BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1347
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KIC|A Chain A, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|B Chain B, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|C Chain C, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|D Chain D, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|E Chain E, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|F Chain F, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|G Chain G, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|H Chain H, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|I Chain I, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|J Chain J, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|K Chain K, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|L Chain L, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|M Chain M, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|N Chain N, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|O Chain O, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|P Chain P, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|Q Chain Q, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|R Chain R, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|S Chain S, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|T Chain T, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|A Chain A, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|B Chain B, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|C Chain C, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|D Chain D, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|E Chain E, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|F Chain F, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|G Chain G, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|H Chain H, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|I Chain I, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|J Chain J, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|K Chain K, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|L Chain L, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|M Chain M, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|N Chain N, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|O Chain O, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|P Chain P, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|Q Chain Q, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|R Chain R, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|S Chain S, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|T Chain T, Crystal Structure Of Adeno-Associated Virus Serotype 3b
Length = 736
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Query: 1 MLFPFHNYLGPGNHLDNGPPIDDDDEIALRHDEAYETATSPEQVRQAD 48
++ P + YLGPGN LD G P+++ D AL HD+AY+ +Q++ D
Sbjct: 45 LVLPGYKYLGPGNGLDKGEPVNEADAAALEHDKAYD-----QQLKAGD 87
>pdb|3NTT|A Chain A, Structural Insights Of Adeno-Associated Virus 5. A Gene
Therapy Vector For Cystic Fibrosis
Length = 724
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 1 MLFPFHNYLGPGNHLDNGPPIDDDDEIALRHDEAYETATSPEQVRQAD 48
++ P +NYLGPGN LD G P++ DE+A HD +Y EQ+ D
Sbjct: 44 LVLPGYNYLGPGNGLDRGEPVNRADEVAREHDISYN-----EQLEAGD 86
>pdb|4G0R|A Chain A, Structural Characterization Of H-1 Parvovirus:
Comparison Of Infectious Virions To Replication
Defective Particles
pdb|4GBT|A Chain A, Structural Characterization Of H-1 Parvovirus:
Comparison Of Infectious Virions To Replication
Defective Particles
Length = 735
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 4 PFHNYLGPGNHLDNGPPIDDDDEIALRHDEAYE 36
P + YLGPGN LD G P + D A HDEAY+
Sbjct: 15 PGYKYLGPGNSLDQGEPTNPSDAAAKEHDEAYD 47
>pdb|3J1Q|A Chain A, Structure Of Aav-Dj, A Retargeted Gene Therapy Vector:
Cryo-Electron Microscopy At 4.5a Resolution
Length = 737
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 1 MLFPFHNYLGPGNHLDNGPPIDDDDEIALRHDEAYE 36
++ P + YLGP N LD G P+++ D AL HD+AY+
Sbjct: 45 LVLPGYKYLGPFNGLDKGEPVNEADAAALEHDKAYD 80
>pdb|3NG9|A Chain A, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|B Chain B, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|C Chain C, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|D Chain D, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|E Chain E, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|F Chain F, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|G Chain G, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|H Chain H, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|I Chain I, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|J Chain J, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
