BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13470
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 106/166 (63%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPH 79
+ P+ C CGK FSR DH H HTGE P++C C K+F+ K+ L H R HTGE P+
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 80 HCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTY 139
C C KSF+++ ++ H+R HTGE P+ C C K+F++ HL H R HTGE P+KC
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE 138
Query: 140 CMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
C KSF+R+++L H R HTGE P+ C C ++F+R++ L H R H
Sbjct: 139 CGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 103/175 (58%)
Query: 67 VNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHV 126
V GE P+ C C KSF+R DH+ H+R HTGE P+ C C K+F+ K L H
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Query: 127 RRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHL 186
R HTGE P+KC C KSF+++ +L H R HTGE P++C C ++F++ HL+ H R H
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 187 PGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
+ C C + F+ + +L H R+H + PY C +CGK+F + L HQR+H
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 101/173 (58%)
Query: 41 HVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQ 100
GE P+ C C K+F+R +HL H R HTGE P+ C C KSF+ K + H+R
Sbjct: 12 QAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Query: 101 HTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGE 160
HTGE P+ C C K+F+++ +L H R HTGE P+ C C KSF++ HL H R HTGE
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 161 SPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSH 213
P+ C C ++F+R+++L H R H + C C + F+ + +L H R+H
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 141 bits (355), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 103 GETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
GE P+ C C K+F+R DHL H R HTGE P+KC C KSF+ K+ LT H R HTGE P
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 163 HSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCT 222
+ C C ++F+++ +L+ H R H + C C + F+ A L H R+H + PY C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 223 DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTNGITN 279
+CGK+F + NL HQR+H ++PY C C K F + L H+R+HT T+
Sbjct: 138 ECGKSFSREDNLHTHQRTHT----GEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS 190
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 94/147 (63%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
+R+H + P+ C CGK FS K H HTGE P++C C K+F+++ +L H R H
Sbjct: 41 QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
TGE P+ C C KSF++ H+ H+R HTGE P+ C C K+F+R+D+L H R HTGE
Sbjct: 101 TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK 160
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGE 160
P+KC C KSF+R++ L H R HTG+
Sbjct: 161 PYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 62/95 (65%)
Query: 10 IHAERRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNH 69
+ A +R+H + P+ C CGK FS+ H + H HTGE P++C C K+F+R+++L H
Sbjct: 93 LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Query: 70 VRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
R HTGE P+ C C KSF+R+D + H+R HTG+
Sbjct: 153 QRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 204 ASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDK 263
+S + P + PY C +CGK+F +L HQR+H ++PY C C K F DK
Sbjct: 7 SSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHT----GEKPYKCPECGKSFSDK 62
Query: 264 GHLVSHRRSHTN 275
L H+R+HT
Sbjct: 63 KDLTRHQRTHTG 74
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 50 PHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGET 105
P C Y C K + + HL H R+HTGE P+ C++ C + F+R D + H+R+HTG
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNH 153
PF C+ C + F+R DHL H R HTGE P C + C K F R + L H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 22 PFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGES 77
PF C C K + + H + H HTGE P++CD+ C + F+R + L H R+HTG
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNH 125
P C C + F+R DH+ H R HTGE PF C++ C K F R D LV H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 74 TGESPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRH 129
+ + P C Y C K + + H+ H R+HTGE P+ C + C + F+R D L H RRH
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEF--CDRTFTRKEHLKRH 181
TG P +C C + F+R +HL H R HTGE P SC + C + F R + L RH
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 106 PFPCQY--CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHTGES 161
PF C Y C K + + HL H R+HTGE P++C + C + F+R + L H R+HTG
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCII--CTEPFNDKASLLEH 209
P C+ C R F+R +HLK H R H F+C C + F L+ H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 15 RSHITDSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQ 72
R H + P+ CD C + FSR D K H HTG P +C C + F+R +HL H R
Sbjct: 29 RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
Query: 73 HTGESPHHCNY--CAKSFTRKDHMVYHERQH 101
HTGE P C + C K F R D +V H H
Sbjct: 89 HTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 130 TGESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEF--CDRTFTRKEHLKRHLRQH 185
+ + P C Y C K + + HL H R+HTGE P+ C+F C+R F+R + LKRH R+H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 186 LPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCT--DCGKAFRLKGNLMFHQRSH 241
F C C F+ L H R+H + P+ C C K F L+ H H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHLVNH 69
+R H PF C C + FSR DH K H HTGE P C + C K F R + LV H
Sbjct: 58 QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 188 GSEFNCIICTEPF-NDKASLLEHLRSHPR----DCPYVC--TDCGKAFRLKGNLMFHQRS 240
SE +C P N + L HL+ H R + PY C DC + F L HQR
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 241 HQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
H G+ +P+ C C + F HL +H R+HT
Sbjct: 61 HT-GV---KPFQCKTCQRKFSRSDHLKTHTRTHTG 91
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 104 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
E P+ C + C + F+R D L H+R HTG+ P +C CM++F+R +HLT HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQHL 186
P +C+ C R F R + KRH + HL
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 48 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
E P+ C + C + F+R + L H+R HTG+ P C C ++F+R DH+ H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRH 129
PF C C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 76 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E P+ C C + F+R D + H R HTG+ PF C+ C + F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 134 PHKCTYCMKSFT----RKEHLTNHIRQ 156
P C C + F RK H H+RQ
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 20 DSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+ P+ C + C + FSR D H+ HTG+ P +C C + F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 78 PHHCNYCAKSFTRKDHMVYHERQH 101
P C+ C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 132 ESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGS 189
E P+ C C + F+R + LT HIR HTG+ P C C R F+R +HL H+R H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 190 EFNCIICTEPFNDKASLLEHLRSHPR 215
F C IC F H + H R
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLR 87
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 160 ESPHSC--EFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDC 217
E P++C E CDR F+R + L RH+R H F C IC F+ L H+R+H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 218 PYVCTDCGKAF 228
P+ C CG+ F
Sbjct: 62 PFACDICGRKF 72
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
R H PF C IC + FSR DH H+ HTGE P CD C + F R + H + H
Sbjct: 27 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDL 255
C F+ L H+R H P+ C C + F +L H R+H ++P+ CD+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG----EKPFACDI 67
Query: 256 CPKDF 260
C + F
Sbjct: 68 CGRKF 72
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 218 PYVC--TDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
PY C C + F L H R H +P+ C +C ++F HL +H R+HT
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTG----QKPFQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 51 HRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETP 106
H CDY C KT+T+ HL H+R HTGE P+HC++ C F R D + H R+HTG P
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 107 FPCQYCPKAFTRKDHLVNHVRRH 129
F CQ C +AF+R DHL H++RH
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 109 CQY--CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHS 164
C Y C K +T+ HL H+R HTGE P+ C + C F R + LT H R+HTG P
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 165 CEFCDRTFTRKEHLKRHLRQHL 186
C+ CDR F+R +HL H+++H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRHF 90
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 25 CDI--CGKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHH 80
CD CGK +++ H K H+ HTGE P+ CD+ C F R + L H R+HTG P
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 81 CNYCAKSFTRKDHMVYHERQH 101
C C ++F+R DH+ H ++H
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 133 SPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEF--CDRTFTRKEHLKRHLRQHLPG 188
+ H C Y C K++T+ HL H+R HTGE P+ C++ C F R + L RH R+H
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 189 SEFNCIICTEPFNDKASLLEHLRSH 213
F C C F+ L H++ H
Sbjct: 65 RPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 10 IHAERRSHITDSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLV 67
+ A R+H + P+HCD CG F+R D H HTG P +C C + F+R +HL
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 83
Query: 68 NHVRQH 73
H+++H
Sbjct: 84 LHMKRH 89
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 161 SPHSCEF--CDRTFTRKEHLKRHLRQHLPGSEFNCII--CTEPFNDKASLLEHLRSHPRD 216
+ H+C++ C +T+T+ HLK HLR H ++C C F L H R H
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 217 CPYVCTDCGKAFRLKGNLMFHQRSH 241
P+ C C +AF +L H + H
Sbjct: 65 RPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCT--DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
C + + + L HLR+H + PY C CG F L H R H RP+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH----TGHRPFQC 69
Query: 254 DLCPKDFIDKGHLVSHRRSH 273
C + F HL H + H
Sbjct: 70 QKCDRAFSRSDHLALHMKRH 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 104 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
E P+ C + C + F+R D L H+R HTG+ P +C CM++F+R +HLT HIR HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQHL 186
P +C+ C R F R + KRH + HL
Sbjct: 61 PFACDICGRKFARSDERKRHTKIHL 85
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 48 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
E P+ C + C + F+R + L H+R HTG+ P C C ++F+R DH+ H R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRH 129
PF C C + F R D H + H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 20 DSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+ P+ C + C + FSR D H+ HTG+ P +C C + F+R +HL H+R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 78 PHHCNYCAKSFTRKDHMVYHERQH 101
P C+ C + F R D H + H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 76 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E P+ C C + F+R D + H R HTG+ PF C+ C + F+R DHL H+R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 134 PHKCTYCMKSFT----RKEHLTNHIRQ 156
P C C + F RK H H+RQ
Sbjct: 61 PFACDICGRKFARSDERKRHTKIHLRQ 87
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 132 ESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGS 189
E P+ C C + F+R + LT HIR HTG+ P C C R F+R +HL H+R H
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 190 EFNCIICTEPFNDKASLLEHLRSHPR 215
F C IC F H + H R
Sbjct: 61 PFACDICGRKFARSDERKRHTKIHLR 86
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 160 ESPHSC--EFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDC 217
E P++C E CDR F+R + L RH+R H F C IC F+ L H+R+H +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 218 PYVCTDCGKAF 228
P+ C CG+ F
Sbjct: 61 PFACDICGRKF 71
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
R H PF C IC + FSR DH H+ HTGE P CD C + F R + H + H
Sbjct: 26 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDL 255
C F+ L H+R H P+ C C + F +L H R+H ++P+ CD+
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG----EKPFACDI 66
Query: 256 CPKDF 260
C + F
Sbjct: 67 CGRKF 71
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 218 PYVC--TDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
PY C C + F L H R H +P+ C +C ++F HL +H R+HT
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTG----QKPFQCRICMRNFSRSDHLTTHIRTHTG 58
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 104 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
E P+ C + C + F+R D L H+R HTG+ P +C CM++F+R +HLT HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQHL 186
P +C+ C R F R + KRH + HL
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 48 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
E P+ C + C + F+R + L H+R HTG+ P C C ++F+R DH+ H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRH 129
PF C C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 20 DSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+ P+ C + C + FSR D H+ HTG+ P +C C + F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 78 PHHCNYCAKSFTRKDHMVYHERQH 101
P C+ C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 76 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E P+ C C + F+R D + H R HTG+ PF C+ C + F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQH 157
P C C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 132 ESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGS 189
E P+ C C + F+R + LT HIR HTG+ P C C R F+R +HL H+R H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 190 EFNCIICTEPFNDKASLLEHLRSHPR 215
F C IC F H + H R
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLR 87
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 160 ESPHSC--EFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDC 217
E P++C E CDR F+R + L RH+R H F C IC F+ L H+R+H +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 218 PYVCTDCGKAF 228
P+ C CG+ F
Sbjct: 62 PFACDICGRKF 72
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
R H PF C IC + FSR DH H+ HTGE P CD C + F R + H + H
Sbjct: 27 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDL 255
C F+ L H+R H P+ C C + F +L H R+H ++P+ CD+
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG----EKPFACDI 67
Query: 256 CPKDF 260
C + F
Sbjct: 68 CGRKF 72
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 218 PYVC--TDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
PY C C + F L H R H +P+ C +C ++F HL +H R+HT
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTG----QKPFQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 51 HRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETP 106
H CDY C KT+T+ HL H+R HTGE P+HC++ C F R D + H R+HTG P
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 107 FPCQYCPKAFTRKDHLVNHVRRH 129
F CQ C +AF+R DHL H++RH
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 109 CQY--CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHS 164
C Y C K +T+ HL H+R HTGE P+ C + C F R + LT H R+HTG P
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 165 CEFCDRTFTRKEHLKRHLRQHL 186
C+ CDR F+R +HL H+++H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRHF 89
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 25 CDI--CGKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHH 80
CD CGK +++ H K H+ HTGE P+ CD+ C F R + L H R+HTG P
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 81 CNYCAKSFTRKDHMVYHERQH 101
C C ++F+R DH+ H ++H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 133 SPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEF--CDRTFTRKEHLKRHLRQHLPG 188
+ H C Y C K++T+ HL H+R HTGE P+ C++ C F R + L RH R+H
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 189 SEFNCIICTEPFNDKASLLEHLRSH 213
F C C F+ L H++ H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 10 IHAERRSHITDSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLV 67
+ A R+H + P+HCD CG F+R D H HTG P +C C + F+R +HL
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 68 NHVRQH 73
H+++H
Sbjct: 83 LHMKRH 88
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 161 SPHSCEF--CDRTFTRKEHLKRHLRQHLPGSEFNCII--CTEPFNDKASLLEHLRSHPRD 216
+ H+C++ C +T+T+ HLK HLR H ++C C F L H R H
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 217 CPYVCTDCGKAFRLKGNLMFHQRSH 241
P+ C C +AF +L H + H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCT--DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
C + + + L HLR+H + PY C CG F L H R H RP+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH----TGHRPFQC 68
Query: 254 DLCPKDFIDKGHLVSHRRSH 273
C + F HL H + H
Sbjct: 69 QKCDRAFSRSDHLALHMKRH 88
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 104 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
E P+ C + C + F+R L H+R HTG+ P +C CM++F+R +HLT HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQHL 186
P +C+ C R F R + KRH + HL
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 48 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
E P+ C + C + F+R L H+R HTG+ P C C ++F+R DH+ H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRH 129
PF C C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 20 DSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+ P+ C + C + FSR H+ HTG+ P +C C + F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 78 PHHCNYCAKSFTRKDHMVYHERQH 101
P C+ C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 76 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E P+ C C + F+R + H R HTG+ PF C+ C + F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 134 PHKCTYCMKSFT----RKEHLTNHIRQ 156
P C C + F RK H H+RQ
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 132 ESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGS 189
E P+ C C + F+R LT HIR HTG+ P C C R F+R +HL H+R H
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 190 EFNCIICTEPFNDKASLLEHLRSHPR 215
F C IC F H + H R
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLR 87
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
R H PF C IC + FSR DH H+ HTGE P CD C + F R + H + H
Sbjct: 27 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 160 ESPHSC--EFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDC 217
E P++C E CDR F+R L RH+R H F C IC F+ L H+R+H +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 218 PYVCTDCGKAF 228
P+ C CG+ F
Sbjct: 62 PFACDICGRKF 72
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDL 255
C F+ A L H+R H P+ C C + F +L H R+H ++P+ CD+
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG----EKPFACDI 67
Query: 256 CPKDF 260
C + F
