RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1347
(245 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 80.0 bits (198), Expect = 5e-18
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 26/140 (18%)
Query: 108 TTGVMGLLVGHPMDTIKTRTQT-------------MPDKTMIQIIANTFKLEGFRGFYKG 154
T + L+ P+DT K R Q + ++ I + EG R Y G
Sbjct: 10 TAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNG 69
Query: 155 FLAPMLTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGA 214
+A + ++ G+Y +S +++ G + + +GS GA
Sbjct: 70 LVAGLQRQMSFASVRIGLY-----------DSVKQFYTKGSEHAGI--GSRLLAGSTTGA 116
Query: 215 IITAVGAPVEAIKTRLQANA 234
+ AV P + +K R QA A
Sbjct: 117 LAVAVAQPTDVVKVRFQAQA 136
Score = 71.9 bits (177), Expect = 5e-15
Identities = 33/156 (21%), Positives = 56/156 (35%), Gaps = 20/156 (12%)
Query: 91 VDKSGWTPVIQEVLSLYTTGVMGLLVGHPMDTIKTRTQ---TMPD----KTMIQIIANTF 143
S + +L+ TTG + + V P D +K R Q ++ ++
Sbjct: 96 TKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIA 155
Query: 144 KLEGFRGFYKGFLAPMLTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDW 203
+ EG RG +KG + + N Y L + +++ C
Sbjct: 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCH---------- 205
Query: 204 NEFFSGSIAGAIITAVGAPVEAIKTRLQ-ANAGNYS 238
F S AG T + +PV+ +KTR + G Y
Sbjct: 206 --FTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYH 239
Score = 60.4 bits (147), Expect = 4e-11
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 110 GVMGLLVGHPMDTIKTRTQTMPD---KTMIQIIANTFKLEGFRGFYKGFLAPMLTTGVTN 166
G ++ P+D +KTR + + EG R FYKGF+ L G N
Sbjct: 213 GFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWN 272
Query: 167 AIFFGVYGNTIRYLRSISESSE 188
+ F Y R L + +S E
Sbjct: 273 VVMFVTYEQLKRALMAAYQSRE 294
Score = 33.0 bits (76), Expect = 0.059
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 206 FFSGSIAGAIITAVGAPVEAIKTRLQ 231
F A I + P++ K RLQ
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQ 30
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus,
icosahedral virus; HET: ADE; 2.50A {Adeno-associated
virus - 1} PDB: 3kic_A* 3kie_A* 3oah_A* 1vu0_U 1vu1_o
3tsx_A 3shm_A 1lp3_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A*
3ra9_A* 3raa_A* 3ux1_A
Length = 736
Score = 72.6 bits (177), Expect = 6e-15
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 1 MLFPFHNYLGPGNHLDNGPPIDDDDEIALRHDEAYETATSP-----EQVRQADIEAIRDF 55
++ P + YLGP N LD G P++ D AL HD+AY+ + AD E
Sbjct: 45 LVLPGYKYLGPFNGLDKGEPVNAADAAALEHDKAYDQQLKAGDNPYLRYNHADAEFQERL 104
Query: 56 NTNYVATGNWHSVVGAIGLTWKYEVEQFTGVLYPPVDKS 94
+ GN +G K V + G++ +
Sbjct: 105 QEDTSFGGN----LGRAVFQAKKRVLEPLGLVEEGAKTA 139
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid
receptor, icosahedral virus; 3.45A {Adeno-associated
virus - 5}
Length = 724
Score = 69.1 bits (168), Expect = 1e-13
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 1 MLFPFHNYLGPGNHLDNGPPIDDDDEIALRHDEAYETATSP-----EQVRQADIEAIRDF 55
++ P +NYLGPGN LD G P++ DE+A HD +Y + AD E
