RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13470
(355 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 185 bits (473), Expect = 3e-58
Identities = 73/183 (39%), Positives = 104/183 (56%)
Query: 59 TFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTR 118
+ V GE P+ C C KSF+R DH+ H+R HTGE P+ C C K+F+
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 119 KDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHL 178
K L H R HTGE P+KC C KSF+++ +L H R HTGE P++C C ++F++ HL
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 179 KRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQ 238
+ H R H + C C + F+ + +L H R+H + PY C +CGK+F + L HQ
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Query: 239 RSH 241
R+H
Sbjct: 182 RTH 184
Score = 184 bits (471), Expect = 8e-58
Identities = 77/171 (45%), Positives = 106/171 (61%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHT 74
+ P+ C CGK FSR DH H HTGE P++C C K+F+ K+ L H R HT
Sbjct: 14 ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT 73
Query: 75 GESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
GE P+ C C KSF+++ ++ H+R HTGE P+ C C K+F++ HL H R HTGE P
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP 133
Query: 135 HKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+KC C KSF+R+++L H R HTGE P+ C C ++F+R++ L H R H
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 161 bits (410), Expect = 1e-48
Identities = 68/148 (45%), Positives = 93/148 (62%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHT 74
R+H + P+ C CGK FS K H HTGE P++C C K+F+++ +L H R HT
Sbjct: 42 RTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHT 101
Query: 75 GESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
GE P+ C C KSF++ H+ H+R HTGE P+ C C K+F+R+D+L H R HTGE P
Sbjct: 102 GEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP 161
Query: 135 HKCTYCMKSFTRKEHLTNHIRQHTGESP 162
+KC C KSF+R++ L H R HTG+
Sbjct: 162 YKCPECGKSFSRRDALNVHQRTHTGKKT 189
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 149 bits (379), Expect = 4e-44
Identities = 54/186 (29%), Positives = 76/186 (40%), Gaps = 17/186 (9%)
Query: 15 RSHITDSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHLVNHV 70
+ + C CG +++ + H+ HTGE P C C K FT HL H
Sbjct: 5 ALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS 64
Query: 71 RQHTGESPHHCN--YCAKSFTRKDHMVYHERQHTGE--TPFPCQY--CPKAFTRKDHLVN 124
HTGE C+ C FT K +M H + + C + C KAF + + L
Sbjct: 65 LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKV 124
Query: 125 HVRRHTGESPHKCT--YCMKSFTRKEHLTNHIRQHTGES---PHSCEFCDRTFTRKEHLK 179
H HT + P++C C K F+ L H + H G SC F +T+T +LK
Sbjct: 125 HQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT--LYLK 182
Query: 180 RHLRQH 185
H
Sbjct: 183 HVAECH 188
Score = 148 bits (377), Expect = 8e-44
Identities = 50/184 (27%), Positives = 71/184 (38%), Gaps = 12/184 (6%)
Query: 40 NHVMWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMV 95
+ C + C + + L H+ +HTGE P C C K FT H+
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 96 YHERQHTGETPFPC--QYCPKAFTRKDHLVNHVRRHTGE--SPHKCTY--CMKSFTRKEH 149
H HTGE F C C FT K ++ H R + C + C K+F +
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Query: 150 LTNHIRQHTGESPHSC--EFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLL 207
L H HT + P+ C E CD+ F+ LKRH + H C+ L
Sbjct: 122 LKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYL 181
Query: 208 EHLR 211
+H+
Sbjct: 182 KHVA 185
Score = 143 bits (364), Expect = 6e-42
Identities = 53/220 (24%), Positives = 74/220 (33%), Gaps = 43/220 (19%)
Query: 67 VNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHL 122
+ + C++ C ++ + + H +HTGE PFPC+ C K FT HL
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHL 60
Query: 123 VNHVRRHTGESPHKCT--YCMKSFTRKEHLTNHIRQHTGE--SPHSCEF--CDRTFTRKE 176
H HTGE C C FT K ++ H + + C F C + F +
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHN 120
Query: 177 HLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCT--DCGKAFRLKGNL 234
LK H H T PY C C K F L L
Sbjct: 121 QLKVHQFSH-----------T---QQL--------------PYECPHEGCDKRFSLPSRL 152
Query: 235 MFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
H++ H G P + C K + +L H
Sbjct: 153 KRHEKVH-AGYPCKKDDSCSFVGKTW--TLYLKHVAECHQ 189
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 141 bits (357), Expect = 1e-41
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQ---H 101
+G + C C K F K +L H R+HTGE P C C K + RK++++ HE + +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNH-IRQHTGE 160
E F C C + F R+ L H+ HTGE P+KC+ C + F +K+ L +H I+ H+G
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Score = 131 bits (331), Expect = 6e-38
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 73 HTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRR---H 129
+G S C C K F K ++ H R+HTGE PF C C K + RK++L+ H R +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRH 181
E C+ C ++F R+ L H+ HTGE P+ C C + F +K+ L+ H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 124 bits (313), Expect = 3e-35
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQ---HTGESP 78
C C K F K + K H HTGE P C C K + RKE+L+ H + + E
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 79 HHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRR-HTGE 132
C+ C ++F R+ + H HTGE P+ C C + F +K L +H+ + H+G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Score = 113 bits (286), Expect = 3e-31
Identities = 41/145 (28%), Positives = 59/145 (40%), Gaps = 32/145 (22%)
Query: 101 HTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQ---H 157
+G + C C K F K +L H R+HTGE P +C C K + RKE+L H + +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 158 TGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDC 217
E +C C TF R+ L+ H+ SH +
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRL----------------------------HMVSHTGEM 93
Query: 218 PYVCTDCGKAFRLKGNLMFHQ-RSH 241
PY C+ C + F K +L H + H
Sbjct: 94 PYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 106 bits (267), Expect = 2e-28
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 30/147 (20%)
Query: 129 HTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPG 188
+G S +C C K F K +L H R+HTGE P C C + + RKE+L H ++
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN--- 58
Query: 189 SEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMD 248
+ + + C+ C + FR + L H SH +
Sbjct: 59 ----------------------CMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG----E 92
Query: 249 RPYHCDLCPKDFIDKGHLVSH-RRSHT 274
PY C C + F+ K L SH + H+
Sbjct: 93 MPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 90.3 bits (225), Expect = 2e-22
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNH---VMWHTGETPHRCDYCAKTFTRKEHLVNHVR 71
R H + PF C CGK + RK++ H + E C C +TF R+ L H+
Sbjct: 28 RKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV 87
Query: 72 QHTGESPHHCNYCAKSFTRKDHMVYH-ERQHTGE 104
HTGE P+ C+ C++ F +K + H + H+G
Sbjct: 88 SHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGP 121
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 137 bits (347), Expect = 6e-40
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 15/153 (9%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMW---HTGETPHRCDYC-----AKTFTRKEHLVNHVRQH 73
D C + F ++ +H+ H C + + F + LV H+R+H
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Query: 74 TGESPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRR- 128
TGE PH C + C KS++R +++ H R HTGE P+ C++ C KAF+ H R
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 129 HTGESPHKCTY--CMKSFTRKEHLTNHIRQHTG 159
H+ E P+ C C K +T L H++ G
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 128 bits (324), Expect = 2e-36
Identities = 56/203 (27%), Positives = 81/203 (39%), Gaps = 59/203 (29%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQ---HTGESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
ET R D C++ F +E LV+H+ H C++
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG------------------- 41
Query: 105 TPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHTGESP 162
C + F + LV H+RRHTGE PHKCT+ C KS++R E+L H+R HTGE P
Sbjct: 42 ----CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP 97
Query: 163 HSCEF--CDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYV 220
+ CE C + F+ +H R+H + PYV
Sbjct: 98 YMCEHEGCSKAFSNASDRAKH---------------------------QNRTHSNEKPYV 130
Query: 221 CT--DCGKAFRLKGNLMFHQRSH 241
C C K + +L H ++
Sbjct: 131 CKLPGCTKRYTDPSSLRKHVKTV 153
Score = 112 bits (283), Expect = 2e-30
Identities = 51/186 (27%), Positives = 76/186 (40%), Gaps = 47/186 (25%)
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRR---HTGESPHKCTYC-----MKSFTRKEHLTNHIR 155
ET C + F ++ LV+H+ H C + ++ F + L H+R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 156 QHTGESPHSCEF--CDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSH 213
+HTGE PH C F C ++++R E+LK HLR SH
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLR----------------------------SH 92
Query: 214 PRDCPYVCT--DCGKAFRLKGNLMFHQ-RSHQKGMPMDRPYHCDL--CPKDFIDKGHLVS 268
+ PY+C C KAF + HQ R+H ++PY C L C K + D L
Sbjct: 93 TGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS----NEKPYVCKLPGCTKRYTDPSSLRK 148
Query: 269 HRRSHT 274
H ++
Sbjct: 149 HVKTVH 154
Score = 103 bits (259), Expect = 5e-27
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 14 RRSHITDSPFHCDICG-----KYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHL 66
H F C G + F + H+ HTGE PH+C + C K+++R E+L
Sbjct: 26 EHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENL 85
Query: 67 VNHVRQHTGESPHHCNY--CAKSFTRKDHMVYH-ERQHTGETPFPCQY--CPKAFTRKDH 121
H+R HTGE P+ C + C+K+F+ H R H+ E P+ C+ C K +T
Sbjct: 86 KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSS 145
Query: 122 LVNHVRRHTG 131
L HV+ G
Sbjct: 146 LRKHVKTVHG 155
Score = 27.9 bits (63), Expect = 2.8
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 6/36 (16%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHTNGITNKFHTG 284
D C ++F + LV H + H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHIN------SEHIHGE 31
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 134 bits (339), Expect = 1e-38
Identities = 44/151 (29%), Positives = 56/151 (37%), Gaps = 13/151 (8%)
Query: 28 CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHH------- 80
G + + C +TF+ LV HV P
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 81 --CNYCAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRHTGESPHK 136
C KSF K +V H R HTGE PFPC + C K F R ++L H R HTGE P K
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 137 CTY--CMKSFTRKEHLTNHIRQHTGESPHSC 165
C + C + F H+ HT +
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 122 bits (307), Expect = 4e-34
Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 13/138 (9%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHR---------CDYCAKTFTRKE 64
+ C + FS HV P + C K+F K
Sbjct: 17 KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 65 HLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKD 120
LVNH+R HTGE P C + C K F R +++ H+R HTGE PF C++ C + F
Sbjct: 77 KLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSS 136
Query: 121 HLVNHVRRHTGESPHKCT 138
H+ HT + +
Sbjct: 137 DRKKHMHVHTSDKSGPSS 154
Score = 117 bits (294), Expect = 3e-32
Identities = 42/184 (22%), Positives = 57/184 (30%), Gaps = 45/184 (24%)
Query: 84 CAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHK------- 136
S + + + P + C + F+ LV HV P +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 137 --CTYCMKSFTRKEHLTNHIRQHTGESPHSCEF--CDRTFTRKEHLKRHLRQHLPGSEFN 192
C KSF K L NHIR HTGE P C F C + F R E+LK
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKI------------ 110
Query: 193 CIICTEPFNDKASLLEHLRSHPRDCPYVCT--DCGKAFRLKGNLMFHQRSHQKGMPMDRP 250
H R+H + P+ C C + F + H H D+
Sbjct: 111 ----------------HKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT----SDKS 150
Query: 251 YHCD 254
Sbjct: 151 GPSS 154
Score = 103 bits (258), Expect = 6e-27
Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 27/168 (16%)
Query: 112 CPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRT 171
+ ++ + C ++F+ L H+ P
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY- 61
Query: 172 FTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCT--DCGKAFR 229
C + F K L+ H+R H + P+ C CGK F
Sbjct: 62 ------------------WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFA 103
Query: 230 LKGNLMFHQRSHQKGMPMDRPYHCDL--CPKDFIDKGHLVSHRRSHTN 275
NL H+R+H ++P+ C+ C + F + H HT+
Sbjct: 104 RSENLKIHKRTHTG----EKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
Score = 88.1 bits (219), Expect = 2e-21
Identities = 33/105 (31%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 9 TIHAERRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHL 66
+ +++ C GK F K NH+ HTGE P C + C K F R E+L
Sbjct: 49 HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENL 108
Query: 67 VNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPC 109
H R HTGE P C + C + F H HT + P
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 38.4 bits (90), Expect = 0.001
Identities = 6/52 (11%), Positives = 13/52 (25%), Gaps = 4/52 (7%)
Query: 223 DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
G + + + + + C + F LV+H
Sbjct: 2 SSGSSGQPIKQELSCKWIDEA----QLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 127 bits (321), Expect = 2e-36
Identities = 48/118 (40%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 74 TGESPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRH 129
+ + P C Y C K + + H+ H R+HTGE P+ C + C + F+R D L H RRH
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEF--CDRTFTRKEHLKRHLRQH 185
TG P +C C + F+R +HL H R HTGE P SC + C + F R + L RH H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 124 bits (315), Expect = 1e-35
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 46 TGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQH 101
+ + P C Y C K + + HL H R+HTGE P+ C++ C + F+R D + H+R+H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 102 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQH 157
TG PF C+ C + F+R DHL H R HTGE P C + C K F R + L H H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 114 bits (289), Expect = 8e-32
Identities = 48/114 (42%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 22 PFHCD--ICGKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGES 77
PF C C K + + H + H HTGE P++CD+ C + F+R + L H R+HTG
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRH 129
P C C + F+R DH+ H R HTGE PF C++ C K F R D LV H H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 93.4 bits (233), Expect = 1e-23
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 38/150 (25%)
Query: 130 TGESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEF--CDRTFTRKEHLKRHLRQH 185
+ + P C Y C K + + HL H R+HTGE P+ C+F C+R F+R + LKRH R+H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 186 LPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGM 245
K P+ C C + F +L H R+H
Sbjct: 62 T--------------GVK--------------PFQCKTCQRKFSRSDHLKTHTRTHTG-- 91
Query: 246 PMDRPYHCDL--CPKDFIDKGHLVSHRRSH 273
++P+ C C K F LV H H
Sbjct: 92 --EKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 63.7 bits (156), Expect = 7e-13
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 36/121 (29%)
Query: 158 TGESPHSCE--FCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPR 215
+ + P C C++ + + HL+ H R+H T +K
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKH-----------T---GEK------------ 35
Query: 216 DCPYVCT--DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSH 273
PY C DC + F L HQR H +P+ C C + F HL +H R+H
Sbjct: 36 --PYQCDFKDCERRFSRSDQLKRHQRRHTG----VKPFQCKTCQRKFSRSDHLKTHTRTH 89
Query: 274 T 274
T
Sbjct: 90 T 90
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 125 bits (316), Expect = 8e-36
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
+G+ + C C K+FT K H+ H G P+ C C K F K H+V H + HTG
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI 63
Query: 105 TPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTN 152
P+ C C K F +D H + ++ ++ T ++
Sbjct: 64 KPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 117 bits (296), Expect = 5e-33
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 71 RQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHT 130
+G+ + C C KSFT K H H G P+ C C K F K HLV H++ HT
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 131 GESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHL 178
G P++C C K F ++ H + + ++ T
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 110 bits (277), Expect = 4e-30
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHT 74
D + C CGK F+ K H+ H G P+ C C K F K HLV H++ HT
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 75 GESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVN 124
G P+ CN CAK F +D H + + + T +
Sbjct: 62 GIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 107 bits (269), Expect = 5e-29
Identities = 30/137 (21%), Positives = 43/137 (31%), Gaps = 31/137 (22%)
Query: 98 ERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQH 157
+G+ +PCQ C K+FT K H+ H G P+ C C K F K HL H++ H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 158 TGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDC 217
TG P+ C C + F ++ H
Sbjct: 61 TGIKPYECNICAKRFMWRDSF------------------------------HRHVTSCTK 90
Query: 218 PYVCTDCGKAFRLKGNL 234
Y +
Sbjct: 91 SYEAAKAEQNTTEASGP 107
Score = 87.1 bits (217), Expect = 2e-21
Identities = 29/142 (20%), Positives = 44/142 (30%), Gaps = 35/142 (24%)
Query: 127 RRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHL 186
+G+ + C C KSFT K H+ H G P+ C C + F K HL H++
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK--- 58
Query: 187 PGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
H PY C C K F + + H+
Sbjct: 59 -------------------------IHTGIKPYECNICAKRFMWRDSF--HRHVTSC--- 88
Query: 247 MDRPYHCDLCPKDFIDKGHLVS 268
+ Y ++ + S
Sbjct: 89 -TKSYEAAKAEQNTTEASGPSS 109
Score = 77.1 bits (191), Expect = 8e-18
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
H+ P+ C +CGK F K H H+ HTG P+ C+ CAK F ++ H
Sbjct: 29 MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVT 86
Query: 74 TGESPHHCNYCAKSFTRKDH 93
+ + ++ T
Sbjct: 87 SCTKSYEAAKAEQNTTEASG 106
Score = 69.0 bits (170), Expect = 6e-15
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 35/120 (29%)
Query: 155 RQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHP 214
+G+ + C+ C ++FT K RH+ HL +
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHL--------------GLR----------- 36
Query: 215 RDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
PY C CGK F++K +L+ H + H +PY C++C K F+ + HR +
Sbjct: 37 ---PYGCGVCGKKFKMKHHLVGHMKIHTG----IKPYECNICAKRFMWRDSF--HRHVTS 87
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 122 bits (308), Expect = 1e-34
Identities = 33/101 (32%), Positives = 46/101 (45%)
Query: 65 HLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVN 124
+ C +C + FT+ +++ HER HT E P+ C C KAF R+DHL +
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
H H+ E P KC C K F + L H H S +
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 117 bits (295), Expect = 9e-33
Identities = 32/94 (34%), Positives = 45/94 (47%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
+ C +C + FT+ +L+ H R HT E P+ C+ C K+F R+DH+ H H+ E
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
Query: 105 TPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
PF CQ C K F + L H H S
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 104 bits (262), Expect = 5e-28
Identities = 29/93 (31%), Positives = 45/93 (48%)
Query: 93 HMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTN 152
+ F C++C + FT+ +L+ H R HT E P+ C C K+F R++HL +
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
H H+ E P C+ C + F + L H H
Sbjct: 64 HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 100 bits (251), Expect = 2e-26
Identities = 30/96 (31%), Positives = 44/96 (45%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
R T F C CG++F++ + H HT E P+ CD C K F R++HL +H H
Sbjct: 9 RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ E P C C K F + + H+ H +
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 91.0 bits (227), Expect = 5e-23
Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 32/133 (24%)
Query: 121 HLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKR 180
+ C +C + FT+ +L H R HT E P++C+ C + F R++HL+
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRD 63
Query: 181 HLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRS 240
H H ++ P+ C +CGK F L H+
Sbjct: 64 HRY----------------------------IHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
Query: 241 HQKGMPMDRPYHC 253
H +
Sbjct: 96 HMQ----TSSPTA 104
Score = 80.2 bits (199), Expect = 6e-19
Identities = 30/126 (23%), Positives = 44/126 (34%), Gaps = 32/126 (25%)
Query: 149 HLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLE 208
+ + C+FC R FT+ +L H R
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHER------------------------- 38
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVS 268
+H + PY C C KAFR + +L H+ H K ++P+ C C K F L
Sbjct: 39 ---THTDERPYTCDICHKAFRRQDHLRDHRYIHSK----EKPFKCQECGKGFCQSRTLAV 91
Query: 269 HRRSHT 274
H+ H
Sbjct: 92 HKTLHM 97
Score = 64.0 bits (157), Expect = 4e-13
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 203 KASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFID 262
+ ++C CG+ F NL+ H+R+H +RPY CD+C K F
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTD----ERPYTCDICHKAFRR 57
Query: 263 KGHLVSHRRSHT 274
+ HL HR H+
Sbjct: 58 QDHLRDHRYIHS 69
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 119 bits (300), Expect = 1e-33
Identities = 35/93 (37%), Positives = 46/93 (49%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
PH+C+ C K F+RK+ L H+R HTG P+ C C + + H R H+ E
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 105 TPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
PF CQ CP A L H+R HTG+S
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 118 bits (298), Expect = 2e-33
Identities = 36/93 (38%), Positives = 45/93 (48%)
Query: 73 HTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGE 132
PH C C K F+RKD + H R HTG P+ C+ C A L H+R H+ E
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 133 SPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
P KC C + LT H+R HTG+S S
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 104 bits (262), Expect = 4e-28
Identities = 31/85 (36%), Positives = 39/85 (45%)
Query: 101 HTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGE 160
P C+ C K F+RKD L H+R HTG P+KC C + L H+R H+ E
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 161 SPHSCEFCDRTFTRKEHLKRHLRQH 185
P C+ C L HLR H
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSH 87
Score = 99.4 bits (249), Expect = 3e-26
Identities = 31/88 (35%), Positives = 42/88 (47%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHC 81
P C++CGK FSRKD K H+ HTG P++C C L H+R H+ E P C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 82 NYCAKSFTRKDHMVYHERQHTGETPFPC 109
C + + H R HTG++
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 88.3 bits (220), Expect = 5e-22
Identities = 35/125 (28%), Positives = 46/125 (36%), Gaps = 32/125 (25%)
Query: 129 HTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPG 188
PHKC C K F+RK+ L H+R HTG P+ C+ CD L +HLR H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH--- 59
Query: 189 SEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMD 248
++ ++ P+ C C A R L H RSH D
Sbjct: 60 --------SD---ER--------------PFKCQICPYASRNSSQLTVHLRSHTG----D 90
Query: 249 RPYHC 253
Sbjct: 91 SGPSS 95
Score = 75.5 bits (187), Expect = 2e-17
Identities = 34/118 (28%), Positives = 43/118 (36%), Gaps = 32/118 (27%)
Query: 157 HTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRD 216
PH CE C + F+RK+ LK H+R H K
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHT--------------GVK------------- 35
Query: 217 CPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
PY C C A +L H R H +RP+ C +CP + L H RSHT
Sbjct: 36 -PYKCKTCDYAAADSSSLNKHLRIHSD----ERPFKCQICPYASRNSSQLTVHLRSHT 88
Score = 69.4 bits (171), Expect = 4e-15
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 9 TIHAERRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVN 68
H R H P+ C C + H+ H+ E P +C C L
Sbjct: 25 KTH--MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV 82
Query: 69 HVRQHTGESPHHC 81
H+R HTG+S
Sbjct: 83 HLRSHTGDSGPSS 95
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 114 bits (287), Expect = 2e-31
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 22 PFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPH 79
C C K F + H+ H G H C C K F L H HTGE P
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 63
Query: 80 HCNY--CAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRHTGESPH 135
C + C K F+ ++ H R HTG+ P+ C + C K F + +L +H+ H +
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Query: 136 K 136
+
Sbjct: 124 Q 124
Score = 108 bits (272), Expect = 3e-29
Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 76 ESPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
C + C K F M H H G C C KAF L H HTGE
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 134 PHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEF--CDRTFTRKEHLKRHLRQH 185