Sbjct: 68 CGRKF 72
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 218 PYVC--TDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
PY C C + F L H R H +P+ C +C ++F HL +H R+HT
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTG----QKPFQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 104 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
E P+ C + C + F+R L H+R HTG+ P +C CM++F+R +HLT HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQHL 186
P +C+ C R F R + KRH + HL
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 48 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
E P+ C + C + F+R L H+R HTG+ P C C ++F+R DH+ H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRH 129
PF C C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 76 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E P+ C C + F+R + H R HTG+ PF C+ C + F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 134 PHKCTYCMKSFT----RKEHLTNHIRQ 156
P C C + F RK H H+RQ
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 20 DSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+ P+ C + C + FSR H+ HTG+ P +C C + F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 78 PHHCNYCAKSFTRKDHMVYHERQH 101
P C+ C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 132 ESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGS 189
E P+ C C + F+R LT HIR HTG+ P C C R F+R +HL H+R H
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 190 EFNCIICTEPFNDKASLLEHLRSHPR 215
F C IC F H + H R
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLR 87
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
R H PF C IC + FSR DH H+ HTGE P CD C + F R + H + H
Sbjct: 27 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 160 ESPHSC--EFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDC 217
E P++C E CDR F+R L RH+R H F C IC F+ L H+R+H +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 218 PYVCTDCGKAF 228
P+ C CG+ F
Sbjct: 62 PFACDICGRKF 72
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDL 255
C F+ A L H+R H P+ C C + F +L H R+H ++P+ CD+
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG----EKPFACDI 67
Query: 256 CPKDF 260
C + F
Sbjct: 68 CGRKF 72
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 218 PYVC--TDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
PY C C + F +L H R H +P+ C +C ++F HL +H R+HT
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTG----QKPFQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 104 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
E P+ C + C + F++ L H+R HTG+ P +C CM++F+R +HLT HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQHL 186
P +C+ C R F R + KRH + HL
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 48 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
E P+ C + C + F++ L H+R HTG+ P C C ++F+R DH+ H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRH 129
PF C C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 76 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E P+ C C + F++ + H R HTG+ PF C+ C + F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 134 PHKCTYCMKSFT----RKEHLTNHIRQ 156
P C C + F RK H H+RQ
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 20 DSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+ P+ C + C + FS+ H+ HTG+ P +C C + F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 78 PHHCNYCAKSFTRKDHMVYHERQH 101
P C+ C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 132 ESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGS 189
E P+ C C + F++ LT HIR HTG+ P C C R F+R +HL H+R H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 190 EFNCIICTEPFNDKASLLEHLRSHPR 215
F C IC F H + H R
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLR 87
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
R H PF C IC + FSR DH H+ HTGE P CD C + F R + H + H
Sbjct: 27 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 160 ESPHSC--EFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDC 217
E P++C E CDR F++ L RH+R H F C IC F+ L H+R+H +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 218 PYVCTDCGKAF 228
P+ C CG+ F
Sbjct: 62 PFACDICGRKF 72
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDL 255
C F+ SL H+R H P+ C C + F +L H R+H ++P+ CD+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG----EKPFACDI 67
Query: 256 CPKDF 260
C + F
Sbjct: 68 CGRKF 72
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 218 PYVC--TDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
PY C C + F G+L H R H +P+ C +C ++F HL +H R+HT
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTG----QKPFQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 104 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
E P+ C + C + F+ +L H+R HTG+ P +C CM++F+R +HLT HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQHL 186
P +C+ C R F R + KRH + HL
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 48 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
E P+ C + C + F+ +L H+R HTG+ P C C ++F+R DH+ H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRH 129
PF C C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 76 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E P+ C C + F+ ++ H R HTG+ PF C+ C + F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 134 PHKCTYCMKSFT----RKEHLTNHIRQ 156
P C C + F RK H H+RQ
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 20 DSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+ P+ C + C + FS + H+ HTG+ P +C C + F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 78 PHHCNYCAKSFTRKDHMVYHERQH 101
P C+ C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 132 ESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGS 189
E P+ C C + F+ +LT HIR HTG+ P C C R F+R +HL H+R H
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 190 EFNCIICTEPFNDKASLLEHLRSHPR 215
F C IC F H + H R
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLR 87
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
R H PF C IC + FSR DH H+ HTGE P CD C + F R + H + H
Sbjct: 27 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 160 ESPHSC--EFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDC 217
E P++C E CDR F+ +L RH+R H F C IC F+ L H+R+H +
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 218 PYVCTDCGKAF 228
P+ C CG+ F
Sbjct: 62 PFACDICGRKF 72
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDL 255
C F+D ++L H+R H P+ C C + F +L H R+H ++P+ CD+
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG----EKPFACDI 67
Query: 256 CPKDF 260
C + F
Sbjct: 68 CGRKF 72
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 218 PYVC--TDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
PY C C + F NL H R H +P+ C +C ++F HL +H R+HT
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTG----QKPFQCRICMRNFSRSDHLTTHIRTHTG 59
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPF 107
E P++C C K+F++ +L H R HTGE P+ C C KSF++ + H+R HTGE P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 108 PCQYCPKAFTRKDHLVNHVRRH 129
C C K+F+R DHL H R H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 52/82 (63%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPH 135
E P+ C C KSF++ ++ H+R HTGE P+ C C K+F++ L H R HTGE P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 136 KCTYCMKSFTRKEHLTNHIRQH 157
KC C KSF+R +HL+ H R H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 50/82 (60%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPH 79
+ P+ C CGK FS+ + + H HTGE P++C C K+F++ L H R HTGE P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 80 HCNYCAKSFTRKDHMVYHERQH 101
C C KSF+R DH+ H+R H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPH 163
E P+ C C K+F++ +L H R HTGE P+KC C KSF++ L H R HTGE P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 164 SCEFCDRTFTRKEHLKRHLRQH 185
C C ++F+R +HL RH R H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 191 FNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRP 250
+ C C + F+ ++L +H R+H + PY C +CGK+F +L HQR+H ++P
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH----TGEKP 60
Query: 251 YHCDLCPKDFIDKGHLVSHRRSHTN 275
Y C C K F HL H+R+H N
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQN 85
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 160 ESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPY 219
E P+ C C ++F++ +L++H R H + C C + F+ + L +H R+H + PY
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 220 VCTDCGKAFRLKGNLMFHQRSHQ 242
C +CGK+F +L HQR+HQ
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQ 84
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEF 191
E P+KC C KSF++ +L H R HTGE P+ C C ++F++ L++H R H +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 192 NCIICTEPFNDKASLLEHLRSH 213
C C + F+ L H R+H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 10 IHAERRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNH 69
+ +R+H + P+ C CGK FS+ + H HTGE P++C C K+F+R +HL H
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRH 79
Query: 70 VRQH 73
R H
Sbjct: 80 QRTH 83
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
PY C +CGK+F NL HQR+H ++PY C C K F L H+R+HT
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTH----TGEKPYKCPECGKSFSQSSDLQKHQRTHTG 57
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 247 MDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
M++PY C C K F +L H+R+HT
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTG 29
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 51 HRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETP 106
H CDY C K +T+ HL H+R HTGE P+ C + C F R D + H R+HTG P
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 107 FPCQYCPKAFTRKDHLVNHVRRH 129
F C C ++F+R DHL H++RH
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRH 98
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 109 CQY--CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHS 164
C Y C K +T+ HL H+R HTGE P+KCT+ C F R + LT H R+HTG P
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 165 CEFCDRTFTRKEHLKRHLRQH 185
C C+R+F+R +HL H+++H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRH 98
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 13 ERRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHLVNHV 70
+RR H D P C K +++ H K H+ HTGE P++C + C F R + L H
Sbjct: 12 KRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY 67
Query: 71 RQHTGESPHHCNYCAKSFTRKDHMVYHERQH 101
R+HTG P C C +SF+R DH+ H ++H
Sbjct: 68 RKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 135 HKCTY--CMKSFTRKEHLTNHIRQHTGESPHSC--EFCDRTFTRKEHLKRHLRQHLPGSE 190
H C Y C K +T+ HL H+R HTGE P+ C E CD F R + L RH R+H
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 191 FNCIICTEPFNDKASLLEHLRSH 213
F C +C F+ L H++ H
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRH 98
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 10 IHAERRSHITDSPFHC--DICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLV 67
+ A R+H + P+ C + C F+R D H HTG P +C C ++F+R +HL
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 68 NHVRQH 73
H+++H
Sbjct: 93 LHMKRH 98
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCT--DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
CT+ + + L HLR+H + PY CT C F L H R H +P+ C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA----KPFQC 78
Query: 254 DLCPKDFIDKGHLVSHRRSHTN 275
+C + F HL H + H N
Sbjct: 79 GVCNRSFSRSDHLALHMKRHQN 100
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHT--- 102
+G + C C K F K +L H R+HTGE P C C K + RK++++ HE ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 103 GETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNH-IRQHTGES 161
E F C C + F R+ L H+ HTGE P+KC+ C + F +K+ L +H I+ H+G S
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHT--- 130
+G S C C K F K ++ H R+HTGE PF C C K + RK++L+ H R+
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 131 GESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHL 182
E C+ C ++F R+ L H+ HTGE P+ C C + F +K+ L+ H+
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHT---GE 76
S C C K F K + K H HTGE P C C K + RKE+L+ H ++ E
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 77 SPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNH-VRRHTGES 133
C+ C ++F R+ + H HTGE P+ C C + F +K L +H ++ H+G S
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRH-LRQHLPG 188
+G S +C C K F K +L H R+HTGE P C C + + RKE+L H R +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 189 SE--FNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFH 237
SE F C +C E F + L H+ SH + PY C+ C + F K +L H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT--- 158
+G + C C K F K +L H R+HTGE P +C C K + RKE+L H ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 159 GESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHL 210
E +C C TF R+ L+ H+ H + C C++ F K L H+
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVM---WHTGETPHRCDYCAKTFTRKEHLVNHVR 71
R H + PF C CGK + RK++ H + E C C +TF R+ L H+
Sbjct: 28 RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV 87
Query: 72 QHTGESPHHCNYCAKSFTRKDHMVYH 97
HTGE P+ C+ C++ F +K + H
Sbjct: 88 SHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 19 TDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNH-VRQHTGES 77
++ F C +C + F R+ + H++ HTGE P++C C++ F +K+ L +H ++ H+G S
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 189 SEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMD 248
S C C + F K L H R H + P+ C CGK + K NL+ H+ + +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS-E 64
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHTNGITNK 280
+ + C +C + F + L H SHT + K
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYK 96
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 104 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
E P+ C + C + F++K +L H+R HTG+ P +C CM++F+++ L HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 162 PHSCEFCDRTF----TRKEHLKRHLRQ 184
P +C+ C R F TR H K HLRQ
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 20 DSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+ P+ C + C + FS+K + H+ HTG+ P +C C + F+++ L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 78 PHHCNYCAKSF----TRKDHMVYHERQ 100
P C+ C + F TR H H RQ
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 76 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E P+ C C + F++K ++ H R HTG+ PF C+ C + F+++ L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 134 PHKCTYCMKSF----TRKEHLTNHIRQ 156
P C C + F TR H H+RQ
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 48 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
E P+ C + C + F++K +L H+R HTG+ P C C ++F+++ + H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 106 PFPCQYCPKAF----TRKDHLVNHVRR 128
PF C C + F TR H H+R+
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 160 ESPHSC--EFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDC 217
E P++C E CDR F++K +L H+R H F C IC F+ +ASL H+R+H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 218 PYVCTDCGKAF 228
P+ C CG+ F
Sbjct: 62 PFACDICGRKF 72
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 132 ESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGS 189
E P+ C C + F++K +L HIR HTG+ P C C R F+++ L H+R H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 190 EFNCIICTEPFNDKASLLEHLRSHPR 215
F C IC F + H + H R
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLR 87
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTF----TRKEHLVNHV 70
R H PF C IC + FS++ H+ HTGE P CD C + F TR H H+
Sbjct: 27 RIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHL 86
Query: 71 RQ 72
RQ
Sbjct: 87 RQ 88
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDL 255
C F+ K +L H+R H P+ C C + F + +L H R+H ++P+ CD+
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG----EKPFACDI 67
Query: 256 CPKDF 260
C + F
Sbjct: 68 CGRKF 72
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 218 PYVC--TDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
PY C C + F K NL H R H +P+ C +C ++F + L +H R+HT
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTG----QKPFQCRICMRNFSQQASLNAHIRTHTG 59
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 1 MLHVPPPPTIHAERRSHITDSPFHCDICGKYFS----RKDHYKNHV 42
M + +++A R+H + PF CDICG+ F+ R H K H+
Sbjct: 41 MRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHL 86
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
F C ICGK F R H++ H+ P+ C YC K F +K + H HTGE PH C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 83 YCAKSFTRKDHMVYHERQHTG 103
C K+F++ +++ H R+HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 45/79 (56%)
Query: 81 CNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYC 140
C C KSF R + H H+ P+PCQYC K F +K + H HTGE PHKC C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 141 MKSFTRKEHLTNHIRQHTG 159
K+F++ +L H R+HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 44/79 (55%)
Query: 53 CDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYC 112
C C K+F R L H+ H+ P+ C YC K F +K M H HTGE P CQ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 113 PKAFTRKDHLVNHVRRHTG 131
KAF++ +L+ H R+HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
F C+ C K+F R L H+ H+ P+ C YC K F +K + H HTGE PH C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 167 FCDRTFTRKEHLKRHLRQH 185
C + F++ +L H R+H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 10 IHAERRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNH 69
IH++ R P+ C CGK F +K K H HTGE PH+C C K F++ +L+ H
Sbjct: 23 IHSDTR------PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Query: 70 VRQHTG 75
R+HTG
Sbjct: 77 SRKHTG 82
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 190 EFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDR 249
F+C IC + F ++L HL H PY C CGK F K ++ H H ++
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH----TGEK 56
Query: 250 PYHCDLCPKDFIDKGHLVSHRRSHTN 275
P+ C +C K F +L++H R HT
Sbjct: 57 PHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 137 CTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIIC 196
C C KSF R L+ H+ H+ P+ C++C + F +K +K+H H C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 197 TEPFNDKASLLEHLRSH 213
+ F+ ++L+ H R H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 165 CEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDC 224
C+ C ++F R L HL H + C C + F+ K+ + +H H + P+ C C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 225 GKAFRLKGNLMFHQRSH 241
GKAF NL+ H R H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 79/144 (54%), Gaps = 15/144 (10%)
Query: 84 CAKSFTRKDHMVYH---ERQHTGETPFPCQY--CPKA---FTRKDHLVNHVRRHTGESPH 135
C++ F ++ +V+H E H F C + C + F + LV H+RRHTGE PH
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 136 KCTY--CMKSFTRKEHLTNHIRQHTGESPHSC--EFCDRTFTRKEHLKRHL-RQHLPGSE 190
