RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13470
(355 letters)
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 47.0 bits (111), Expect = 8e-06
Identities = 44/209 (21%), Positives = 67/209 (32%), Gaps = 18/209 (8%)
Query: 39 KNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGES-PHHCNYCAKSFTRKDHMVYH 97
+ + R + + G S P C SF+R + H
Sbjct: 249 SSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRH 308
Query: 98 ERQ--HTGETPFPCQ----YCPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEH 149
R H+GE+ P C K F+R D L H+ HT SP K F+ +
Sbjct: 309 LRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLN 368
Query: 150 -----LTNHIRQHTGESPHSCE--FCDRTFTRKEHLKRHLRQHL--PGSEFNCIICTEPF 200
+ + C R F R +L H+ HL C++ F
Sbjct: 369 NEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSF 428
Query: 201 NDKASLLEHLRSHPRDCPYVCTDCGKAFR 229
N +L+ H + H P +C+ R
Sbjct: 429 NRHYNLIPHKKIHTNHAPLLCSILKSFRR 457
Score = 35.1 bits (80), Expect = 0.049
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 49 TPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKD 92
P C C +F+R EHL H+R HTGE P C+Y +
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSR 75
Score = 28.5 bits (63), Expect = 6.7
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 19 TDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGE 76
P C C FSR +H H+ HTGE P +C Y C K+F+R L H+R H
Sbjct: 30 APRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNN 89
Query: 77 SPH 79
Sbjct: 90 PSD 92
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 36.8 bits (85), Expect = 0.004
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 189 SEFNCIICTEPFNDKASLLEHLR--SHPRDCPYVCTDCGKAFRLKGNLMFH 237
S + C +C PF+ SL +H+R H + CP CGK FR + + H
Sbjct: 72 SPYVCPLCLMPFSSSVSLKQHIRYTEHSKVCPV----CGKEFRNTDSTLDH 118
Score = 31.8 bits (72), Expect = 0.20
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 21 SPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHV 70
SP+ C +C FS K H+ + E C C K F + ++HV
Sbjct: 72 SPYVCPLCLMPFSSSVSLKQHIRY--TEHSKVCPVCGKEFRNTDSTLDHV 119
Score = 29.1 bits (65), Expect = 1.6
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 105 TPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHI 154
+P+ C C F+ L H+R E C C K F + +H+
Sbjct: 72 SPYVCPLCLMPFSSSVSLKQHIR--YTEHSKVCPVCGKEFRNTDSTLDHV 119
Score = 28.3 bits (63), Expect = 3.3
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 77 SPHHCNYCAKSFTR----KDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHV 126
SP+ C C F+ K H+ Y E C C K F D ++HV
Sbjct: 72 SPYVCPLCLMPFSSSVSLKQHIRYTEHSKV------CPVCGKEFRNTDSTLDHV 119
Score = 27.5 bits (61), Expect = 5.4
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 133 SPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHL 182
SP+ C C+ F+ L HIR E C C + F + H+
Sbjct: 72 SPYVCPLCLMPFSSSVSLKQHIRY--TEHSKVCPVCGKEFRNTDSTLDHV 119
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 33.5 bits (77), Expect = 0.007
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 121 HLVNHVRRHTGESPHKCTYCMKSFTR 146
+L H+R HTGE P+KC C KSF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 32.4 bits (74), Expect = 0.014
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 149 HLTNHIRQHTGESPHSCEFCDRTFTR 174
+L H+R HTGE P+ C C ++F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 32.4 bits (74), Expect = 0.015
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 65 HLVNHVRQHTGESPHHCNYCAKSFTR 90
+L H+R HTGE P+ C C KSF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 32.0 bits (73), Expect = 0.022
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 93 HMVYHERQHTGETPFPCQYCPKAFTR 118
++ H R HTGE P+ C C K+F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 29.7 bits (67), Expect = 0.13
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 37 HYKNHVMWHTGETPHRCDYCAKTFTR 62
+ + H+ HTGE P++C C K+F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 26.2 bits (58), Expect = 3.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 205 SLLEHLRSHPRDCPYVCTDCGKAF 228
+L H+R+H + PY C CGK+F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSF 24
Score = 25.4 bits (56), Expect = 4.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 14 RRSHITDSPFHCDICGKYFSR 34
R+H + P+ C +CGK FS
Sbjct: 6 MRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 29.6 bits (67), Expect = 0.16
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 164 SCEFCDRTFTRKEHLKRHLRQH 185
C C ++F+RK +LKRHLR H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 28.5 bits (64), Expect = 0.37
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 109 CQYCPKAFTRKDHLVNHVRRH 129
C C K+F+RK +L H+R H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 27.7 bits (62), Expect = 0.82
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 220 VCTDCGKAFRLKGNLMFHQRSH 241
C DCGK+F K NL H R+H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 27.3 bits (61), Expect = 0.84
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 25 CDICGKYFSRKDHYKNHVMWH 45
C CGK FSRK + K H+ H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 26.9 bits (60), Expect = 1.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 52 RCDYCAKTFTRKEHLVNHVRQH 73
+C C K+F+RK +L H+R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.8 bits (57), Expect = 3.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 136 KCTYCMKSFTRKEHLTNHIRQH 157
KC C KSF+RK +L H+R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 29.0 bits (65), Expect = 0.28
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 163 HSCEFCDRTFTRKEHLKRHLRQH 185
+ C C + F K L+ H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.8 bits (62), Expect = 0.72
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 135 HKCTYCMKSFTRKEHLTNHIRQH 157
++C C K F K L H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.4 bits (61), Expect = 0.83
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 51 HRCDYCAKTFTRKEHLVNHVRQH 73
+RC C K F K L H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 26.7 bits (59), Expect = 1.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRH 129
+ C C K F K L H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 2.9
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 79 HHCNYCAKSFTRKDHMVYHERQH 101
+ C C K F K + H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 24.7 bits (54), Expect = 7.8
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 251 YHCDLCPKDFIDKGHLVSHRRSH 273
Y C C K F K L H R+H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 24.7 bits (54), Expect = 8.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 219 YVCTDCGKAFRLKGNLMFHQRSH 241
Y C +CGK F+ K L H R+H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|215056 PLN00104, PLN00104, MYST -like histone acetyltransferase;
Provisional.
