RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1347
(245 letters)
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 47.4 bits (111), Expect = 5e-07
Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 18/141 (12%)
Query: 110 GVMGLLVGHPMDTIKTRTQTMPD----------KTMIQIIANTFKLEGFRGFYKGFLAPM 159
+ P++ +K Q K +I + K +GF F++G LA +
Sbjct: 17 AAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANV 76
Query: 160 LTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDWNEFFSGSIAGAIITAV 219
+ T A+ F + + +++ + SG AGA
Sbjct: 77 IRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWR--------YFAGNLASGGAAGATSLCF 128
Query: 220 GAPVEAIKTRLQANAGNYSMY 240
P++ +TRL A+ G +
Sbjct: 129 VYPLDFARTRLAADVGKGAAQ 149
Score = 43.9 bits (102), Expect = 6e-06
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 96 WTPVIQEVLSLYTTGVMGLLVGHPMDTIKTRTQTMPD--------KTMIQIIANTFKLEG 147
+I + T + LV +P DT++ R + K EG
Sbjct: 205 NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEG 264
Query: 148 FRGFYKGFLAPMLTTGVTNAIFFGVY 173
+ F+KG + G+ A +Y
Sbjct: 265 PKAFFKG-AWSNVLRGMGGAFVLVLY 289
Score = 40.9 bits (94), Expect = 8e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 203 WNEFFSGSIAGAIITAVGAPVEAIKTRLQANAGN 236
+F +G +A AI AP+E +K LQ +
Sbjct: 7 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHAS 40
Score = 30.8 bits (68), Expect = 0.14
Identities = 30/153 (19%), Positives = 48/153 (31%), Gaps = 22/153 (14%)
Query: 92 DKSGWTPVIQEVLSLYTTGVMGLLVGHPMDTIKTRTQTMPDKT--------MIQIIANTF 143
K W + S G L +P+D +TR K + I F
Sbjct: 104 HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 163
Query: 144 KLEGFRGFYKGFLAPMLTTGVTNAIFFGVYGNTIRYLRSISESSEEYRCDGFLATPLWDW 203
K +G RG Y+GF + + A +FGVY L +
Sbjct: 164 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--------------KNVHII 209
Query: 204 NEFFSGSIAGAIITAVGAPVEAIKTRLQANAGN 236
+ A+ V P + ++ R+ +G
Sbjct: 210 VSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGR 242
>d1vipa_ a.133.1.2 (A:) Snake phospholipase A2 {Russell's viper
(Vipera russelli) [TaxId: 8707]}
Length = 121
Score = 29.5 bits (66), Expect = 0.16
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 4 PFHNYLGPGNHLDN---GPPIDDDDEIALRHDEAYETATS 40
P +Y G + G P D D HD YE S
Sbjct: 17 PLSSYSDYGCYCGWGGKGKPQDATDRCCFVHDCCYEKVKS 56
>d1bjja_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon
halys) [TaxId: 8714]}
Length = 122
Score = 28.4 bits (63), Expect = 0.32
Identities = 10/34 (29%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 7 NYLGPGNHLDNGPPIDDDDEIALRHDEAYETATS 40
Y G G G P D D HD Y +
Sbjct: 26 CYCGWGGQ---GKPKDGTDRCCFVHDCCYGRLVN 56
>d1p7oa_ a.133.1.2 (A:) Snake phospholipase A2 {Small-eye snake
(Micropechis ikaheka), different isoforms [TaxId:
66188]}
Length = 124
Score = 28.4 bits (63), Expect = 0.37
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 3 FPFHNYLGPGNH---LDNGPPIDDDDEIALRHDEAYETAT 39
P + G + +G P+D+ D HD Y+ A
Sbjct: 17 EPLLAFSNYGCYCGKGGSGTPVDELDRCCQTHDNCYDKAE 56
>d1jiaa_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Agkistrodon
halys) [TaxId: 8714]}
Length = 122
Score = 28.4 bits (63), Expect = 0.43
Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 7 NYLGPGNHLDNGPPIDDDDEIALRHDEAYETATS 40
Y G G G P D D HD YE T
Sbjct: 26 CYCGSGGR---GKPKDATDRCCFVHDCCYEKVTG 56
>d1xv2a_ d.290.1.1 (A:) Hypothetical protein SA2394 {Staphylococcus
aureus [TaxId: 1280]}
Length = 232
Score = 28.6 bits (64), Expect = 0.51
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 121 DTIKTRT---QTMPDKTMIQIIAN--TFKLEGFRGFYKGFLAPMLTTGVTNA 167
+ R Q P +I K + RG GF P L GV +A
Sbjct: 117 KHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSA 168
>d1gmza_ a.133.1.2 (A:) Snake phospholipase A2 {Snake (Bothrops
pirajai), piratoxin III [TaxId: 113192]}
Length = 122
Score = 27.6 bits (61), Expect = 0.67
Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 7 NYLGPGNHLDNGPPIDDDDEIALRHDEAYETATS 40
Y G G G P D D HD Y TS
Sbjct: 26 CYCGVGGR---GGPKDATDRCCFVHDCCYGKLTS 56
>d1jlta_ a.133.1.2 (A:) Snake phospholipase A2 {Sand viper (Vipera
ammodytes meridionalis), vipoxin inhibitor [TaxId:
8704]}
Length = 122
Score = 27.6 bits (61), Expect = 0.67
Identities = 7/40 (17%), Positives = 9/40 (22%), Gaps = 3/40 (7%)
Query: 3 FPFHNYLGPGNHLD---NGPPIDDDDEIALRHDEAYETAT 39
H+Y G + D D D Y
Sbjct: 16 EAVHSYAIYGCYCGWGGQARAQDATDRCCFAQDCCYGRVN 55
>d1m8ta_ a.133.1.2 (A:) Snake phospholipase A2 {King cobra
(Ophiophagus hannah), an acidic isoform [TaxId: 8665]}
Length = 119
Score = 27.5 bits (61), Expect = 0.67
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 3 FPFHNYLGPGNH---LDNGPPIDDDDEIALRHDEAYETA 38
P+ +Y G + +G P+D+ D HD Y A
Sbjct: 17 IPWWDYSDYGCYCGSGGSGTPVDELDRCCQVHDNCYTQA 55
>d1mc2a_ a.133.1.2 (A:) Snake phospholipase A2 {Hundred-pace snake
(Agkistrodon acutus) [TaxId: 36307]}
Length = 122
Score = 27.6 bits (61), Expect = 0.69
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 8 YLGPGNHLDNGPPIDDDDEIALRHDEAYETAT 39
G G G P+D D H Y+ T
Sbjct: 27 NCGVGGR---GEPLDATDRCCFVHKCCYKKLT 55
>d1ppaa_ a.133.1.2 (A:) Snake phospholipase A2 {Eastern
cottonmouth snake (Agkistrodon piscivorus piscivorus)
[TaxId: 8716]}
Length = 121
Score = 27.6 bits (61), Expect = 0.76
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 8 YLGPGNHLDNGPPIDDDDEIALRHDEAYETAT 39
G G+ G P D D H Y+ T
Sbjct: 27 NCGWGHR---GQPKDATDRCCFVHKCCYKKLT 55
>d2g58a1 a.133.1.2 (A:1-133) Snake phospholipase A2 {Snake (Daboia
russellii pulchella), different isoforms [TaxId:
97228]}
Length = 121
Score = 27.6 bits (61), Expect = 0.81
Identities = 10/33 (30%), Positives = 10/33 (30%), Gaps = 3/33 (9%)
Query: 7 NYLGPGNHLDNGPPIDDDDEIALRHDEAYETAT 39
Y G G G P D D HD Y
Sbjct: 26 CYCGWGGK---GTPKDATDRCCFVHDCCYGNLP 55
>d1n28a_ a.133.1.2 (A:) Phospholipase A2 {Human (Homo sapiens),
synovial fluid [TaxId: 9606]}
Length = 124
Score = 27.6 bits (61), Expect = 0.84
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 3/35 (8%)
Query: 7 NYLGPGNHLDNGPPIDDDDEIALRHDEAYETATSP 41
+ G G G P D D + D Y+
Sbjct: 26 CHCGVGGR---GSPKDATDRCCVTQDCCYKRLEKR 57
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 28.4 bits (62), Expect = 0.91
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 38 ATSPEQVRQADIEAIRDFNTNYVATGNWHSVVGAIGLTWKYEVEQ 82
AT+P V E + F T GN S G + V+
Sbjct: 10 ATTP--VDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDI 52
>d1ae7a_ a.133.1.2 (A:) Snake phospholipase A2 {Mainland tiger
snake (Notechis scutatus scutatus), notexin [TaxId:
8663]}
Length = 119
Score = 26.8 bits (59), Expect = 1.4
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 3 FPFHNYLGPGNHLD---NGPPIDDDDEIALRHDEAYETA 38
P +Y+ G + +G P+D+ D HD+ Y+ A
Sbjct: 17 RPTWHYMDYGCYCGAGGSGTPVDELDRCCKIHDDCYDEA 55
>d1zlba1 a.133.1.2 (A:1-122) Snake phospholipase A2 {Jararacussu
(Bothrops jararacussu) [TaxId: 8726]}
Length = 122
Score = 26.8 bits (59), Expect = 1.5
Identities = 11/33 (33%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 8 YLGPGNHLDNGPPIDDDDEIALRHDEAYETATS 40
Y G G G P D D HD Y T
Sbjct: 27 YCGLGGQ---GQPTDATDRCCFVHDCCYGKVTG 56
>d1m1la_ d.260.1.1 (A:) Suppressor of Fused, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 25.2 bits (55), Expect = 7.6
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 3 FPFH--NYLGPGNHLDNGPPIDDDD 25
+ F N G+H+ P+D+ +
Sbjct: 121 YVFQSENTFCSGDHVSWHSPLDNSE 145
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.426
Gapped
Lambda K H
0.267 0.0414 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 958,232
Number of extensions: 43078
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 24
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)