KCT+ C KS++R E+L H+R HTGE P+ C E C + F+ +H R H
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 191 FNCII--CTEPFNDKASLLEHLRS 212
+ C + CT+ + D +SL +H+++
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 15/151 (9%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVR-QHT-GESPH---HCNYCAKS---FTRKDHMVYHER 99
ET R D C++ F +E LV+H+ +H GE H C++ F + +V H R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 100 QHTGETPFPCQY--CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHI- 154
+HTGE P C + C K+++R ++L H+R HTGE P+ C + C K+F+ H
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 155 RQHTGESPHSCEF--CDRTFTRKEHLKRHLR 183
R H+ E P+ C+ C + +T L++H++
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 41 HVMWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVY 96
H+ HTGE PH+C + C K+++R E+L H+R HTGE P+ C + C+K+F+
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK 117
Query: 97 HE-RQHTGETPFPCQY--CPKAFTRKDHLVNHVR 127
H+ R H+ E P+ C+ C K +T L HV+
Sbjct: 118 HQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 47/176 (26%)
Query: 112 CPKAFTRKDHLVNHVRRHTGESPHK--------CTYCMKSFTRKEHLTNHIRQHTGESPH 163
C + F ++ LV+H+ K C+ ++ F + L H+R+HTGE PH
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 164 SCEF--CDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVC 221
C F C ++++R E+LK HLRSH + PY+C
Sbjct: 69 KCTFEGCRKSYSRLENLK----------------------------THLRSHTGEKPYMC 100
Query: 222 --TDCGKAFRLKGNLMFHQ-RSHQKGMPMDRPYHCDL--CPKDFIDKGHLVSHRRS 272
C KAF + HQ R+H ++PY C L C K + D L H ++
Sbjct: 101 EHEGCSKAFSNASDRAKHQNRTHSN----EKPYVCKLPGCTKRYTDPSSLRKHVKT 152
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
+G + C+ C K F HL H H+GE P+ C C F RKD M YH R H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 106 --PFPCQYCPKAFTRKDHLVNHVRR-HTGES 133
P+ CQ C K F+R DHL H+++ H+G S
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 21 SPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGE--SP 78
S C+ICGK F H H + H+GE P+ C C F RK+ + HVR H G P
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 79 HHCNYCAKSFTRKDHMVYHERQ-HTGET 105
+ C C K F+R DH+ H +Q H+G +
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGE- 160
+G + C+ C K F HL H H+GE P+ C C F RK+ ++ H+R H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 161 -SPHSCEFCDRTFTRKEHLKRHLRQ 184
P+ C+ C + F+R +HL H++Q
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 16 SHITDSPFHCDICGKYFSRKDHYKNHVMWHTGET--PHRCDYCAKTFTRKEHLVNHVRQ- 72
SH + P+ C +CG F RKD HV H G P+ C C K F+R +HL H++Q
Sbjct: 29 SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQV 88
Query: 73 HTGES 77
H+G S
Sbjct: 89 HSGPS 93
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 158 TGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDC 217
+G S +CE C + F HL RH H ++C +C F K + H+RSH
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 218 --PYVCTDCGKAF 228
PY+C CGK F
Sbjct: 63 GKPYICQSCGKGF 75
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 189 SEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMD 248
S C IC + F D L H SH + PY C CG F+ K + +H RSH +
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG--SVG 63
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHTNGITNKFHTG 284
+PY C C K F R H NG + H+G
Sbjct: 64 KPYICQSCGKGF--------SRPDHLNGHIKQVHSG 91
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH--LP 187
+G S C C K F HL H H+GE P+SC C F RK+ + H+R H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 188 GSEFNCIICTEPFNDKASLLEHLR 211
G + C C + F+ L H++
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIK 86
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 220 VCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTNGITN 279
C CGK FR +L H+ SH ++PY C +C F K + H RSH +
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSG----EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 280 KFHTGFPDKNFPKTE 294
+ K F + +
Sbjct: 65 PYICQSCGKGFSRPD 79
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 104 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
E P+ C + C + F++K +L H+R HTG+ P +C CM++F++ L HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 162 PHSCEFCDRTF----TRKEHLKRHLRQ 184
P +C+ C R F TR H K HLRQ
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 20 DSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+ P+ C + C + FS+K + H+ HTG+ P +C C + F++ L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 78 PHHCNYCAKSF----TRKDHMVYHERQ 100
P C+ C + F TR H H RQ
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 76 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E P+ C C + F++K ++ H R HTG+ PF C+ C + F++ L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 134 PHKCTYCMKSF----TRKEHLTNHIRQ 156
P C C + F TR H H+RQ
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 48 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
E P+ C + C + F++K +L H+R HTG+ P C C ++F++ + H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 106 PFPCQYCPKAF----TRKDHLVNHVRR 128
PF C C + F TR H H+R+
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 160 ESPHSC--EFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDC 217
E P++C E CDR F++K +L H+R H F C IC F+ L +H+R+H +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 218 PYVCTDCGKAF 228
P+ C CG+ F
Sbjct: 62 PFACDICGRKF 72
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 132 ESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGS 189
E P+ C C + F++K +L HIR HTG+ P C C R F++ L +H+R H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 190 EFNCIICTEPFNDKASLLEHLRSHPR 215
F C IC F + H + H R
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLR 87
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTF----TRKEHLVNHV 70
R H PF C IC + FS+ H+ HTGE P CD C + F TR H H+
Sbjct: 27 RIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHL 86
Query: 71 RQ 72
RQ
Sbjct: 87 RQ 88
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDL 255
C F+ K +L H+R H P+ C C + F L H R+H ++P+ CD+
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG----EKPFACDI 67
Query: 256 CPKDF 260
C + F
Sbjct: 68 CGRKF 72
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 218 PYVC--TDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
PY C C + F K NL H R H +P+ C +C ++F L H R+HT
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTG----QKPFQCRICMRNFSQHTGLNQHIRTHTG 59
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
PH+C+ C K F+RK+ L H+R HTG P+ C C + + H R H+ E PF C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 110 QYCPKAFTRKDHLVNHVRRHTGES 133
Q CP A L H+R HTG+S
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDS 91
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 44/84 (52%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
PH C C K F+RKD + H R HTG P+ C+ C A L H+R H+ E P KC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 138 TYCMKSFTRKEHLTNHIRQHTGES 161
C + LT H+R HTG+S
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDS 91
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 43/83 (51%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNC 193
PHKC C K F+RK+ L H+R HTG P+ C+ CD L +HLR H F C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 194 IICTEPFNDKASLLEHLRSHPRD 216
IC + + L HLRSH D
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%)
Query: 16 SHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTG 75
S + P C++CGK FSRKD K H+ HTG P++C C L H+R H+
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
E P C C + + H R HTG++
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDS 91
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 39/80 (48%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
P C+ C K F+RKD L H+R HTG P+KC C + L H+R H+ E P C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 166 EFCDRTFTRKEHLKRHLRQH 185
+ C L HLR H
Sbjct: 68 QICPYASRNSSQLTVHLRSH 87
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%)
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVC 221
PH CE C + F+RK+ LK H+R H + C C D +SL +HLR H + P+ C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 222 TDCGKAFRLKGNLMFHQRSH 241
C A R L H RSH
Sbjct: 68 QICPYASRNSSQLTVHLRSH 87
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 193 CIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYH 252
C +C + F+ K L H+R H PY C C A +L H R H +RP+
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD----ERPFK 66
Query: 253 CDLCPKDFIDKGHLVSHRRSHTN 275
C +CP + L H RSHT
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTG 89
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
P+ C CGK F K L H R H G+ +PY C C D L H R H++
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHT-GV---KPYKCKTCDYAAADSSSLNKHLRIHSD 61
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 59/134 (44%), Gaps = 23/134 (17%)
Query: 56 CAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKA 115
C +TF+ LV HV P N H+ Y E C K+
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNN----------HVCYWEE---------CPREGKS 71
Query: 116 FTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEF--CDRT 171
F K LVNH+R HTGE P C + C K F R E+L H R HTGE P CEF CDR
Sbjct: 72 FKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRR 131
Query: 172 FTRKEHLKRHLRQH 185
F K+H+ H
Sbjct: 132 FANSSDRKKHMHVH 145
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 53 CDYCAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQ 110
C K+F K LVNH+R HTGE P C + C K F R +++ H+R HTGE PF C+
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 111 Y--CPKAFTRKDHLVNHVRRHTGE 132
+ C + F H+ HT +
Sbjct: 125 FEGCDRRFANSSDRKKHMHVHTSD 148
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 108 PCQYCPKAFTRKDHLVNHV-RRHTG---ESPHKCTY--C---MKSFTRKEHLTNHIRQHT 158
P + C + F+ LV HV H G ++ H C + C KSF K L NHIR HT
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 159 GESPHSCEF--CDRTFTRKEHLKRHLRQHLPGSEFNCII--CTEPFNDKASLLEHLRSHP 214
GE P C F C + F R E+LK H R H F C C F + + +H+ H
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 215 RD 216
D
Sbjct: 147 SD 148
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 29 GKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNY--C 84
GK F K NH+ HTGE P C + C K F R E+L H R HTGE P C + C
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGC 128
Query: 85 AKSFT----RKDHMVYHERQHTG 103
+ F RK HM H +G
Sbjct: 129 DRRFANSSDRKKHMHVHTSDKSG 151
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 17/121 (14%)
Query: 168 CDRTFTRKEHLKRHL-RQHLPGSEFNCIIC--------TEPFNDKASLLEHLRSHPRDCP 218
CDRTF+ L H+ +H+ G E N +C + F K L+ H+R H + P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 219 YVCT--DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDL--CPKDFIDKGHLVSHRRSHT 274
+ C CGK F NL H+R+H ++P+ C+ C + F + H HT
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTG----EKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 275 N 275
+
Sbjct: 147 S 147
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 90/222 (40%), Gaps = 57/222 (25%)
Query: 103 GETPFPCQY---------CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLT 151
GE P Y C A+ + L H+ +HTGE P C C K FT HLT
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 152 NHIRQHTGESPHSCEF--CDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEH 209
H HTGE +C+ CD FT K ++K+H + F+ I
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR------FHNI--------------- 100
Query: 210 LRSHPRDCPYVC--TDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLV 267
+ C YVC +CGKAF+ L HQ SH + +P + P+ + C K F L
Sbjct: 101 -----KICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH--EGCDKRFSLPSRLK 153
Query: 268 SHRRSHTNGITNKFHTGFPDK-----NFPKTETSFMLKHLMK 304
H K H G+P K +F + LKH+ +
Sbjct: 154 RHE---------KVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 186
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 62/142 (43%), Gaps = 14/142 (9%)
Query: 56 CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQY-- 111
C + + L H+ +HTGE P C C K FT H+ H HTGE F C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 112 CPKAFTRKDHLVNHVRRHTGESPHKCTY------CMKSFTRKEHLTNHIRQHTGESPHSC 165
C FT K ++ H R + C Y C K+F + L H HT + P+ C
Sbjct: 80 CDLRFTTKANMKKHFNRF--HNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137
Query: 166 --EFCDRTFTRKEHLKRHLRQH 185
E CD+ F+ LKRH + H
Sbjct: 138 PHEGCDKRFSLPSRLKRHEKVH 159
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 13/159 (8%)
Query: 28 CGKYFSRKDHYKNHVMWHTGETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNY-- 83
CG +++ + H+ HTGE P C + C K FT HL H HTGE C+
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 84 CAKSFTRKDHMVYH-ERQHTGET-PFPCQY--CPKAFTRKDHLVNHVRRHTGESPHKCTY 139
C FT K +M H R H + + C + C KAF + + L H HT + P++C +
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 140 --CMKSFTRKEHLTNHIRQHTG---ESPHSCEFCDRTFT 173
C K F+ L H + H G + SC F +T+T
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 178
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 24 HCDICGKYFSRKDHYKNHVMWHTGETPHRC--DYCAKTFTRKEHLVNHVRQHTG---ESP 78
H + CGK F + + K H HT + P+ C + C K F+ L H + H G +
Sbjct: 108 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 167
Query: 79 HHCNYCAKSFT 89
C++ K++T
Sbjct: 168 DSCSFVGKTWT 178
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%)
Query: 81 CNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYC 140
C +C + FT+ +++ HER HT E P+ C C KAF R+DHL +H H+ E P KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 141 MKSFTRKEHLTNHIRQHTGES 161
K F + L H H S
Sbjct: 80 GKGFCQSRTLAVHKTLHMQTS 100
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 53 CDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYC 112
C +C + FT+ +L+ H R HT E P+ C+ C K+F R+DH+ H H+ E PF CQ C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 113 PKAFTRKDHLVNHVRRHTGES 133
K F + L H H S
Sbjct: 80 GKGFCQSRTLAVHKTLHMQTS 100
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
F C++C + FT+ +L+ H R HT E P+ C C K+F R++HL +H H+ E P C+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 167 FCDRTFTRKEHLKRHLRQHLPGS 189
C + F + L H H+ S
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTS 100
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%)
Query: 19 TDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
T F C CG++F++ + H HT E P+ CD C K F R++HL +H H+ E P
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 79 HHCNYCAKSFTRKDHMVYHERQH 101
C C K F + + H+ H
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLH 96
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHT 74
R+H + P+ CDIC K F R+DH ++H H+ E P +C C K F + L H H
Sbjct: 38 RTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Query: 75 GES 77
S
Sbjct: 98 QTS 100
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 137 CTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIIC 196
C +C + FT+ +L H R HT E P++C+ C + F R++HL+ H H F C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 197 TEPFNDKASLLEH 209
+ F +L H
Sbjct: 80 GKGFCQSRTLAVH 92
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 190 EFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDR 249
EF C C F +LL H R+H + PY C C KAFR + +L H+ H K ++
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK----EK 72
Query: 250 PYHCDLCPKDFIDKGHLVSHRRSH 273
P+ C C K F L H+ H
Sbjct: 73 PFKCQECGKGFCQSRTLAVHKTLH 96
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 165 CEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDC 224
C+FC R FT+ +L H R H + C IC + F + L +H H ++ P+ C +C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 225 GKAFRLKGNLMFHQRSHQK 243
GK F L H+ H +
Sbjct: 80 GKGFCQSRTLAVHKTLHMQ 98
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 219 YVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++C CG+ F NL+ H+R+H +RPY CD+C K F + HL HR H+
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTD----ERPYTCDICHKAFRRQDHLRDHRYIHSK 70
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
+G+ +PCQ C K+FT K H+ H G P+ C C K F K HL H++ HTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 162 PHSCEFCDRTFTRKEHLKRHL 182
P+ C C + F ++ RH+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%)
Query: 28 CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKS 87
CGK F+ K H+ H G P+ C C K F K HLV H++ HTG P+ CN CAK
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 88 FTRKD 92
F +D
Sbjct: 75 FMWRD 79
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 35/71 (49%)
Query: 56 CAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKA 115
C K+FT K H+ H G P+ C C K F K H+V H + HTG P+ C C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 116 FTRKDHLVNHV 126
F +D HV
Sbjct: 75 FMWRDSFHRHV 85
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%)
Query: 84 CAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKS 143
C KSFT K H H G P+ C C K F K HLV H++ HTG P++C C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 144 FTRKEHLTNHI 154
F ++ H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%)
Query: 140 CMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEP 199
C KSFT K H+ H G P+ C C + F K HL H++ H + C IC +
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 200 FNDKASLLEHLRS 212
F + S H+ S
Sbjct: 75 FMWRDSFHRHVTS 87
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 17 HITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHV 70
H+ P+ C +CGK F K H H+ HTG P+ C+ CAK F ++ HV
Sbjct: 32 HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 158 TGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDC 217
+G+ + C+ C ++FT K RH+ HL + C +C + F K L+ H++ H
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 218 PYVCTDCGKAFRLK 231
PY C C K F +
Sbjct: 65 PYECNICAKRFMWR 78
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDL 255
C + F K+ H+ H PY C CGK F++K +L+ H + H +PY C++
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG----IKPYECNI 70
Query: 256 CPKDFI 261
C K F+
Sbjct: 71 CAKRFM 76
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 223 DCGKAFRLKGNLMFHQRSHQKGMPMD-RPYHCDLCPKDFIDKGHLVSHRRSHTN 275
CGK+F K QR M + RPY C +C K F K HLV H + HT
Sbjct: 14 QCGKSFTHKS-----QRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG 62
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 56 CAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQY--CP 113
C K F + H+ H G H C C K+F + H+ HTGE PF C + C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 114 KAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHT 158
K F+ +L HVR HTG+ P+ C + C K F + +L +HI H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 28 CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNY--CA 85
C K F + H+ H G H C C K F L H HTGE P C + C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 86 KSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRHT 130