Sbjct: 44 LVLPGYNYLGPGNGLDRGEPVNRADEVAREHDISYNEQLEAGDNPYLKYNHADAEFQEKL 103
Query: 56 NTNYVATGNWHSVVGAIGLTWKYEVEQFTGVLYPPVDK 93
+ GN +G K V + G++
Sbjct: 104 ADDTSFGGN----LGKAVFQAKKRVLEPFGLVEEGAKT 137
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 63.8 bits (156), Expect = 4e-12
Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 32/188 (17%)
Query: 63 GNWHSVVG-----AIGLTWKYEVEQFTGVLYPPVDK--SGWTPVIQEVLSLYTTGVMGLL 115
GN +V+ A+ +K +++ + VD+ W + S G L
Sbjct: 72 GNLANVIRYFPTQALNFAFK---DKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLC 128
Query: 116 VGHPMDTIKTRTQTMPDKT--------MIQIIANTFKLEGFRGFYKGFLAPMLTTGVTNA 167
+P+D +TR K + I FK +G RG Y+GF + + A
Sbjct: 129 FVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRA 188
Query: 168 IFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGAIITAVGAPVEAIK 227
+FGVY + + + + + + A+ V P + ++
Sbjct: 189 AYFGVYDT----AKGMLPDPKN---VHIIVS-------WMIAQTVTAVAGLVSYPFDTVR 234
Query: 228 TRLQANAG 235
R+ +G
Sbjct: 235 RRMMMQSG 242
Score = 60.3 bits (147), Expect = 5e-11
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 18/137 (13%)
Query: 110 GVMGLLVGHPMDTIKTRTQT----------MPDKTMIQIIANTFKLEGFRGFYKGFLAPM 159
+ P++ +K Q K +I + K +GF F++G LA +
Sbjct: 18 AAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANV 77
Query: 160 LTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGAIITAV 219
+ T A+ F + + +++ + SG AGA
Sbjct: 78 IRYFPTQALNFAFKDKYKQIFLGGVDRHKQFW--------RYFAGNLASGGAAGATSLCF 129
Query: 220 GAPVEAIKTRLQANAGN 236
P++ +TRL A+ G
Sbjct: 130 VYPLDFARTRLAADVGK 146
Score = 50.3 bits (121), Expect = 1e-07
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 110 GVMGLLVGHPMDTIKTRTQTMPD--------KTMIQIIANTFKLEGFRGFYKGFLAPMLT 161
+ LV +P DT++ R + K EG + F+KG + +L
Sbjct: 220 TAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVL- 278
Query: 162 TGVTNAIFFGVYGNTIRYL 180
G+ A +Y +++
Sbjct: 279 RGMGGAFVLVLYDEIKKFV 297
Score = 37.2 bits (87), Expect = 0.003
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 199 PLWDWNEFFSGSIAGAI-ITAVGAPVEAIKTRLQANAGNYSMYG 241
L +F +G +A AI TAV AP+E +K LQ + +
Sbjct: 4 ALSFLKDFLAGGVAAAISKTAV-APIERVKLLLQVQHASKQISA 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.015
Identities = 56/324 (17%), Positives = 85/324 (26%), Gaps = 112/324 (34%)
Query: 19 PPIDD---DDEIA---------LRHDEAYETATSPEQVRQADIEAIRDFNTNYVATGNWH 66
P + DDE L + + + Q Q + +F Y+ + H
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 67 SVVGAIGLTWKYEVEQFTGVL--Y--------PPVDK-----------SGWTPVI----- 100
++ + + + ++ Y P DK G ++
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 101 Q--------EVLSLYTT-------------GVMGLLVGHPMDTIKTRTQTM--------P 131
Q E+ LY T + L+ +D K TQ + P
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 132 DKT--------------MIQII-----ANTFKLEGFRGFYKGFLAPML--TTGVTNAI-- 168
T +I +I T KL GF G L L TG + +
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT---PGELRSYLKGATGHSQGLVT 279
Query: 169 ------------FFGVYGNTIRYLRSI-SESSEEYRCDGFLATPLWDWNEFFSG------ 209