P +CT+ C K F+ +L H+R HTG+ P+ C F C++ F + +LK H+ H
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 92.6 bits (231), Expect = 2e-23
Identities = 39/144 (27%), Positives = 49/144 (34%), Gaps = 35/144 (24%)
Query: 104 ETPFPCQY--CPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
C + C K F + H+ H G H C C K+F L H HTGE
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 162 PHSCEF--CDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPY 219
P C F C + F+ +L+ H+R H D PY
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVR----------------------------IHTGDRPY 93
Query: 220 VC--TDCGKAFRLKGNLMFHQRSH 241
VC C K F NL H +H
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTH 117
Score = 82.2 bits (204), Expect = 2e-19
Identities = 41/149 (27%), Positives = 49/149 (32%), Gaps = 39/149 (26%)
Query: 132 ESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGS 189
C + C K F + H+ H G H C C + F LKRH
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL------ 55
Query: 190 EFNCIICTEPFNDKASLLEHLRSHPRDCPYVCT--DCGKAFRLKGNLMFHQRSHQKGMPM 247
H + P+ CT CGK F L NL H R H
Sbjct: 56 ----------------------VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG---- 89
Query: 248 DRPYHCDL--CPKDFIDKGHLVSHRRSHT 274
DRPY C C K F +L SH +H
Sbjct: 90 DRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 108 bits (272), Expect = 1e-29
Identities = 37/91 (40%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
+G + C+ C K F HL H H+GE P+ C C F RKD M YH R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 105 T--PFPCQYCPKAFTRKDHLVNHVRR-HTGE 132
P+ CQ C K F+R DHL H+++ H+G
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 107 bits (270), Expect = 2e-29
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 73 HTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGE 132
+G S C C K F H+ H+ H+GE P+ C C F RKD + HVR H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 133 S--PHKCTYCMKSFTRKEHLTNHIRQ-HTGE 160
P+ C C K F+R +HL HI+Q H+G
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 97.9 bits (245), Expect = 9e-26
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 101 HTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGE 160
+G + C+ C K F HL H H+GE P+ C C F RK+ ++ H+R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 161 S--PHSCEFCDRTFTRKEHLKRHLRQ 184
P+ C+ C + F+R +HL H++Q
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 90.6 bits (226), Expect = 5e-23
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGES--PH 79
C+ICGK F H H + H+GE P+ C C F RK+ + HVR H G P+
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 80 HCNYCAKSFTRKDHMVYHERQ-HTGE 104
C C K F+R DH+ H +Q H+G
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 82.2 bits (204), Expect = 9e-20
Identities = 33/114 (28%), Positives = 44/114 (38%), Gaps = 27/114 (23%)
Query: 129 HTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPG 188
+G S C C K F HL H H+GE P+SC C F RK+ + H+R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH-DG 60
Query: 189 SEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFH-QRSH 241
+ PY+C CGK F +L H ++ H
Sbjct: 61 -------------------SVGK------PYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 69.1 bits (170), Expect = 5e-15
Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 31/119 (26%)
Query: 157 HTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRD 216
+G S +CE C + F HL RH SH +
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKL----------------------------SHSGE 33
Query: 217 CPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSH-RRSHT 274
PY C CG F+ K + +H RSH + +PY C C K F HL H ++ H+
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSHDG--SVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 104 bits (261), Expect = 5e-28
Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 87 SFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSF 144
S + R H + P C K +T+ HL H+R HTGE P+KCT+ C F
Sbjct: 2 SSGSSGPDLEKRRIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 145 TRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
R + LT H R+HTG P C C+R+F+R +HL H+++H
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 99.6 bits (249), Expect = 3e-26
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 59 TFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC--QYCPKAF 116
+ + R H + P C K +T+ H+ H R HTGE P+ C + C F
Sbjct: 2 SSGSSGPDLEKRRIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRF 57
Query: 117 TRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 158
R D L H R+HTG P +C C +SF+R +HL H+++H
Sbjct: 58 ARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 99.2 bits (248), Expect = 4e-26
Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 32 FSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFT 89
H + P C K +T+ HL H+R HTGE P+ C + C F
Sbjct: 3 SGSSGPDLEKRRIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Query: 90 RKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHT 130
R D + H R+HTG PF C C ++F+R DHL H++RH
Sbjct: 59 RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 85.4 bits (212), Expect = 6e-21
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 22 PFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGES 77
+CD C K +++ H K H+ HTGE P++C + C F R + L H R+HTG
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHT 102
P C C +SF+R DH+ H ++H
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 66.5 bits (163), Expect = 4e-14
Identities = 32/135 (23%), Positives = 43/135 (31%), Gaps = 38/135 (28%)
Query: 143 SFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFND 202
S R H + P C + +T+ HLK HLR
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLR------------------- 38
Query: 203 KASLLEHLRSHPRDCPYVCT--DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDF 260
+H + PY CT C F L H R H +P+ C +C + F
Sbjct: 39 ---------THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG----AKPFQCGVCNRSF 85
Query: 261 IDKGHLVSHRRSHTN 275
HL H + H N
Sbjct: 86 SRSDHLALHMKRHQN 100
Score = 61.1 bits (149), Expect = 3e-12
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 14 RRSHITDSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVR 71
R+H + P+ C C F+R D H HTG P +C C ++F+R +HL H++
Sbjct: 37 LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Query: 72 QHT 74
+H
Sbjct: 97 RHQ 99
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 101 bits (255), Expect = 3e-27
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 100 QHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQH 157
+ T C K +T+ HL H+R HTGE P+ C + C F R + LT H R+H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 158 TGESPHSCEFCDRTFTRKEHLKRHLRQHL 186
TG P C+ CDR F+R +HL H+++H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 101 bits (255), Expect = 4e-27
Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHT 102
T C KT+T+ HL H+R HTGE P+HC++ C F R D + H R+HT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 103 GETPFPCQYCPKAFTRKDHLVNHVRRH 129
G PF CQ C +AF+R DHL H++RH
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 99 bits (250), Expect = 2e-26
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 72 QHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRH 129
+ T C K++T+ H+ H R HTGE P+ C + C F R D L H R+H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQH 157
TG P +C C ++F+R +HL H+++H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 88.0 bits (219), Expect = 5e-22
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPH 79
CGK +++ H K H+ HTGE P+ CD+ C F R + L H R+HTG P
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 80 HCNYCAKSFTRKDHMVYHERQH 101
C C ++F+R DH+ H ++H
Sbjct: 67 QCQKCDRAFSRSDHLALHMKRH 88
Score = 74.9 bits (185), Expect = 3e-17
Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 30/116 (25%)
Query: 128 RHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC--EFCDRTFTRKEHLKRHLRQH 185
+ T C K++T+ HL H+R HTGE P+ C + C F R + L RH R
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-- 58
Query: 186 LPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
H P+ C C +AF +L H + H
Sbjct: 59 --------------------------KHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 59.9 bits (146), Expect = 8e-12
Identities = 30/120 (25%), Positives = 39/120 (32%), Gaps = 34/120 (28%)
Query: 156 QHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPR 215
+ T C +T+T+ HLK HLR +H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLR----------------------------THTG 32
Query: 216 DCPYVCT--DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSH 273
+ PY C CG F L H R H RP+ C C + F HL H + H
Sbjct: 33 EKPYHCDWDGCGWKFARSDELTRHYRKHTG----HRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 57.5 bits (140), Expect = 5e-11
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 11 HAERRSHITDSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVN 68
A R+H + P+HCD CG F+R D H HTG P +C C + F+R +HL
Sbjct: 24 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL 83
Query: 69 HVRQH 73
H+++H
Sbjct: 84 HMKRH 88
Score = 45.6 bits (109), Expect = 8e-07
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 213 HPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDL--CPKDFIDKGHLVSHR 270
CGK + +L H R+H ++PYHCD C F L H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTG----EKPYHCDWDGCGWKFARSDELTRHY 57
Query: 271 RSHT 274
R HT
Sbjct: 58 RKHT 61
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 101 bits (254), Expect = 5e-27
Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 104 ETPFPCQY--CPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
E P+ C C + F++ L H+R HTG+ P +C CM++F+R +HLT HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQH 185
P +C+ C R F R + KRH + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 99.8 bits (250), Expect = 2e-26
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 76 ESPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
E P+ C C + F++ + H R HTG+ PF C+ C + F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGE 160
P C C + F R + H + H +
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 98.3 bits (246), Expect = 7e-26
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 48 ETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
E P+ C C + F++ L H+R HTG+ P C C ++F+R DH+ H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGE 132
PF C C + F R D H + H +
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 95.2 bits (238), Expect = 9e-25
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 22 PFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPH 79
P+ C + C + FS+ H+ HTG+ P +C C + F+R +HL H+R HTGE P
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 80 HCNYCAKSFTRKDHMVYHERQHTGE 104
C+ C + F R D H + H +
Sbjct: 64 ACDICGRKFARSDERKRHTKIHLRQ 88
Score = 63.6 bits (156), Expect = 3e-13
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDL 255
C F+ SL H+R H P+ C C + F +L H R+H ++P+ CD+
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG----EKPFACDI 67
Query: 256 CPKDFIDKGHLVSHRRSHT 274
C + F H + H
Sbjct: 68 CGRKFARSDERKRHTKIHL 86
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 98.3 bits (246), Expect = 6e-26
Identities = 35/79 (44%), Positives = 45/79 (56%)
Query: 81 CNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYC 140
C C KSF R + H H+ P+PCQYC K F +K + H HTGE PHKC C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 141 MKSFTRKEHLTNHIRQHTG 159
K+F++ +L H R+HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 95.2 bits (238), Expect = 7e-25
Identities = 34/79 (43%), Positives = 44/79 (55%)
Query: 53 CDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYC 112
C C K+F R L H+ H+ P+ C YC K F +K M H HTGE P CQ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 113 PKAFTRKDHLVNHVRRHTG 131
KAF++ +L+ H R+HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 89.8 bits (224), Expect = 8e-23
Identities = 33/81 (40%), Positives = 46/81 (56%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
F C ICGK F R H++ H+ P+ C YC K F +K + H HTGE PH C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 83 YCAKSFTRKDHMVYHERQHTG 103
C K+F++ +++ H R+HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 88.2 bits (220), Expect = 3e-22
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 109 CQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFC 168
C+ C K+F R L H+ H+ P+ C YC K F +K + H HTGE PH C+ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 169 DRTFTRKEHLKRHLRQH 185
+ F++ +L H R+H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 71.3 bits (176), Expect = 5e-16
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 28/106 (26%)
Query: 136 KCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCII 195
C C KSF R L+ H+ H+ P+ C++C + F +K +K+H H
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT--------- 53
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
+K P+ C CGKAF NL+ H R H
Sbjct: 54 -----GEK--------------PHKCQVCGKAFSQSSNLITHSRKH 80
Score = 66.7 bits (164), Expect = 2e-14
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 191 FNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRP 250
F+C IC + F ++L HL H PY C CGK F K ++ H H ++P
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG----EKP 57
Query: 251 YHCDLCPKDFIDKGHLVSHRRSHT 274
+ C +C K F +L++H R HT
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKHT 81
Score = 60.9 bits (149), Expect = 3e-12
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
H P+ C CGK F +K K H HTGE PH+C C K F++ +L+ H R+H
Sbjct: 21 LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Query: 74 TG 75
TG
Sbjct: 81 TG 82
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 96.8 bits (242), Expect = 2e-25
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 65 HLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET----PFPCQYCPKAFTRKD 120
+ R HTGE P+ C++C K+F +K + H +++ F C C K FTR++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 121 HLVNHVRRHTGESPHKCTYCMKSF 144
+ H G + S
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 94.5 bits (236), Expect = 2e-24
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 93 HMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES----PHKCTYCMKSFTRKE 148
R HTGE P+ C +C K F +K L H +R+ + C+ C K+FTR+
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 149 HLTNHIRQHTGESPHSCEFCDRTF 172
+ H G E +
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 77.6 bits (192), Expect = 3e-18
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 32/112 (28%)
Query: 121 HLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGES----PHSCEFCDRTFTRKE 176
+ R HTGE P+ C++C K+F +K+ L H +++ + C C +TFTR+
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 177 HLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAF 228
+ RH C P + G +
Sbjct: 62 TMARHAD-----------NCAGP---D--------------GVEGENSGPSS 85
Score = 75.3 bits (186), Expect = 2e-17
Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGET----PHRCDYCAKTFTRKEHLVNHV 70
R+H + P+ C C K F +K H + C C KTFTR+ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 71 RQHTGESPHHCNYCAKSF 88
G S
Sbjct: 68 DNCAGPDGVEGENSGPSS 85
Score = 71.8 bits (177), Expect = 4e-16
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 28/112 (25%)
Query: 149 HLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLE 208
+ R HTGE P++C CD+TF +K+ L H +++ F
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY----------HDPNFVPA----- 46
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDF 260
+VC+ CGK F + + H + +
Sbjct: 47 ---------AFVCSKCGKTFTRRNTMARHADNCAG----PDGVEGENSGPSS 85
Score = 69.9 bits (172), Expect = 2e-15
Identities = 18/70 (25%), Positives = 28/70 (40%)
Query: 205 SLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKG 264
S R+H + PY C+ C K FR K L H + + + + C C K F +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 265 HLVSHRRSHT 274
+ H +
Sbjct: 62 TMARHADNCA 71
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 232 GNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
G+ R+H ++PY C C K F K L H + +
Sbjct: 1 GSSGSSGRTHTG----EKPYACSHCDKTFRQKQLLDMHFKRYH 39
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 94.1 bits (235), Expect = 3e-24
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
P C C ++F+R DH+ H R HTGE PF C C + F R D H P
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILE 61
Query: 138 TYCMKSFTRKEHLTNHI---RQHTGE 160
+ ++ HL N + ++ GE
Sbjct: 62 DKVEELLSKNYHLENEVARLKKLVGE 87
Score = 89.1 bits (222), Expect = 2e-22
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHC 81
PF C IC + FSR DH H+ HTGE P CD C + F R + H P
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILE 61
Query: 82 NYCAKSFTRKDHM---VYHERQHTGE 104
+ + ++ H+ V ++ GE
Sbjct: 62 DKVEELLSKNYHLENEVARLKKLVGE 87
Score = 88.7 bits (221), Expect = 3e-22
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
PF C+ C + F+R DHL H+R HTGE P C C + F R + H P
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILE 61
Query: 166 EFCDRTFTRKEHLKRH 181
+ + ++ HL+
Sbjct: 62 DKVEELLSKNYHLENE 77
Score = 79.8 bits (198), Expect = 5e-19
Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 32/111 (28%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNC 193
P +C CM++F+R +HLT HIR HTGE P +C+ C R F R + KRH
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-------- 54
Query: 194 IICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNL---MFHQRSH 241
P + + +L + +
Sbjct: 55 ---HIL------------------PILEDKVEELLSKNYHLENEVARLKKL 84
Score = 60.6 bits (148), Expect = 4e-12
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 8/87 (9%)
Query: 191 FNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRP 250
F C IC F+ L H+R+H + P+ C CG+ F H+ P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-----HILP 58
Query: 251 YHCDLCPKDFIDKGHLVSHR---RSHT 274
D + HL + +
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLV 85
Score = 56.4 bits (137), Expect = 1e-10
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
P+ C C + F +L H R+H ++P+ CD+C + F HR
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTG----EKPFACDICGRKFARSDERKRHRDIQH 55
Score = 35.5 bits (83), Expect = 0.003
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 4/38 (10%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMW---HTGE 48
R P D + S+ H +N V GE
Sbjct: 51 RDIQ-HILPILEDKVEELLSKNYHLENEVARLKKLVGE 87
Score = 33.6 bits (78), Expect = 0.012
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHT 274
+P+ C +C ++F HL +H R+HT
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHT 27
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 87.9 bits (219), Expect = 3e-22
Identities = 26/72 (36%), Positives = 34/72 (47%)
Query: 65 HLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVN 124
Q + C+ C KSF+ + H R HTGE P+ C C KAF ++ HL+
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 125 HVRRHTGESPHK 136
H R HTG P
Sbjct: 65 HHRVHTGSGPSS 76
Score = 86.7 bits (216), Expect = 9e-22
Identities = 27/71 (38%), Positives = 34/71 (47%)
Query: 93 HMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTN 152
E Q + C C K+F+ L H R HTGE P+KC C K+F ++ HL
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 153 HIRQHTGESPH 163
H R HTG P
Sbjct: 65 HHRVHTGSGPS 75
Score = 79.8 bits (198), Expect = 3e-19
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
++CD C K+F+ L H R HTGE P+ C+ C K+F ++ H++ H R HTG
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS 72
Query: 105 TPF 107
P
Sbjct: 73 GPS 75
Score = 74.8 bits (185), Expect = 2e-17
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 121 HLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKR 180
+ +KC C KSF+ L+ H R HTGE P+ C+ C + F ++ HL
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 181 HLRQH 185
H R H
Sbjct: 65 HHRVH 69
Score = 65.9 bits (162), Expect = 4e-14
Identities = 26/66 (39%), Positives = 32/66 (48%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
+ CD CGK FS H HTGE P++CD C K F ++ HL+ H R H
Sbjct: 10 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Query: 74 TGESPH 79
TG P
Sbjct: 70 TGSGPS 75
Score = 62.8 bits (154), Expect = 5e-13
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 203 KASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFID 262
S Y C +CGK+F +L H+R+H ++PY CD C K FI
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG----EKPYKCDECGKAFIQ 58
Query: 263 KGHLVSHRRSHT 274
+ HL+ H R HT
Sbjct: 59 RSHLIGHHRVHT 70
Score = 56.3 bits (137), Expect = 1e-10
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 28/93 (30%)
Query: 149 HLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLE 208
Q + C+ C ++F+ L +H R H +K
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT--------------GEK----- 45
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
PY C +CGKAF + +L+ H R H
Sbjct: 46 ---------PYKCDECGKAFIQRSHLIGHHRVH 69
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 87.6 bits (218), Expect = 5e-22
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 65 HLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET--PFPCQYCPKAFTRKDHL 122
+ R H+GE P+ C C FT+ M H Q E F C +C RK L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 123 VNHVRR-HTGESPH 135
H+R+ H+ P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 86.8 bits (216), Expect = 8e-22
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 93 HMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES--PHKCTYCMKSFTRKEHL 150
R H+GE P+ C C FT+ + H+ + E+ C +C RK L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 151 TNHIR-QHTGESPHS 164
H+R QH+ P S
Sbjct: 62 GVHLRKQHSYSGPSS 76
Score = 84.5 bits (210), Expect = 8e-21
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 121 HLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGES--PHSCEFCDRTFTRKEHL 178
+ R H+GE P++C C FT+ + HI Q E+ C CD RK L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 179 KRHLRQH 185
HLR+
Sbjct: 62 GVHLRKQ 68
Score = 79.9 bits (198), Expect = 3e-19
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 37 HYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGES--PHHCNYCAKSFTRKDHM 94
+ H+GE P+ C C FT+ + H+ Q E+ HC +C RK +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 95 VYHER-QHTGETPF 107
H R QH+ P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 69.5 bits (171), Expect = 2e-15
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGET--PHRCDYCAKTFTRKEHLVNHVR 71
R+H + P+ C IC F++ K H++ E C +C RK L H+R
Sbjct: 7 GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Query: 72 -QHTGESPH 79
QH+ P
Sbjct: 67 KQHSYSGPS 75
Score = 60.2 bits (147), Expect = 4e-12
Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 205 SLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKG 264
S R+H + PY C C F G + H +HC C K
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENV--AKFHCPHCDTVIARKS 59
Query: 265 HLVSH-RRSHT 274
L H R+ H+
Sbjct: 60 DLGVHLRKQHS 70
Score = 57.1 bits (139), Expect = 5e-11
Identities = 18/105 (17%), Positives = 27/105 (25%), Gaps = 33/105 (31%)
Query: 149 HLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLE 208
+ R H+GE P+ C C FT+ +K
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKM---------------------------- 33
Query: 209 HLRSHPRDC--PYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPY 251
H+ + + C C K +L H R P
Sbjct: 34 HILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY---SGPS 75
Score = 38.7 bits (91), Expect = 2e-04
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 232 GNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
G+ R+H ++PY C +C F G + H
Sbjct: 1 GSSGSSGRTHSG----EKPYECYICHARFTQSGTMKMHILQKH 39
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 86.0 bits (214), Expect = 2e-21
Identities = 30/67 (44%), Positives = 37/67 (55%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQ 156
H+GE P+ C C KAF+R LV H R HTGE P+KC C K+F++ L NH R
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Query: 157 HTGESPH 163
HT
Sbjct: 65 HTSGPSS 71
Score = 84.4 bits (210), Expect = 6e-21
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 66 LVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNH 125
H+GE P+ C C K+F+R +V H+R HTGE P+ C C KAF++ L+NH
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 126 VRRHTGESPH 135
R HT
Sbjct: 62 QRIHTSGPSS 71
Score = 79.8 bits (198), Expect = 3e-19
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
H+GE P+ C C K F+R LV H R HTGE P+ C C K+F++ ++ H+R HT
Sbjct: 9 HSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Query: 105 TPF 107
Sbjct: 69 PSS 71
Score = 72.9 bits (180), Expect = 1e-16
Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 122 LVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRH 181
H+GE P+ C C K+F+R L H R HTGE P+ C C + F++ L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 182 LRQH 185
R H
Sbjct: 62 QRIH 65
Score = 66.3 bits (163), Expect = 2e-14
Identities = 25/66 (37%), Positives = 32/66 (48%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
H + P+ C CGK FSR H HTGE P++C C K F++ L+NH R H
Sbjct: 6 SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Query: 74 TGESPH 79
T
Sbjct: 66 TSGPSS 71
Score = 61.7 bits (151), Expect = 1e-12
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 206 LLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGH 265
H + PY C +CGKAF L+ HQR H ++PY C C K F
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTG----EKPYKCLECGKAFSQNSG 57