Length = 736
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 1 MLFPFHNYLGPGNHLDNGPPIDDDDEIALRHDEAYETATSPEQVRQADIEAIR 53
++ P + YLGP N LD G P++ D AL HD+AY+ +Q++ D +R
Sbjct: 45 LVLPGYKYLGPFNGLDKGEPVNAADAAALEHDKAYD-----QQLKAGDNPYLR 92
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 26/140 (18%)
Query: 108 TTGVMGLLVGHPMDTIKTRTQTMPD-------------KTMIQIIANTFKLEGFRGFYKG 154
T + L+ P+DT K R Q + + ++ I + EG R Y G
Sbjct: 10 TAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNG 69
Query: 155 FLAPMLTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGA 214
+A + ++ G+Y + ++ SE + + +GS GA
Sbjct: 70 LVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHA-------------GIGSRLLAGSTTGA 116
Query: 215 IITAVGAPVEAIKTRLQANA 234
+ AV P + +K R QA A
Sbjct: 117 LAVAVAQPTDVVKVRFQAQA 136
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 105 SLYTTGVMGLLVGHPMDTIKTR---TQTMPDKTMIQIIANTFKLEGFRGFYKGFLAPMLT 161
S + G ++ P+D +KTR + + + EG R FYKGF+ L
Sbjct: 208 SAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLR 267
Query: 162 TGVTNAIFFGVYGNTIRYLRSISESSE 188
G N + F Y R L + +S E
Sbjct: 268 LGSWNVVMFVTYEQLKRALMAAYQSRE 294
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 20/148 (13%)
Query: 102 EVLSLYTTGVMGLLVGHPMDTIKTRTQTMPD-------KTMIQIIANTFKLEGFRGFYKG 154
+L+ TTG + + V P D +K R Q ++ ++ + EG RG +KG
Sbjct: 107 RLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKG 166
Query: 155 FLAPMLTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGA 214
+ + N Y L + +++ C F S AG
Sbjct: 167 TSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPC------------HFTSAFGAGF 214
Query: 215 IITAVGAPVEAIKTRLQANA-GNYSMYG 241
T + +PV+ +KTR +A G Y G
Sbjct: 215 CTTVIASPVDVVKTRYMNSALGQYHSAG 242
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 93 KSGWTPVIQEVLSLYTTGVMGLLVGHPMDTIKTRTQTMPDKTMIQ--------IIANTFK 144
K W + S G L +P+D +TR K Q I FK
Sbjct: 106 KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 165
Query: 145 LEGFRGFYKGFLAPMLTTGVTNAIFFGVY 173
+G RG Y+GF + + A +FGVY
Sbjct: 166 SDGLRGLYQGFNVSVQGIIIYRAAYFGVY 194
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 13/124 (10%)
Query: 114 LLVGHPMDTIKTRTQTMPDKTMIQIIANTFKLEGFRGFYKGFLAPMLTTGVTNAIFFGVY 173
L V H I Q K +I + K +GF F++G LA ++ T A+ F
Sbjct: 35 LQVQHASKQISAEKQY---KGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFK 91
Query: 174 GNTIR-YLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGAIITAVGAPVEAIKTRLQA 232
+ +L + + +R + A L SG AGA P++ +TRL A
Sbjct: 92 DKYKQIFLGGVDRHKQFWR---YFAGNLA------SGGAAGATSLCFVYPLDFARTRLAA 142
Query: 233 NAGN 236
+ G
Sbjct: 143 DVGK 146
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 69/173 (39%), Gaps = 35/173 (20%)
Query: 94 SGWTPVIQEVLSLY--TTGVMGLLVGHPMDTIKTRTQTMPDKTMIQIIANTFKLEGFRGF 151
SG+ I ++ +L TT V+ L P D ++ T+ M + I + + LEG + F
Sbjct: 178 SGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQF 237
Query: 152 Y-----KGFLAPMLT-----TGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLW 201
Y + + LT VT A+ F NT R + E + + R D F + ++
Sbjct: 238 YVNVEEEEYKYECLTDLYDSISVTQAVIF---CNT---RRKVEELTTKLRNDKFTVSAIY 291
Query: 202 D----------WNEFFSGSIAGAIIT---AVGAPVE----AIKTRLQANAGNY 237
EF SGS I T A G V+ I L AN NY
Sbjct: 292 SDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENY 344
>pdb|3VBZ|A Chain A, Crystal Structure Of Taipoxin Beta Subunit Isoform 2
pdb|3VBZ|B Chain B, Crystal Structure Of Taipoxin Beta Subunit Isoform 2
Length = 118
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 5 FHNYLGPGNHLDNGPPIDDDDEIALRHDEAYETA 38
F NY + G P+DD D HDE Y TA
Sbjct: 22 FMNYGCYCGTVGRGTPVDDLDRCCQVHDECYATA 55
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 139 IANTFKL---EGFRGFYKGFLAPMLTTGV 164
+A +F+L EGFR FY G LA ++ G+
Sbjct: 188 LAESFRLXSEEGFRSFYDGSLADIIIAGL 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,012,896
Number of Sequences: 62578
Number of extensions: 330368
Number of successful extensions: 897
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 883
Number of HSP's gapped (non-prelim): 15
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)