K F+ ++ H R HTG+ P+ C + C K F + +L +H+ H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 25 CDICGKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCN 82
C CGK F K H + HTGE P +C + C K F+ +L HVR HTG+ P+ C
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 83 Y--CAKSFTRKDHMVYHERQHT 102
+ C K F + ++ H H
Sbjct: 97 FDGCNKKFAQSTNLKSHILTHA 118
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 168 CDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCT--DCG 225
C + F +++HL H P C C + F + + L H H + P+ CT CG
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHV-CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 226 KAFRLKGNLMFHQRSHQKGMPMDRPYHC--DLCPKDFIDKGHLVSHRRSHTNGITNK 280
K F L NL H R H DRPY C D C K F +L SH +H N+
Sbjct: 72 KRFSLDFNLRTHVRIHTG----DRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNC 193
PHK C K F + H+ H G H C C + F LKRH H F C
Sbjct: 9 PHK--GCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 194 II--CTEPFNDKASLLEHLRSHPRDCPYVC--TDCGKAFRLKGNLMFHQRSHQKG 244
C + F+ +L H+R H D PYVC C K F NL H +H K
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 108 PCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEF 167
P + C K F + H+ H G H C C K+F L H HTGE P C F
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF 67
Query: 168 --CDRTFTRKEHLKRHLRQHLPGSEFNCII--CTEPFNDKASLLEHLRSHPR 215
C + F+ +L+ H+R H + C C + F +L H+ +H +
Sbjct: 68 EGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRH 181
P +C CM++F+R +HLT HIR HTGE P +C+ C R F R + KRH
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYH-ERQHTGETPFP 108
P +C C + F+R +HL H+R HTGE P C+ C + F R D H + QH P
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI--LPIL 60
Query: 109 CQYCPKAFTRKDHLVNHVRR 128
+ ++ HL N V R
Sbjct: 61 EDKVEELLSKNYHLENEVAR 80
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNH 69
PF C IC + FSR DH H+ HTGE P CD C + F R + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNH 153
PF C+ C + F+R DHL H+R HTGE P C C + F R + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHV-MWHTGETPHRCDYCAKTFTRKEHLVNHV 70
R+H + PF CDICG+ F+R D K H + H P D + ++ HL N V
Sbjct: 24 RTHTGEKPFACDICGRKFARSDERKRHRDIQHI--LPILEDKVEELLSKNYHLENEV 78
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPF 200
P C C R F+R +HL H+R H F C IC F
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 191 FNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAF 228
F C IC F+ L H+R+H + P+ C CG+ F
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHTN 275
+P+ C +C ++F HL +H R+HT
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHR 270
P+ C C + F +L H R+H ++P+ CD+C + F HR
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTG----EKPFACDICGRKFARSDERKRHR 51
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHT 130
E P+ C C K+F+R +V H+R HTGE P+ C C KAF++ L+NH R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 34/55 (61%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 158
E P+ C C KAF+R LV H R HTGE P+KC C K+F++ L NH R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHT 102
E P+ C C K F+R LV H R HTGE P+ C C K+F++ ++ H+R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHT 74
+ P+ C CGK FSR H HTGE P++C C K F++ L+NH R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPG 188
E P+ C C K+F+R L H R HTGE P+ C C + F++ L H R H G
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTNG 276
PY C +CGKAF L+ HQR H ++PY C C K F L++H+R HT+G
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTG----EKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 191 FNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKG 244
+ C+ C + F+ + L++H R H + PY C +CGKAF L+ HQR H G
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 160 ESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSH 213
E P+ C C + F+R L +H R H + C+ C + F+ + L+ H R H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHT 46
+R H + P+ C CGK FS+ NH HT
Sbjct: 34 QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 108 PCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 158
P + C + F+R D L H+R HTG+ P +C CM++F+R +HLT HIR HT
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 84 CAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHT 130
C + F+R D + H R HTG+ PF C+ C + F+R DHL H+R HT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 22 PFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHT 74
P+ C + C + FSR D H+ HTG+ P +C C + F+R +HL H+R HT
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 134 PHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
P+ C C + F+R + LT HIR HTG+ P C C R F+R +HL H+R H
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 50 PHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHT 102
P+ C + C + F+R + L H+R HTG+ P C C ++F+R DH+ H R HT
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 162 PHSC--EFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSH 213
P++C E CDR F+R + L RH+R H F C IC F+ L H+R+H
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHT 46
R H PF C IC + FSR DH H+ HT
Sbjct: 42 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 214 PRDCPYVC--TDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRR 271
P+ PY C C + F L H R H +P+ C +C ++F HL +H R
Sbjct: 15 PKMRPYACPVESCDRRFSRSDELTRHIRIHTG----QKPFQCRICMRNFSRSDHLTTHIR 70
Query: 272 SHT 274
+HT
Sbjct: 71 THT 73
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 32/56 (57%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
+ CD CGK FS H HTGE P++CD C K F ++ HL+ H R HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 51 HRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
++CD C K+F+ L H R HTGE P+ C+ C K+F ++ H++ H R HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 81 CNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
C+ C KSF+ + H R HTGE P+ C C KAF ++ HL+ H R HTG P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%)
Query: 98 ERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQH 157
E Q + C C K+F+ L H R HTGE P+KC C K+F ++ HL H R H
Sbjct: 10 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Query: 158 TGESPHS 164
TG P S
Sbjct: 70 TGSGPSS 76
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 219 YVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
Y C +CGK+F +L H+R+H ++PY CD C K FI + HL+ H R HT
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTH----TGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 135 HKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+KC C KSF+ L+ H R HTGE P+ C+ C + F ++ HL H R H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 191 FNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
+ C C + F+ + L +H R+H + PY C +CGKAF + +L+ H R H P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
RR+H + P+ CD CGK F ++ H H HTG P
Sbjct: 38 RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 163 HSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCP 218
+ C+ C ++F+ L +H R H + C C + F ++ L+ H R H P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHTN 275
R Y CD C K F L HRR+HT
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTG 43
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
D P+ CD C F K + +H HTGE P+RC+ C F R +L H R H+GE P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
+ P++CD C +F K +L +H HTGE P+ CN C F R ++ H R H+GE P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
+ P+ C C +F K +L +H HTGE P++C C F R +L H R H+GE P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
+ P+ C+ C SF K ++ H+ HTGE P+ C C F R +L H R H+GE P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ P+KC C SF K +L +H HTGE P+ C C F R +LK H R H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 216 DCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
D PY C C +FR KGNL H+ H ++PY C++C F +L +H R H+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTG----EKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 160 ESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCP 218
+ P+ C+ C +F K +L H H + C IC FN A+L H R H + P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 22/56 (39%)
Query: 191 FNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
+ C C F K +L H H + PY C CG F NL H R H P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 81 CNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRR-HTG 131
C C ++F R++H+ H R HT E P+PC C +AFTR+D L+ H ++ H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 137 CTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQ 184
C C ++F R+EHL H R HT E P+ C C+R FTR++ L RH ++
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 53 CDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYH-ERQHTG 103
C+ C + F R+EHL H R HT E P+ C C ++FTR+D ++ H ++ H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQ-HTG 159
F C+ C +AF R++HL H R HT E P+ C C ++FTR++ L H ++ H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQ-HTG 75
F C++C + F+R++H K H HT E P+ C C + FTR++ L+ H ++ H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 165 CEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEH 209
CE C R F R+EHLKRH R H + C +C F + L+ H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 191 FNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKG 244
F C +CT F + L H RSH + PY C C +AF + L+ H + G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 219 YVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSH 269
+VC C +AF + +L H RSH ++PY C LC + F + L+ H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN----EKPYPCGLCNRAFTRRDLLIRH 49
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 251 YHCDLCPKDFIDKGHLVSHRRSHTNGITNKFHTGFPDKNFPKTETSFMLKHLMKGESMML 310
+ C++C + F + HL H RSHTN + G ++ F T +++H K S L
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN--EKPYPCGLCNRAF--TRRDLLIRHAQKIHSGNL 58
Query: 311 S 311
Sbjct: 59 G 59
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVM-WHTG 47
RSH + P+ C +C + F+R+D H H+G
Sbjct: 23 RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 131 GESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
G S +C+YC K F +L H+R HTGE P+ CEFC+ +K L+ HL +H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 75 GESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRH 129
G S C+YC K F ++ H R HTGE P+ C++C A +K L H+ RH
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 47 GETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 101
G + C YC K F +L H+R HTGE P+ C +C + +K + YH +H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 103 GETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQH 157
G + C YC K F +L H+R HTGE P+KC +C + +K L H+ +H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 20 DSPFHCDICGKYFSRKDHYKN-HVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
S C CGK+F R ++Y N H+ HTGE P++C++C +K L H+ +H
Sbjct: 2 SSSRECSYCGKFF-RSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 159 GESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSH 213
G S C +C + F +L HLR H + C C K SL HL H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 212 SHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRR 271
S R+C Y CGK FR L H R+H ++PY C+ C K L H
Sbjct: 2 SSSRECSY----CGKFFRSNYYLNIHLRTH----TGEKPYKCEFCEYAAAQKTSLRYHLE 53
Query: 272 SH 273
H
Sbjct: 54 RH 55
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 193 CIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQK 243
C C + F L HLR+H + PY C C A K +L +H H K
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 75 GESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
G + C C +S+ + H H+ E +PC+YC K F ++ H HTGE
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 135 HKCTYCMKSFTRKEHLTNHIRQHTGESP 162
++C C KSF + +++HI+ + P
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 36 DHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMV 95
DHY+ V G + C C +++ L H H+ E + C YC K F ++
Sbjct: 11 DHYELIV---DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRT 67
Query: 96 YHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
HE HTGE + C C K+F + +H++ + P
Sbjct: 68 KHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 103 GETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
G + C C +++ L H H+ E + C YC K F E+ T H HTGE
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 163 HSCEFCDRTFTRKEHLKRHLR 183
+ C C ++F + + H++
Sbjct: 79 YQCLACGKSFINYQFMSSHIK 99
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ C +C + + + H H+ E + C YC K F E+ H HTGE + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 83 YCAKSFTRKDHMVYHERQHTGETP 106
C KSF M H + + P
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDP 106
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 131 GESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSE 190
G + C C +S+ L H H+ E + C +C++ F E+ +H H
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 191 FNCIICTEPFNDKASLLEHLRS-HPRD 216
+ C+ C + F + + H++S H +D
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHSQD 105
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 191 FNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRP 250
+ CI+C + SL H H + Y C C K F L H+ H +R
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTG----ERR 78
Query: 251 YHCDLCPKDFIDKGHLVSHRRS 272
Y C C K FI+ + SH +S
Sbjct: 79 YQCLACGKSFINYQFMSSHIKS 100
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 17 HITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGE 76
H + + C C K F ++ H + HTGE ++C C K+F + + +H++ +
Sbjct: 45 HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQ 104
Query: 77 SP 78
P
Sbjct: 105 DP 106
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%)
Query: 159 GESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCP 218
G + C C R++ L+RH H ++ C C + F +H H +
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 219 YVCTDCGKAF 228
Y C CGK+F
Sbjct: 79 YQCLACGKSF 88
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 112 CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEF-- 167
C A+ + L H+ +HTGE P C C K FT HLT H HTGE +C+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 168 CDRTFTRKEHLKRHLRQ 184
CD FT K ++K+H +
Sbjct: 71 CDLRFTTKANMKKHFNR 87
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 56 CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQY-- 111
C + + L H+ +HTGE P C C K FT H+ H HTGE F C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 112 CPKAFTRKDHLVNHVRR 128
C FT K ++ H R
Sbjct: 71 CDLRFTTKANMKKHFNR 87
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 140 CMKSFTRKEHLTNHIRQHTGESPHSC--EFCDRTFTRKEHLKRHLRQHLPGSEFNCII-- 195
C ++ + L H+ +HTGE P C E C++ FT HL RH H F C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 196 CTEPFNDKASLLEHL 210
C F KA++ +H
Sbjct: 71 CDLRFTTKANMKKHF 85
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 28 CGKYFSRKDHYKNHVMWHTGETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNY-- 83
CG +++ + H+ HTGE P C + C K FT HL H HTGE C+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 84 CAKSFTRKDHMVYH 97
C FT K +M H
Sbjct: 71 CDLRFTTKANMKKH 84
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 219 YVCT--DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
Y+C+ DCG A+ L H H P P + C K F HL H +HT
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPF--PCKEEGCEKGFTSLHHLTRHSLTHT 59
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
+GE P+ C C KAF RKD L++H R H GES
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
+GE+P+ C+ C K+F RKD ++ H+R H GE+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+GE P+ C C K F RK+ L++H R H GES
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
+GE+P++C+ C K+F RK+ L +H R H GES
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C++CGKAF K L+ HQR+H
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTH 33
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGET 49
++P+ C CGK F+RKD +H H GE+
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 244 GMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
G + PY C C K F K L+SH+R+H
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 158 TGESPHSCEFCDRTFTRKEHLKRHLRQHL 186
+GE+P+ C C + F RK+ L H R H
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHA 34
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 140 CMKSFTRKEHLTNHIRQHTGESPHSCEF--CDRTFTRKEHLKRHLRQH 185
C K++ + HL H R HTGE P SC + C+R F R + L RH R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 84 CAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRH 129
C K++ + H+ H R HTGE PF C + C + F R D L H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 56 CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQH 101
C KT+ + HL H R HTGE P C++ C + F R D + H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 8 PTIHAER-RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKE 64
P I + R RSHI P CGK + + H K H HTGE P C + C + F R +
Sbjct: 8 PQIDSSRIRSHICSHPG----CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 65 HLVNHVRQH 73
L H R H
Sbjct: 64 ELSRHRRTH 72
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 112 CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQH 157
C K + + HL H R HTGE P C++ C + F R + L+ H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 197 TEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDL- 255
+ P D + + H+ SHP CGK + +L H R+H ++P+ C
Sbjct: 6 SGPQIDSSRIRSHICSHP--------GCGKTYFKSSHLKAHTRTHTG----EKPFSCSWK 53
Query: 256 -CPKDFIDKGHLVSHRRSH 273
C + F L HRR+H
Sbjct: 54 GCERRFARSDELSRHRRTH 72
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+RCD C K F++K L+ H+R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C KAF++K L+ H+R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHS 164
E P++C C K+F++K L HIR HTG P S
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C+ C K+F++K ++ H R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY CD C K F KG L+ H R HT
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ CD CGK FS+K H+ HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C CGKAF KG+L+ H R H P
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY CTDCGKAF LK L+ HQR+H
Sbjct: 10 PYECTDCGKAFGLKSQLIIHQRTH 33
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
+GE P+ C C K+F K ++ H+R HTGE+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
+GE P+ C C KAF K L+ H R HTGES
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+GE P+ C C K F K L+ H R HTGES
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
+GE P++CT C K+F K L H R HTGES
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 244 GMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
G ++PY C C K F K L+ H+R+HT
