RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13464
(515 letters)
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 88.1 bits (217), Expect = 8e-20
Identities = 68/172 (39%), Positives = 87/172 (50%), Gaps = 8/172 (4%)
Query: 301 RYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFP 360
R E + + +L P R + I I + L+ AY+ + V FDV + P
Sbjct: 91 RMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDP 150
Query: 361 HYFKL-------WGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECS 413
Y L + KR+P DF LWK +K GEP + S WG GRPGWHIECS
Sbjct: 151 TYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECS 210
Query: 414 AMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLR 465
AM G D+H GG DL FPHHENE AQS + Q+VNYW+H+G +
Sbjct: 211 AMNCKQLGNHFDIHGGGSDLMFPHHENEIAQST-CAHDGQYVNYWMHSGMVM 261
Score = 83.1 bits (204), Expect = 4e-18
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 32 IKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIH 91
+KI+N +T+ K F + + Y CG TVYD HIGH V D++ R L +
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLR-FLGYK 60
Query: 92 SIVISSVTDIDDKIINKANSLKEDYK 117
+ ++TDIDDKII +AN E +
Sbjct: 61 LKYVRNITDIDDKIIKRANENGESFV 86
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 59.4 bits (142), Expect = 3e-10
Identities = 16/172 (9%), Positives = 42/172 (24%), Gaps = 8/172 (4%)
Query: 298 FNFRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVD 357
+ + ++ E +EK G+ I+ + + + +
Sbjct: 101 YAEHFMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAK 160
Query: 358 SFPHY-----FKLWGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIEC 412
P ++ ++ +K + E W + G + W ++
Sbjct: 161 QPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDW 220
Query: 413 SAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHL 464
+ VD G D + + + L +
Sbjct: 221 ---PMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFV 269
Score = 44.0 bits (102), Expect = 3e-05
Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 1/68 (1%)
Query: 56 YACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKED 115
G T H+G+ I+ L + I D D N +E
Sbjct: 22 VESGITPSGYVHVGNFRELFTAYIVGHALRDKGY-EVRHIHMWDDYDRFRKVPRNVPQEW 80
Query: 116 YKTVAKRY 123
+
Sbjct: 81 KDYLGMPI 88
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 45.3 bits (106), Expect = 9e-06
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 60 PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTV 119
P S H+GH + +++ D+ R H I + I+ KA L + +
Sbjct: 11 PYANGSIHLGHMLEHIQADVWVRYQRMRGH-EVNFICADDAHGTPIMLKAQQLGITPEQM 69
Query: 120 AKRYF 124
Sbjct: 70 IGEMS 74
Score = 33.3 bits (75), Expect = 0.061
Identities = 33/321 (10%), Positives = 69/321 (21%), Gaps = 52/321 (16%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLRLI 203
GH + +++ D+ R H I + I+ KA L + +
Sbjct: 20 GHMLEHIQADVWVRYQRMRGH-EVNFICADDAHGTPIMLKAQQLGITPEQMIGEMS---- 74
Query: 204 FKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRDELLALGVQIKDQKCEATWQFKDGKV 263
++ D + + E + ++ + + K+
Sbjct: 75 ---------QEHQTDFAGFNISYDNYHSTHSEENRQ----LSELIYSRLKENGFIKNRT- 120
Query: 264 FSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESMEKFGVLPPTRATR 323
L L R VV R +F + F +
Sbjct: 121 -----------ISQLYDPEKGMFLPDRFVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRS 169
Query: 324 VSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSFPHYFKLWGRNENITQHAVKRSPFD 383
+ + Q + S + YF + K +
Sbjct: 170 GALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYF----------------- 212