FF I L I E Y + L D E G
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 210 SIAGAIITAVGAPVEAIKTRLQAN 233
SI+ V V + L A
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAG 363
Score = 32.3 bits (73), Expect = 0.18
Identities = 37/241 (15%), Positives = 70/241 (29%), Gaps = 93/241 (38%)
Query: 33 EAYETATSPEQV-RQADIEAIRDFNTNY------VATGNWHSVV----GAIGLTWKYEVE 81
+ Y+T+ + + V +AD F Y + N ++ G G K E
Sbjct: 1634 DLYKTSKAAQDVWNRAD----NHFKDTYGFSILDIVINNPVNLTIHFGGEKG---KRIRE 1686
Query: 82 QFTGVLY-PPVDKSGWTPVIQEVLSLYTTGVMGLLVGHPMDTIKTRTQ-TMPDKTMIQII 139
++ +++ VD T I + ++ ++T + + TQ T P
Sbjct: 1687 NYSAMIFETIVDGKLKTEKIFKEINEHSTSYT---FRSEKGLL-SATQFTQP-------- 1734
Query: 140 ANTFKLEGFRGFYKGFLAPMLTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATP 199
A + A F L+S G +
Sbjct: 1735 -----------------A-LTLMEK--AAF--------EDLKS----------KGLI--- 1753
Query: 200 LWDWNEFFSG----------SIAGAI-----ITAV---GAPVEAIKTRLQANAGNYSMYG 241
+ F+G S+A + + V G ++ R + NY M
Sbjct: 1754 --PADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 242 V 242
+
Sbjct: 1812 I 1812
>3vbz_A Phospholipase A2 homolog, taipoxin beta chain; phospholipase A2
fold, PLA2 fold, neurotoxin, binding; 1.76A {Oxyuranus
scutellatus scutellatus} PDB: 3vc0_A
Length = 118
Score = 31.5 bits (71), Expect = 0.076
Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 7 NYLGPGNHLDNGPPIDDDDEIALRHDEAYETATSPE 42
Y G G P+DD D HDE Y TA
Sbjct: 27 CYCGTVGR---GTPVDDLDRCCQVHDECYATAEKHG 59
>1jia_A Phospholipase A2; agkistrodon haLys pallas; 2.13A {Gloydius
halys} SCOP: a.133.1.2 PDB: 1b4w_A 1c1j_A*
Length = 122
Score = 31.6 bits (71), Expect = 0.087
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 3 FPFHNYLGPGNHL---DNGPPIDDDDEIALRHDEAYETATS 40
P +Y G + G P D D HD YE T
Sbjct: 16 EPVVSYAFYGCYCGSGGRGKPKDATDRCCFVHDCCYEKVTG 56
>1jlt_B Phospholipase A2, vipoxin; heterodimer complex, hydrolase,
PLA2-activity; 1.40A {Vipera ammodytes ammodytes} SCOP:
a.133.1.2 PDB: 1rgb_A* 2i0u_E* 1aok_B 1oqs_B
Length = 122
Score = 31.6 bits (71), Expect = 0.094
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 3 FPFHNYLGPGNHL---DNGPPIDDDDEIALRHDEAYETATS 40
F NY+ G + G P D D HD Y
Sbjct: 16 FSVWNYISYGCYCGWGGQGTPKDATDRCCFVHDCCYGRVRG 56
>2aoz_A Myotoxin II, phospholipase A2 homolog; X-RAY diffration,
myotoxicity, atropoides toxin; 2.08A {Atropoides
nummifer}
Length = 121
Score = 31.1 bits (70), Expect = 0.11
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 3 FPFHNYLGPGNHL---DNGPPIDDDDEIALRHDEAYETAT 39
+Y G + G P D D H Y+ T
Sbjct: 16 NAAPSYGFYGCNCGVGSRGKPKDATDRCCFVHKCCYKALT 55
>1gmz_A Phospholipase A2; hydrolase, neurotoxic; 2.4A {Bothrops pirajai}
SCOP: a.133.1.2
Length = 122
Score = 30.8 bits (69), Expect = 0.16
Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 7 NYLGPGNHLDNGPPIDDDDEIALRHDEAYETATS 40
Y G G G P D D HD Y TS
Sbjct: 26 CYCGVGGR---GGPKDATDRCCFVHDCCYGKLTS 56
>4e4c_A Phospholipase A2; hydrolase; HET: MES; 1.80A {Notechis scutatus
