Query psy13469
Match_columns 74
No_of_seqs 100 out of 434
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 20:12:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rvy_A ION transport protein; 97.3 0.00018 6E-09 49.8 3.6 40 21-60 13-52 (285)
2 4dxw_A Navrh, ION transport pr 96.4 0.00037 1.3E-08 46.8 -0.7 32 29-60 3-34 (229)
3 2r9r_B Paddle chimera voltage 94.7 0.028 9.7E-07 42.5 4.0 39 22-60 159-204 (514)
4 1ors_C Potassium channel; volt 94.6 0.017 6E-07 36.3 2.1 27 34-60 2-28 (132)
5 1orq_C Potassium channel; volt 92.7 0.036 1.2E-06 36.7 1.1 29 32-60 2-30 (223)
6 2kyh_A KVAP, voltage-gated pot 90.2 0.46 1.6E-05 30.5 4.4 37 24-60 7-43 (147)
7 3beh_A MLL3241 protein; transm 72.4 2.4 8.2E-05 29.5 2.6 24 37-60 7-30 (355)
8 4efo_A Serine/threonine-protei 9.5 1.7E+02 0.0057 17.3 1.8 18 11-28 76-93 (94)
9 3g36_A Protein DPY-30 homolog; 7.8 1.7E+02 0.006 15.6 1.3 15 23-37 33-47 (55)
10 4htm_A CREB-regulated transcri 7.3 1E+02 0.0035 15.3 0.2 12 25-37 2-13 (34)
No 1
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.31 E-value=0.00018 Score=49.82 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=33.2
Q ss_pred eCCCChhHHHHHHhhccCchHHHHHHHHHHHHHHHHhhcC
Q psy13469 21 LSETNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEEH 60 (74)
Q Consensus 21 fsp~Np~R~~ci~i~~~~~F~~~Il~~Il~nci~Lal~~p 60 (74)
.++.+.+|+.|.+++.+++|+++++++|++|++.++++..
T Consensus 13 ~p~~~~~r~~~~~i~~~~~f~~~i~~li~l~~i~~~~~~~ 52 (285)
T 3rvy_A 13 VPRGSHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETS 52 (285)
T ss_dssp ------CHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCchHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555669999999999999999999999999999999986
No 2
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=96.41 E-value=0.00037 Score=46.76 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=29.5
Q ss_pred HHHHHhhccCchHHHHHHHHHHHHHHHHhhcC
Q psy13469 29 QYTRFIIEWPPFEYAVLLTIIANCVVLALEEH 60 (74)
Q Consensus 29 ~~ci~i~~~~~F~~~Il~~Il~nci~Lal~~p 60 (74)
.+|.+++.+++||.+++++|++|++.++++.+
T Consensus 3 ~~~~~iv~~~~f~~~i~~~I~ln~i~l~~~~~ 34 (229)
T 4dxw_A 3 PFFSSLKDNRIFQFTVVSIIILNAVLIGATTY 34 (229)
T ss_dssp CSSTTTTTCHHHHHHHHHHHHHHHHSTTTCCS
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHccC
Confidence 46788999999999999999999999999986
No 3
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=94.73 E-value=0.028 Score=42.52 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=35.5
Q ss_pred CCCChhHHHHHHhhccC-------chHHHHHHHHHHHHHHHHhhcC
Q psy13469 22 SETNTVRQYTRFIIEWP-------PFEYAVLLTIIANCVVLALEEH 60 (74)
Q Consensus 22 sp~Np~R~~ci~i~~~~-------~F~~~Il~~Il~nci~Lal~~p 60 (74)
.|.|.+|+.+..++++| +|+.+++++|++|.++++++..
T Consensus 159 ~p~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~ 204 (514)
T 2r9r_B 159 LPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETL 204 (514)
T ss_dssp CCSCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 37899999999999984 8999999999999999999875
No 4
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=94.58 E-value=0.017 Score=36.29 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=24.8
Q ss_pred hhccCchHHHHHHHHHHHHHHHHhhcC
Q psy13469 34 IIEWPPFEYAVLLTIIANCVVLALEEH 60 (74)
Q Consensus 34 i~~~~~F~~~Il~~Il~nci~Lal~~p 60 (74)
++++++||.++++.|++|.+++++|..