Sbjct: 4 GSSGEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC C K FT+ HLTNH R HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C+ C K FT+ HL NH R HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C K FT+ HL NH R HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ CN C K FT+ H+ H R HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C+ CGK F++ H NH HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHT 274
++PY C+ C K F HL +H R HT
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHT 36
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 160 ESPHSCEFCDRTFTRKEHLKRHLRQH 185
E P+ C C + FT+ HL H R H
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIH 35
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E PH CN C KSF + H++ H+R HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E PH+C+ C K+F + HL+ H R HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 19/31 (61%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E PHKC C KSF + HL H R HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P C C K+F + HL+ H R HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
+RP+ C+ C K FI HL+ H+R HT
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTG 37
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P C+ CGK F + H H HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
P+ C +CGK+F +L+ HQR H P
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
+GE P+ C C KAF RK H + H R HTGES
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
+GE P+ C C K+F RK H + HER HTGE+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+GE P+ C C K F RK H + H R HTGES
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
+GE P+ CT C K+F RK H H R HTGES
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 244 GMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
G ++PY C C K FI K H ++H R HT
Sbjct: 4 GSSGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PYVCT+CGKAF K + + H+R H
Sbjct: 10 PYVCTECGKAFIRKSHFITHERIH 33
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGET 49
+ P+ C CGK F RK H+ H HTGE+
Sbjct: 8 EKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 158 TGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE P+ C C + F RK H H R H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIH 33
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C+ C KAFT+K HL H + HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C C+K+FT+K H+ H++ HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ C C+K FT+K HL H + HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P++C C K+FT+K HL H + HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY C +C K F K HL H+++HT
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C +C K F++K H H HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 160 ESPHSCEFCDRTFTRKEHLKRHLRQH 185
E P+ C+ C + FT+K HL +H + H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C C KAF K +L HQ++H P
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
+GE P+ CN C K F+ K +++ H+R HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGE 76
+GE P+ C+ C K F+ K +L+ H R HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGE 132
+GE P+ C C K F+ K +L+ H R HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 244 GMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
G ++PY C+ C KDF K +L+ H+R HT
Sbjct: 4 GSSGEKPYGCNECGKDFSSKSYLIVHQRIHTG 35
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGE 160
+GE P+ C C K F+ K +L H R HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C +CGK F K L+ HQR H
Sbjct: 10 PYGCNECGKDFSSKSYLIVHQRIH 33
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGE 48
+ P+ C+ CGK FS K + H HTGE
Sbjct: 8 EKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 158 TGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE P+ C C + F+ K +L H R H
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIH 33
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 127 RRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTG----ESPHSCEFCDRTFTRKEHLKRHL 182
R HTGE P+ C++C K+F +K+ L H +++ + C C +TFTR+ + RH
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 155 RQHTGESPHSCEFCDRTFTRKEHLKRHL-RQHLPG---SEFNCIICTEPFNDKASLLEHL 210
R HTGE P++C CD+TF +K+ L H R H P + F C C + F + ++ H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTG----ESPHHCNYCAKSFTRKDHMVYHERQ 100
HTGE P+ C +C KTF +K+ L H +++ + C+ C K+FTR++ M H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Query: 101 HTG 103
G
Sbjct: 70 CAG 72
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 99 RQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTG----ESPHKCTYCMKSFTRKEHLTNHI 154
R HTGE P+ C +C K F +K L H +R+ + C+ C K+FTR+ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 155 RQHTG 159
G
Sbjct: 68 DNCAG 72
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 71 RQHTGESPHHCNYCAKSFTRKDHMVYH-ERQHTGE---TPFPCQYCPKAFTRKDHLVNHV 126
R HTGE P+ C++C K+F +K + H +R H F C C K FTR++ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 127 RRHTG 131
G
Sbjct: 68 DNCAG 72
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 15 RSHITDSPFHCDICGKYFSRKD----HYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHV 70
R+H + P+ C C K F +K H+K + + C C KTFTR+ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 71 RQHTG 75
G
Sbjct: 68 DNCAG 72
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 211 RSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSH 269
R+H + PY C+ C K FR K L H + + + + C C K F + + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
+GE P+ C C KSF+++ + HER HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
+GE P++C C K+F+++ L H R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
+GE P+ C+ C K+F+++ L H R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHS 164
+GE P++C C KSF+++ L H R HTG P S
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C +CGK+F +G+L H+R H P
Sbjct: 10 PYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 244 GMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
G ++PY C C K F +G L H R HT
Sbjct: 4 GSSGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C CGK FS++ H HTG P
Sbjct: 8 EKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRR-HTGESPHKC 137
P+ CQ C K F+R DHL H+++ HT E PHKC
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQ-HTGESPHSCEF 167
P+ C C K F+R +HL HI+Q HT E PH C+
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 19 TDSPFHCDICGKYFSRKDHYKNHV-MWHTGETPHRCD 54
P+ C CGK FSR DH H+ HT E PH+C
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQ-HTGESPHHCN 82
P+ C C K F+R +HL H++Q HT E PH C
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQ-HTGETPFPCQ 110
P+ C C K F+R DH+ H +Q HT E P CQ
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQ 184
P+ C+ C + F+R +HL H++Q
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQ 34
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY+C +CGKAF ++ NL+ HQ+ H K P
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C KAFT + +L+ H + HT + P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C C K+FT + +++ H++ HT + P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ C C K FT + +L+ H + HT + P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+ C C K+FT + +L H + HT + P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
E P C +C K++ L+ H R H G P SC C + F + + RHL+ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQH 157
E PF C +C K + L H R H G P C C K F + + H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 160 ESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSH 213
E P C FC +T+ L RH R HL +C C + F D++ + HL+ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRH 129
E P CN+C K++ + H R H G P C C K F + + H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 19 TDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
++ PF C+ CGK + H H G P C C K F + + H++ H
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 101
E P C++C KT+ L H R H G P C C K F + + H + H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 191 FNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQ 242
F C C + + D + L H R+H P C +CGK FR + + H + HQ
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
P+ C CGK +R L H+R+H RP C C K F D+ + H + H N
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRAHLG----YRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSH 273
+RP+ C+ C K + D L HRR+H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAH 27
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ CDYC K F LV H R HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C+YC K+F +V H+R HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C YC KAF LV H R HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+ C YC K+F L H R HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PYVC CGKAF L L+ HQR H P
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY CD C K F LV H+R HT
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ CD CGK F H HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
+GE H CN C K+F+ K ++ H+R HTGE+
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+GE H C+ C K F+ K L+ H R HTGES
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
+GE C C KAF+ K L+ H R HTGES
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
+GE H+C C K+F+ K L H R HTGES
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 221 CTDCGKAFRLKGNLMFHQRSH 241
C +CGKAF K L+ HQR H
Sbjct: 13 CNNCGKAFSFKSQLIIHQRIH 33
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C+ C K FT+ HL NH R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC C K FT+ HL NH R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C K FT+ HL NH R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ CN C K FT+ H+ H+R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C+ CGK F++ H NH HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHT 274
++PY C+ C K F HL +H+R HT
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHT 36
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C +CGK F +L HQR H P
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 160 ESPHSCEFCDRTFTRKEHLKRHLRQH 185
E P+ C C + FT+ HL H R H
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIH 35
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E PF C+ C KAF + HL +H+R HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P KC C K+F + HL +H+R HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P +C C K F + HL +H+R HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ PF C CGK F + H +H+ HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P C C K+F + H+ H R HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C+ C KAF++ HL+ H R HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C C K+F++ H++ H+R HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ C C K F++ HL+ H R HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P++C C K+F++ HL H R HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C CGK FS+ H H HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY C C K F HL+ H+R HT
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTG 37
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C +CGKAF +L+ HQR H P
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ CN C KSF +K H+ H R HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ C+ C K+F +K HL H R HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+ C C KSF +K HL H R HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C K+F +K HL H R HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY C+ C K FI K HL HRR HT
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTG 37
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C+ CGK F +K H H HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY+C +CGK+F K +L H+R H P
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 160 ESPHSCEFCDRTFTRKEHLKRHLRQH 185
E P+ C C ++F +K HL RH R H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIH 35
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
+GE P+ CN C K+FT K ++ H+ HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
+GE P+ C C KAFT K L+ H HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
+GE P+ C+ C K FT K L+ H HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
+GE P+ C C K+FT K L H HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C +CGKAF K L+ H+ H
Sbjct: 10 PYSCNECGKAFTFKSQLIVHKGVH 33
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 244 GMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
G ++PY C+ C K F K L+ H+ HT
Sbjct: 4 GSSGEKPYSCNECGKAFTFKSQLIVHKGVHTG 35
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 158 TGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE P+SC C + FT K L H H
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVH 33
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
+G+ P+ CN C K+F K ++ HER HTGE+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PYVC +CGKAF LK L+ H+R H
Sbjct: 10 PYVCNECGKAFGLKSQLIIHERIH 33
Score = 35.4 bits (80), Expect = 0.046, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
+G+ P+ C C KAF K L+ H R HTGES
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
Score = 35.0 bits (79), Expect = 0.067, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+G+ P+ C+ C K F K L+ H R HTGES
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
+G+ P+ C C K+F K L H R HTGES
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+RC C K F +K +L H R HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P++C C K+F +K +LT H R HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C C K+F +K ++ H+R HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C KAF +K +L H R HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C +CGKAF K NL HQR H
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIH 35
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C CGK F++K + H HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY C C K F K +L H+R HT
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTG 37
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
+G P+ C C KAF K +L+ H+R HTGE P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
+G P+ C C K F K +L+ H+R HTGE P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
+G P+ C+ C K+F K +++ H R HTGE P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C++CGKAFR K L+ H R+H
Sbjct: 10 PYGCSECGKAFRSKSYLIIHMRTH 33
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
+G P+ C+ C K+F K +L H+R HTGE P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHTN 275
+PY C C K F K +L+ H R+HT
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTG 35
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGETP 50
P+ C CGK F K + H+ HTGE P
Sbjct: 10 PYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C KAF+ K +L+ H+R H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ C C K F+ K +L+ H+R H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C+ C K+F+ K +++ H R H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+ C+ C K+F+ K +L H+R H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C++CGKAF K L+ H R+H P
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C CGK FS K + H+ H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY C C K F K +L+ H R+H+
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSG 37
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 160 ESPHSCEFCDRTFTRKEHLKRHLRQH 185
E P+ C C + F+ K +L H+R H
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
P+ CT CGK+FR KGNL+ HQR H
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIH 35
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETPFP 108
+ P C +C KSF K ++V H+R HTGE P
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGP 42
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGE 132
+ PF C +C K+F K +LV H R HTGE
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGE 160
+ P +CT+C KSF K +L H R HTGE
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGE 76
+ P C +C K+F K +LV H R HTGE
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
+P+ C C K F KG+LV+H+R HT
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGE 48
PF C CGK F K + H HTGE
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGE 38
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E PH C C KSF+ ++ H+R HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E PH C C K+F+ L+ H R HTGE+P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E PH+C C KSF+ L H R HTGE+P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P C+ C K+F+ L+ H R HTGE+P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
P+ C +CGK+F L+ HQR H P
Sbjct: 12 PHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E PF C C KAF K +L+ H R HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P C+ C K+F K +++ H+R HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
P+ C++C KAF K NL+ HQR+H P
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P C C K F K +L+ H R HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P +C+ C K+F K +L H R HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++P+ C C K F K +L+ H+R+HT
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTG 37
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ PF C C K F+ K + H HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C KAF+RK L++H R H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E+P+ C+ C K+F+RK ++ H+R H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ C C K F+RK L++H R H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E+P++C C K+F+RK L +H R H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C +CGKAF K L+ HQR+H P
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
++P+ C CGK FSRK +H H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
+ PY C C K F K L+SH+R+H
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAG 37
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C+ C K FT+ HLV H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ CN C K FT+ H+V H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C K FT+ HLV H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC C K FT+ HL H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C+ CGK F++ H H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY C+ C K F HLV HR HT
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTG 37
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ CN C K+F++K + H+R HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ C+ C KTF++K L H R HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+ C C K+F++K L+ H R HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C K F++K L H R HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C+ CGK FS+K H HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C +CGK F K L HQR+H P
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY C+ C K F K L +H+R+HT
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTG 37
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
+GE P+ CQ C KAFT+ L H R HTGES