Query: 384 FALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEA 443
+ + S H G D+ + H A
Sbjct: 213 ---YVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFHSLFWPA 269
Query: 444 QSCAFHNQSQWVNYWLHTGHL 464
+ + G++
Sbjct: 270 MLEGSNFRKPS--NLFVHGYV 288
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 42.3 bits (98), Expect = 9e-05
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 60 PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTV 119
V PH+GHA V D + R + + ++ + + + A + ED K
Sbjct: 12 YYVNAEPHLGHAYTTVVADFLARWHRLDGY-RTFFLTGTDEHGETVYRAAQAAGEDPKAF 70
Query: 120 AKRYF 124
R
Sbjct: 71 VDRVS 75
Score = 31.6 bits (70), Expect = 0.24
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 144 GHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKTVAKRYFLR 201
GHA V D + R + + ++ + + + A + ED K R R
Sbjct: 21 GHAYTTVVADFLARWHRLDGY-RTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGR 77
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 38.1 bits (87), Expect = 0.002
Identities = 17/152 (11%), Positives = 38/152 (25%), Gaps = 2/152 (1%)
Query: 60 PTVYDSPHIGHAV-CNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKEDYKT 118
P H GH + DI R L + I + I +A +
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGE-DVVFICGTDEHGTPISFRALKEGRSPRE 69
Query: 119 VAKRYFLPLIFKILHQKVVGSIPTRGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDD 178
+ + + K+ R + KL + + ++ +
Sbjct: 70 IVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEH 129
Query: 179 KIINKANSLKEDYKTVAKRYFLRLIFKILHQK 210
+ + + ++ R K+
Sbjct: 130 DKMFLPDRFAICGRPISFRDSAHYYIKMQDFA 161
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 36.4 bits (83), Expect = 0.007
Identities = 42/347 (12%), Positives = 83/347 (23%), Gaps = 46/347 (13%)
Query: 144 GHAVCNVKLDIIRRILEH---------YFHIHSIVISSVTDIDDKIINKANSLKEDYKTV 194
GHA+ N D + R I + + +
Sbjct: 52 GHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGI------ATQVVVERLLLKEGKTRHDL 105
Query: 195 AKRYFLRLIFKILHQKVVRKLAIDLKK--AKVDSGPVLTKCDEFRDELLALGVQIKDQKC 252
+ FL +++ ++ + LK+ A D DE R + +
Sbjct: 106 GREKFLERVWQW-KEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEG 164
Query: 253 EATWQFKDG-KVFSDRVFISLPLYLILIQVSLLGPLTLRTVVFEFLFNFRYELEYFESME 311
A + +S + + + + E+
Sbjct: 165 LAYRAPRLVNWCPRCETTLSDLEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRG 224
Query: 312 KFGVLPPTRATRVSEFIPHIQSFI---QTLLDTKQAYIGSDHSVYFDVDSFPHYFKL--- 365
+P +++ +++ + Q + + +V Y +
Sbjct: 225 DIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTS 284
Query: 366 ---WGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPGWHIECSAMASHFFGG 422
G V + F ALW + G P P
Sbjct: 285 CEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYP---------------- 328
Query: 423 QVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNYWLHTGHLRGTDG 469
D+ G D+ F E F + + LH G + G
Sbjct: 329 -GDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLH-GLVLDEKG 373
Score = 32.2 bits (72), Expect = 0.13
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 60 PTVYDSPHIGHAVCNVKLDIIRR 82
P V S H+GHA+ N D + R
Sbjct: 43 PNVTGSLHMGHALDNSLQDALIR 65
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 33.8 bits (76), Expect = 0.044
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 60 PTVYDSPHIGHAVCNVKLDIIRR 82
PT PH+GHA D+ R
Sbjct: 47 PTANGLPHVGHAQARSYKDLFPR 69
Score = 28.8 bits (63), Expect = 1.6
Identities = 22/193 (11%), Positives = 38/193 (19%), Gaps = 24/193 (12%)
Query: 300 FRYELEYFESMEKFGVLPPTRATRVSEFIPHIQSFIQTLLDTKQAYIGSDHSVYFDVDSF 359
+ +F F + PHI+ + Y+