Length = 450
Score = 32.4 bits (74), Expect = 0.40
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 165 CEFCDRTFTRKEHLKRHLRQ----HLPGSE 190
CEFC + RKE L+RH+++ H PG E
Sbjct: 201 CEFCLKFMKRKEQLQRHMKKCDLKHPPGDE 230
>gnl|CDD|222775 PHA00080, PHA00080, DksA-like zinc finger domain containing
protein.
Length = 72
Score = 28.9 bits (65), Expect = 0.69
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 146 RKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDK 203
R+ L N ++ S CE C + + R+ +PG C+ C E K
Sbjct: 15 RERALANRRNKYQAPSATHCEECG------DPIPEARREAVPGCRT-CVSCQEILELK 65
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 26.8 bits (59), Expect = 1.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 163 HSCEFCDRTFTRKEHLKRHLRQH 185
C C ++F+ K+ LKRHLR+H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 25.7 bits (56), Expect = 3.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRH 129
F C C K+F+ KD L H+R+H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 25.3 bits (55), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWH 45
F C +CGK FS KD K H+ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 24.9 bits (54), Expect = 7.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 135 HKCTYCMKSFTRKEHLTNHIRQH 157
KC C KSF+ K+ L H+R+H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 24.9 bits (54), Expect = 7.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 51 HRCDYCAKTFTRKEHLVNHVRQH 73
+C C K+F+ K+ L H+R+H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 29.9 bits (67), Expect = 2.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 328 LPVLPPPPNIHLPPPPPP 345
P P PP+ H P PPPP
Sbjct: 2612 APPSPLPPDTHAPDPPPP 2629
>gnl|CDD|241426 cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bisphosphate
4-phosphatase and Type II inositol 3,4-bisphosphate
4-phosphatase Pleckstrin homology (PH) domain. INPP4A
(also called Inositol polyphosphate 4-phosphatase type
I) and INPP4B (also called Inositol polyphosphate
4-phosphatase type II) both catalyze the hydrolysis of
the 4-position phosphate of phosphatidylinositol
3,4-bisphosphate and inositol 1,3,4-trisphosphate. They
differ in that INPP4A additionally catalyzes the
hydrolysis of the 4-position phosphate of inositol
3,4-bisphosphate, while INPP4B catalyzes the hydrolysis
of the 4-position phosphate of inositol
1,4-bisphosphate. They both have a single PH domain
followed by a C2 domain. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 116
Score = 28.0 bits (63), Expect = 3.4
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 228 FRLKGNLMFHQRSHQKG 244
F+L+GNL+F+ +S++ G
Sbjct: 20 FKLRGNLLFYFKSNEPG 36
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 28.9 bits (64), Expect = 4.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 326 VGLPVLPPPPNIHLPPPPPPNLLAAVT 352
+ +P L PP + P P+ LA+
Sbjct: 385 LAIPSLVAPPGLVAPTEINPSFLASPR 411
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 27.2 bits (61), Expect = 4.9
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 137 CTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRT-FTRKEHLKRHLRQHLPGSEFNCII 195
C +C + E H+ + H +R E L +LR+ + C+
Sbjct: 2 CLFCNHTSDTVEENLEHMFKS-----HGFFIPEREYLVDLEGLLNYLREKI-HEGNECLY 55
Query: 196 CTEPFNDKASLLEHLRS 212
C + F +L +H+R
Sbjct: 56 CGKQFKSLEALRQHMRD 72
>gnl|CDD|221194 pfam11736, DUF3299, Protein of unknown function (DUF3299). This is
a family of bacterial proteins of unknown function.
Length = 144
Score = 28.0 bits (63), Expect = 5.0
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 337 IHLPPPPP 344
IH+PPPPP
Sbjct: 85 IHVPPPPP 92
>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type. This is a zinc-finger
domain with the CxxCx(12)Hx(6)H motif, found in multiple
copies in a wide range of proteins from plants to
metazoans. Some member proteins, particularly those from
plants, are annotated as being RNA-binding.
Length = 25
Score = 25.2 bits (56), Expect = 5.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 165 CEFCDRTFTRKEHLKRHLR 183
CE C+ TFT + LK HLR
Sbjct: 3 CELCNVTFTSESQLKSHLR 21
Score = 24.8 bits (55), Expect = 7.7
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 23 FHCDICGKYFSRKDHYKNH 41
F+C++C F+ + K+H
Sbjct: 1 FYCELCNVTFTSESQLKSH 19
>gnl|CDD|173359 PTZ00064, PTZ00064, histone acetyltransferase; Provisional.
Length = 552
Score = 28.8 bits (64), Expect = 5.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 160 ESPHSCEFCDRTFTRKEHLKRHLR----QHLPGSE 190
++ H CE+C F ++ L RHL +H PG+E
Sbjct: 278 DTLHFCEYCLDFFCFEDELIRHLSRCQLRHPPGNE 312
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.467
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,786,600
Number of extensions: 1592007
Number of successful extensions: 3199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3122
Number of HSP's successfully gapped: 107
Length of query: 355
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 257
Effective length of database: 6,590,910
Effective search space: 1693863870
Effective search space used: 1693863870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.1 bits)