scutatus} PDB: 1ae7_A* 2not_A
Length = 119
Score = 30.3 bits (68), Expect = 0.23
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 7 NYLGPGNHLDNGPPIDDDDEIALRHDEAYETATSPE 42
Y G G G P+D+ D HD+ Y+ A
Sbjct: 27 CYCGAGGS---GTPVDELDRCCKIHDDCYDEAGKKG 59
>1n28_B Phospholipase A2, membrane associated; hydrolase; 1.50A {Homo
sapiens} SCOP: a.133.1.2 PDB: 1n29_A 1kvo_A* 1ayp_A
1db4_A* 1db5_A* 1dcy_A* 1j1a_A* 1bbc_A* 1kqu_A* 1pod_A
1poe_A*
Length = 124
Score = 30.4 bits (68), Expect = 0.24
Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 3/43 (6%)
Query: 3 FPFHNYLGPGNH---LDNGPPIDDDDEIALRHDEAYETATSPE 42
+Y G H G P D D + D Y+
Sbjct: 16 EAALSYGFYGCHCGVGGRGSPKDATDRCCVTQDCCYKRLEKRG 58
>1m8r_A Phospholipase A2; phopholipase A2-metal cation complex, three
alpha, two beta, hydrolase; 1.90A {Gloydius halys}
SCOP: a.133.1.2 PDB: 1m8s_A 1bk9_A* 1psj_A 1ijl_A
1pp2_R
Length = 124
Score = 30.3 bits (68), Expect = 0.26
Identities = 10/41 (24%), Positives = 11/41 (26%), Gaps = 3/41 (7%)
Query: 3 FPFHNYLGPGNHL---DNGPPIDDDDEIALRHDEAYETATS 40
Y G + G P D D HD Y T
Sbjct: 16 SGMQWYSNYGCYCGWGGQGRPQDATDRCCFVHDCCYGKVTG 56
>1mc2_A Acutohaemonlysin, phospholipase A2; YS49-phospholipase A2, snake
venom, toxin; 0.85A {Deinagkistrodon acutus} SCOP:
a.133.1.2 PDB: 1mg6_A 1pa0_A 3i03_A* 3hzd_A 3hzw_A*
3cxi_A* 3i3h_A 3i3i_A 1pc9_A 2q2j_A 3cyl_A* 1qll_A*
1xxs_A* 3qnl_A* 2ok9_A* 3iq3_A* 2h8i_A* 3mlm_A* 1y4l_A*
1clp_A* ...
Length = 122
Score = 30.0 bits (67), Expect = 0.26
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 3 FPFHNYLGPGNHL---DNGPPIDDDDEIALRHDEAYETAT 39
P NY G + G P+D D H Y+ T
Sbjct: 16 NPVKNYGLYGCNCGVGGRGEPLDATDRCCFVHKCCYKKLT 55
>1vip_A Phospholipase A2; hydrolase, anticoagulant; 2.20A {Daboia
russellii russellii} SCOP: a.133.1.2
Length = 121
Score = 30.0 bits (67), Expect = 0.31
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 3 FPFHNYLGPGNH---LDNGPPIDDDDEIALRHDEAYETATS 40
P +Y G + G P D D HD YE S
Sbjct: 16 NPLSSYSDYGCYCGWGGKGKPQDATDRCCFVHDCCYEKVKS 56
>2qhd_A Phospholipase A2; beta sheet, three helices, protein-ligand
complex, hydrolase; HET: DAO; 1.95A {Echis carinatus}
PDB: 2qhe_A 3bjw_A*
Length = 122
Score = 30.0 bits (67), Expect = 0.33
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 3 FPFHNYLGPGNHL---DNGPPIDDDDEIALRHDEAYETAT 39
PF +Y G + GPP+D D L H Y+T
Sbjct: 16 SPFPSYTSYGCFCGGGERGPPLDATDRCCLAHSCCYDTLP 55
>1p7o_A Phospholipase A2, mipla4; pancreatic loop, HYDR; 2.30A
{Micropechis ikaheka} SCOP: a.133.1.2 PDB: 1pwo_A
1ozy_A
Length = 124
Score = 29.6 bits (66), Expect = 0.37
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 3 FPFHNYLGPGNH---LDNGPPIDDDDEIALRHDEAYETAT 39
P + G + +G P+D+ D HD Y+ A
Sbjct: 17 EPLLAFSNYGCYCGKGGSGTPVDELDRCCQTHDNCYDKAE 56
>3dih_A Phospholipase A2 homolog, ammodytin L; phospholipase A2 fold,
myotoxin, secreted, toxin; 2.60A {Vipera ammodytes
ammodytes} PDB: 3ux7_A
Length = 122
Score = 29.6 bits (66), Expect = 0.41
