGWHIECSAMASHFFGGQVDLHT 428
H P F P +Y HI H +
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFY----------SHI-----GHHLKNIEHPERM 490
Query: 429 GG-----IDLKF 435
+D +F
Sbjct: 491 TLFRMVFLDFRF 502
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 4e-08
Identities = 70/484 (14%), Positives = 125/484 (25%), Gaps = 206/484 (42%)
Query: 119 VAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFH--------IHSIVI 170
V K FL + ++ VG ++ L F IH++
Sbjct: 61 VGK--FLGYVSSLVEPSKVGQF-----------DQVLNLCLTE-FENCYLEGNDIHALAA 106
Query: 171 SSVTDIDDKIINKANSLKEDYK--TVAKR------------------------------- 197
+ + D ++ +K +AKR
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 198 --YF--LRLIFKI---LHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQ 250
YF LR +++ L +++ A L + L + +++ G+ I +
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSE--------LIRTTLDAEKVFTQGLNILE- 217
Query: 251 KCEATWQFKDGKV----FSDRVFISLPL--------YLILIQVSLLGPLTLRT------- 291
W + + IS PL Y++ ++ P LR+
Sbjct: 218 -----WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 292 --------VVF-------EFLFNFRYELEY-----FESMEKFGV--LPPT---RATRVSE 326
V F + R + E + LPP+ + +E
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 327 FIP------------HIQSFI----QTLLDTKQAYI----GSDHSVYFDVDSFP---HYF 363
+P +Q ++ L KQ I G+ + V V P +
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV---VSGPPQSLYGL 389
Query: 364 KLWGRNE----NITQHAV---KR------------SPF--------------DFA----L 386
L R + Q + +R SPF D
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 387 WKSAKPGEPWYESAWGKG-RPG------------------WHIECSAMASHFFGGQVDLH 427
+ + P Y++ G R W A+H +D
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI----LDFG 505
Query: 428 TGGI 431
GG
Sbjct: 506 PGGA 509
Score = 55.1 bits (132), Expect = 5e-08
Identities = 74/511 (14%), Positives = 137/511 (26%), Gaps = 212/511 (41%)
Query: 78 DIIRRILEHYFH--------IHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLPLIF 129
++ L F IH++ + + D ++ K + K Y
Sbjct: 82 QVLNLCLTE-FENCYLEGNDIHALAAKLLQENDTTLVKT--------KELIKNYI----- 127
Query: 130 KILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKA----- 184
+++ P + +S + +V + + +++ A
Sbjct: 128 ---TARIMAKRPFDKKS-------------------NSALFRAVGEGNAQLV--AIFGGQ 163
Query: 185 -NSLKEDYKTVAKRYF--LRLIFKI---LHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRD 238
N+ +D YF LR +++ L +++ A L + L + +
Sbjct: 164 GNT--DD-------YFEELRDLYQTYHVLVGDLIKFSAETLSE--------LIRTTLDAE 206
Query: 239 ELLALGVQIKDQKCEATWQFKDGKV----FSDRVFISLPL--------YLILIQVSLLGP 286
++ G+ I + W + + IS PL Y++ ++ P
Sbjct: 207 KVFTQGLNILE------WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 287 LTLRT---------------VVF-------EFLFNFRYELEY-----FESMEKFGV--LP 317
LR+ V F + R + E + LP
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 318 PT---RATRVSEFIP------------HIQSFI----QTLLDTKQAYI----GSDHSVYF 354
P+ + +E +P +Q ++ L KQ I G+ + V
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV-- 378
Query: 355 DVDSFPHYFKLWGRNENITQHAVK--------RSPFDFALWKSAKP---------GEPWY 397
V P L+G N + K R PF K P
Sbjct: 379 -VSGPPQS--LYGLNLTL--RKAKAPSGLDQSRIPFS-----ERKLKFSNRFLPVASP-- 426
Query: 398 ESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGI-----DLKFPHHENEEAQSCAFHNQS 452
+H + DL + D++ P
Sbjct: 427 ----------FH--SHLLVPASDLINKDLVKNNVSFNAKDIQIP---------------- 458
Query: 453 QWVNYWLHTGH-LRGTDGTRRLRAARFITNL 482
V Y G LR G+ R I L
Sbjct: 459 --V-YDTFDGSDLRVLSGSISERIVDCIIRL 486
Score = 38.9 bits (90), Expect = 0.004
Identities = 34/200 (17%), Positives = 58/200 (29%), Gaps = 72/200 (36%)
Query: 286 PLTLRTVVFEFLFN------FRYE-L-EYFESMEKFGVLP-PTRATR-----------VS 325
PLTL E + F L E F +LP PT V
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNK-----ILPEPTEGFAADDEPTTPAELVG 62
Query: 326 EFIPHIQSFIQ------------TLLDT-KQAYI-GSD-HSVYFDVDSFPHYFKLWGRNE 370
+F+ ++ S ++ L + Y+ G+D H++
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL---AAKLLQE----NDTT 115
Query: 371 NITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHF-----FGGQVD 425
+ + ++ A + +P + SA + + + FGGQ
Sbjct: 116 LVKTKELIKNYIT-ARIMAKRPFDKKSNSALFR---------AVGEGNAQLVAIFGGQ-- 163
Query: 426 LHTGGIDLKFPHHENEEAQS 445
G D F EE +
Sbjct: 164 ---GNTDDYF-----EELRD 175
Score = 37.3 bits (86), Expect = 0.013