Query: 266 LVSHRRSHT 274
L++H+R HT
Sbjct: 58 LINHQRIHT 66
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 85.7 bits (213), Expect = 3e-21
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 101 HTGETPFPCQY--CPKAFTRKDHLVNHVR-RHTGESPHKCTY--CMKSFTRKEHLTNHIR 155
+G + PC + C + F+ + +L +H + +H + C C KSF K+HL H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 156 QHTGESPHSCEFCDRTF 172
H+ + CEF +
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 83.8 bits (208), Expect = 1e-20
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 73 HTGESPHHCNY--CAKSFTRKDHMVYHER-QHTGETPFPCQY--CPKAFTRKDHLVNHVR 127
+G S C++ C + F+ + ++ +H++ QH + F C C K+F K HL H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 128 RHTGESPHKCTYCMKSF 144
H+ + C + S
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 83.0 bits (206), Expect = 2e-20
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 45 HTGETPHRCDY--CAKTFTRKEHLVNHVR-QHTGESPHHCNY--CAKSFTRKDHMVYHER 99
+G + CD+ C + F+ +++L +H + QH + C C KSF K H+ H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 100 QHTGETPFPCQYCPKAF 116
H+ + C++ +
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 73.7 bits (182), Expect = 7e-17
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 22 PFHCDI--CGKYFSRKDHYKNHV-MWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGE 76
CD CG+ FS + + +H H + C C K+F K+HL H++ H+
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66
Query: 77 SPHHCNYCAKSF 88
+ C + S
Sbjct: 67 RDYICEFSGPSS 78
Score = 56.0 bits (136), Expect = 1e-10
Identities = 24/135 (17%), Positives = 38/135 (28%), Gaps = 61/135 (45%)
Query: 129 HTGESPHKCTY--CMKSFTRKEHLTNHIR-QHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+G S C + C + F+ +++L +H + QH + S
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS--------------------- 40
Query: 186 LPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGM 245
C EP CGK+F K +L H + H
Sbjct: 41 ----------CPEP-----------------------ACGKSFNFKKHLKEHMKLHSD-- 65
Query: 246 PMDRPYHCDLCPKDF 260
R Y C+
Sbjct: 66 --TRDYICEFSGPSS 78
Score = 48.7 bits (117), Expect = 5e-08
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 218 PYVCT--DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCD--LCPKDFIDKGHLVSHRRSH 273
C CG+ F + L H++ + + C C K F K HL H + H
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIH---QKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 274 T 274
+
Sbjct: 64 S 64
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 85.2 bits (212), Expect = 3e-21
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 93 HMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTN 152
H +H + P+ C C +F K +L +H HTGE P++C C F R +L
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 153 HIRQHTGESPH 163
H R H+GE P+
Sbjct: 64 HTRIHSGEKPY 74
Score = 83.7 bits (208), Expect = 1e-20
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 65 HLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVN 124
H +H + P+ C+ C SF K ++ H+ HTGE P+ C C F R +L
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 125 HVRRHTGESPH 135
H R H+GE P+
Sbjct: 64 HTRIHSGEKPY 74
Score = 79.0 bits (196), Expect = 7e-19
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 37 HYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVY 96
H+ +H + P++CD C +F K +L +H HTGE P+ CN C F R ++
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 97 HERQHTGETPF 107
H R H+GE P+
Sbjct: 64 HTRIHSGEKPY 74
Score = 78.6 bits (195), Expect = 8e-19
Identities = 25/65 (38%), Positives = 32/65 (49%)
Query: 121 HLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKR 180
H +H + P+KC C SF K +L +H HTGE P+ C C F R +LK
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 181 HLRQH 185
H R H
Sbjct: 64 HTRIH 68
Score = 65.6 bits (161), Expect = 4e-14
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHT 74
+D P+ CD C F K + +H HTGE P+RC+ C F R +L H R H+
Sbjct: 10 HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Query: 75 GESPH 79
GE P+
Sbjct: 70 GEKPY 74
Score = 60.9 bits (149), Expect = 2e-12
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 205 SLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKG 264
H D PY C C +FR KGNL H+ H ++PY C++C F
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTG----EKPYRCNICGAQFNRPA 59
Query: 265 HLVSHRRSHT 274
+L +H R H+
Sbjct: 60 NLKTHTRIHS 69
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 83.3 bits (207), Expect = 2e-20
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 99 RQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 158
+ P C C + + K L H R H + P KC YC + +L+ H+++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 159 GE 160
G+
Sbjct: 62 GD 63
Score = 80.2 bits (199), Expect = 2e-19
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
+ P +C C+ + + K L H R H + P CNYC+ + ++ H ++ G+
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Query: 105 TPFPC 109
P
Sbjct: 64 MSGPS 68
Score = 78.3 bits (194), Expect = 9e-19
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 71 RQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHT 130
+ P C+ C+ S + K + HER H + PF C YC + +L H+++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 131 GE 132
G+
Sbjct: 62 GD 63
Score = 77.9 bits (193), Expect = 2e-18
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 127 RRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ P KC+ C S + K L H R H + P C +C + +L +H+++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 67.9 bits (167), Expect = 6e-15
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHT 74
S + P C C S K + H H + P +C+YC+ + +L H+++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 75 GE 76
G+
Sbjct: 62 GD 63
Score = 59.4 bits (145), Expect = 7e-12
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 211 RSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHR 270
S P C++C + K L H+R H DRP+ C+ C D +L H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCT----DRPFKCNYCSFDTKQPSNLSKHM 57
Query: 271 RSHT 274
+
Sbjct: 58 KKFH 61
Score = 54.0 bits (131), Expect = 5e-10
Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 28/87 (32%)
Query: 155 RQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHP 214
+ P C C + + K L+ H R H CT+
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIH----------CTDR--------------- 36
Query: 215 RDCPYVCTDCGKAFRLKGNLMFHQRSH 241
P+ C C + NL H +
Sbjct: 37 ---PFKCNYCSFDTKQPSNLSKHMKKF 60
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 78.0 bits (193), Expect = 2e-18
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 79 HHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRHTGESP 134
+ C++ C K+F + + + H+ HT + P+ C + C K F+ L H + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 135 HKCTYCMKSFTRKEHLTNHIR 155
K C H+
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVA 82
Score = 74.2 bits (183), Expect = 4e-17
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 108 PCQYCPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSC 165
+ C KAF + + L H HT + P++C + C K F+ L H + H G
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 166 EFCDRTFTRK-EHLKRHLRQH 185
+ C +LK H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
Score = 65.3 bits (160), Expect = 7e-14
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 24 HCDICGKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHC 81
H + CGK F + + K H HT + P+ C + C K F+ L H + H G
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 82 NYCAKSFTRK-DHMVYHERQH 101
+ C+ ++ + H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
Score = 56.1 bits (136), Expect = 2e-10
Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 32/109 (29%)
Query: 135 HKCTY--CMKSFTRKEHLTNHIRQHTGESPHSC--EFCDRTFTRKEHLKRHLRQHLPGSE 190
+ C + C K+F + L H HT + P+ C E CD+ F+ LKRH +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK------- 54
Query: 191 FNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQR 239
H C + + H
Sbjct: 55 ---------------------VHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
Score = 46.1 bits (110), Expect = 5e-07
Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 15 RSHITDSPFHCD--ICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVR 71
SH P+ C C K FS K H H G + D C+ + HV
Sbjct: 24 FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
Score = 41.5 bits (98), Expect = 2e-05
Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 196 CTEPFNDKASLLEHLRSHPRDCPYVCT--DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
C + F L H SH + PY C C K F L L H++ H
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG----YPCKKD 64
Query: 254 DLCPKDFIDKGHLVSH-RRSH 273
D C + H H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
Score = 39.9 bits (94), Expect = 7e-05
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 219 YVCT--DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCD--LCPKDFIDKGHLVSHRRSHT 274
YVC +CGKAF+ L HQ SH + PY C C K F L H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQ----QLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 75.7 bits (187), Expect = 9e-18
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 98 ERQHTGETPFPCQYCPKAFTRKDHLVNHVR--RHTGESPHKCTYCMKSFTRKEHLTNHIR 155
E GE + C+ C + +T + H + C +C K FTRK+++T H++
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 156 QHTG 159
Sbjct: 62 IIHK 65
Score = 75.7 bits (187), Expect = 9e-18
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 127 RRHTGESPHKCTYCMKSFTRKEHLTNHIR--QHTGESPHSCEFCDRTFTRKEHLKRHLRQ 184
GE ++C C + +T + H + C FC + FTRK+++ H++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 185 H 185
Sbjct: 63 I 63
Score = 74.5 bits (184), Expect = 2e-17
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 71 RQHTGESPHHCNYCAKSFTRKDHMVYHER--QHTGETPFPCQYCPKAFTRKDHLVNHVRR 128
GE + C C++ +T + H +PC +C K FTRKD++ HV+
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 129 HTG 131
Sbjct: 63 IHK 65
Score = 62.2 bits (152), Expect = 5e-13
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVM--WHTGETPHRCDYCAKTFTRKEHLVNHVRQ 72
+ + + C +C + ++ ++ H + + C +C K FTRK+++ HV+
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 73 HTG 75
Sbjct: 63 IHK 65
Score = 58.7 bits (143), Expect = 9e-12
Identities = 17/89 (19%), Positives = 23/89 (25%), Gaps = 26/89 (29%)
Query: 155 RQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHP 214
GE + C+ C R +T + RH
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTS--------------------------HKR 36
Query: 215 RDCPYVCTDCGKAFRLKGNLMFHQRSHQK 243
Y C C K F K N+ H + K
Sbjct: 37 NVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 54.5 bits (132), Expect = 3e-10
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 211 RSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHR 270
+ + Y C C + + N H + K + Y C C K+F K ++ +H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKR--NVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 271 RSHT 274
+
Sbjct: 61 KIIH 64
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 75.1 bits (185), Expect = 2e-17
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 129 HTGESPHKCTYCMKSFTRKEHLTNHIRQHT---GESPHSCEFCDRTFTRKEHLKRHLRQH 185
+G S +C C + +K L H R+H CEFC + F + + + H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 186 LPGSEFNCIICTEP 199
P + P
Sbjct: 62 HPALLLAPQESSGP 75
Score = 75.1 bits (185), Expect = 2e-17
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHT---GESPHHCNYCAKSFTRKDHMVYHERQH 101
+G + +C+ C T +K L H R+H C +C K F + D + H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 102 TGETPFPCQYCPK 114
Q
Sbjct: 62 HPALLLAPQESSG 74
Score = 74.0 bits (182), Expect = 6e-17
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 101 HTGETPFPCQYCPKAFTRKDHLVNHVRRHT---GESPHKCTYCMKSFTRKEHLTNHIRQH 157
+G + C+ C +K L H R+H C +C K F + + + H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 158 TGESPHSCE 166
+ +
Sbjct: 62 HPALLLAPQ 70
Score = 63.6 bits (155), Expect = 3e-13
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHT---GETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
C+ICG +K H H C++C K F + + + H +
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 79 HHCNYCAK 86
+
Sbjct: 67 LAPQESSG 74
Score = 60.9 bits (148), Expect = 3e-12
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTNG 276
C CG R K +L +HQR H + C+ C K F + +HR
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKH-AETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Score = 51.6 bits (124), Expect = 5e-09
Identities = 17/88 (19%), Positives = 23/88 (26%), Gaps = 31/88 (35%)
Query: 157 HTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRD 216
+G S CE C T +K L H R H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNW----------------------------HQRKHAET 33
Query: 217 C---PYVCTDCGKAFRLKGNLMFHQRSH 241
+ C CGK F ++ H+
Sbjct: 34 VAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 35.1 bits (81), Expect = 0.004
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHTNGITNK 280
C++C K L H+R H +
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAAL 37
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 73.7 bits (182), Expect = 4e-17
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRR-HTGE 132
C C ++F R++H+ H R HT E P+PC C +AFTR+D L+ H ++ H+G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 72.9 bits (180), Expect = 7e-17
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHE-RQHTGET 105
C+ C + F R+EHL H R HT E P+ C C ++FTR+D ++ H + H+G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 71.4 bits (176), Expect = 3e-16
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHI-RQHTGE 160
F C+ C +AF R++HL H R HT E P+ C C ++FTR++ L H + H+G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 69.4 bits (171), Expect = 1e-15
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLR 183
C C ++F R+EHL H R HT E P+ C C+R FTR++ L RH +
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 64.4 bits (158), Expect = 7e-14
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHV-RQHTGE 76
F C++C + F+R++H K H HT E P+ C C + FTR++ L+ H + H+G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 54.4 bits (132), Expect = 3e-10
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSH-RRSHT 274
+VC C +AF + +L H RSH ++PY C LC + F + L+ H ++ H+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTN----EKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 46.3 bits (111), Expect = 3e-07
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 29/81 (35%)
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVC 221
CE C R F R+EHLKR H RSH + PY C
Sbjct: 2 SFVCEVCTRAFARQEHLKR----------------------------HYRSHTNEKPYPC 33
Query: 222 TDCGKAFRLKGNLMFH-QRSH 241
C +AF + L+ H Q+ H
Sbjct: 34 GLCNRAFTRRDLLIRHAQKIH 54
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHTN 275
R + C++C + F + HL H RSHTN
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 72.3 bits (178), Expect = 2e-16
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 116 FTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFT 173
++L+N+V P+ C C + F+R + LT HIR HTG+ P C C R F+
Sbjct: 3 PHPMNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 174 RKEHLKRHLRQH 185
R +HL H+R H
Sbjct: 61 RSDHLTTHIRTH 72
Score = 72.0 bits (177), Expect = 3e-16
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 60 FTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFT 117
+L+N+V P+ C C + F+R D + H R HTG+ PF C+ C + F+
Sbjct: 3 PHPMNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 118 RKDHLVNHVRRHT 130
R DHL H+R HT
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 70.8 bits (174), Expect = 6e-16
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 97 HERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHI 154
P+ C C + F+R D L H+R HTG+ P +C CM++F+R +HLT HI
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Query: 155 RQHT 158
R HT
Sbjct: 70 RTHT 73
Score = 66.6 bits (163), Expect = 2e-14
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 32 FSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFT 89
++ N+V P+ C C + F+R + L H+R HTG+ P C C ++F+
Sbjct: 3 PHPMNNLLNYV--VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 90 RKDHMVYHERQHT 102
R DH+ H R HT
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 58.9 bits (143), Expect = 1e-11
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 4 VPPPPTIHAERRSHITDSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFT 61
+ P P + P+ C + C + FSR D H+ HTG+ P +C C + F+
Sbjct: 1 MEPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 62 RKEHLVNHVRQHT 74
R +HL H+R HT
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 45.4 bits (108), Expect = 6e-07
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 203 KASLLEHLRSHPRDC--PYVCT--DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPK 258
+ + +L ++ PY C C + F L H R H +P+ C +C +
Sbjct: 2 EPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHT----GQKPFQCRICMR 57
Query: 259 DFIDKGHLVSHRRSHT 274
+F HL +H R+HT
Sbjct: 58 NFSRSDHLTTHIRTHT 73
Score = 45.4 bits (108), Expect = 6e-07
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 32/100 (32%)
Query: 144 FTRKEHLTNHIRQHTGESPHSC--EFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFN 201
+L N++ P++C E CDR F+R + L RH+R H
Sbjct: 3 PHPMNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHT--------------- 45
Query: 202 DKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
P+ C C + F +L H R+H
Sbjct: 46 -------------GQKPFQCRICMRNFSRSDHLTTHIRTH 72
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 70.1 bits (172), Expect = 1e-15
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 121 HLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCEF--CDRTFTRKE 176
+ H C++ C K++ + HL H R HTGE P SC + C+R F R +
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 177 HLKRHLRQH 185
L RH R H
Sbjct: 64 ELSRHRRTH 72
Score = 62.8 bits (153), Expect = 4e-13
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 37 HYKNHVMWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKD 92
+ + H C + C KT+ + HL H R HTGE P C++ C + F R D
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 93 HMVYHERQH 101
+ H R H
Sbjct: 64 ELSRHRRTH 72
Score = 62.4 bits (152), Expect = 6e-13
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 93 HMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKE 148
+ + C + C K + + HL H R HTGE P C++ C + F R +
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 149 HLTNHIRQH 157
L+ H R H
Sbjct: 64 ELSRHRRTH 72
Score = 61.6 bits (150), Expect = 1e-12
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 65 HLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKD 120
+ H C++ C K++ + H+ H R HTGE PF C + C + F R D
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSD 63
Query: 121 HLVNHVRRH 129
L H R H
Sbjct: 64 ELSRHRRTH 72
Score = 53.2 bits (128), Expect = 1e-09
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 12 AERRSHITDSPFHCDI--CGKYFSRKDHYKNHVMWHTGETPHRCDY--CAKTFTRKEHLV 67
+ C CGK + + H K H HTGE P C + C + F R + L
Sbjct: 7 GPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELS 66
Query: 68 NHVRQH 73
H R H
Sbjct: 67 RHRRTH 72
Score = 38.1 bits (89), Expect = 2e-04
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 203 KASLLEHLRSHPRDCPYVCT--DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDL--CPK 258
+ R ++C+ CGK + +L H R+H ++P+ C C +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTG----EKPFSCSWKGCER 57
Query: 259 DFIDKGHLVSHRRSH 273
F L HRR+H
Sbjct: 58 RFARSDELSRHRRTH 72
Score = 29.7 bits (67), Expect = 0.22
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 237 HQRSHQKGMPMDRPYHCDL--CPKDFIDKGHLVSHRRSHT 274
Q R + C C K + HL +H R+HT
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT 43
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 66.3 bits (161), Expect = 8e-14
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 5/99 (5%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVR-----RHTGESPHKCTYCMKSFTRKEHLT 151
+ TG + F C+ C A+ L H+ R S RK L
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSE 190
+ + C +C +F + L H+ + +
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
Score = 63.6 bits (154), Expect = 7e-13
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 61 TRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYH-----ERQHTGETPFPCQYCPKA 115
+ + TG S C C+ ++ + H + +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 116 FTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 158
RK L+ + + KC YC SF + L+ H+ +
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 62.1 bits (150), Expect = 2e-12
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 5/103 (4%)
Query: 33 SRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVR--QHTGESPHHCNYC---AKS 87
S K + TG + RC C+ + L H+ H + H + S
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 88 FTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHT 130
RK ++ E + + C YC +F L H+ +
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 59.8 bits (144), Expect = 2e-11
Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 7/110 (6%)
Query: 145 TRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQ-----HLPGSEFNCIICTEP 199
+ + TG S C+ C + L H+ + N
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 200 FNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFH--QRSHQKGMPM 247
K SLLE C CG +F +L H + H + +
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSG 111
Score = 50.1 bits (119), Expect = 4e-08
Identities = 19/103 (18%), Positives = 28/103 (27%), Gaps = 9/103 (8%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAK------TFTRKEHLV 67
S F C C + H M TG + RK L+
Sbjct: 11 GSIFTGASKFRCKDCSAAYDTLVELTVH-MNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYH--ERQHTGETPFP 108
+ + C YC SF + H + +H + P
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 27.0 bits (59), Expect = 4.6
Identities = 6/37 (16%), Positives = 8/37 (21%)
Query: 5 PPPPTIHAERRSHITDSPFHCDICGKYFSRKDHYKNH 41
P ++ C CG F H
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 26.3 bits (57), Expect = 9.5
Identities = 10/84 (11%), Positives = 21/84 (25%), Gaps = 7/84 (8%)
Query: 233 NLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTNGITNKFHTGFPDKNFPK 292
+ + + C C + L H + + D N PK
Sbjct: 6 SGKLYGSIFTGA----SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHE---TDNNNPK 58
Query: 293 TETSFMLKHLMKGESMMLSSTPHH 316
+ + L++ E +
Sbjct: 59 RWSKPRKRSLLEMEGKEDAQKVLK 82
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 63.8 bits (156), Expect = 1e-13
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRR-HTGESPHKCTYCMKSFT 145
+ P+ CQ C K F+R DHL H+++ HT E PHKC + +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 61.8 bits (151), Expect = 6e-13
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQ-HTGESPHSCEFCDRTFT 173
+ + P+ C C K F+R +HL HI+Q HT E PH C+ +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 59.1 bits (144), Expect = 6e-12
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQ-HTGESPHHCNYCAKSFT 89
+ P+ C C K F+R +HL H++Q HT E PH C +
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 58.7 bits (143), Expect = 7e-12
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQ-HTGETPFPCQYCPKAFT 117
+ + P+ C C K F+R DH+ H +Q HT E P CQ +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 49.5 bits (119), Expect = 1e-08
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHV-MWHTGETPHRCDYCAKTFT 61
S P+ C CGK FSR DH H+ HT E PH+C +
Sbjct: 5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 42.6 bits (101), Expect = 4e-06
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDF 260
S PY+C CGK F +L H + +RP+ C +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTS---ERPHKCQVWVSGP 51
Score = 41.8 bits (99), Expect = 8e-06
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 27/77 (35%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLR 211
+ + P+ C+ C + F+R +HL H++ +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIK---------------------------Q 34
Query: 212 SHPRDCPYVCTDCGKAF 228
H + P+ C
Sbjct: 35 VHTSERPHKCQVWVSGP 51
Score = 28.7 bits (65), Expect = 0.32
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSH-RRSHT 274
S +PY C C K F HL H ++ HT
Sbjct: 3 SGSSGSV----GKPYICQSCGKGFSRPDHLNGHIKQVHT 37
Score = 25.6 bits (57), Expect = 4.4
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 14 RRSHITDSPFHCDICGKYFS 33
++ H ++ P C + S
Sbjct: 33 KQVHTSERPHKCQVWVSGPS 52
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 61.5 bits (149), Expect = 2e-12
Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 101 HTGETPFPCQYCPKAFTRKDHLVNHVRR-HTGESPHK--------CTYCMKSFTRKEHLT 151
+ P + C + F+ LV HV H G C KSF K L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 152 NHIRQHTGESPHSC 165
NHIR HTGE
Sbjct: 80 NHIRVHTGEKSGPS 93
Score = 60.8 bits (147), Expect = 4e-12
Identities = 23/95 (24%), Positives = 31/95 (32%), Gaps = 21/95 (22%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQ-HTGESPHHCNYCAKSFTRKDHMVYHERQHTG 103
+ C +TF+ LV HV H G + + C
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW----------------- 62
Query: 104 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
C K+F K LVNH+R HTGE +
Sbjct: 63 ---EECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 54.6 bits (131), Expect = 8e-10
Identities = 22/86 (25%), Positives = 27/86 (31%), Gaps = 9/86 (10%)