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 3 FPFHNYLGPGNH---LDNGPPIDDDDEIALRHDEAYE 36
P +Y G H + G P D D H Y
Sbjct: 16 NPLTSYSFYGCHCGLGNKGKPKDATDRCCFVHSCCYA 52
>3r0l_D Phospholipase A2 CB; crotoxin, presynaptic neurotoxin, snake
venom, phospholipase heterodimer interface, hydrolase;
1.35A {Crotalus durissus terrificus} PDB: 2qog_B 2qog_A
1bjj_A 1a2a_A
Length = 122
Score = 29.3 bits (65), Expect = 0.45
Identities = 9/40 (22%), Positives = 10/40 (25%), Gaps = 3/40 (7%)
Query: 3 FPFHNYLGPGNH---LDNGPPIDDDDEIALRHDEAYETAT 39
Y G + G P D D HD Y
Sbjct: 16 NAVPFYAFYGCYCGWGGQGRPKDATDRCCFVHDCCYGKLA 55
>2h4c_B Phospholipase A2-II; non-inhibitor acidic PLA2, basic PLA2,
heterodimer, hydrolase; 2.60A {Daboia russellii
siamensis}
Length = 122
Score = 29.2 bits (65), Expect = 0.53
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 3 FPFHNYLGPGNHL---DNGPPIDDDDEIALRHDEAYETATS 40
F F Y+ G + G P D D HD Y
Sbjct: 16 FSFFKYISYGCYCGWGGQGTPKDATDRCCFVHDCCYARVKG 56
>2g58_A Phospholipase A2 VRV-PL-VIIIA; phospholipase A2, diars,
hydrolase-hydrolase inhibitor compl; HET: PHQ; 0.98A
{Daboia russellii pulchella} SCOP: a.133.1.2 PDB:
1cl5_A 1fb2_A* 1jq8_A 1jq9_A 1kpm_A* 1oxl_A* 1fv0_A*
1q7a_A 1skg_A* 1sv3_A* 1sv9_A* 1sxk_A* 1tdv_A 1tg1_A*
1tg4_A 1th6_A* 1sqz_A 1tjq_A* 1tk4_A 1tp2_A* ...
Length = 121
Score = 29.2 bits (65), Expect = 0.57
Identities = 9/41 (21%), Positives = 11/41 (26%), Gaps = 3/41 (7%)
Query: 3 FPFHNYLGPGNH---LDNGPPIDDDDEIALRHDEAYETATS 40
+Y G + G P D D HD Y
Sbjct: 16 LAIPSYSSYGCYCGWGGKGTPKDATDRCCFVHDCCYGNLPD 56
>1oz6_A Phospholipase A2; enzyme, PLA2, hydrolase; 2.60A {Echis
carinatus} SCOP: a.133.1.2
Length = 120
Score = 29.2 bits (65), Expect = 0.59
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 3 FPFHNYLGPGNH---LDNGPPIDDDDEIALRHDEAYETATS 40
P +Y G + GPP D D L HD Y
Sbjct: 16 LPILSYGSYGCYCGWGGQGPPKDATDRCCLVHDCCYTRVGD 56
>2wg7_A PLA2, putative phospholipase A2; hydrolase, secretory PLA2; 2.00A
{Oryza sativa} PDB: 2wg9_A* 2wg8_B 2wg8_A
Length = 130
Score = 28.7 bits (63), Expect = 0.88
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 2 LFPFHNYLGPGNHLDNG-PPIDDDDEIALRHDEAYETAT 39
L + Y G G P D D + HD +T
Sbjct: 33 LLRYGKYCGILYSGCPGERPCDALDACCMVHDHCVDTHN 71
>1m8t_A Phospholipase A2; twinned crystal, alpha, beta, hydrolase; 2.10A
{Ophiophagus hannah} SCOP: a.133.1.2
Length = 119
Score = 28.4 bits (63), Expect = 0.99
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 4 PFHNYLGPGNH---LDNGPPIDDDDEIALRHDEAYETAT 39
P+ +Y G + +G P+D+ D HD Y A
Sbjct: 18 PWWDYSDYGCYCGSGGSGTPVDELDRCCQVHDNCYTQAQ 56
>1jlt_A Phospholipase A2 inhibitor; heterodimer complex, hydrolase,
PLA2-activity; 1.40A {Vipera ammodytes ammodytes} SCOP:
a.133.1.2 PDB: 1vpi_A 1aok_A 1q5t_A 1oqs_A 2h4c_A
Length = 122
Score = 28.5 bits (63), Expect = 1.0
Identities = 7/34 (20%), Positives = 7/34 (20%), Gaps = 3/34 (8%)
Query: 7 NYLGPGNHLDNGPPIDDDDEIALRHDEAYETATS 40
Y G G D D D Y
Sbjct: 26 CYCGWGGQ---ARAQDATDRCCFAQDCCYGRVND 56