Identities = 68/447 (15%), Positives = 123/447 (27%), Gaps = 191/447 (42%)
Query: 8 SLALSYATSCESPKWSLPSGYDTGIKIY--------NPITKTKVPFIIQ--NKNHLKWYA 57
+LA ++ L + IK Y P K + + + + + A
Sbjct: 103 ALAAKLLQENDTT---LVKTKEL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 58 C----GPT---------VYDS--PHIGHAVCNVKLDIIRRILEHYFHIHSIVISS----- 97
G T +Y + +G D+I+ E + + +
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVG--------DLIKFSAETLSELIRTTLDAEKVFT 210
Query: 98 -VTDIDDKIINKANSLKEDY---KTVAKRYFLPLIFKILHQ--------KVVGSIP---- 141
+I + + N +N+ +DY ++ PLI + Q K++G P
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPIS----CPLIG--VIQLAHYVVTAKLLGFTPGELR 264
Query: 142 --TRGHAVCNVKL----------------DIIRRILEHYFHI----H----------SIV 169
+G + L +R+ + F I + SI+
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 170 ISS-------------VTDIDD----KIINKAN-SLKEDYKTVAKRYFLRLI-----FKI 206
S ++++ +NK N L K+ + L+
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG-----KQVEISLVNGAKNL-- 377
Query: 207 LHQKVV-------RKLAIDLKKAKVDSG--------------------PV--------LT 231
VV L + L+KAK SG PV L
Sbjct: 378 ----VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 232 KCDEFRDELLA----------LGVQIKDQKCEATWQFKDGKVFSD--RVFISLPLY---- 275
+ ++ L + + + D + + G + I LP+
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 276 ------LILI----QVSLLGPLTLRTV 292
IL S LG LT R
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNK 520
Score = 32.7 bits (74), Expect = 0.38
Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 42/148 (28%)
Query: 188 KEDYKT--VAK-------RYFL-RLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFR 237
+ YKT A+ +F F IL +V + + G K R
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILD--IVIN---NPVNLTIHFGGEKGK--RIR 1685
Query: 238 DELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSLLGP---LTLRTVVF 294
+ A+ E DGK+ ++++F + + + L+ T
Sbjct: 1686 ENYSAM-------IFE---TIVDGKLKTEKIFKEINEHST--SYTFRSEKGLLSA-T--- 1729
Query: 295 EF----LFNFRYELEYFESMEKFGVLPP 318
+F L FE ++ G++P
Sbjct: 1730 QFTQPALTLMEKAA--FEDLKSKGLIPA 1755
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.011
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 11/40 (27%)
Query: 209 QKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIK 248
++ ++KL LK DS P LA+ ++
Sbjct: 19 KQALKKLQASLKLYADDSAPA-----------LAIKATME 47
Score = 28.4 bits (62), Expect = 3.3
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 9/30 (30%)
Query: 50 KNHLKWYACGPTVYDS-PHIGHAVCNVKLD 78
+ LK YA DS P + A+ ++
Sbjct: 26 QASLKLYA--D---DSAPAL--AI-KATME 47
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
ribonucleotide reductase, nucleotide analogs, all enzyme
ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Length = 888
Score = 31.4 bits (71), Expect = 0.89
Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 16/115 (13%)
Query: 97 SVTDIDDKIINKANSLKE---DYKTVAKRYFLPLIFKILHQKVVGSIPT---RGHAVCNV 150
+ ++D+ + DY T+A R + LH++ + N
Sbjct: 52 TTIELDNLAAETCAYMTTVHPDYATLAAR----IAISNLHKQTTKQFSKVVEDLYRYVNA 107
Query: 151 KLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDY---KTVAKRYFLRL 202
++ +++IV+ + ++ I+ + + Y KT+ + Y LR+
Sbjct: 108 ATGKPAPMISDD--VYNIVMENKDKLNSAIVYDRD-FQYSYFGFKTLERSYLLRI 159
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex,
crystallographic dimer, oxidoreductase; HET: NAI UGA;
1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6
c.26.3.1 PDB: 1dli_A*
Length = 402
Score = 30.6 bits (70), Expect = 1.3
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 11/56 (19%)
Query: 158 ILEHYFHIHSIVISSVTD--------IDDKIINKANSLKEDYKTVAKRYFLRLIFK 205
+L +Y +I +I ++ I +IIN + K V RLI K
Sbjct: 268 LLANYNNIPQTLIEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVG---VYRLIMK 320
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 30.6 bits (70), Expect = 1.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 27 GYDTGIKIYNPITKTKVPFIIQN 49
G DTG K +P+T ++P N
Sbjct: 322 GVDTGFKAVHPLTGEEIPVWAAN 344
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha;
oxidoreductase, DNA replication, allosteric enzyme,
nucleotide-binding; HET: NIY; 2.10A {Escherichia coli}
PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A
2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A*