Query: 5 PPPPTIHAERRSHITDSPFHCDICGKYFSRKDHYKNHV-MWHTGETPHRCDYCA------ 57
P + + C + FS HV M H G C
Sbjct: 8 QPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR 67
Query: 58 --KTFTRKEHLVNHVRQHTGESPHHC 81
K+F K LVNH+R HTGE
Sbjct: 68 EGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 49.2 bits (117), Expect = 5e-08
Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 21/95 (22%)
Query: 129 HTGESPHKCTYCMKSFTRKEHLTNHIRQ-HTGESPHSCEFCDRTFTRKEHLKRHLRQHLP 187
+ C ++F+ L H+ H G + C
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW----------------- 62
Query: 188 GSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCT 222
C + F K L+ H+R H + +
Sbjct: 63 ---EECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 38.8 bits (90), Expect = 3e-04
Identities = 16/68 (23%), Positives = 20/68 (29%), Gaps = 5/68 (7%)
Query: 213 HPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPY-----HCDLCPKDFIDKGHLV 267
C + F L+ H G P + C K F K LV
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 268 SHRRSHTN 275
+H R HT
Sbjct: 80 NHIRVHTG 87
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 4e-12
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C KAF+RK L++H R H GE P +
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 56.4 bits (137), Expect = 5e-11
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE+P+ C+ C K+F+RK ++ H+R H GE P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 56.0 bits (136), Expect = 5e-11
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE+P++C C K+F+RK L +H R H GE P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P+ C C K F+RK L++H R H GE P +
Sbjct: 7 GTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 41.7 bits (99), Expect = 7e-06
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C +CGKAF K L+ HQR+H ++P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAG----EKPSGP 43
Score = 38.6 bits (91), Expect = 9e-05
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S ++P+ C CGK FSRK +H H GE P
Sbjct: 5 SSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE+P+ C C + F+RK L H R H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 35.9 bits (84), Expect = 8e-04
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S + PY C C K F K L+SH+R+H
Sbjct: 3 SGSSGTG----ENPYECHECGKAFSRKYQLISHQRTHA 36
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 4e-12
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
+GE P+ C C K F R HL+ H++RH E +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 56.0 bits (136), Expect = 5e-11
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+GE P+ C C K+F R HL H+++H E
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+GE P+ CN C K+F R H++ H ++H E
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+GE P+ C+ C K F R HL+ H+++H E +
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE P+ C C + F R HL HL++H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 39.0 bits (92), Expect = 5e-05
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK F R H H+ H E
Sbjct: 5 SSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 39.0 bits (92), Expect = 6e-05
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C +CGK F +L+ H + H + ++
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFR----EKSSGP 43
Score = 32.5 bits (75), Expect = 0.013
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S +RPY C+ C K+F HL+ H + H
Sbjct: 3 SGSSGSG----ERPYGCNECGKNFGRHSHLIEHLKRHF 36
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 58.7 bits (143), Expect = 6e-12
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
TGE P+ C C K F+RKD LV+H + H+G+S
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 58.3 bits (142), Expect = 9e-12
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE+P++C C K F+RK+ L +H + H+G+S S
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 54.8 bits (133), Expect = 2e-10
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE+P+ C C K F+RKD +V H++ H+G++
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHC 81
TGE P+ C C K F+RK+ LV+H + H+G+S
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 42.5 bits (101), Expect = 3e-06
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C +CGK F K L+ HQ++H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 38.2 bits (90), Expect = 1e-04
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S ++P+ C CGK FSRKD +H H+G++
Sbjct: 4 GSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE+P+ C C + F+RK+ L H + H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S + PY C C K F K LVSH+++H+
Sbjct: 3 SGSSGTG----ENPYECCECGKVFSRKDQLVSHQKTHS 36
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 7e-12
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C KAFTRK L H + HTGE +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 57.1 bits (139), Expect = 2e-11
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ TGE P+KC+ C K+FTRK L H + HTGE
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 55.6 bits (135), Expect = 8e-11
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE P+ C+ C K+FTRK + H++ HTGE
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 53.7 bits (130), Expect = 5e-10
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TGE P++C C K FTRK L H + HTGE +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C+DCGKAF K L HQ+SH +R
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTG----ERHSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE P+ C C + FTRK L H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 39.4 bits (93), Expect = 5e-05
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C CGK F+RK H HTGE
Sbjct: 5 SSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C C K F K L H++SHT
Sbjct: 3 SGSSGTG----EKPYKCSDCGKAFTRKSGLHIHQQSHT 36
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 8e-12
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C+ C KAFT+K HL H + HTGE P +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 7e-11
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE P++C C K+FT+K HL H + HTGE P
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ C C+K+FT+K H+ H++ HTGE P
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P+ C C+K FT+K HL H + HTGE P +
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C C KAF K +L HQ++H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 39.1 bits (92), Expect = 6e-05
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C+ C + FT+K HL +H + H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C +C K F++K H H HTGE P
Sbjct: 4 GSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 36.4 bits (85), Expect = 6e-04
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C +C K F K HL H+++HT
Sbjct: 3 SGSSGTG----EKPYECKVCSKAFTQKAHLAQHQKTHT 36
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 8e-12
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
+GE PF C+ C KAF + HL +H+R HTGE P +
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 9e-11
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+GE P KC C K+F + HL +H+R HTGE P
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 6e-10
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+GE P C C K+F + H+ H R HTGE P
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 8e-10
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+GE P +C C K F + HL +H+R HTGE P +
Sbjct: 7 GSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 38.6 bits (91), Expect = 1e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE P C+ C + F + HL HLR H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 38.2 bits (90), Expect = 1e-04
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + PF C CGK F + H +H+ HTGE P
Sbjct: 5 SSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 38.2 bits (90), Expect = 1e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + P+ C +CGKAFR +L H R H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 34.4 bits (80), Expect = 0.002
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++P+ C C K F HL SH R HT
Sbjct: 3 SGSSGSG----EKPFKCKECGKAFRQNIHLASHLRIHT 36
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 9e-12
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE + C C KAF RK L+ H R HTGE P +
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 7e-11
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE + C+ C K+F RK ++ H+R HTGE P
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 54.8 bits (133), Expect = 1e-10
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE ++C+ C K+F RK L H R HTGE P
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 6e-10
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE + C C K F RK L+ H R HTGE P +
Sbjct: 7 GTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 4e-06
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 208 EHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + Y C++CGKAF K L+ HQR H ++P
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTG----EKPSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + + C CGK F+RK H HTGE P
Sbjct: 4 GSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE + C C + F RK L H R H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 36.3 bits (85), Expect = 5e-04
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S +R Y C C K F K L+ H+R HT
Sbjct: 3 SGSSGTG----ERHYECSECGKAFARKSTLIMHQRIHT 36
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 58.3 bits (142), Expect = 9e-12
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TG P+ C C K F+ K L+ H R HTG P +
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 56.4 bits (137), Expect = 4e-11
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TG P+ C+ CAK+F+ K ++ H+R HTG P
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 56.0 bits (136), Expect = 7e-11
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ TG P+ C+ C K+F+ K L H R HTG P
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TG P+ C CAKTF+ K L+ H R HTG P +
Sbjct: 7 GTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S PY C+ C K F LK L+ HQRSH +P
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTG----VKPSGP 43
Score = 39.1 bits (92), Expect = 6e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TG P+ C C +TF+ K L H R H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S P+ C C K FS K H HTG P
Sbjct: 5 SSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 36.4 bits (85), Expect = 6e-04
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S +PY C C K F K L+ H+RSHT
Sbjct: 3 SGSSGTG----VKPYGCSQCAKTFSLKSQLIVHQRSHT 36
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 9e-12
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE PF C C KAF K +L+ H R HTGE P +
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 56.3 bits (137), Expect = 5e-11
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE P C+ C K+F K +++ H+R HTGE P
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 9e-11
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+ TGE P +C+ C K+F K +L H R HTGE P
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 50.6 bits (122), Expect = 6e-09
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHC 81
TGE P C C K F K +L+ H R HTGE P
Sbjct: 7 GTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 43.6 bits (104), Expect = 1e-06
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + P+ C++C KAF K NL+ HQR+H ++P
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTG----EKPSGP 43
Score = 38.6 bits (91), Expect = 1e-04
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE P C C + F K +L H R H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + PF C C K F+ K + H HTGE P
Sbjct: 5 SSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 6e-04
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++P+ C C K F K +L+ H+R+HT
Sbjct: 3 SGSSGTG----EKPFECSECQKAFNTKSNLIVHQRTHT 36
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 58.3 bits (142), Expect = 1e-11
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TG+ PF C +C K+F K +LV H R HTGE +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 57.2 bits (139), Expect = 3e-11
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TG+ P C +C KSF K ++V H+R HTGE P
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 56.0 bits (136), Expect = 6e-11
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ TG+ P +CT+C KSF K +L H R HTGE
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 52.9 bits (128), Expect = 8e-10
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TG+ P C +C K+F K +LV H R HTGE +
Sbjct: 7 GTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 43.7 bits (104), Expect = 1e-06
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S P+ CT CGK+FR KGNL+ HQR H ++
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTG----EKSGPS 43
Score = 39.1 bits (92), Expect = 6e-05
Identities = 14/39 (35%), Positives = 15/39 (38%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S PF C CGK F K + H HTGE
Sbjct: 5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TG+ P C C ++F K +L H R H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 36.8 bits (86), Expect = 3e-04
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S +P+ C C K F KG+LV+H+R HT
Sbjct: 3 SGSSGTG----QKPFECTHCGKSFRAKGNLVTHQRIHT 36
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
+GE P+ C C K + R+ L H R HTGE +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 57.5 bits (140), Expect = 2e-11
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ +GE P+KC C K + R+ L H R HTGE
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 54.5 bits (132), Expect = 2e-10
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ +GE P+ C C K + R+ + +H+R HTGE
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 52.9 bits (128), Expect = 6e-10
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ +GE P++C C K + R+ L H R HTGE +
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 42.5 bits (101), Expect = 4e-06
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCD 254
S + PY C +CGK ++ + +L FHQR H ++
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTG----EKLSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ +GE P+ C C + + R+ L H R H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 39.1 bits (92), Expect = 5e-05
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCD 54
S + P+ C CGK + R+ H HTGE
Sbjct: 5 SSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C C K + + L H+R HT
Sbjct: 3 SGSSGSG----EKPYKCVECGKGYKRRLDLDFHQRVHT 36
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 57.9 bits (141), Expect = 1e-11
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
TG P+ C C KAF K +L+ H R HTGES
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 57.1 bits (139), Expect = 2e-11
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ TG P+ C C K+F K +L H R HTGES S
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 56.0 bits (136), Expect = 6e-11
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TG P+ CN C K+F K +++ H R HTGE+
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 51.7 bits (125), Expect = 2e-09
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHC 81
TG P+ C+ C K F K +L+ H R HTGES
Sbjct: 7 GTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 43.6 bits (104), Expect = 1e-06
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S PYVC +CGKAFR K L+ H R+H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S P+ C+ CGK F K + H HTGE+
Sbjct: 5 SSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TG P+ C C + F K +L H R H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 35.9 bits (84), Expect = 8e-04
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S +PY C+ C K F K +L+ H R+HT
Sbjct: 3 SGSSGTG----MKPYVCNECGKAFRSKSYLIIHTRTHT 36
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
+GE P+ C C KAF R HL H R HTG P +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 56.7 bits (138), Expect = 4e-11
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+GE P+KC+ C K+F R HL H R HTG P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 52.9 bits (128), Expect = 7e-10
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+GE P+ C+ C K+F R H+ H R HTG P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 41 HVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+GE P++C C K F R HL H R HTG P +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 38.6 bits (91), Expect = 7e-05
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C++CGKAF +L H+R H RP
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTG----YRPSGP 43
Score = 38.6 bits (91), Expect = 7e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE P+ C C + F R HL H R H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 38.6 bits (91), Expect = 9e-05
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C CGK F R H H HTG P
Sbjct: 4 GSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 33.2 bits (77), Expect = 0.007
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C C K F HL HRR HT
Sbjct: 3 SGSSGSG----EKPYKCSECGKAFHRHTHLNEHRRIHT 36
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C KAFT + +L+ H + HT + P +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 56.0 bits (136), Expect = 6e-11
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+ TGE P+ C C K+FT + +L H + HT + P
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 54.4 bits (132), Expect = 2e-10
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE P+ C C K+FT + +++ H++ HT + P
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 53.3 bits (129), Expect = 6e-10
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TGE P+ C C K FT + +L+ H + HT + P +
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 42.5 bits (101), Expect = 3e-06
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY+C +CGKAF ++ NL+ HQ+ H K +P
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTK----QKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE P+ C C + FT + +L +H + H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C CGK F+ + + H HT + P
Sbjct: 4 GSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C C K F + +L+ H++ HT
Sbjct: 3 SGSSGTG----EKPYICAECGKAFTIRSNLIKHQKIHT 36
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.6 bits (140), Expect = 1e-11
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
+GE PF C+ C K FT+ HL +H R HTGE P +
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+GE P +C C K FT+ HL +H R HTGE P
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 54.9 bits (133), Expect = 2e-10
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+GE P C C K FT+ H+ H+R HTGE P
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+GE P +C+ C K FT+ HL +H R HTGE P +
Sbjct: 7 GSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 39.5 bits (93), Expect = 4e-05
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + PF C+ CGK F++ H +H HTGE P
Sbjct: 4 GSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 39.1 bits (92), Expect = 7e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE P CE C + FT+ HL H R H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 208 EHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + P+ C +CGK F +L HQR H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++P+ C+ C K F HL SH+R HT
Sbjct: 3 SGSSGSG----EKPFQCEECGKRFTQNSHLHSHQRVHT 36
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 57.5 bits (140), Expect = 1e-11
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 98 ERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
+GE P+ C C KAF RKD L++H R H GES
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 57.1 bits (139), Expect = 2e-11
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 127 RRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+GE+P++C+ C K+F RK+ L +H R H GES S
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 54.8 bits (133), Expect = 1e-10
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 71 RQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+GE+P+ C+ C K+F RKD ++ H+R H GE+
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 54.8 bits (133), Expect = 2e-10
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHC 81
+GE P+ C C K F RK+ L++H R H GES
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
++P+ C CGK F+RKD +H H GE+
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 40.6 bits (96), Expect = 2e-05
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
PY C++CGKAF K L+ HQR+H +
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAG----ESGPSS 41
Score = 36.0 bits (84), Expect = 7e-04
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 155 RQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE+P+ C C + F RK+ L H R H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 33.6 bits (78), Expect = 0.004
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHT 274
PY C C K F K L+SH+R+H
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHA 34
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ CQ C KAF HLV H H+GE P +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE P+KC C K+F HL H H+GE P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 52.9 bits (128), Expect = 8e-10
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ C C K+F H+V H H+GE P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P++C C K F HLV H H+GE P +
Sbjct: 7 GTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 208 EHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C CGKAFR+ +L+ H H +RP
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSG----ERPSGP 43
Score = 38.6 bits (91), Expect = 9e-05
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C +CGK F H H H+GE P
Sbjct: 4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C+ C + F HL +H H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 34.0 bits (79), Expect = 0.003
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C +C K F HLV H H+
Sbjct: 3 SGSSGTG----EKPYKCQVCGKAFRVSSHLVQHHSVHS 36
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 57.7 bits (140), Expect = 2e-11
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 124 NHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHTGESPHSCE 166
+ TGE P CT+ C F+R + L+ H R H+G P
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 56.9 bits (138), Expect = 3e-11
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 97 HERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE PF C + C F+R D L H R H+G P +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 55.4 bits (134), Expect = 1e-10
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 68 NHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQ 110
+ TGE P C + C F+R D + H R H+G P
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 53.5 bits (129), Expect = 5e-10
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 40 NHVMWHTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TGE P C + C F+R + L H R H+G P +
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 46.9 bits (112), Expect = 1e-07
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 152 NHIRQHTGESPHSCEF--CDRTFTRKEHLKRHLRQH 185
+ TGE P +C + C F+R + L RH R H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 40.4 bits (95), Expect = 2e-05
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 12 AERRSHITDSPFHCD--ICGKYFSRKDHYKNHVMWHTGETPHRCD 54
+ S + PF C CG FSR D H H+G P
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 34.2 bits (79), Expect = 0.003
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 209 HLRSHPRDCPYVCT--DCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCD 254
S + P+ CT CG F L H+RSH +P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSG----VKPSGPS 46
Score = 28.0 bits (63), Expect = 0.48
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 237 HQRSHQKGMPMDRPYHCD--LCPKDFIDKGHLVSHRRSHTN 275
S ++P+ C C F L HRRSH+
Sbjct: 3 SGSSGTG----EKPFACTWPGCGWRFSRSDELSRHRRSHSG 39
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TG F C C KAFTRK L H + HTGE P +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 56.4 bits (137), Expect = 4e-11
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+ TG +CT C K+FTRK L+ H + HTGE P
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TG C C K+FTRK + H++ HTGE P
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TG C C K FTRK L H + HTGE P +
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 1e-05
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + CT+CGKAF K L HQ+ H ++P
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTG----EKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TG C C + FTRK L H + H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S F C CGK F+RK H HTGE P
Sbjct: 4 GSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S + + C C K F K L H++ HT
Sbjct: 3 SGSSGTG----GKHFECTECGKAFTRKSTLSMHQKIHT 36
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
+GE P+ C YC KAF LV H R HTGE P +
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+GE P+ C YC K+F L H R HTGE P
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+GE P+ C+YC K+F +V H+R HTGE P
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 6e-10
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 41 HVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+GE P+ CDYC K F LV H R HTGE P +
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 6e-06