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
+GE P+ C C K+FT+ + H R HTGE+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+GE P+ C C K FT+ L H R HTGES
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
+GE P+ C C K+FT+ L+ H R HTGES
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PYVC +CGKAF L H+R H
Sbjct: 10 PYVCQECGKAFTQSSCLSIHRRVH 33
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 244 GMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
G ++PY C C K F L HRR HT
Sbjct: 4 GSSGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PYVC +CGKAFR K L+ H R+H
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTH 35
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGES 133
P+ C C KAF K +L+ H R HTGES
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGET 105
P+ CN C K+F K +++ H R HTGE+
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGES 77
P+ C+ C K F K +L+ H R HTGES
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGES 161
P+ C C K+F K +L H R HTGES
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHTN 275
+PY C+ C K F K +L+ H R+HT
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGET 49
P+ C+ CGK F K + H HTGE+
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C+ C KSFT+K + H++ HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P++C+ C KSFT+K L H + HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C ICGK F++K H HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ C C K+FT+K L H + HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C K+FT+K L H + HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY C +C K F K L H++ HT
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTG 37
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C+ CGK+F K L HQ+ H P
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 127 RRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHS--CEFCDRTFTRKEHLKRHLRQ 184
R H+GE P++C C FT+ + HI Q E+ C CD RK L HLR+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 71 RQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGE--TPFPCQYCPKAFTRKDHLVNHVRR 128
R H+GE P+ C C FT+ M H Q E F C +C RK L H+R+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 99 RQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHK--CTYCMKSFTRKEHLTNHIR- 155
R H+GE P+ C C FT+ + H+ + E+ K C +C RK L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 156 QHTGESPHS 164
QH+ P S
Sbjct: 68 QHSYSGPSS 76
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 155 RQHTGESPHSCEFCDRTFTRKEHLKRH-LRQHLPG-SEFNCIICTEPFNDKASLLEHLR 211
R H+GE P+ C C FT+ +K H L++H ++F+C C K+ L HLR
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHR--CDYCAKTFTRKEHLVNHVR- 71
R+H + P+ C IC F++ K H++ E + C +C RK L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 72 QHTGESP 78
QH+ P
Sbjct: 68 QHSYSGP 74
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGE--SPHHCNYCAKSFTRKDHMVYHER-QH 101
H+GE P+ C C FT+ + H+ Q E + HC +C RK + H R QH
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Query: 102 TGETP 106
+ P
Sbjct: 70 SYSGP 74
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C +C KAF K NLM HQR+H
Sbjct: 12 PYECNECQKAFNTKSNLMVHQRTH 35
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
E P+ CN C K+F K +++ H+R HTGE+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E P+ C C KAF K +L+ H R HTGES
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
E P+ C+ C K F K +L+ H R HTGES
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
E P++C C K+F K +L H R HTGES
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHT 274
++PY C+ C K F K +L+ H+R+HT
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHT 36
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P KC C KS+ ++ HLT H R HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E PF C C K++ ++ HL H R HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P +C C K++ ++ HL H R HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P C C KS+ ++ H+ H+R HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ PF C CGK ++++ H H HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E P+ C C K F+RKD LV+H + H+G+S
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
E+P+ C C K F+RKD +V H++ H+G++
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
E P+ C C K F+RK+ LV+H + H+G+S
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
E+P++C C K F+RK+ L +H + H+G+S
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGET 49
++P+ C CGK FSRKD +H H+G++
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C +CGK F K L+ HQ++H
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTH 35
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
+ PY C C K F K LVSH+++H+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSG 37
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGE 132
PF C+ C + F+R DHL H R HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGE 48
PF C C + FSR DH K H HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGE 104
P C C + F+R DH+ H R HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGE 160
P +C C + F+R +HL H R HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGE 76
P +C C + F+R +HL H R HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQH 185
P C+ C R F+R +HLK H R H
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTH 25
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGETP 106
P+ C+ CAK+F+ K ++ H+R HTG P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
P+ C CAKTF+ K L+ H R HTG P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C+ C K F LK L+ HQRSH
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
P+ C C K F+ K L+ H R HTG P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHTN 275
+PY C C K F K L+ H+RSHT
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTG 37
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
P+ C+ C K+F+ K L H R HTG P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.0 bits (84), Expect = 0.015, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PYVC+DCGKAF K L+ HQ H
Sbjct: 10 PYVCSDCGKAFTFKSQLIVHQGIH 33
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTG 103
+GE P+ C+ C K+FT K ++ H+ HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
+GE P+ C C KAFT K L+ H HTG S
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 32.0 bits (71), Expect = 0.57, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+GE P+ C C K FT K L+ H HTG S
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
+GE P+ C+ C K+FT K L H HTG S
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C+ C K FT+ HL H R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ CN C K FT+ H+ H R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC C K FT+ HL H R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C K FT+ HL H R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTNG 276
++PY C+ C K F HL HRR HT G
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGG 38
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 160 ESPHSCEFCDRTFTRKEHLKRHLRQHLPG 188
E P+ C C + FT+ HL RH R H G
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGG 38
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C+ CGK F++ H H HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C +CGK F +L H+R H G P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGE 76
P +C C K FT+ L+ HVRQHTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGE 132
P C C KAFT+ L+ HVR+HTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGE 160
P +C C K+FT+ L H+RQHTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGE 104
P C C K+FT+ ++ H RQHTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGE 48
P C +CGK F++ HV HTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ CN C K+F++ + H+R HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C+ C K F++ L H R HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C KAF++ L H R HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC C K+F++ L H R HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C+ CGK FS+ H HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C +CGKAF L HQR H P
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY C+ C K F L H+R HT
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTG 37
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E PF C+ C K FT+ HL +H R HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P +C+ C K FT+ HL +H R HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ PF C+ CGK F++ H +H HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P C C K FT+ H+ H+R HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P +C C K FT+ HL +H R HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++P+ C+ C K F HL SH+R HT
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTG 37
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
E P+ C+ C K+F R ++ H+R H+GE+
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E P+ C C KAF R L+ H R H+GES
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 212 SHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S R+ PY C++CGKAF L+ HQR+H
Sbjct: 6 SGTREKPYECSECGKAFIRNSQLIVHQRTH 35
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
E P+ C C K F R L+ H R H+GES
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
E P++C+ C K+F R L H R H+GES
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY C C K FI L+ H+R+H+
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSG 37
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 79 HHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRR 128
H C C +SF K H R FPC+YCP F L H+ +
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 135 HKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQ 184
H C C +SF K H+R C++C TF L RH+ +
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 25 CDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQ 72
C +CG+ F+ K + H+ C YC TF L H+ +
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 163 HSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHL-RSHPRD 216
H C C +F K +RHLR F C C F L H+ + HP +
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE 83
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C+ C K FT+ HL H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ CN C K FT+ H+ H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC C K FT+ HL H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C K FT+ HL H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C+ CGK F++ H H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY C+ C K F HL HR HT
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTG 37
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C+ C KSF +K + H+R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P++C+ C KSF +K L H R HTGE+P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ C C K+F +K L H R HTGE+P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C K+F +K L H R HTGE+P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C+DCGK+F K L HQR H
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIH 35
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C CGK F +K H HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY C C K FI K L H+R HT
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTG 37
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ PF CDICGK F + H M HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P +CD C K+F + L H HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P KC C KSF + L H HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E PF C C K+F + L H HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P C+ C KSF + + H HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C C K+FT + +++ H++ HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C KAFT + +L+ H + HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY+CT CGKAF + NL+ HQ+ H P
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ C C K FT + +L+ H + HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+ CT C K+FT + +L H + HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
+RPY C +C K F D+ +L+ H++ HT
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C +CGK F+ + + H HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
+GE P+ C C F RKD M YH R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGE 132
+GE P+ C C F RKD + HVR H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGE 76
+GE P+ C C F RK+ + HVR H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGE 160
+GE P+ C C F RK+ ++ H+R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 158 TGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE P+SC C F RK+ + H+R H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGET 49
+ P+ C +CG F RKD HV H G
Sbjct: 8 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+RC C K FT + +L H + HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C C K+FT + ++ H++ HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C KAFT + +L H + HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P++C C K+FT + +L H + HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C +CGKAF + NL HQ+ H P
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY C C K F D+ +L +H++ HT
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C CGK F+ + + H HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C +CGKAF+ K +L+ H+RSH P
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
RPY C C K F K L+ HRRSHT
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTG 37
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGETP 106
P+ C C K+F K ++ H R HTGE P
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
+ P+ C C KAF K L+ H R HTGE P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
+ P+ C C K F K L+ H R HTGE P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
P++C C K+F K L H R HTGE P
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGETP 106
P+ CN C K+F++ + H+R HTGE P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
P++C+ C K F++ L H R HTGE P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
P+ C C KAF++ L H R HTGE P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
P++C C K+F++ L H R HTGE P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGETP 50
P+ C+ CGK FS+ H HTGE P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C +CGKAF L HQR H P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHTN 275
+PY C+ C K F L H+R HT
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTG 37
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 16 SHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
S + PF CD C K F ++ +H M HTGE P
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
T E P RCD C K+F ++ L +H HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
T E PF C C K+F ++ L +H HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
T E P +C C KSF ++ L +H HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
T E P C+ C KSF ++ + H HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 247 MDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++P+ CD C K F + L SHR HT
Sbjct: 9 AEKPFRCDTCDKSFRQRSALNSHRMIHTG 37
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C +CGKAFR + +L HQ +H P
Sbjct: 12 PYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ CN C K+F + + H+ H+GE P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C+ C K F + L H H+GE P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC C K+F + L H H+GE P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C KAF + L H H+GE P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C+ CGK F + H H+GE P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ CD+CGK FS+ H + H HTGE P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E ++CD C K F++ HL H R HTGE P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E +KC C K F++ HL H R HTGE P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E + C+ C K F++ H+ H+R HTGE P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E + C C K F++ HL H R HTGE P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++ Y CD+C K+F HL +H+R HT
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTG 37
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 158 TGESPHSCEF--CDRTFTRKEHLKRHLR-QHLPGSEFNCI--ICTEPFNDKASLLEHLRS 212
+G S C+F C R F+ +++L H + QH+ F+C C + FN K L EH++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 213 HPRDCPYVCTDCG 225
H Y+C G
Sbjct: 63 HSDTRDYICEFSG 75
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 102 TGETPFPCQY--CPKAFTRKDHLVNHVR-RHTGESPHKCT--YCMKSFTRKEHLTNHIRQ 156
+G + PC + C + F+ + +L +H + +H + C C KSF K+HL H++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 157 HTGESPHSCEF 167
H+ + CEF
Sbjct: 63 HSDTRDYICEF 73
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 130 TGESPHKCTY--CMKSFTRKEHLTNHIR-QHTGESPHSCE--FCDRTFTRKEHLKRHLRQ 184
+G S C + C + F+ +++L +H + QH + SC C ++F K+HLK H++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 185 HLPGSEFNC 193
H ++ C
Sbjct: 63 HSDTRDYIC 71
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 74 TGESPHHCNY--CAKSFTRKDHMVYHER-QHTGETPFPCQ--YCPKAFTRKDHLVNHVRR 128
+G S C++ C + F+ + ++ +H++ QH + F C C K+F K HL H++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 129 HTGESPHKCTY 139
H+ + C +
Sbjct: 63 HSDTRDYICEF 73
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 25 CDI--CGKYFSRKDHYKNHVMW-HTGETPHRCD--YCAKTFTRKEHLVNHVRQHTGESPH 79
CD CG+ FS + + +H + H + C C K+F K+HL H++ H+ +
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 80 HCNYCAKS 87
C + S
Sbjct: 70 ICEFSGPS 77
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C+DCGKAF K L HQ+SH
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGE 160
E P+KC+ C K+FTRK L H + HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
E P+ C+ C K+FTRK + H++ HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGE 132
E P+ C C KAFTRK L H + HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGE 76
E P++C C K FTRK L H + HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGE 48
+ P+ C CGK F+RK H HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E PF C C K FT K +L+ H + HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E+P C+ C K FT K +++ H++ HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
P++C++CGK F K NL+ HQ+ H P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P C C K FT K +L+ H + HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E+P C+ C K FT K +L H + HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
++PF C CGK F+ K + H HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQ 156
+ C+ C + L H+R HT P+ CTYC SF K +LT H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 219 YVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRS 272
Y+C +CG + L H R+H RPYHC C F KG+L H +S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTD----VRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 53 CDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQ 100