2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B
Length = 761
Score = 29.6 bits (67), Expect = 2.7
Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 26/118 (22%)
Query: 97 SVTDIDDKIINKANSLKE----DYKTVAKRYFLPLIFKILHQKVVG--SIPT-RGHAVCN 149
+DI + II A L DY+ +A R L L +K G P H V
Sbjct: 54 KTSDIHETIIKAAADLISRDAPDYQYLAAR----LAIFHLRKKAYGQFEPPALYDHVVKM 109
Query: 150 VKLDII-RRILEHYFHIHSIVISSVTDID--DKIINKANSLKEDY---KTVAKRYFLR 201
V++ +LE Y + + D I+ + Y K + +Y ++
Sbjct: 110 VEMGKYDNHLLEDY---------TEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQ 158
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia
coli} PDB: 2ajh_A 2aji_A
Length = 196
Score = 29.0 bits (66), Expect = 3.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 27 GYDTGIKIYNPITKTKVP 44
G DTG K +P+T ++P
Sbjct: 85 GVDTGFKAVHPLTGEEIP 102
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS,
metrs, parasite, protein-IN complex, translation,
nucleotide binding; HET: C13; 2.55A {Trypanosoma
brucei}
Length = 542
Score = 28.8 bits (64), Expect = 5.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 64 DSPHIGHAVCNVKLDIIRR 82
+PHIGH + D+I R
Sbjct: 22 AAPHIGHVYSTLITDVIGR 40
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 28.3 bits (64), Expect = 5.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 64 DSPHIGHAVCNVKLDIIRR 82
D PH+GHA + D I R
Sbjct: 18 DVPHLGHAYTTIAADTIAR 36
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 27.8 bits (62), Expect = 8.3
Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 46 IIQNKNHLKWYA-CGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVT-DIDD 103
++ + +K Y P+ HIG V K+ + L S++ ++ I+D
Sbjct: 29 LLASGARIKGYIGYEPS--GVAHIGWLVWMYKV----KDLVEAGVDFSVLEATWHAYIND 82
Query: 104 KI---INKANSLKEDYKTVAKRYFLPLIFKIL 132
K+ ++ + + V + +P + ++
Sbjct: 83 KLGGDMDLIRAAARIVRRVMEAAGVP-VERVR 113
>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase,
ribonucleotide reductase, allosteric enzyme, binding,
DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB:
3hnd_A* 3hne_A* 3hnf_A*
Length = 792
Score = 28.3 bits (63), Expect = 8.6
Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 24/124 (19%)
Query: 97 SVTDIDDKIINKANSLKE---DYKTVAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLD 153
+ ++D A +L DY +A R + LH++ +V D
Sbjct: 52 TTVELDTLAAETAATLTTKHPDYAILAAR----IAVSNLHKETKKVF-------SDVMED 100
Query: 154 IIRRILEHYFHIHSIVISSVTDIDDKIINKANSL---KEDY-------KTVAKRYFLRLI 203
+ I H +V S DI ++ NS D+ KT+ + Y L++
Sbjct: 101 LYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFKTLERSYLLKIN 160
Query: 204 FKIL 207
K+
Sbjct: 161 GKVA 164
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase,
class IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 28.0 bits (63), Expect = 8.8
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 64 DSPHIGHAVCNVKLDIIRR 82
PHIGHA + D + R
Sbjct: 38 GKPHIGHAYELIATDAMAR 56
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS,
isomerase, structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A
1a8h_A 2d54_A
Length = 500
Score = 28.0 bits (63), Expect = 8.9
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 64 DSPHIGHAVCNVKLDIIRR 82
PH+GHA V D + R
Sbjct: 16 AEPHLGHAYTTVVADFLAR 34
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 28.0 bits (63), Expect = 8.9
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 64 DSPHIGHAVCNVKLDIIRR 82
PHIGHA + D I R
Sbjct: 25 GVPHIGHAYEYIATDAIAR 43
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation,
ATP-binding; HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 28.0 bits (63), Expect = 9.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 64 DSPHIGHAVCNVKLDIIRR 82
SPHIGH + +D++ R
Sbjct: 39 ASPHIGHVYSTLIVDVLGR 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.435
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,241,308
Number of extensions: 506252
Number of successful extensions: 1226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1194
Number of HSP's successfully gapped: 40
Length of query: 515
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 417
Effective length of database: 3,965,535
Effective search space: 1653628095
Effective search space used: 1653628095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.5 bits)