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PYVC CGKAF L L+ HQR H ++P
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTG----EKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ CD CGK F H HTGE P
Sbjct: 5 SSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE P+ C++C + F L RH R H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 35.6 bits (83), Expect = 0.001
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY CD C K F LV H+R HT
Sbjct: 3 SGSSGSG----EKPYVCDYCGKAFGLSAELVRHQRIHT 36
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE + C+ C K+F+R L+ H R H+GE P +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 56.0 bits (136), Expect = 6e-11
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE ++C C KSF+R ++ HER H+GE P
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 56.0 bits (136), Expect = 6e-11
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ TGE + C C KSF+R L H R H+GE P
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TGE + C C K+F+R L+ H R H+GE P +
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + Y C +CGK+F L+ H+R H ++P
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSG----EKPSGP 43
Score = 39.0 bits (92), Expect = 7e-05
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE ++C+ C ++F+R L +H R H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + ++C CGK FSR H H+GE P
Sbjct: 4 GSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++ Y+C C K F L+ H R H+
Sbjct: 3 SGSSGTG----EKLYNCKECGKSFSRAPCLLKHERLHS 36
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE PF C C K++ ++ HL H R HTGE P +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 7e-11
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE P KC C KS+ ++ HLT H R HTGE P
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P C C KS+ ++ H+ H+R HTGE P
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P +C C K++ ++ HL H R HTGE P +
Sbjct: 7 GTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + P+ C +CGK++ + +L HQR H ++P
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTG----EKPSGP 43
Score = 38.7 bits (91), Expect = 8e-05
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + PF C CGK ++++ H H HTGE P
Sbjct: 4 GSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P C C +++ ++ HL +H R H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++P+ C C K + + HL H+R HT
Sbjct: 3 SGSSGTG----EKPFKCGECGKSYNQRVHLTQHQRVHT 36
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C+ C KAF++ HL+ H R HTGE P +
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 54.4 bits (132), Expect = 2e-10
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE P++C C K+F++ HL H R HTGE P
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ C C K+F++ H++ H+R HTGE P
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 9e-10
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P+ C C K F++ HL+ H R HTGE P +
Sbjct: 7 GTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 5e-05
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C +CGKAF +L+ HQR H ++P
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTG----EKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C CGK FS+ H H HTGE P
Sbjct: 4 GSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C+ C + F++ HL +H R H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C C K F HL+ H+R HT
Sbjct: 3 SGSSGTG----EKPYECKECGKAFSQTTHLIQHQRVHT 36
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 2e-11
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
+GE PF C+ C K FT+ L +H R HTGE P +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 8e-11
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ +GE P KC C K FT+ L +H R HTGE P
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ +GE P C C K FT+ + H+R HTGE P
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 8e-10
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ +GE P +C+ C K FT+ L +H R HTGE P +
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 6e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ +GE P CE C + FT+ L H R H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 38.7 bits (91), Expect = 1e-04
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + PF C+ CGK F++ +H HTGE P
Sbjct: 4 GSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + P+ C +CGK F L HQR H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++P+ C+ C K F L SH+R HT
Sbjct: 3 SGSSGSG----EKPFKCEECGKRFTQNSQLHSHQRVHT 36
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 2e-11
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C K+F +K HL H R HTGE P +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 56.8 bits (138), Expect = 4e-11
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE P+ C C KSF +K HL H R HTGE P
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ CN C KSF +K H+ H R HTGE P
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P+ C+ C K+F +K HL H R HTGE P +
Sbjct: 7 GTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY+C +CGK+F K +L H+R H ++P
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTG----EKPSGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C C ++F +K HL RH R H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 39.0 bits (92), Expect = 6e-05
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK F +K H H HTGE P
Sbjct: 4 GSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K FI K HL HRR HT
Sbjct: 3 SGSSGTG----EKPYICNECGKSFIQKSHLNRHRRIHT 36
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 2e-11
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
GE P+ C C KAF+ K +L+ H+R H+GE P +
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 56.0 bits (136), Expect = 5e-11
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+ GE P+ C+ C K+F+ K +L H+R H+GE P
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 55.6 bits (135), Expect = 8e-11
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ GE P+ C+ C K+F+ K +++ H R H+GE P
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHC 81
+ GE P+ C C K F+ K +L+ H+R H+GE P
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 42.2 bits (100), Expect = 6e-06
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C++CGKAF K L+ H R+H ++P
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSG----EKPSGP 43
Score = 38.7 bits (91), Expect = 8e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ GE P+ C C + F+ K +L H+R H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C CGK FS K + H+ H+GE P
Sbjct: 4 GSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C C K F K +L+ H R+H+
Sbjct: 3 SGSSGAG----EKPYGCSECGKAFSSKSYLIIHMRTHS 36
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 2e-11
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
TGE P+ C C KAFT + +L+ H + HTGE P
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 8e-11
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE P+ CT C K+FT + +L H + HTGE P
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQ 110
TGE P+ C C K+FT + +++ H++ HTGE P
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 8e-10
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P+ C C K FT + +L+ H + HTGE P +
Sbjct: 7 GTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 3e-06
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY+CT CGKAF + NL+ HQ+ H ++P
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTG----EKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C C + FT + +L +H + H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 36.7 bits (86), Expect = 4e-04
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S +RPY C +C K F D+ +L+ H++ HT
Sbjct: 3 SGSSGTG----ERPYICTVCGKAFTDRSNLIKHQKIHT 36
Score = 36.7 bits (86), Expect = 5e-04
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C +CGK F+ + + H HTGE P
Sbjct: 4 GSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 57.1 bits (139), Expect = 2e-11
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
TGE P+ C C KAF K +L+ H R HTGES
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 55.9 bits (136), Expect = 6e-11
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ CN C K+F K +++ H+R HTGE+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 55.6 bits (135), Expect = 8e-11
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE P++C C K+F K +L H R HTGES S
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 51.3 bits (124), Expect = 3e-09
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHC 81
TGE P+ C+ C K F K +L+ H R HTGES
Sbjct: 7 GTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C +C KAF K NLM HQR+H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 38.2 bits (90), Expect = 1e-04
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ C K F+ K + H HTGE+
Sbjct: 5 SSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 37.8 bits (89), Expect = 1e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C C + F K +L H R H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 36.3 bits (85), Expect = 6e-04
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K F K +L+ H+R+HT
Sbjct: 3 SGSSGTG----EKPYECNECQKAFNTKSNLMVHQRTHT 36
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 2e-11
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
+GE P+ C C K FT+ HL NH R HTGE P +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 7e-11
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ +GE P+KC C K FT+ HLTNH R HTGE P
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 54.0 bits (131), Expect = 3e-10
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ +GE P+ CN C K FT+ H+ H R HTGE P
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 5e-10
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ +GE P++C+ C K FT+ HL NH R HTGE P +
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ +GE P+ C C + FT+ HL H R H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 38.2 bits (90), Expect = 1e-04
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK F++ H NH HTGE P
Sbjct: 4 GSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C +CGK F +L H R H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K F HL +H R HT
Sbjct: 3 SGSSGSG----EKPYKCNECGKVFTQNSHLTNHWRIHT 36
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 2e-11
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C K F R HL H HTGE P +
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 55.9 bits (136), Expect = 6e-11
Identities = 18/42 (42%), Positives = 19/42 (45%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE P+KC C K F R HL H HTGE P
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 5e-10
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ C+ C K F R H+ H+ HTGE P
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 6e-10
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P++C C K F R HL H HTGE P +
Sbjct: 7 GTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 6e-05
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C C + F R HL RH H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 38.6 bits (91), Expect = 8e-05
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C CGK F R H H + HTGE P
Sbjct: 4 GSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 38.2 bits (90), Expect = 1e-04
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C +CGK FR +L HQ H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 33.2 bits (77), Expect = 0.007
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C C K F HL H+ HT
Sbjct: 3 SGSSGTG----EKPYKCHECGKVFRRNSHLARHQLIHT 36
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 2e-11
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P C C K+F + HL+ H R HTGE P +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 56.4 bits (137), Expect = 4e-11
Identities = 20/43 (46%), Positives = 22/43 (51%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+ TGE PHKC C KSF + HL H R HTGE P
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 8e-11
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE PH CN C KSF + H++ H+R HTGE P
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 5e-10
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TGE PH+C+ C K+F + HL+ H R HTGE P +
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + P+ C +CGK+F +L+ HQR H ++P
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTG----EKPSGP 43
Score = 39.0 bits (92), Expect = 7e-05
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE PH C C ++F + HL +H R H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P C+ CGK F + H H HTGE P
Sbjct: 4 GSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S +RP+ C+ C K FI HL+ H+R HT
Sbjct: 3 SGSSGTG----ERPHKCNECGKSFIQSAHLIQHQRIHT 36
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 57.1 bits (139), Expect = 2e-11
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE PF C C K F+R+ L H + HTGE P +
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 5e-11
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ TGE P KC C K F+R+ L H + HTGE P
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE P C C K F+R+ + H + HTGE P
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 9e-09
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P +C C K F+R+ L H + HTGE P +
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 5e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + P+ C +CGK F + L H + H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 39.0 bits (92), Expect = 7e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE P C C + F+R+ L H + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + PF C CGK FSR+ H HTGE P
Sbjct: 4 GSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++P+ C C K F + L H + HT
Sbjct: 3 SGSSGTG----EKPFKCVECGKGFSRRSALNVHHKLHT 36
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 3e-11
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C KAF HL H+R HT E+ +
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+ TGE P+ C C K+F HL H+R HT E+
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 52.9 bits (128), Expect = 7e-10
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE P+ CN C K+F H+ H R HT ET
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TGE P+ C+ C K F HL H+R HT E+ +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 208 EHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCD 254
S + PY C CGKAF L +L H R H +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT----QETLSGPS 44
Score = 39.0 bits (92), Expect = 6e-05
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCD 54
S + P+ C++CGK F H H+ HT ET
Sbjct: 4 GSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE P+SC C + F HL +HLR H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C++C K F+ HL H R HT
Sbjct: 3 SGSSGTG----EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 57.2 bits (139), Expect = 3e-11
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
+GE PF C+ C K F +H R H+GE P +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 56.4 bits (137), Expect = 4e-11
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+ +GE P KC C K F +H R H+GE P
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 54.9 bits (133), Expect = 1e-10
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQ 110
+ +GE P C C K F H+R H+GE P
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 51.8 bits (125), Expect = 2e-09
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ +GE P +C+ C K F +H R H+GE P +
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 42.2 bits (100), Expect = 5e-06
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCD 254
S + P+ C +CGK F HQRSH ++P
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSG----EKPSGPS 44
Score = 38.7 bits (91), Expect = 9e-05
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ +GE P CE C + F H R H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCD 54
S + PF C+ CGK F +H H+GE P
Sbjct: 5 SSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 36.8 bits (86), Expect = 3e-04
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++P+ C+ C K F SH+RSH+
Sbjct: 3 SGSSGSG----EKPFKCEECGKGFYTNSQCYSHQRSHS 36
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 3e-11
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+ TGE P KC C KSF + L H HT E P
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 57.1 bits (139), Expect = 3e-11
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE PF C C K+F + L H HT E P +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 53.7 bits (130), Expect = 4e-10
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE P C+ C KSF + + H HT E P
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 52.9 bits (128), Expect = 8e-10
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TGE P +CD C K+F + L H HT E P +
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 42.1 bits (100), Expect = 5e-06
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCD 54
S + PF CDICGK F + H M HT E P
Sbjct: 4 GSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 39.8 bits (94), Expect = 4e-05
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCD 254
S + P+ C CGK+F + L H H ++P
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTA----EKPSGPS 44
Score = 39.4 bits (93), Expect = 4e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE P C+ C ++F + L RH H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++P+ CD+C K F + L H HT
Sbjct: 3 SGSSGTG----EKPFKCDICGKSFCGRSRLNRHSMVHT 36
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 3e-11
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ TGE P+KC+ C KSFT K L H + HTGE
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 56.8 bits (138), Expect = 3e-11
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C K+FT K L H + HTGE +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE P+ C+ C KSFT K + H++ HTGE
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 53.3 bits (129), Expect = 6e-10
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TGE P++C C K+FT K L H + HTGE +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C+DCGK+F K L HQ+ H +R
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTG----ERHSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE P+ C C ++FT K L+ H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C CGK F+ K + H HTGE
Sbjct: 5 SSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C C K F K L H++ HT
Sbjct: 3 SGSSGTG----EKPYKCSDCGKSFTWKSRLRIHQKCHT 36
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 3e-11
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
G+ F C C K FT+ L H R HTGE P +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
G+ KC C K+FT+ LT H R HTGE P
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 5e-10
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
G+ CN C K+FT+ + H+R HTGE P
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
G+ +C+ C KTFT+ L H R HTGE P +
Sbjct: 7 GAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 38.6 bits (91), Expect = 7e-05
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + C +C K F +L HQR H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S F C+ C K F++ H HTGE P
Sbjct: 4 GSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
G+ C C +TFT+ L H R H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S + + C+ C K F L H+R HT
Sbjct: 3 SGSSGAG----KKLFKCNECKKTFTQSSSLTVHQRIHT 36
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 56.7 bits (138), Expect = 3e-11
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE PF C C K+F+ L H R HTGE P +
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 17/42 (40%), Positives = 19/42 (45%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE P +C C KSF+ L H R HTGE P
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 53.7 bits (130), Expect = 4e-10
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P C C KSF+ + H+R HTGE P
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 8e-09
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHC 81
TGE P C C K+F+ L H R HTGE P
Sbjct: 7 GTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + P+ C +CGK+F + L HQR H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 15/39 (38%), Positives = 16/39 (41%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + PF C CGK FS H HTGE P
Sbjct: 5 SSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P C C ++F+ L H R H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++P+ C C K F L +H+R HT
Sbjct: 3 SGSSGTG----EKPFECAECGKSFSISSQLATHQRIHT 36
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.7 bits (138), Expect = 3e-11
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE PF C C K FT K +L+ H + HTGE P +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 56.4 bits (137), Expect = 5e-11
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ TGE+P C+ C K FT K +L H + HTGE P
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 56.0 bits (136), Expect = 7e-11
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE+P C+ C K FT K +++ H++ HTGE P
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TGE P C C K FT K +L+ H + HTGE P +
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 42.9 bits (102), Expect = 2e-06
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + P++C++CGK F K NL+ HQ+ H +RP
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTG----ERPSGP 43
Score = 38.6 bits (91), Expect = 7e-05
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S ++PF C CGK F+ K + H HTGE P
Sbjct: 4 GSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 38.6 bits (91), Expect = 8e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE+P C C + FT K +L H + H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 36.3 bits (85), Expect = 6e-04
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S + P+ C C K F K +L+ H++ HT
Sbjct: 3 SGSSGTG----ENPFICSECGKVFTHKTNLIIHQKIHT 36
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 3e-11
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C+ C K + K +L H + HTGE P +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE P+KC C K + K +L H + HTGE P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ C C K + K ++ H++ HTGE P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 52.1 bits (126), Expect = 2e-09
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P++C+ C K + K +L H + HTGE P +
Sbjct: 7 GTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 41.7 bits (99), Expect = 7e-06
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C CGK + K NL HQ+ H +RP
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTG----ERPSGP 43
Score = 38.7 bits (91), Expect = 8e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ CE C + + K +L H + H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK ++ K + H HTGE P
Sbjct: 4 GSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K + K +L H++ HT
Sbjct: 3 SGSSGTG----EKPYKCEKCGKGYNSKFNLDMHQKVHT 36
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 3e-11
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
GE + C C K F++ HL H R HTGE P +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
GE +KC C K F++ HL H R HTGE P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
GE + C+ C K F++ H+ H+R HTGE P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 5e-10
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
GE ++CD C K F++ HL H R HTGE P +
Sbjct: 7 GMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 41.7 bits (99), Expect = 7e-06
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + + + CD+CGK FS+ H + H HTGE P
Sbjct: 4 GSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 8e-05
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + Y C CGK F +L HQR H ++P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTG----EKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
GE + C+ C + F++ HL+ H R H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 36.4 bits (85), Expect = 6e-04
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++ Y CD+C K+F HL +H+R HT
Sbjct: 3 SGSSGMG----EKCYKCDVCGKEFSQSSHLQTHQRVHT 36
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 56.7 bits (138), Expect = 3e-11
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C KAF +K +L H R HTGE P +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 8e-11
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ TGE P++C C K+F +K +LT H R HTGE P
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 2e-10
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE P+ C C K+F +K ++ H+R HTGE P
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TGE P+RC C K F +K +L H R HTGE P +
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C +CGKAF K NL HQR H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE P+ C C + F +K +L +H R H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C CGK F++K + H HTGE P
Sbjct: 4 GSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C C K F K +L H+R HT
Sbjct: 3 SGSSGTG----EKPYRCGECGKAFAQKANLTQHQRIHT 36
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 3e-11
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C K+FT+K L H + HTGE P +
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 54.9 bits (133), Expect = 2e-10
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ C+ C KSFT+K + H++ HTGE P
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 54.5 bits (132), Expect = 2e-10
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE P++C+ C KSFT+K L H + HTGE P