C+ C + L H+R HT P+HC YC SF K ++ H +
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 190 EFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRS 240
++ C C + L +H+R+H PY CT C +F+ KGNL H +S
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 165 CEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRS 212
CE C + LK+H+R H ++C C F K +L +H++S
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 150 LTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQ 184
L HIR HT P+ C +C+ +F K +L +H++
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQ 72
+ C+ CG + K H+ HT P+ C YC +F K +L H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 81 CNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVR 127
C C + + H R HT P+ C YC +F K +L H++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHT---GETPFPCQYCPKAFTRKDHLVNH 125
+G S C C + +K + +H+R+H FPC++C K F + D + H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 221 CTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHR 270
C CG R K +L +HQR H + + R + C+ C K F + +HR
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHR 58
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 79 HHCNYCAKSFTRKDHMVYHERQHTGETP 106
+ C+ C K+F RK ++ H+R HTGE P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRHTGESP 134
+ C C KAF RK L+ H R HTGE P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 51 HRCDYCAKTFTRKEHLVNHVRQHTGESP 78
+ C C K F RK L+ H R HTGE P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 219 YVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
Y C++CGKAF K L+ HQR H P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 135 HKCTYCMKSFTRKEHLTNHIRQHTGESP 162
++C+ C K+F RK L H R HTGE P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ C CGK F+RK H HTGE P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
+GE H C+ C K+F+ +V H+R HTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
+GE H C C KTF+ LV H R HTGE+P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
+GE H+C+ C K+F+ L H R HTGE+P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
+GE C C K F+ LV H R HTGE+P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ CQ C KAF HLV H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C C K F HLV H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C C K+F H+V H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC C K+F HL H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C +CGK F H H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C CGKAFR+ +L+ H H P
Sbjct: 12 PYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY C +C K F HLV H H+
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSG 37
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY+C CGK+F +G+L HQRS + P
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E+P+ C C KSFT++ + H+R + P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
ETP+ C C K+FT++ L H R + P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRS 272
+ PY C C K F +G L H+RS
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRS 33
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
ETP+ C C K+FT++ L H R + P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHS 164
E+P+ C C KSFT++ L H R + P S
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
P++C+ C K FT+ HL H HTGE P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGETP 106
P+ CN C K FT+ H+ H HTGE P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
P+KC C K FT+ HL H HTGE P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
P+ C C K FT+ HL H HTGE P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGETP 50
P+ C+ CGK F++ H H HTGE P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHTN 275
+PY C+ C K F HL HR HT
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTG 37
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGE 132
E PF C C K F R+ HL H+R H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGE 76
E P +C+ C K F R+ HL H+R H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGE 160
E P KC C K F R+ HL H+R H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGE 48
+ PF C+ CGK F R+ H H+ H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
E P CN C K F R+ H+ H R H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHT 274
+RP+ C+ C K F + HL H R H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 160 ESPHSCEFCDRTFTRKEHLKRHLRQH 185
E P C C + F R+ HL HLR H
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLH 35
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
+GE PF C C KAF+ K +L+ H + H E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
+GE P C+ C K+F+ K +++ H++ H E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
+GE P C C K F+ K +L+ H + H E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
+GE P C+ C K+F+ K +L H + H E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 244 GMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
G ++P+ C C K F K +L+ H+++H
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAE 35
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
P+ C+ C KAF K L+ HQ++H + P
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E PF C+ C K FT+ L +H R HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P +C+ C K FT+ L +H R HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P KC C K FT+ L +H R HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ PF C+ CGK F++ +H HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P C C K FT+ + H+R HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++P+ C+ C K F L SH+R HT
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTG 37
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E PF C C K+F+ L H R HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P C C KSF+ + H+R HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P +C C KSF+ L H R HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P C C K+F+ L H R HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ PF C CGK FS H HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
P+ C +CGK+F + L HQR H P
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
+G+ + C C KSF +K + HER HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 219 YVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
Y C +CGK+FR KG+L H+R H P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
+G+ + CQ C K+F +K L H R HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHS 164
+G+ ++C C KSF +K LT H R HTG P S
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
+G+ + C C K+F +K L H R HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 14/32 (43%)
Query: 244 GMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
G R Y C C K F KG L H R HT
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTG 35
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C C K F R HL H HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C CGK F R H H + HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C+ C K F R H+ H+ HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C K F R HL H HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC C K F R HL H HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 99 RQHTGETPFPCQYCPKAFTRKDHLVNHVRRH 129
R TG PF C C ++F+R DHL H +RH
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 155 RQHTGESPHSCEFCDRTFTRKEHLKRHLRQHL 186
R TG P C CDR+F+R +HL H ++H+
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 70 VRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 101
R TG P C C +SF+R DH+ H ++H
Sbjct: 3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 126 VRRHTGESPHKCTYCMKSFTRKEHLTNHIRQH 157
R TG P +C C +SF+R +HL H ++H
Sbjct: 3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQH 73
TG P +C C ++F+R +HL H ++H
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRHTGESP 134
F C C KAFTRK L H + HTGE P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 136 KCTYCMKSFTRKEHLTNHIRQHTGESP 162
+CT C K+FTRK L+ H + HTGE P
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 81 CNYCAKSFTRKDHMVYHERQHTGETP 106
C C K+FTRK + H++ HTGE P
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 52 RCDYCAKTFTRKEHLVNHVRQHTGESP 78
C C K FTRK L H + HTGE P
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWHTGETP 50
F C CGK F+RK H HTGE P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 219 YVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
+ CT+CGKAF K L HQ+ H P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 212 SHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S ++ PY C +CGKAFR + NL HQ H
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIH 35
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGE 160
T E P+KC C K+F + +LT H HTGE
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGE 132
T E P+ C C KAF + +L H HTGE
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGE 76
T E P++C C K F + +L H HTGE
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
T E P+ C C K+F + ++ H+ HTGE
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 16 SHITDSPFHCDICGKYFSRKDHYKNHVMWHTGE 48
S + P+ C CGK F + + H + HTGE
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGETP 50
PF C+ CGK FS H H + H GE P
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
T E P +C+ C KTF+ HL H H GE+P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
T E P CN C K+F+ H+ H+ H GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
T E PF C C K F+ HL H H GE+P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
T E P KC C K+F+ HL+ H H GE+P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 79 HHCNYCAKSFTRKDHMVYHERQHTGETP 106
H C+ C + FT K H+ H+R HTGE P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 51 HRCDYCAKTFTRKEHLVNHVRQHTGESP 78
H+C C + FT K HL H R HTGE P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 135 HKCTYCMKSFTRKEHLTNHIRQHTGESP 162
H+C C + FT K HL H R HTGE P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 109 CQYCPKAFTRKDHLVNHVRRHTGESP 134
C C + FT K HL H R HTGE P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 25 CDICGKYFSRKDHYKNHVMWHTGETP 50
C CG+ F+ K H H HTGE P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C+ CG F + H + HV+ HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHS 164
E P+KC C F + HL H+ HTG P S
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C+ C F + HL HV HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C+ C F + HL HV HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC C KSF LT H R HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++CD C K+F L H R HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C+ C KSF + H+R HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C K+F L H R HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY CD+C K F L H+R HT
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTG 37
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 81 CNYCAKSFTRKDHMVYHERQHTGETP 106
CN C K+FT+ + H+R HTGE P
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 52 RCDYCAKTFTRKEHLVNHVRQHTGESP 78
+C+ C KTFT+ L H R HTGE P
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 136 KCTYCMKSFTRKEHLTNHIRQHTGESP 162
KC C K+FT+ LT H R HTGE P
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRHTGESP 134
F C C K FT+ L H R HTGE P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
P CT+CGKAF K L+ HQR+H
Sbjct: 12 PCKCTECGKAFCWKSQLIMHQRTH 35
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTG 103
E P+ CN C K+F K ++ HER H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 32.3 bits (72), Expect = 0.38, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C +CGKAF K L+ H+R+H
Sbjct: 12 PYECNECGKAFIWKSLLIVHERTH 35
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSH 273
++PY C+ C K FI K L+ H R+H
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTH 35
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E P+ C C KAF K L+ H R H G S
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVS 39
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
E P+ C+ C K F K L+ H R H G S
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVS 39
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 18/93 (19%)
Query: 219 YVC--TDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTNG 276
YVC +CGKAF+ L HQ SH + +P + P+ + C K F L H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH--EGCDKRFSLPSRLKRH------- 52
Query: 277 ITNKFHTGFPDK-----NFPKTETSFMLKHLMK 304
K H G+P K +F + LKH+ +
Sbjct: 53 --EKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 24 HCDICGKYFSRKDHYKNHVMWHTGETPHRC--DYCAKTFTRKEHLVNHVRQHTG---ESP 78
H + CGK F + + K H HT + P+ C + C K F+ L H + H G +
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 79 HHCNYCAKSFT 89
C++ K++T
Sbjct: 65 DSCSFVGKTWT 75
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 140 CMKSFTRKEHLTNHIRQHTGESPHSC--EFCDRTFTRKEHLKRHLRQH 185
C K+F + L H HT + P+ C E CD+ F+ LKRH + H
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 84 CAKSFTRKDHMVYHERQHTGETPFPC--QYCPKAFTRKDHLVNHVRRHTG---ESPHKCT 138
C K+F + + + H+ HT + P+ C + C K F+ L H + H G + C+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 139 YCMKSFT 145
+ K++T
Sbjct: 69 FVGKTWT 75
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C+DCGK+F K L HQ+ H
Sbjct: 12 PYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
E P+ C+ C KSFT K + H++ HTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGE 160
E P+KC+ C KSFT K L H + HTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGE 76
E P++C C K+FT K L H + HTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGE 132
E P+ C C K+FT K L H + HTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 165 CEFCDRTFTRKEHLKRHLRQH 185
CE C R F R+EHLKRH R H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSH 25
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGE 132
F C+ C +AF R++HL H R HT E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 53 CDYCAKTFTRKEHLVNHVRQHTGE 76
C+ C + F R+EHL H R HT E
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNE 28
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 137 CTYCMKSFTRKEHLTNHIRQHTGE 160
C C ++F R+EHL H R HT E
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNE 28
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGE 48
F C++C + F+R++H K H HT E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 18/93 (19%)
Query: 219 YVC--TDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTNG 276
YVC +CGKAF+ L HQ SH + +P + P+ + C K F L H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH--EGCDKRFSLPSRLKRH------- 52
Query: 277 ITNKFHTGFPDK-----NFPKTETSFMLKHLMK 304
K H G+P K +F + LKH+ +
Sbjct: 53 --EKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 24 HCDICGKYFSRKDHYKNHVMWHTGETPHRC--DYCAKTFTRKEHLVNHVRQHTG---ESP 78
H + CGK F + + K H HT + P+ C + C K F+ L H + H G +
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 79 HHCNYCAKSFT 89
C++ K++T
Sbjct: 65 DSCSFVGKTWT 75
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 140 CMKSFTRKEHLTNHIRQHTGESPHSC--EFCDRTFTRKEHLKRHLRQH 185
C K+F + L H HT + P+ C E CD+ F+ LKRH + H
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 84 CAKSFTRKDHMVYHERQHTGETPFPC--QYCPKAFTRKDHLVNHVRRHTG---ESPHKCT 138
C K+F + + + H+ HT + P+ C + C K F+ L H + H G + C+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 139 YCMKSFT 145
+ K++T
Sbjct: 69 FVGKTWT 75
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C+ C K F +L H R HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ CN C K F ++ H+R HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC C K F +L+ H R HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C K F +L H R HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C +CGK FR L HQR H P
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C+ CGK F + H HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E ++C C KSF+R ++ HER H+GE P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E + C C K+F+R L+ H R H+GE P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E + C+ C K+F+R L+ H R H+GE P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E + C C KSF+R L H R H+GE P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C+ C KAF L H R HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ C+ C K F L H R HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P++C C K+F + H+R HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+ C C K+F L H R HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P++C+ CGK F + H HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY+C+ C K FI L H+R HT
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTG 37
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C +CGKAF L HQR H P
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P KC C K F+R+ L H + HTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E PF C C K F+R+ L H + HTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ PF C CGK FSR+ H HTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P C C K F+R+ + H + HTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P +C C K F+R+ L H + HTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC+ C K+F R HL H R HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C KAF R HL H R HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C C K F R HL H R HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C+ C K+F R H+ H R HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C CGK F R H H HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ CN C K+F+ + + H+ HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P++C C K+F+ + LT H HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C+ CGK FS + H HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ C+ C K F+ + L H HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C CGKAF ++ +L HQ H P
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C KAF+ + L H HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHTN 275
+PY C C K FI GHL H+R HT
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTG 37
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGE 76
P+ C C KTF + HL H R HTGE
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGE 160
P++C C K+F + HL H R HTGE
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGE 132
P+ C+ C K F + HL H R HTGE
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGE 104
P+ C C K+F + H+ H+R HTGE
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGE 38
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E HRC C K F + + + H R HTGE P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E H C+ C K F + + + H R HTGE P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E H+C+ C K F + + H R HTGE P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 25 CDICGKYFSRKDHYKNHVMWHTGETP 50
C CGK+F + ++ H HTGE P
