RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13469
         (74 letters)



>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
          pernix [TaxId: 56636]}
          Length = 132

 Score = 31.4 bits (71), Expect = 0.003
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 34 IIEWPPFEYAVLLTIIANCVVLALEEH 60
          ++E P  E  V    + + +V+ +E  
Sbjct: 2  VMEHPLVELGVSYAALLSVIVVVVEYT 28


>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein
           CoaBC, phosphopantothenoylcysteine synthase domain
           (CoaB) {Escherichia coli [TaxId: 562]}
          Length = 223

 Score = 24.4 bits (52), Expect = 1.6
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 58  EEHLPKGDKTALAKKLI 74
           ++ LP   K  L + L+
Sbjct: 195 DKVLPLERKELLGQLLL 211


>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
           thermophilus [TaxId: 274]}
          Length = 343

 Score = 23.0 bits (48), Expect = 5.2
 Identities = 11/62 (17%), Positives = 21/62 (33%)

Query: 13  RGPSSLFLLSETNTVRQYTRFIIEWPPFEYAVLLTIIANCVVLALEEHLPKGDKTALAKK 72
              + + L      + +    + +     Y  LLT +    + AL +  P      LA+ 
Sbjct: 232 SLDNYIGLTEPPEAMFKKLMRVPDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRVLARL 291

Query: 73  LI 74
           L 
Sbjct: 292 LT 293


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0490    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 262,068
Number of extensions: 9206
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 3
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)