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 52.2 bits (126), Expect = 1e-09
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P+ C C K+FT+K L H + HTGE P +
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C+ CGK+F K L HQ+ H ++P
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTG----EKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C ICGK F++K H HTGE P
Sbjct: 5 SSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C C ++FT+K L H + H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C +C K F K L H++ HT
Sbjct: 3 SGSSGTG----EKPYECSICGKSFTKKSQLHVHQQIHT 36
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 56.4 bits (137), Expect = 4e-11
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C+ C K F + L H HTGE P +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 6e-11
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+ TGE P+KC C K F + L H HTGE P
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 6e-10
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE P+ C C K F + + H HTGE P
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TGE P++C+ C K F + L H HTGE P +
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C +CGK F + +L H H ++P
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTG----EKPSGP 43
Score = 39.1 bits (92), Expect = 7e-05
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE P+ CE C + F + L H H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK F + H M HTGE P
Sbjct: 4 GSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K FI + L +H HT
Sbjct: 3 SGSSGTG----EKPYKCEECGKGFICRRDLYTHHMVHT 36
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 4e-11
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C K FT+ HL NH R HTG P +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE P+KC C K FT+ HL NH R HTG P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ CN C K FT+ H+ H+R HTG P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 52.5 bits (127), Expect = 9e-10
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P++C+ C K FT+ HL NH R HTG P +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C +CGK F +L HQR H +P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTG----VKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK F++ H NH HTG P
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C C + FT+ HL H R H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K F HL +H+R HT
Sbjct: 3 SGSSGTG----EKPYKCNECGKVFTQNSHLANHQRIHT 36
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 56.3 bits (137), Expect = 4e-11
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
+ E P+ C+ C K + R+ +L H R H GE +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 56.0 bits (136), Expect = 7e-11
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ + E P+KC C K + R+ +L H R H GE
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ + E P+ C C K + R+ ++ H+R H GE
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 51.7 bits (125), Expect = 2e-09
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ + E P++C+ C K + R+ +L H R H GE +
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C DCGK + + NL HQR H ++
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMG----EKTSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ + E P+ CE C + + R+ +L H R H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK ++R+ + H H GE
Sbjct: 4 GSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 35.5 bits (83), Expect = 0.001
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K + + +L H+R H
Sbjct: 3 SGSSGSV----EKPYKCEDCGKGYNRRLNLDMHQRVHM 36
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 56.4 bits (137), Expect = 4e-11
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
+GE P+ C C KAF K L+ H R H G S
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 56.4 bits (137), Expect = 4e-11
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ +GE P++C C K+F K L H R H G S S
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 53.3 bits (129), Expect = 6e-10
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ +GE P+ CN C K+F K ++ HER H G +
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHC 81
+ +GE P+ C+ C K F K L+ H R H G S
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C +CGKAF K L+ H+R+H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 37.9 bits (89), Expect = 1e-04
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK F K H H G +
Sbjct: 5 SSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 36.4 bits (85), Expect = 5e-04
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ +GE P+ C C + F K L H R H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K FI K L+ H R+H
Sbjct: 3 SGSSGSG----EKPYECNECGKAFIWKSLLIVHERTHA 36
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 4e-11
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
+GE PF C C K F R+ HL H+R H+ E +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+GE P KC C K F R+ HL H+R H+ E
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+GE P +C+ C K F R+ HL H+R H+ E +
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 53.3 bits (129), Expect = 5e-10
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+GE P CN C K F R+ H+ H R H+ E
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 38.7 bits (91), Expect = 7e-05
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + PF C+ CGK F R+ H H+ H+ E
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 38.7 bits (91), Expect = 9e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE P C C + F R+ HL HLR H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + P+ C +CGK F + +L H R H + ++
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSR----EKSSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S +RP+ C+ C K F + HL H R H+
Sbjct: 3 SGSSGSG----ERPFKCNECGKGFGRRSHLAGHLRLHS 36
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 56.4 bits (137), Expect = 4e-11
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TG+ P+ C C KAF K L+ H R HTGE P +
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TG+ P+ C C K+F K ++ H R HTGE P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 54.5 bits (132), Expect = 2e-10
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TG+ P++C C K+F K L H R HTGE P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 52.2 bits (126), Expect = 1e-09
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TG+ P+ C C K F K L+ H R HTGE P +
Sbjct: 7 GTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 4e-06
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S PY C +CGKAF+ K +L+ H+RSH ++P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTG----EKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 14/40 (35%), Positives = 15/40 (37%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S P+ C CGK F K H HTGE P
Sbjct: 4 GSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TG+ P+ C C + F K L H R H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 36.4 bits (85), Expect = 6e-04
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S RPY C C K F K L+ HRRSHT
Sbjct: 3 SGSSGTG----QRPYECIECGKAFKTKSSLICHRRSHT 36
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 4e-11
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P C C KAF K L+ H R H + +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 55.3 bits (134), Expect = 1e-10
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE P KCT C K+F K L H R H +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P C C K+F K ++ H+R H +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 52.9 bits (128), Expect = 8e-10
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P +C C K F K L+ H R H + +
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 44.5 bits (106), Expect = 8e-07
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + P CT+CGKAF K L+ HQR+H D+
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVD----DKHSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P C C + F K L H R H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/40 (25%), Positives = 12/40 (30%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P C CGK F K H H +
Sbjct: 4 GSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++P C C K F K L+ H+R+H
Sbjct: 3 SGSSGTG----EKPCKCTECGKAFCWKSQLIMHQRTHV 36
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 4e-11
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C KAF + L H H+GE P +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 54.5 bits (132), Expect = 2e-10
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ CN C K+F + + H+ H+GE P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE P+KC C K+F + L H H+GE P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 51.8 bits (125), Expect = 2e-09
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P++C+ C K F + L H H+GE P +
Sbjct: 7 GTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 42.1 bits (100), Expect = 5e-06
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C +CGKAFR + +L HQ +H ++P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSG----EKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK F + H H+GE P
Sbjct: 4 GSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 36.4 bits (85), Expect = 5e-04
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C C + F + L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K F + L H+ +H+
Sbjct: 3 SGSSGTG----EKPYKCNECGKAFRARSSLAIHQATHS 36
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 5e-11
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
TGE P+ C C K+F +K L H R HTGE+P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 56.0 bits (136), Expect = 6e-11
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE P++C+ C KSF +K L H R HTGE+P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 55.2 bits (134), Expect = 1e-10
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ C+ C KSF +K + H+R HTGE P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P+ C C K+F +K L H R HTGE+P +
Sbjct: 7 GTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 42.9 bits (102), Expect = 3e-06
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C+DCGK+F K L HQR H + P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTG----ENPSGP 43
Score = 38.7 bits (91), Expect = 9e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C C ++F +K L H R H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C CGK F +K H HTGE P
Sbjct: 5 SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 36.4 bits (85), Expect = 5e-04
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C C K FI K L H+R HT
Sbjct: 3 SGSSGTG----EKPYECSDCGKSFIKKSQLHVHQRIHT 36
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 56.4 bits (137), Expect = 5e-11
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE + C C K F+R L H + HTGE P +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE +KC C K F+R L+ H + HTGE P
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 53.7 bits (130), Expect = 4e-10
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE + CN C K F+R + H++ HTGE P
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 1e-09
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 41 HVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE ++C+ C K F+R L H + HTGE P +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 38.7 bits (91), Expect = 1e-04
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + + C+ CGK FSR H HTGE P
Sbjct: 4 GSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + Y C +CGK F L HQ+ H ++P
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTG----EKPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE + C C + F+R L +H + H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 33.6 bits (78), Expect = 0.005
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++ Y C+ C K F L H++ HT
Sbjct: 3 SGSSGTG----EKRYKCNECGKVFSRNSQLSQHQKIHT 36
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 5e-11
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
TGE P+ C C KAFT + +L H + HTGE P
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 7e-11
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE P++C C K+FT + +L H + HTGE P
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 7e-10
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ C C K+FT + ++ H++ HTGE P
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 7e-09
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHC 81
TGE P+RC C K FT + +L H + HTGE P
Sbjct: 7 GTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C +CGKAF + NL HQ+ H ++P
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTG----EKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C C + FT + +L H + H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C CGK F+ + + H HTGE P
Sbjct: 4 GSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C C K F D+ +L +H++ HT
Sbjct: 3 SGSSGTG----EKPYRCAECGKAFTDRSNLFTHQKIHT 36
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 5e-11
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
+GE P+ C C K F++K L H R HTGE P +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+GE P+ CN C K+F++K + H+R HTGE P
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 54.8 bits (133), Expect = 2e-10
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+GE P+ C C K+F++K L+ H R HTGE P
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 9e-10
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+GE P+ C+ C KTF++K L H R HTGE P +
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C +CGK F K L HQR+H ++P
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTG----EKPSGP 43
Score = 38.7 bits (91), Expect = 9e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE P+ C C +TF++K L H R H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 37.9 bits (89), Expect = 1e-04
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK FS+K H HTGE P
Sbjct: 4 GSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 36.4 bits (85), Expect = 5e-04
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K F K L +H+R+HT
Sbjct: 3 SGSSGSG----EKPYGCNECGKTFSQKSILSAHQRTHT 36
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.9 bits (136), Expect = 6e-11
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C K FT+ HLV H HTGE P +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 2e-10
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+ TGE P+KC C K FT+ HL H HTGE P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 53.6 bits (130), Expect = 5e-10
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE P+ CN C K FT+ H+V H HTGE P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 2e-09
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TGE P++C+ C K FT+ HLV H HTGE P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 38.2 bits (90), Expect = 1e-04
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE P+ C C + FT+ HL RH H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 37.8 bits (89), Expect = 2e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C +CGK F +L+ H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK F++ H H HTGE P
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K F HLV HR HT
Sbjct: 3 SGSSGTG----EKPYKCNECGKVFTQNSHLVRHRGIHT 36
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 6e-11
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE + C C KAF +K L H R H GE P +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE ++C+ C K+F +K L+ H R H GE P
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE + C+ C K+F +K + H+R H GE P
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 51.8 bits (125), Expect = 2e-09
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE + C C K F +K L H R H GE P +
Sbjct: 7 GTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 42.1 bits (100), Expect = 4e-06
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 208 EHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + Y C++CGKAF K L HQR H+ ++P
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRG----EKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE + C C + F +K L H R H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + + C CGK F +K H H GE P
Sbjct: 4 GSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S +R Y C C K FI K L H+R H
Sbjct: 3 SGSSGTG----ERHYECSECGKAFIQKSTLSMHQRIHR 36
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 6e-11
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 96 YHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C K FT+ HL H R HTG P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE P+KC C K FT+ HL H R HTG P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 52.9 bits (128), Expect = 7e-10
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ CN C K FT+ H+ H R HTG P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 52.1 bits (126), Expect = 2e-09
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P++C+ C K FT+ HL H R HTG P +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C C + FT+ HL RH R H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK F++ H H HTG P
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 36.3 bits (85), Expect = 6e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C +CGK F +L H+R H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 34.0 bits (79), Expect = 0.003
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K F HL HRR HT
Sbjct: 3 SGSSGTG----EKPYKCNECGKVFTQNSHLARHRRVHT 36
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 6e-11
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C KAF +L H HTGE P +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 9e-11
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE P+KC C K+F +LT H HTGE P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 1e-09
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ CN C K+F ++ H+ HTGE P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 41 HVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P++C+ C K F +L H HTGE P +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C +CGKAFR NL HQ H ++P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTG----EKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK F + H + HTGE P
Sbjct: 4 GSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C C + F +L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K F +L +H+ HT
Sbjct: 3 SGSSGTG----EKPYKCNECGKAFRAHSNLTTHQVIHT 36
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 7e-11
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TG+ P+ C C K FT+ HL H HTGE P +
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 54.4 bits (132), Expect = 2e-10
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TG+ P+KC C K FT+ HL H HTGE P
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 8e-10
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TG+ P+ CN C K FT+ H+ H HTGE P
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 2e-09
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TG+ P++C+ C K FT+ HL H HTGE P +
Sbjct: 7 GTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TG+ P+ C C + FT+ HL RH H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 37.9 bits (89), Expect = 2e-04
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S P+ C+ CGK F++ H H HTGE P
Sbjct: 4 GSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S PY C +CGK F +L H+ H ++P
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTG----EKPSGP 43
Score = 33.6 bits (78), Expect = 0.005
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S +PY C+ C K F HL HR HT
Sbjct: 3 SGSSGTG----KKPYKCNECGKVFTQNSHLARHRGIHT 36
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 7e-11
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C KAF+ + L H HTG+ P +
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE P++C C K+F+ + LT H HTG+ P
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 53.7 bits (130), Expect = 3e-10
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ CN C K+F+ + + H+ HTG+ P
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 51.8 bits (125), Expect = 2e-09
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P+ C+ C K F+ + L H HTG+ P +
Sbjct: 7 GTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C CGKAF ++ +L HQ H +P
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTG----KKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK FS + H HTG+ P
Sbjct: 5 SSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 36.4 bits (85), Expect = 5e-04
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C C + F+ + L H H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K F + L +H+ HT
Sbjct: 3 SGSSGTG----EKPYECNQCGKAFSVRSSLTTHQAIHT 36
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 8e-11
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C K FT+ HL H HTGE P +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 54.0 bits (131), Expect = 3e-10
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE P+KC C K FT+ HL H HTGE P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 8e-10
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ CN C K FT+ H+ H HTGE P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 51.7 bits (125), Expect = 2e-09
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P++C+ C K FT+ HL H HTGE P +
Sbjct: 7 GTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C C + FT+ HL RH H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK F++ H H HTGE P
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C +CGK F +L H+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 33.6 bits (78), Expect = 0.005
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K F HL HR HT
Sbjct: 3 SGSSGTG----EKPYKCNECGKVFTQNSHLARHRGIHT 36
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 8e-11
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TG P+ C C KAF++ L H R HTGE P +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 53.7 bits (130), Expect = 4e-10
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TG P++C C K+F++ L H R HTGE P
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 7e-10
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TG P+ CN C K+F++ + H+R HTGE P
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 3e-09
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TG P++C+ C K F++ L H R HTGE P +
Sbjct: 7 GTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 4e-05
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S PY C +CGKAF L HQR H ++P
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTG----EKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S P+ C+ CGK FS+ H HTGE P
Sbjct: 4 GSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TG P+ C C + F++ L RH R H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S +PY C+ C K F L H+R HT
Sbjct: 3 SGSSGTG----GKPYQCNECGKAFSQTSKLARHQRVHT 36
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 55.7 bits (135), Expect = 8e-11
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C+ C K+F L+ H R H+GE P +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE P+ C C KSF L H R H+GE P
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 53.0 bits (128), Expect = 7e-10
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P++C C KSF ++ H+R H+GE P
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 51.8 bits (125), Expect = 2e-09
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 41 HVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P+ C C K+F L+ H R H+GE P +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 42.2 bits (100), Expect = 4e-06
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C +CGK+FR L+ HQR H ++P
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSG----EKPSGP 43
Score = 37.2 bits (87), Expect = 2e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P++C+ C ++F L +H R H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 36.8 bits (86), Expect = 4e-04
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P++C CGK F H H+GE P
Sbjct: 4 GSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.005
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY+C C K F L+ H+R H+
Sbjct: 3 SGSSGTG----EKPYNCKECGKSFRWASCLLKHQRVHS 36
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 8e-11
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P C+ C K+F+ L+ H R HTGE+P +
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 54.5 bits (132), Expect = 2e-10
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE PH C C KSF+ ++ H+R HTGE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 54.1 bits (131), Expect = 3e-10
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE PH+C C KSF+ L H R HTGE+P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 52.2 bits (126), Expect = 2e-09
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE PH C C K+F+ L+ H R HTGE+P +
Sbjct: 7 GTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + P+ C +CGK+F L+ HQR H + P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTG----ENPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE PH C C ++F+ L H R H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 36.7 bits (86), Expect = 4e-04
Identities = 14/40 (35%), Positives = 15/40 (37%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P C CGK FS H HTGE P
Sbjct: 4 GSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++P+ C C K F L+ H+R HT