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ CD C K F+ L H R H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P++C C K+F+ LT H R H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C KAF+ L H R H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C+ C K+F+ + H+R H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ CD+C K FS H H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++PY CD+C K F L H+R H+
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSG 37
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C +CGKAFR NL HQ H P
Sbjct: 12 PYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ CN C K+F ++ H+ HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC C K+F +LT H HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C+ C K F +L H HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C KAF +L H HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C+ CGK F + H + HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E ++C+ C K F+R L H + HTGE P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E + CN C K F+R + H++ HTGE P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ C+ CGK FSR H HTGE P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E +KC C K F+R L+ H + HTGE P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E + C C K F+R L H + HTGE P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 106 PFPC--QYCPKAFTRKDHLVNHVRRHTGE 132
PF C YC K FTR D L H R HTGE
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 82 NYCAKSFTRKDHMVYHERQHTGE 104
+YC K FTR D + H+R HTGE
Sbjct: 8 SYCGKRFTRSDELQRHKRTHTGE 30
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 134 PHKCT--YCMKSFTRKEHLTNHIRQHTGE 160
P CT YC K FTR + L H R HTGE
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 55 YCAKTFTRKEHLVNHVRQHTGE 76
YC K FTR + L H R HTGE
Sbjct: 9 YCGKRFTRSDELQRHKRTHTGE 30
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 75 GESPHHCNYCAKSFTRKDHMV--YHERQHTGETPFPCQYCPKAFTRKDHLVNHVR 127
GE + C C++ +T + Y +PC +C K FTRKD++ HV+
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 103 GETPFPCQYCPKAFTRKDHLVNHV----RRHTGESPHKCTYCMKSFTRKEHLTNHIR 155
GE + C+ C + +T + H +R+ P C +C K FTRK+++T H++
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYP--CPFCFKEFTRKDNMTAHVK 61
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 47 GETPHRCDYCAKTFTRKEHLVNHVRQHTGE-----SPHHCNYCAKSFTRKDHMVYHER 99
GE +RC C++ +T H+ N R + + C +C K FTRKD+M H +
Sbjct: 7 GEHTYRCKVCSRVYT---HISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 131 GESPHKCTYCMKSFTRKEHLTNHIRQHTGE-----SPHSCEFCDRTFTRKEHLKRHLR 183
GE ++C C + +T H++N R + + C FC + FTRK+++ H++
Sbjct: 7 GEHTYRCKVCSRVYT---HISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
E P+ CN C K+F H+ H R HT ET
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E P+ C C KAF HL H+R HT E+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
E P+ C C K+F HL H+R HT E+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHT 274
++PY C++C K F+ HL H R HT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
E P+ C+ C K F HL H+R HT E+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 160 ESPHSCEFCDRTFTRKEHLKRHLRQH 185
E P+SC C + F HL +HLR H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGET 49
+ P+ C++CGK F H H+ HT ET
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQK 243
PY C CGKAF L +L H R H +
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVHTQ 37
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P++C C KSF ++ H+R H+GE P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C +CGK+FR L+ HQR H P
Sbjct: 12 PYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ C C K+F L+ H R H+GE P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C+ C K+F L+ H R H+GE P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+ C C KSF L H R H+GE P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C+ C K+F+ + + H+R H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P++C+ C K+F+ ++ L+ H R H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ C C K F+ ++ L H R H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C KAF+ + L H R H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C+ CGKAF + +L HQR H P
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C +CGK FS + H H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 77 SPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
+P+ C+ C KSF+ K ++ H+R HT E P
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 133 SPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
+P+KC+ C KSF+ K L H R HT E P
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
P++C C K+F+ K L+ H R HT E P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY C+ C K+F K L+ HQR H + P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
P+ C C K+F+ K L+ H R HT E P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 165 CEFCDRTFTRKEHLKRHLRQH 185
CE C R F R+E+LKRH R H
Sbjct: 5 CEVCTRAFARQEYLKRHYRSH 25
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGE 132
F C+ C +AF R+++L H R HT E
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNE 28
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 53 CDYCAKTFTRKEHLVNHVRQHTGE 76
C+ C + F R+E+L H R HT E
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNE 28
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 137 CTYCMKSFTRKEHLTNHIRQHTGE 160
C C ++F R+E+L H R HT E
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNE 28
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGE 48
F C++C + F+R+++ K H HT E
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNE 28
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C +CGK ++ + +L FHQR H
Sbjct: 12 PYKCVECGKGYKRRLDLDFHQRVH 35
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
E P+ C C K + R+ + +H+R HTGE
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGE 160
E P+KC C K + R+ L H R HTGE
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGE 76
E P++C C K + R+ L H R HTGE
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGE 132
E P+ C C K + R+ L H R HTGE
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
+G+ P CN C K+F + + H+R H+GE P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
+G+ P C+ C KTF + L H R H+GE P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
P VC +CGK FR L HQR H P
Sbjct: 10 PLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
+G+ P C C K F + L H R H+GE P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
+G+ P C C K+F + L+ H R H+GE P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C DCGK + + NL HQR H
Sbjct: 12 PYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGE 76
E P++C+ C K + R+ +L H R H GE
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGE 160
E P+KC C K + R+ +L H R H GE
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
E P+ C C K + R+ ++ H+R H GE
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGE 132
E P+ C+ C K + R+ +L H R H GE
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E PF C C + FT++++LV H R H +S
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHT 102
E+P C+ C + FT+++++V HER H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
E P +C C + FT++ +LV H R H +S
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 160 ESPHSCEFCDRTFTRKEHLKRHLRQH 185
E+P C CDR FT++ +L +H R H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
E+P KC+ C + FT++ +L H R H +S
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRH 129
TG PF C C +F+R DHL H +RH
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQH 101
TG P C C SF+R DH+ H ++H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 158 TGESPHSCEFCDRTFTRKEHLKRHLRQHL 186
TG P C CD +F+R +HL H ++H+
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRHM 31
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 219 YVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
Y C++CGKAF K L HQR H+ P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 79 HHCNYCAKSFTRKDHMVYHERQHTGETP 106
+ C+ C K+F +K + H+R H GE P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRHTGESP 134
+ C C KAF +K L H R H GE P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 135 HKCTYCMKSFTRKEHLTNHIRQHTGESP 162
++C+ C K+F +K L+ H R H GE P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRH 129
E P+ C C K F R HL+ H++RH
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQH 73
E P+ C+ C K F R HL+ H+++H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQH 101
E P+ CN C K+F R H++ H ++H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQH 157
E P+ C C K+F R HL H+++H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSH 273
+RPY C+ C K+F HL+ H + H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 160 ESPHSCEFCDRTFTRKEHLKRHLRQHL 186
E P+ C C + F R HL HL++H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHF 36
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 108 PCQYCPKAFTRKDHLVNHV-RRHTG---ESPHKCTY--C---MKSFTRKEHLTNHIRQHT 158
P + C + F+ LV HV H G ++ H C + C KSF K L NHIR HT
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 159 GE 160
GE
Sbjct: 87 GE 88
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 56 CAKTFTRKEHLVNHV-RQHTGESPHHCNYC--------AKSFTRKDHMVYHERQHTGETP 106
C +TF+ LV HV +H G + + C KSF K +V H R HTGE
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKS 90
Query: 107 FP 108
P
Sbjct: 91 GP 92
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 52 RCDYCAKTFTRKEHLVNHVRQHTGE 76
C K+F K LVNH+R HTGE
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGE 88
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 165 CEFCDRTFTRKEHLKRHLRQH 185
CE C R F R+E LKRH R H
Sbjct: 5 CEVCTRAFARQEALKRHYRSH 25
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGE 132
F C+ C +AF R++ L H R HT E
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNE 28
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 53 CDYCAKTFTRKEHLVNHVRQHTGE 76
C+ C + F R+E L H R HT E
Sbjct: 5 CEVCTRAFARQEALKRHYRSHTNE 28
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 137 CTYCMKSFTRKEHLTNHIRQHTGE 160
C C ++F R+E L H R HT E
Sbjct: 5 CEVCTRAFARQEALKRHYRSHTNE 28
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C+ C K + K +L H + HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC C K + K +L H + HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C C K + K ++ H++ HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C+ C K + K +L H + HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C CGK + K NL HQ+ H
Sbjct: 12 PYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C+ CGK ++ K + H HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC C K+F T H R HTG+ P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C C KAF H R HTG+ P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P+ C C K+F H+R HTG+ P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C C K F H R HTG+ P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E PF C C KAF+ L H R HTGE P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P C C K+F+ L H R HTGE P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ PF C CGK FS H HTGE P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P C C K+F+ + H R HTGE P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P C C K F+ L H R HTGE P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGETP 106
P+ CN C K+F+ + H+ HTGE P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
PY+C +CGKAF + +L HQ H P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGETP 50
P+ C+ CGK FS H + HTGE P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
P+ C+ C K F+ L H HTGE P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
P+ C C KAF+ L H HTGE P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
P+ C C K+F+ LT H HTGE P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E PF C+ C K F +H R H+GE P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P +C+ C K F +H R H+GE P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
E P C C K F H+R H+GE P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P KC C K F +H R H+GE P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
P+ C +CGK F HQRSH P
Sbjct: 12 PFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
++P+ C+ C K F SH+RSH+
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSG 37
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 102 TGETPFPCQY--CPKAFTRKDHLVNHVRRH 129
TG PF C + C ++F+R DHL H +RH
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 74 TGESPHHCNY--CAKSFTRKDHMVYHERQH 101
TG P C + C +SF+R DH+ H ++H
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 158 TGESPHSCEF--CDRTFTRKEHLKRHLRQHL 186
TG P C + CDR+F+R +HL H ++H+
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRHM 33
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 130 TGESPHKCTY--CMKSFTRKEHLTNHIRQH 157
TG P +CT+ C +SF+R +HL H ++H
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+PC+ C F L +H+R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETP 50
+ P+ C+ICG F K+H+ HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P+ C+ C F + L +H+R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHS 164
E P+ C C F + L +H+R HTG P S
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHT 74
+GE P+ C C +TF+ LV H + HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 244 GMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
G ++PY C C + F D LV H++ HT
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHT 130
+GE P+ C C + F+ + LV H + HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHT 102
+GE P+ C C ++F+ + +V H++ HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 158 TGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE P+SC C TF+ L +H + H
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMH 33
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRHTGE 132
F C CPK F R DHL H++ H +
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNK 28
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 1)
Length = 37
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 24 HCDICGKYFSRKDHYKNHVMWHTGE 48
H CGK + + H + H+ WHTGE
Sbjct: 12 HIQGCGKVYGKTSHLRAHLRWHTGE 36
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHT 130
+G+ PF C+ C AFT K + H++ HT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 251 YHCDLCPKDFIDKGHLVSHRRSHTN 275
Y C LC + F++K L H+R H N
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
E P++C+ C K F + L H HTGE P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 20 DSPFHCDICGKYF-SRKDHYKNHVMWHTGETP 50
+ P+ C+ CGK F R+D Y +H M HTGE P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHH-MVHTGEKP 40
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
E P+KC C K F + L H HTGE P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
E P+ C+ C K F + L H HTGE P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 25 CDICGKYFSRKDHYKNHVMWHTGETPH 51
C+ICGK F H H + H+GE P+
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 189 SEFNCIICTEPFNDKASLLEHLR--SHPRDCPYVCTDCGKAF 228
S+F C +C PF+ SL +H+R H + CP C K F
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPV----CKKEF 110
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGE 132
P C+ C K FT +L H+R H+GE
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGE 28
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 133 SPHKCTYCMKSFTRKEHLTNHIRQHTGE 160
P KC C K FT +L H+R H+GE
Sbjct: 1 GPLKCRECGKQFTTSGNLKRHLRIHSGE 28
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGE 76
P +C C K FT +L H+R H+GE
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGE 28
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 21 SPFHCDICGKYFSRKDHYKNHVMWHTGE 48
P C CGK F+ + K H+ H+GE
Sbjct: 1 GPLKCRECGKQFTTSGNLKRHLRIHSGE 28
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 189 SEFNCIICTEPFNDKASLLEHLRSHPRD 216
S + C +C F+ ++L EHLRS RD
Sbjct: 97 SSYVCNVCNARFSTMSALSEHLRSDHRD 124
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 29.3 bits (64), Expect = 3.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 189 SEFNCIICTEPFNDKASLLEHLRSHPRD 216
S + C +C F+ ++L EHLRS RD
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRD 142
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRHTGE 132
F C+YC K F K L H+R HT E
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNE 35
>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
Length = 33
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRH 129
F C CPK F R DHL H+ H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLH 25
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRS 272
RPYHC C F KG+L H +S
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKHMKS 24
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTG 47
P+ C +CGK FS K + H HTG
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVR-RHTGESP 134
P+ C C KAF + L+ H R HTGE P
Sbjct: 12 PYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVR-QHTGESP 78
P+ C C K F + L+ H R HTGE P
Sbjct: 12 PYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKG 244
PY C +CGKAF +L+ H R + G
Sbjct: 12 PYECIECGKAFIQNTSLIRHWRYYHTG 38
>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
Length = 29
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRHTGE 132
F C CPK F R DHL H+ H +
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENK 28
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 104 ETPFPCQY--CPKAFTRKDHLVNHVRRHTGESP 134
E PF C + C F+R D L H R H+G P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 132 ESPHKCTY--CMKSFTRKEHLTNHIRQHTGESP 162
E P CT+ C F+R + L+ H R H+G P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 76 ESPHHCNY--CAKSFTRKDHMVYHERQHTGETP 106
E P C + C F+R D + H R H+G P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGESP 162
P++C+ C KSF+ LT H HT E P
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 79 HHCNYCAKSFTRKDHMVYHERQHT 102
++CN C K+FTR H+ H++ HT
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHT 36
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 25 CDICGKYFSRKDHYKNHVMWHTGE 48
CD+CGK F K K+H + HT +
Sbjct: 12 CDMCGKKFKSKGTLKSHKLLHTAD 35
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGE 160
P+ C +C + F L H+R HTGE
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGE 29
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQH 73
P+ C+ C K F + L NH+R H
Sbjct: 2 PYVCERCGKRFVQSSQLANHIRHH 25
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRH 129
P+ C+ C K F + L NH+R H
Sbjct: 2 PYVCERCGKRFVQSSQLANHIRHH 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,384,932
Number of Sequences: 62578
Number of extensions: 483327
Number of successful extensions: 3182
Number of sequences better than 100.0: 198
Number of HSP's better than 100.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1360
Number of HSP's gapped (non-prelim): 1594
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)