>1zlb_A Hypotensive phospholipase A2; Asp49-PLA2, toxin, snake venom,
hydrolase; 0.97A {Bothrops jararacussu} SCOP: a.133.1.2
PDB: 1umv_X 1zl7_A 1z76_A* 1u73_A* 1vap_A 3r0l_A
Length = 122
Score = 28.1 bits (62), Expect = 1.3
Identities = 11/41 (26%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 3 FPFHNYLGPGNH---LDNGPPIDDDDEIALRHDEAYETATS 40
YL G + G P D D HD Y T
Sbjct: 16 SGVLQYLSYGCYCGLGGQGQPTDATDRCCFVHDCCYGKVTG 56
>1g0z_A Phospholipase A2; toxin; 2.18A {Bungarus caeruleus} SCOP:
a.133.1.2 PDB: 1u4j_A* 1g2x_A 2osn_A 1dpy_A 1fe5_A
1tc8_A* 1po8_A*
Length = 118
Score = 28.0 bits (62), Expect = 1.5
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 4 PFHNYLGPGNH---LDNGPPIDDDDEIALRHDEAYETAT 39
+ +Y+G G + +G P+D+ D HD Y A
Sbjct: 16 TWTSYIGYGCYCGYGGSGTPVDELDRCCYTHDHCYNKAA 54
>3jql_A Phospholipase A2 isoform 3; phospholipase A2, hexapeptide,
hydrolase, calcium, disulfide bond, lipid degradation,
metal-binding, secreted; 1.20A {Naja sagittifera} PDB:
1mf4_A 3jq5_A 1ln8_A 3jti_A 3nju_A* 3osh_A* 3q4y_A
1t37_A 1zm6_A 3gci_A 1yxl_A 1oxr_A 1td7_A* 1sz8_A
1a3d_A 1a3f_A 1psh_A 2osh_A 1poa_A 1pob_A* ...
Length = 119
Score = 27.5 bits (61), Expect = 1.9
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 3 FPFHNYLGPGNH---LDNGPPIDDDDEIALRHDEAYETAT 39
+ ++ G + +G P+DD D HD Y A
Sbjct: 16 RSWADFADYGCYCGKGGSGTPVDDLDRCCQTHDNCYNEAE 55
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 5.2
Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 29/130 (22%)
Query: 118 HPMDTIKTRTQTMPDKTMIQIIANTFKLEGFRGFY-KGFLAPMLTTGVTNAIFFGVYGNT 176
H MD +T K ++ + + F + F + +L+ + I + +
Sbjct: 5 HHMDF-ETGEHQYQYKDILSVFEDAFV-DNFDCKDVQDMPKSILSKEEIDHII--MSKDA 60
Query: 177 I---RYLRSISESSEEYRCDGFLATPL---WDWNEFFSGSIAGAIITAVGAPVEAIKTRL 230
+ L S +E F+ L + + + IKT
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF------------------LMSPIKTEQ 102
Query: 231 QANAGNYSMY 240
+ + MY
Sbjct: 103 RQPSMMTRMY 112
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural
genomics, JOIN for structural genomics, JCSG; HET: UNL
PG4 DGI; 1.90A {Bacillus halodurans}
Length = 188
Score = 26.7 bits (59), Expect = 6.5
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 28 ALRHDEAYETATSPEQVRQADIEAIRDFNTNYVATGNWHSVVGAIGLTWKYEVE 81
A+ HD A ++R E + + + H+ GA + + +E
Sbjct: 48 AIFHDYAKFR--DKNEMRTLIREKLSQQDILFYGDELLHAPCGAYYVREEVGIE 99
>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding,
cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_B* 3te5_B*
Length = 113
Score = 25.7 bits (56), Expect = 8.2
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 58 NYVATGNWHSVVGAIGLTWKYEVEQFTGVLYPPVDKS 94
N++ T + + +Y+ + T +LY P++ S
Sbjct: 77 NHLVTSSIKHNTLCVASIVRYKQKYVTQILYTPIESS 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.426
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,954,682
Number of extensions: 234114
Number of successful extensions: 578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 47
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)