Sbjct: 3 SGSSGTG----EKPHECRECGKSFSFNSQLIVHQRIHT 36
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 55.6 bits (135), Expect = 9e-11
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
G P+ C C K+F+ K L+ H R HT E P +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 54.9 bits (133), Expect = 1e-10
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
G +P+KC+ C KSF+ K L H R HT E P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 53.7 bits (130), Expect = 5e-10
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
G +P+ C+ C KSF+ K ++ H+R HT E P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 52.2 bits (126), Expect = 1e-09
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
G P++C C K+F+ K L+ H R HT E P +
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S PY C+ C K+F K L+ HQR H + ++P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTR----EKPSGP 43
Score = 39.1 bits (92), Expect = 6e-05
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
G +P+ C C+++F+ K L H R H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S +P+ C C K FS K H HT E P
Sbjct: 4 GSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S PY C C K F K L+ H+R HT
Sbjct: 3 SGSSGAG----VNPYKCSQCEKSFSGKLRLLVHQRMHT 36
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 9e-11
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C K F +L H R HTGE P +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+ TGE P+KC C K F +L+ H R HTGE P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 5e-10
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE P+ CN C K F ++ H+R HTGE P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 51.7 bits (125), Expect = 2e-09
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TGE P++C+ C K F +L H R HTGE P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 4e-05
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C +CGK FR L HQR H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE P+ C C + F +L RH R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK F + H HTGE P
Sbjct: 4 GSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K F +L H+R HT
Sbjct: 3 SGSSGTG----EKPYKCNECGKVFRHNSYLSRHQRIHT 36
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 9e-11
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C KAF++ L H R HTGE P +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 2e-10
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+ TGE P+KC C K+F++ L H R HTGE P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 5e-10
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE P+ CN C K+F++ + H+R HTGE P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TGE P++C+ C K F++ L H R HTGE P +
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 4e-05
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C +CGKAF L HQR H ++P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTG----EKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE P+ C C + F++ L RH R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C+ CGK FS+ H HTGE P
Sbjct: 4 GSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C K F L H+R HT
Sbjct: 3 SGSSGTG----EKPYKCNECGKAFSQTSKLARHQRIHT 36
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 9e-11
Identities = 18/42 (42%), Positives = 20/42 (47%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE PF C C KAF+ L H R HTGE P +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 54.4 bits (132), Expect = 2e-10
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE P C C K+F+ L H R HTGE P
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 1e-09
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P C C K+F+ + H R HTGE P
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 4e-08
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 41 HVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P C C K F+ L H R HTGE P +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + P+ C DCGKAF L H+R H ++P
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG----EKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + PF C CGK FS H HTGE P
Sbjct: 4 GSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P C C + F+ L +H R H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++P+ C C K F D L HRR HT
Sbjct: 3 SGSSGTG----EKPFDCIDCGKAFSDHIGLNQHRRIHT 36
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 101 HTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
+GE PF C C KAF+ K +L+ H + H E P +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 55.2 bits (134), Expect = 1e-10
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 129 HTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+GE P C+ C K+F+ K +L H + H E P
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 54.8 bits (133), Expect = 2e-10
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+GE P C C K F+ K +L+ H + H E P +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 54.5 bits (132), Expect = 2e-10
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 73 HTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+GE P C+ C K+F+ K +++ H++ H E P
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 41.4 bits (98), Expect = 9e-06
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
P+ C+ C KAF K L+ HQ++H + ++P
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQTHAE----EKPSGP 41
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 157 HTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE P C C++ F+ K +L H + H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
PF C C K FS K + H H E P
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHT 274
+P+ C C K F K +L+ H+++H
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHA 34
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 1e-10
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
+G+ P+ C+ C K F + HL H R HTGE
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 54.5 bits (132), Expect = 2e-10
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+G+ P++C C K+F + HL H R HTGE
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 53.7 bits (130), Expect = 4e-10
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+G+ P+ C C K+F + H+ H+R HTGE
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+G+ P+ C C KTF + HL H R HTGE +
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 38.7 bits (91), Expect = 7e-05
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S PY C +C K F G+L H+R H +R
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTG----ERSSGP 43
Score = 38.7 bits (91), Expect = 8e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+G+ P+ C+ C +TF + HL +H R H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S P+ C C K F + H H HTGE
Sbjct: 4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S +PY C C K FI GHL H+R HT
Sbjct: 3 SGSSGSG----KKPYECKECRKTFIQIGHLNQHKRVHT 36
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 1e-10
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C+ C KAF L H R HTGE P +
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE P+ C C K+F L H R HTGE P
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 1e-09
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P++C C K+F + H+R HTGE P
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P+ C+ C K F L H R HTGE P +
Sbjct: 7 GTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 5e-05
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C +CGKAF L HQR H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P++CE C + F L+ H R H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 36.7 bits (86), Expect = 4e-04
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P++C+ CGK F + H HTGE P
Sbjct: 4 GSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY+C+ C K FI L H+R HT
Sbjct: 3 SGSSGTG----EKPYNCEECGKAFIHDSQLQEHQRIHT 36
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 55.9 bits (134), Expect = 1e-10
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 109 CQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGE 160
C+ C + L H+R HT P+ CTYC SF K +LT H++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 54.0 bits (129), Expect = 4e-10
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 51 HRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
+ C+ C + L H+R HT P+HC YC SF K ++ H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 54.0 bits (129), Expect = 5e-10
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGE 76
+ C+ CG + K H+ HT P+ C YC +F K +L H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 53.2 bits (127), Expect = 8e-10
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 81 CNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGE 132
C C + + H R HT P+ C YC +F K +L H++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 52.4 bits (125), Expect = 1e-09
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 135 HKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ C C + L HIR HT P+ C +C+ +F K +L +H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 47.0 bits (111), Expect = 1e-07
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 219 YVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
Y+C +CG + L H R+H RPYHC C F KG+L H +S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTD----VRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 37.4 bits (86), Expect = 3e-04
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 193 CIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
C C + L +H+R+H PY CT C +F+ KGNL H +S
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 36.6 bits (84), Expect = 7e-04
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 165 CEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSH 213
CE C + LK+H+R H ++C C F K +L +H++S
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 34.7 bits (79), Expect = 0.003
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 7 PPTIHAERRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGE 48
P + R+H P+HC C F K + H+
Sbjct: 14 PSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ + H+C C + FT K HL H R HTGE P
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 4e-10
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ + H C+ C + FT K H+ H+R HTGE P
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 7e-10
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
+ C C + FT K HL H R HTGE P +
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 51.4 bits (124), Expect = 3e-09
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHC 81
+ H+C C + FT K HL H R HTGE P
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 1e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ + H C C R FT K HL +H R H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 41.0 bits (97), Expect = 1e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + C +CG+ F LK +L HQR H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + C CG+ F+ K H H HTGE P
Sbjct: 4 GSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.004
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 240 SHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S + + C C + F K HL H+R HT
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT 36
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 55.2 bits (134), Expect = 1e-10
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
GE + C+ C F++ L H H GE P +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
GE KC C F++ L H H GE P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 52.2 bits (126), Expect = 1e-09
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
GE C C F++ + H+ H GE P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
GE +C C F++ L H H GE P +
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 41.0 bits (97), Expect = 1e-05
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + + C +C F +L HQ H ++P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVG----EKPSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
GE C CD F++ L+ H H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + + + C C FS+ + H H GE P
Sbjct: 5 SSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++ + C C F L H+ H
Sbjct: 3 SGSSGMG----EKTWKCRECDMCFSQASSLRLHQNVHV 36
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.3 bits (134), Expect = 1e-10
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+ TGE P+KC C K+F T H R HTG+ P
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 54.9 bits (133), Expect = 1e-10
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C KAF H R HTG+ P +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 53.4 bits (129), Expect = 5e-10
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TGE P+ C C K+F H+R HTG+ P
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TGE P++C C K F H R HTG+ P +
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 40.3 bits (95), Expect = 2e-05
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C +CGKAF + HQR H RP
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTG----QRPSGP 43
Score = 37.2 bits (87), Expect = 3e-04
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C CGK F H HTG+ P
Sbjct: 4 GSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 36.8 bits (86), Expect = 3e-04
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TGE P+ C C + F +H R H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 34.1 bits (79), Expect = 0.004
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C C K F D H+R HT
Sbjct: 3 SGSSGTG----EKPYKCMECGKAFGDNSSCTQHQRLHT 36
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 1e-10
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C K+F L H R HTGE P +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 19/41 (46%), Positives = 20/41 (48%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE P+KC C KSF LT H R HTGE P
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 6e-10
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQ 110
TGE P+ C+ C KSF + H+R HTGE P
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 52.1 bits (126), Expect = 2e-09
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P++CD C K+F L H R HTGE P +
Sbjct: 7 GTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 2e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C C K+FR +L HQR H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ CD+C K F H HTGE P
Sbjct: 4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C+ C ++F L H R H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY CD+C K F L H+R HT
Sbjct: 3 SGSSGTG----EKPYKCDVCHKSFRYGSSLTVHQRIHT 36
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 1e-10
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C KAF+ + L H R H+G+ P +
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 53.7 bits (130), Expect = 3e-10
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE P++C+ C K+F+ ++ L+ H R H+G+ P
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 53.3 bits (129), Expect = 6e-10
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ C+ C K+F+ + + H+R H+G+ P
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P+ C C K F+ ++ L H R H+G+ P +
Sbjct: 7 GTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 41.3 bits (98), Expect = 1e-05
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C+ CGKAF + +L HQR H +P
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSG----KKPSGP 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C C + F+ ++ L H R H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 36.3 bits (85), Expect = 6e-04
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C +CGK FS + H H+G+ P
Sbjct: 4 GSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C +C K F + L H+R H+
Sbjct: 3 SGSSGTG----EKPYECSVCGKAFSHRQSLSVHQRIHS 36
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 54.8 bits (133), Expect = 1e-10
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHS 164
GE P+KC C F + HL H+ HTG P S
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 51.8 bits (125), Expect = 2e-09
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPH 135
GE P+ C+ C F + HL HV HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 49.8 bits (120), Expect = 8e-09
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 41 HVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPH 79
GE P++C+ C F + HL HV HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 49.4 bits (119), Expect = 1e-08
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPF 107
GE P+ C C F + H+ H HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
GE P+ CE C F + HL+ H+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 38.7 bits (91), Expect = 8e-05
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPH 51
S + P+ C+ CG F + H + HV+ HTG P
Sbjct: 3 SGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C CG F +L H H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY C+ C F+ HL +H HT
Sbjct: 2 SSGSSGG----EKPYKCETCGARFVQVAHLRAHVLIHT 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 2e-10
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
TG P+ C C KAF+ L H HTGE P
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 54.8 bits (133), Expect = 2e-10
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+ TG P+ C C K+F+ LT H HTGE P
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 1e-09
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ TG P+ CN C K+F+ + H+ HTGE P
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 4e-09
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ TG P+ C+ C K F+ L H HTGE P +
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 40.2 bits (95), Expect = 3e-05
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S PY+C +CGKAF + +L HQ H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 36.7 bits (86), Expect = 4e-04
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S P+ C+ CGK FS H + HTGE P
Sbjct: 4 GSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ TG P+ C C + F+ L H H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S +PY C+ C K F L +H+ HT
Sbjct: 3 SGSSGTG----VKPYMCNECGKAFSVYSSLTTHQVIHT 36
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.9 bits (133), Expect = 2e-10
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
GE P++C+ C KSF+ LT H HT E P
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 54.9 bits (133), Expect = 2e-10
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
GE P+ C C K+F+ L H HT E P +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 51.4 bits (124), Expect = 2e-09
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
GE P++C C K+F+ L H HT E P +
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 51.4 bits (124), Expect = 3e-09
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
GE P+ C+ C KSF+ + H HT E P
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 38.7 bits (91), Expect = 8e-05
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C++CGK+F L H +H + ++P
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTR----EKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ C CGK FS H + HT E P
Sbjct: 4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 36.8 bits (86), Expect = 4e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
GE P+ C C ++F+ L +H H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S + ++PY C C K F L H +HT
Sbjct: 3 SGSSGEG----EKPYQCSECGKSFSGSYRLTQHWITHT 36
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 2e-10
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
TGE P+ C C KAF+ L H R H+GE P +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
TGE P++C C K+F+ LT H R H+GE P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 52.1 bits (126), Expect = 1e-09
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P+ C+ C K+F+ + H+R H+GE P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 51.0 bits (123), Expect = 4e-09
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
TGE P+ CD C K F+ L H R H+GE P +
Sbjct: 7 GTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S + PY C C KAF +L HQR H ++P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSG----EKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + P+ CD+C K FS H H+GE P
Sbjct: 4 GSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 35.9 bits (84), Expect = 7e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P+ C+ C + F+ L +H R H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 33.6 bits (78), Expect = 0.004
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY CD+C K F L H+R H+
Sbjct: 3 SGSSGTG----EKPYECDVCRKAFSHHASLTQHQRVHS 36
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 54.5 bits (132), Expect = 2e-10
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRR-HTGESPHKCT 138
TG+ P+ C C KAF + L+ H R HTGE P +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 52.2 bits (126), Expect = 1e-09
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQ-HTGESPHSC 165
+ TG+ P++C C K+F + L H R HTGE P
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 52.2 bits (126), Expect = 1e-09
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQ-HTGETPFPC 109
+ TG+ P+ C C K+F + ++ H R HTGE P
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 49.9 bits (120), Expect = 9e-09
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQ-HTGESPHHCN 82
+ TG+ P+ C C K F + L+ H R HTGE P +
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 39.9 bits (94), Expect = 3e-05
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHC 253
S PY C +CGKAF +L+ H R + G ++P
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTG---EKPSGP 44
Score = 36.4 bits (85), Expect = 6e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQ 184
+ TG+ P+ C C + F + L RH R
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRY 34
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHV-MWHTGETPHRC 53
S P+ C CGK F + H +HTGE P
Sbjct: 4 GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 32.5 bits (75), Expect = 0.012
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRS-HT 274
S +PY C C K FI L+ H R HT
Sbjct: 3 SGSSGTG----KKPYECIECGKAFIQNTSLIRHWRYYHT 37
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 54.1 bits (131), Expect = 3e-10
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+ GE H+C+ C K F + + H R HTGE P
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 6e-10
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
GE C C K F + + + H R HTGE P +
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 1e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+ GE H C+ C K F + + + H R HTGE P
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+ GE HRC C K F + + + H R HTGE P +
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + + C+DCGK F N + H+R H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ GE H C C + F + + +H R H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S + C CGK+F + ++ H HTGE P
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 36.4 bits (85), Expect = 5e-04
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S +R + C C K F+ + + HRR HT
Sbjct: 3 SGSSGHG----ERGHRCSDCGKFFLQASNFIQHRRIHT 36
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 53.7 bits (130), Expect = 4e-10
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHS 164
GE P++C C K+F++K L HIR HTG P S
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 52.6 bits (127), Expect = 1e-09
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPF 107
GE P+ C+ C K+F++K ++ H R HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 52.2 bits (126), Expect = 1e-09
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPH 135
GE P+ C C KAF++K L+ H+R HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 49.1 bits (118), Expect = 2e-08
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 41 HVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPH 79
GE P+RCD C K F++K L+ H+R HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 41.0 bits (97), Expect = 1e-05
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C CGKAF KG+L+ H R H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 38.7 bits (91), Expect = 7e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
GE P+ C+ C + F++K L H+R H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 37.2 bits (87), Expect = 2e-04
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 12 AERRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPH 51
S + P+ CD CGK FS+K H+ HTG P
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 37.2 bits (87), Expect = 3e-04
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++PY CD C K F KG L+ H R HT
Sbjct: 2 SSGSSGG----EKPYRCDQCGKAFSQKGSLIVHIRVHT 35
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 53.3 bits (129), Expect = 4e-10
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHS 164
GE P+ C C F + L +H+R HTG P S
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 51.7 bits (125), Expect = 2e-09
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPH 135
GE P+PC+ C F L +H+R HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 48.6 bits (117), Expect = 2e-08
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPF 107
GE P+ C C F + H R HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 41 HVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPH 79
GE P+ C+ C F + L +H+R HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 41.3 bits (98), Expect = 8e-06