T Consensus 2 ~v~~~~f~~~i~~lIlls~~~~~~et~ 28 (132)
T 1ors_C 2 VMEHPLVELGVSYAALLSVIVVVVEYT 28 (132)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999986
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=92.66 E-value=0.036 Score=36.70 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=25.4
Q ss_pred HHhhccCchHHHHHHHHHHHHHHHHhhcC
Q psy13469 32 RFIIEWPPFEYAVLLTIIANCVVLALEEH 60 (74)
Q Consensus 32 i~i~~~~~F~~~Il~~Il~nci~Lal~~p 60 (74)
.+++++|+||.++++.|++|.++++++..
T Consensus 2 ~~~~~~~~f~~~i~~lil~~~~~~~~~~~ 30 (223)
T 1orq_C 2 GDVMEHPLVELGVSYAALLSVIVVVVECT 30 (223)
T ss_dssp TTTCCSHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhCchHHHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999988853
No 6
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=90.16 E-value=0.46 Score=30.53 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=32.1
Q ss_pred CChhHHHHHHhhccCchHHHHHHHHHHHHHHHHhhcC
Q psy13469 24 TNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEEH 60 (74)
Q Consensus 24 ~Np~R~~ci~i~~~~~F~~~Il~~Il~nci~Lal~~p 60 (74)
....|+....++++++||.++++.|++|-+++.++.-
T Consensus 7 ~~~~~~~~~~~~e~~~f~~~i~~lil~sv~~v~~et~ 43 (147)
T 2kyh_A 7 LGGRVRNIGDVMEHPLVELGVSYAALLSVIVVVVEYT 43 (147)
T ss_dssp CSHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888999999999999999999999888877753
No 7
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=72.41 E-value=2.4 Score=29.50 Aligned_cols=24 Identities=4% Similarity=-0.121 Sum_probs=21.6
Q ss_pred cCchHHHHHHHHHHHHHHHHhhcC
Q psy13469 37 WPPFEYAVLLTIIANCVVLALEEH 60 (74)
Q Consensus 37 ~~~F~~~Il~~Il~nci~Lal~~p 60 (74)
+++|+.++++.|++|.++++++.-
T Consensus 7 s~~f~~~~~~~i~ls~~~~~~~t~ 30 (355)
T 3beh_A 7 LRIYAPLNAVLAAPGLLAVAALTI 30 (355)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcc
Confidence 468999999999999999999865
No 8
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=9.49 E-value=1.7e+02 Score=17.35 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=11.9
Q ss_pred CCCCCceEEEeCCCChhH
Q psy13469 11 SHRGPSSLFLLSETNTVR 28 (74)
Q Consensus 11 rf~~~~Slflfsp~Np~R 28 (74)
..++++=+++||..|+-|
T Consensus 76 ~Tt~~~Pl~L~s~~~~~~ 93 (94)
T 4efo_A 76 KTTEENPIFVVSLERPHR 93 (94)
T ss_dssp CCBTTBCEEEEECCC---
T ss_pred CCCCCCCEEEEecCCcCC
Confidence 455566799999999876
No 9
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=7.78 E-value=1.7e+02 Score=15.61 Aligned_cols=15 Identities=7% Similarity=0.293 Sum_probs=12.1
Q ss_pred CCChhHHHHHHhhcc
Q psy13469 23 ETNTVRQYTRFIIEW 37 (74)
Q Consensus 23 p~Np~R~~ci~i~~~ 37 (74)
|.+|++-.+.+++.+
T Consensus 33 P~DPi~~LA~~Ll~~ 47 (55)
T 3g36_A 33 PPNPIEFLASYLLKN 47 (55)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 788888888887765
No 10
>4htm_A CREB-regulated transcription coactivator 2; alpha-helix, CREB binding, protein binding; 2.00A {Homo sapiens}
Probab=7.34 E-value=1e+02 Score=15.30 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=6.3
Q ss_pred ChhHHHHHHhhcc
Q psy13469 25 NTVRQYTRFIIEW 37 (74)
Q Consensus 25 Np~R~~ci~i~~~ 37 (74)
|| |++|-+|..|
T Consensus 2 ~p-rkfsekia~~ 13 (34)
T 4htm_A 2 NP-RKFSEKIALQ 13 (34)
T ss_dssp ---CHHHHHHHHH
T ss_pred ch-hhHHHHHHHH
Confidence 45 7777665443
Done!