Sbjct: 209 YYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLP 268
Query: 360 PHYFKLWGRNENITQHAVKRSPFDFALWKSAKPGEPWYESAWGKGRPG------------ 407
+ G+ E I ++ L + P P+ + G
Sbjct: 269 IWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDV 328
Query: 408 -----------WHIECSAMASHFFGGQVDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVN 456
H D GID + + N
Sbjct: 329 WYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKN 388
Query: 457 YWLHTGHLRGTDG 469
H G + G
Sbjct: 389 VICH-GLILDEKG 400
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 33.8 bits (76), Expect = 0.052
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 60 PTVYDSPHIGHAVCNVKLDIIRR 82
P + H+GHA+ + D I R
Sbjct: 57 PYANGNLHMGHALNKILKDFIVR 79
Score = 32.6 bits (73), Expect = 0.12
Identities = 18/132 (13%), Positives = 35/132 (26%), Gaps = 9/132 (6%)
Query: 344 AYIGSDHSVYFDVDSFPHYFKLWGRNENITQHAVKRSPFDFALWKSAKPGEP----WYES 399
+ + + ++ H L+ E+ + +R D PG P E+
Sbjct: 271 VFYAENGEIIMTKETVNHVADLFA--EHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKET 328
Query: 400 AWGKGRPGWHIECSAMASHFFGGQ--VDLHTGGIDLKFPHHENEEAQSCAFHNQSQWVNY 457
+ D++ G D + S A S +
Sbjct: 329 DIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFL 388
Query: 458 WLHTGHLRGTDG 469
H G + +G
Sbjct: 389 LSH-GFVMDGEG 399
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH),
C-terminal (UDP-binding) domain {Streptococcus pyogenes
[TaxId: 1314]}
Length = 108
Score = 29.8 bits (67), Expect = 0.25
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 14/110 (12%)
Query: 104 KIINKANSLKEDYKTVAKRYFLPLIFK-----ILHQKVVGSIPTRGHAVCNVKLDIIRRI 158
+IIN + K V LI K + I + + +
Sbjct: 3 QIINVLKEQESPVKVVG---VYRLIMKSNSDNFRESAIKDVIDILKSKDIKIII-YEPML 58
Query: 159 LEHYFHIHSIVISSVTDI---DDKIINKANSLKEDYKTVAKRYFLRLIFK 205
+ S++++ + + + I+ N + + V + + R IF
Sbjct: 59 NKLESEDQSVLVNDLENFKKQANIIV--TNRYDNELQDVKNKVYSRDIFG 106
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase
(LeuRS) {Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 29.6 bits (65), Expect = 0.96
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 60 PTVYDSPHIGHAVCNVKLDIIRR 82
P H+GH D++ R
Sbjct: 42 PYPSGDLHMGHLKNYTMGDVLAR 64
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD,
receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Length = 140
Score = 27.7 bits (61), Expect = 1.9
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 152 LDIIRRILEHYFHIHSIVISSVTDIDDKIINKANSLKED---YKTVAKRYFLRLIFKILH 208
L + R+IL + I+++ DI + +A K A ++ +
Sbjct: 60 LALFRKILALDPDLPMILVTGHGDIPMAV--QAIQDGAYDFIAKPFAADRLVQSARRAEE 117
Query: 209 QKVVRKLAIDLKKA 222
++ + L++A
Sbjct: 118 KRRLVMENRSLRRA 131
Score = 27.3 bits (60), Expect = 2.3
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 77 LDIIRRILEHYFHIHSIVISSVTDIDDKI 105
L + R+IL + I+++ DI +
Sbjct: 60 LALFRKILALDPDLPMILVTGHGDIPMAV 88
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Escherichia coli [TaxId: 562]}
Length = 157
Score = 26.9 bits (58), Expect = 4.1
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 60 PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIV 94
P +D GH +DI+ R + + H+ +
Sbjct: 6 PGTFDPITNGH------IDIVTRATQMFDHVILAI 34
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 157
Score = 26.8 bits (58), Expect = 4.4
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 60 PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVIS 96
P +D +GH +DI R + + ++
Sbjct: 7 PGSFDPVTLGH------VDIFERAAAQFDEVVVAILV 37
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 217
Score = 26.7 bits (58), Expect = 5.9
Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 8/120 (6%)
Query: 13 YATSCESPKWSLPSGYDTGIKIYNPITKTKVPFIIQNKNHLKWYACGPTVYDSPHIGHAV 72
A S S S G+ I + V I+ LK + + S +
Sbjct: 74 LANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIV--NEILKEWKRIKSGKISDAEVNRA 131
Query: 73 CNVKLDIIRRILEHYFHIHSIVISSVTDID-----DKIINKANSL-KEDYKTVAKRYFLP 126
+ L+ I + V +++ + + + K+D A
Sbjct: 132 KAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQN 191
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Thermus thermophilus [TaxId: 274]}
Length = 160
Score = 26.5 bits (57), Expect = 6.5
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 60 PTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISS 97
P +D GH LD+I+R + + V+ +
Sbjct: 6 PGSFDPLTNGH------LDVIQRASRLFEKVTVAVLEN 37
>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus
faecalis (Streptococcus faecalis) [TaxId: 1351]}
Length = 353
Score = 26.9 bits (59), Expect = 6.7
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 36 NPITKTKVPFIIQNKNHLKWY-------ACGPTVYDSPHIGHAVCNVKLDIIRRILEHYF 88
P +P I +N LK A G T + + +G N +IR I
Sbjct: 211 PPWEIFGLPRITKNLADLKRILSLVDSPANGIT-FCTGSLGADPTNDLPTMIREIGHRIN 269
Query: 89 HIH 91
+H
Sbjct: 270 FVH 272
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 27.1 bits (59), Expect = 6.7
Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 6/105 (5%)
Query: 179 KIINKANSLKEDYKTVAKRYFLRLIFKILHQKVVRKLAIDLKKAKVDSGPVLTKCDEFRD 238
I+ SL+ A + + +L V + D+ R
Sbjct: 267 DILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRA 326
Query: 239 ELLALGVQIKDQKCEATWQFKDGKVFSDRVFISLPLYLILIQVSL 283
L +I+ FS R IS L L QV +
Sbjct: 327 RLKGKEGRIRGNLM------GKRVDFSARTVISGDPNLELDQVGV 365
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId:
2336]}
Length = 118
Score = 25.6 bits (56), Expect = 8.0
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 77 LDIIRRILEHYFHIHSIVISSVTDIDDKI 105
+D I+ I++ + IV S++ I
Sbjct: 62 IDAIKEIMKIDPNAKIIVCSAMGQQAMVI 90
Score = 25.6 bits (56), Expect = 8.0
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 152 LDIIRRILEHYFHIHSIVISSVTDIDDKI 180
+D I+ I++ + IV S++ I
Sbjct: 62 IDAIKEIMKIDPNAKIIVCSAMGQQAMVI 90
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 196
Score = 26.3 bits (57), Expect = 8.2
Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 51 NHLKWYACGPTVYDSPHIGHAVCNVKLDIIRRILEHYFHIHSIVISSVTDIDDKIINKAN 110
+ L + G T + + L + + + ++ + I+ AN
Sbjct: 127 SSLLRHLLGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAV-ASAEDIDAAN 185
Query: 111 SLKEDYKTVAK 121
+ + ++ V K
Sbjct: 186 NERSNFFEVKK 196
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD,
C-terminal domain {Clostridium aminobutyricum [TaxId:
33953]}
Length = 215
Score = 25.9 bits (57), Expect = 9.2
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 429 GGIDLKFPHH---ENEEAQSCAFHNQSQWVNYWLHTGHLRGTDGTRRLRAARFITNLSGS 485
GG+ + P ++E + N + R+R RF+ N+
Sbjct: 114 GGLMVTMPSEADFKSETVVGRDGETIGDFCNKFFAAAP--TCTTEERMRVLRFLENICLG 171
Query: 486 TIG 488
Sbjct: 172 ASA 174
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.435
Gapped
Lambda K H
0.267 0.0422 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,062,823
Number of extensions: 101950
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 41
Length of query: 515
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 426
Effective length of database: 1,185,626
Effective search space: 505076676
Effective search space used: 505076676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)