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
GE P+ CE C F + LK HLR H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 40.9 bits (97), Expect = 1e-05
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 12 AERRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPH 51
S + P+ C+ICG F K+H+ HTG P
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY C CG FR L H R H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 33.6 bits (78), Expect = 0.005
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHT 274
+PY C++C F L SH R HT
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHT 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.4 bits (129), Expect = 5e-10
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
TGE PF C+ C F+ L H+R H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 53.0 bits (128), Expect = 8e-10
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
TGE P +C C +F+ L H+R H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 49.5 bits (119), Expect = 1e-08
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
TGE P C C +F+ + H R H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 49.1 bits (118), Expect = 1e-08
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHC 81
TGE P +C C F+ L H+R H P
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 39.5 bits (93), Expect = 4e-05
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCD 254
S + P+ C +CG F +L H RSH++ P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER----TDPSGPS 44
Score = 39.1 bits (92), Expect = 7e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
TGE P C+ C F+ L +HLR H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 36.0 bits (84), Expect = 8e-04
Identities = 11/40 (27%), Positives = 13/40 (32%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCD 54
S + PF C CG FS H+ H P
Sbjct: 5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 31.8 bits (73), Expect = 0.025
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++P+ C C +F L H RSH
Sbjct: 3 SGSSGTG----EKPFQCKECGMNFSWSCSLFKHLRSHE 36
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.2 bits (126), Expect = 1e-09
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
T + C C K+FTR HLT H + HT +S S
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 52.2 bits (126), Expect = 1e-09
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
T + C C KAFTR HL H + HT +S
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 50.7 bits (122), Expect = 4e-09
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
T ++CN C K+FTR H+ H++ HT ++
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 46.8 bits (112), Expect = 1e-07
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHC 81
T + C+ C K FTR HL H + HT +S
Sbjct: 7 GTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 40.3 bits (95), Expect = 2e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
T ++C C + FTR HL RH + H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 208 EHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S Y C +CGKAF +L HQ+ H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 237 HQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S + Y+C+ C K F HL H++ HT
Sbjct: 3 SGSSG----TDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 32.9 bits (76), Expect = 0.009
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
S ++C+ CGK F+R H H HT ++
Sbjct: 5 SSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 53.1 bits (127), Expect = 1e-09
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 7/67 (10%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQ 156
++ H G+ C C F R+ + C C K ++ L
Sbjct: 9 RQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALNKDEGN 61
Query: 157 HTGESPH 163
+G+
Sbjct: 62 ESGKKTS 68
Score = 50.0 bits (119), Expect = 2e-08
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 7/71 (9%)
Query: 37 HYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVY 96
H G+ +C C F R+ + C C K ++ +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALNK 57
Query: 97 HERQHTGETPF 107
E +G+
Sbjct: 58 DEGNESGKKTS 68
Score = 48.1 bits (114), Expect = 8e-08
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 7/65 (10%)
Query: 121 HLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKR 180
+ H G+ KC+ C F R+ + CE C + ++ L +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALNK 57
Query: 181 HLRQH 185
Sbjct: 58 DEGNE 62
Score = 44.7 bits (105), Expect = 1e-06
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 7 PPTIHAERRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHL 66
+ ++ H+ D C CG F R+ + C+ C K ++ L
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRS-------TLSRRKTPMCEKCRKDSCQEAAL 55
Query: 67 VNHVRQHTGESPH 79
+G+
Sbjct: 56 NKDEGNESGKKTS 68
Score = 42.3 bits (99), Expect = 8e-06
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 11/71 (15%)
Query: 204 ASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDK 263
S + + H D C+ CG F + + + C+ C KD +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIF-----------IRRSTLSRRKTPMCEKCRKDSCQE 52
Query: 264 GHLVSHRRSHT 274
L + +
Sbjct: 53 AALNKDEGNES 63
Score = 37.7 bits (87), Expect = 3e-04
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 7/71 (9%)
Query: 149 HLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLE 208
+ H G+ C C F R+ L R C C + +A+L +
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNK 57
Query: 209 HLRSHPRDCPY 219
+
Sbjct: 58 DEGNESGKKTS 68
Score = 36.9 bits (85), Expect = 6e-04
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 177 HLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMF 236
+ + HL C C F +++L +C C K + L
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK-------TPMCEKCRKDSCQEAALNK 57
Query: 237 HQRSH 241
+ +
Sbjct: 58 DEGNE 62
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 51.4 bits (124), Expect = 3e-09
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 127 RRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHS 164
+G+ ++C C KSF +K LT H R HTG P S
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 49.5 bits (119), Expect = 1e-08
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 71 RQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPF 107
+G+ + C C KSF +K + HER HTG P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 49.1 bits (118), Expect = 2e-08
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 98 ERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPH 135
+G+ + CQ C K+F +K L H R HTG P
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 48.0 bits (115), Expect = 4e-08
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPH 79
+G+ + C C K+F +K L H R HTG P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 41.4 bits (98), Expect = 8e-06
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
Y C +CGK+FR KG+L H+R H
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIH 33
Score = 34.9 bits (81), Expect = 0.002
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 155 RQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+G+ + C+ C ++F +K L H R H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 33.7 bits (78), Expect = 0.005
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHT 274
R Y C C K F KG L H R HT
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHT 34
Score = 33.7 bits (78), Expect = 0.005
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGETPH 51
+ C CGK F +K H HTG P
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTGSGPS 39
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 50.4 bits (121), Expect = 6e-09
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHS 164
GE+P+ C C KSFT++ L H R + P S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 49.2 bits (118), Expect = 1e-08
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHK 136
GETP+ C C K+FT++ L H R + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 49.2 bits (118), Expect = 1e-08
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPF 107
GE+P+ C C KSFT++ + H+R + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 47.7 bits (114), Expect = 4e-08
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPH 79
GETP+ C C K+FT++ L H R + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 43.4 bits (103), Expect = 2e-06
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + PY+C CGK+F +G+L HQRS
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 36.5 bits (85), Expect = 4e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
GE+P+ C C ++FT++ L H R
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 35.7 bits (83), Expect = 8e-04
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHT 274
PY C C K F +G L H+RS +
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCS 35
Score = 34.9 bits (81), Expect = 0.002
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPH 51
S ++P+ C CGK F+++ H + P
Sbjct: 3 SGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 50.4 bits (121), Expect = 6e-09
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 129 HTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSC 165
+GE P+ C C ++F+ L H + HT +S S
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 48.9 bits (117), Expect = 2e-08
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 101 HTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKC 137
+GE P+ C C + F+ + LV H + HT +S
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 48.5 bits (116), Expect = 2e-08
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHC 81
+GE P+ C C +TF+ LV H + HT +S
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 46.9 bits (112), Expect = 8e-08
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 73 HTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+GE P+ C C ++F+ + +V H++ HT ++
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 37.7 bits (88), Expect = 2e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 157 HTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE P+SC C TF+ L +H + H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 36.9 bits (86), Expect = 3e-04
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 211 RSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
+ PY C +C + F L+ HQ+ H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 35.8 bits (83), Expect = 7e-04
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRC 53
+ P+ C C + FS + H HT ++
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 33.8 bits (78), Expect = 0.004
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHT 274
++PY C C + F D LV H++ HT
Sbjct: 8 EKPYSCAECKETFSDNNRLVQHQKMHT 34
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 1e-08
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCE 166
+GE H C C K+F L H R H GE
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 109
+GE H C+ C K+F + H+R H GE
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 46.4 bits (111), Expect = 1e-07
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCT 138
+GE C C K F L H R H GE +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 46.4 bits (111), Expect = 1e-07
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCN 82
+GE H CD C K F L H R H GE +
Sbjct: 7 GSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 40.3 bits (95), Expect = 2e-05
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + + C +CGK F L HQR H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 36.0 bits (84), Expect = 8e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE H+C+ C + F L+ H R H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 32.9 bits (76), Expect = 0.008
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 240 SHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S ++ + CD C K+F L H+R H
Sbjct: 2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
Score = 31.4 bits (72), Expect = 0.034
Identities = 11/41 (26%), Positives = 13/41 (31%)
Query: 14 RRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCD 54
S + CD CGK F + H H GE
Sbjct: 4 GSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 48.9 bits (117), Expect = 2e-08
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRH 129
R TG PF C C ++F+R DHL H +RH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 45.8 bits (109), Expect = 2e-07
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 125 HVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQH 157
R TG P +C C +SF+R +HL H ++H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 45.4 bits (108), Expect = 3e-07
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 153 HIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHL 186
R TG P C CDR+F+R +HL H ++H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 42.3 bits (100), Expect = 3e-06
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 69 HVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 101
R TG P C C +SF+R DH+ H ++H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 38.5 bits (90), Expect = 9e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 41 HVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQH 73
TG P +C C ++F+R +HL H ++H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.5 bits (77), Expect = 0.005
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWH 45
R PF C C + FSR DH H H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 29.2 bits (66), Expect = 0.17
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
R P+ C DC ++F +L H++ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.7 bits (62), Expect = 0.52
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSH 273
+P+ C C + F HL HR+ H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 50.7 bits (120), Expect = 3e-08
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 6/120 (5%)
Query: 66 LVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNH 125
++ H G + + R + +++ + P+ + +
Sbjct: 10 SKKYLSNHKGIF---IHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQ-LLDESSYLYR 65
Query: 126 VRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ S C C+ F+ L HIR E C C + FT + H+ +
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 49.5 bits (117), Expect = 9e-08
Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 6/106 (5%)
Query: 56 CAKTFTRKEHLVNHVRQHTGESPHHCN----YCAKSFTRKDHMVYHERQHTGETPFPCQY 111
T +E H + + +Y + F C
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 112 CPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQH 157
C F+ L H+R E C C K FT + +H+ +
Sbjct: 80 CLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 45.7 bits (107), Expect = 2e-06
Identities = 20/121 (16%), Positives = 33/121 (27%), Gaps = 6/121 (4%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQ 156
+ H G + R L +R + + +
Sbjct: 13 YLSNHKG---IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHN-PQLLDESSYLYRLLA 68
Query: 157 HTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRD 216
S C C F+ LK+H+R C +C + F S L+H+
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Query: 217 C 217
C
Sbjct: 127 C 127
Score = 42.6 bits (99), Expect = 2e-05
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 27 ICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAK 86
I + Y ++ + C C F+ L H+R E C C K
Sbjct: 51 IHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKK 108
Query: 87 SFTRKDHMVYHERQH 101
FT D + H +
Sbjct: 109 EFTSTDSALDHVCKK 123
Score = 42.2 bits (98), Expect = 3e-05
Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 10/125 (8%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLR 211
++ H G H ++ H ++ L + +I D++S L L
Sbjct: 12 KYLSNHKGIFIHVT----LEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL 67
Query: 212 SHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRR 271
+ +VC C F +L H R + C +C K+F + H
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYTE------HTKVCPVCKKEFTSTDSALDHVC 121
Query: 272 SHTNG 276
N
Sbjct: 122 KKHNI 126
Score = 40.7 bits (94), Expect = 1e-04
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 3 HVPPPPTIHAERRSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTR 62
+ + + S F C +C FS K H+ + E C C K FT
Sbjct: 55 QLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTS 112
Query: 63 KEHLVNHVRQH 73
+ ++HV +
Sbjct: 113 TDSALDHVCKK 123
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 47.5 bits (113), Expect = 6e-08
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPH 135
GE PF C C + FT++++LV H R H +S
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 46.0 bits (109), Expect = 2e-07
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 124 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHS 164
+ GE+P KC+ C + FT++ +L H R H +S S
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
Score = 44.1 bits (104), Expect = 1e-06
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 40 NHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPH 79
+ GE P +C C + FT++ +LV H R H +S
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 43.3 bits (102), Expect = 2e-06
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 68 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
+ GE+P C+ C + FT+++++V HER H ++
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 37.9 bits (88), Expect = 1e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 152 NHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+ GE+P C CDR FT++ +L +H R H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 34.8 bits (80), Expect = 0.002
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S + P+ C+ C + F + L+ H+R+H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 34.1 bits (78), Expect = 0.004
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 240 SHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHT 274
S + P+ C C + F + +LV H R+H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 33.7 bits (77), Expect = 0.005
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 16 SHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPH 51
S ++PF C C + F+++++ H H ++
Sbjct: 6 SGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 48.7 bits (115), Expect = 1e-07
Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 3/85 (3%)
Query: 97 HERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQ 156
+ + C+ C + +H R + C YC F E H
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEH-ES 63
Query: 157 HTGESPHSCEFCDRTFTRKEHLKRH 181
+C C RTF + RH
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 43.4 bits (101), Expect = 9e-06
Identities = 15/79 (18%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
Query: 75 GESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
+ + C C + HER C YC F + H
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH-ESKCEYKK 69
Query: 135 HKCTYCMKSFTRKEHLTNH 153
C CM++F + H
Sbjct: 70 LTCLECMRTFKSSFSIWRH 88
Score = 41.4 bits (96), Expect = 4e-05
Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 3/80 (3%)
Query: 19 TDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 78
+ C +C S +H C YC+ F E H
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEH-ESKCEYKK 69
Query: 79 HHCNYCAKSFTRKDHMVYHE 98
C C ++F + H+
Sbjct: 70 LTCLECMRTFKSSFSIWRHQ 89
Score = 40.7 bits (94), Expect = 6e-05
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Query: 47 GETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 106
+ ++C C + +H R + C YC+ F + HE + +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEHESKCEYK-K 69
Query: 107 FPCQYCPKAFTRKDHLVNHVRR 128
C C + F + H
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVE 91
Score = 39.1 bits (90), Expect = 2e-04
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Query: 159 GESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCP 218
+ + C C+ + H R + C C+ F EH S
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH-ESKCEYKK 69
Query: 219 YVCTDCGKAFRLKGNLMFHQRS 240
C +C + F+ ++ HQ
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVE 91
Score = 32.6 bits (73), Expect = 0.049
Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 7/82 (8%)
Query: 191 FNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRP 250
+ C +C + H R VC C F H+ + +
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHESKCE-----YKK 69
Query: 251 YHCDLCPKDFIDKGHLVSHRRS 272
C C + F + H+
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVE 91
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 46.1 bits (109), Expect = 2e-07
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 127 RRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFC 168
C C K F HL H H+GE P+S
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 44.9 bits (106), Expect = 6e-07
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCA 85
C+ C K F HL H H+GE P+ +
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 44.5 bits (105), Expect = 7e-07
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 71 RQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYC 112
C C K F H+ H+ H+GE P+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 42.2 bits (99), Expect = 5e-06
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 15 RSHITDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCA 57
S T C+ICGK F H H + H+GE P+ +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 42.2 bits (99), Expect = 5e-06
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 99 RQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYC 140
C+ C K F HL H H+GE P+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 35.7 bits (82), Expect = 0.001
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 155 RQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+CE C + F HL RH H
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 33.8 bits (77), Expect = 0.006
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 211 RSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLC 256
S C CGK FR +L H+ SH ++PY
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSG----EKPYSSGPS 46
Score = 33.4 bits (76), Expect = 0.008
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 240 SHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTN 275
S + C++C K F D HL H+ SH+
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSG 37
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 40.4 bits (95), Expect = 2e-05
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGE 160
C C ++F R+EHL H R HT E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 40.0 bits (94), Expect = 2e-05
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQH 185
CE C R F R+EHLKRH R H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSH 25
Score = 38.8 bits (91), Expect = 5e-05
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGE 76
C+ C + F R+EHL H R HT E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 37.7 bits (88), Expect = 2e-04
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGE 132
F C+ C +AF R++HL H R HT E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 36.1 bits (84), Expect = 5e-04
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGE 104
C C ++F R++H+ H R HT E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 34.6 bits (80), Expect = 0.002
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGE 48
F C++C + F+R++H K H HT E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 29.6 bits (67), Expect = 0.10
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHTN 275
R + C++C + F + HL H RSHTN
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 26.5 bits (59), Expect = 1.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSHQK 243
+VC C +AF + +L H RSH
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTN 27
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 37.6 bits (88), Expect = 2e-04
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 106 PFPCQY--CPKAFTRKDHLVNHVRRHTGE 132
PF C + C K FTR D L H R HTGE
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 36.8 bits (86), Expect = 3e-04
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 134 PHKCTY--CMKSFTRKEHLTNHIRQHTGE 160
P CT+ C K FTR + L H R HTGE
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 34.5 bits (80), Expect = 0.002
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 78 PHHCNY--CAKSFTRKDHMVYHERQHTGE 104
P C + C K FTR D + H+R HTGE
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 34.1 bits (79), Expect = 0.002
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 50 PHRCDY--CAKTFTRKEHLVNHVRQHTGE 76
P C + C K FTR + L H R HTGE
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 33.4 bits (77), Expect = 0.004
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 162 PHSC--EFCDRTFTRKEHLKRHLRQH 185
P C +C + FTR + L+RH R H
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 30.7 bits (70), Expect = 0.038
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 22 PFHCDI--CGKYFSRKDHYKNHVMWHTGE 48
PF C CGK F+R D + H HTGE
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 26.0 bits (58), Expect = 1.9
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 249 RPYHCD--LCPKDFIDKGHLVSHRRSHTN 275
RP+ C C K F L H+R+HT
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG 29
Score = 25.6 bits (57), Expect = 2.3
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 218 PYVCT--DCGKAFRLKGNLMFHQRSH 241
P++CT CGK F L H+R+H
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTH 27
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 36.2 bits (84), Expect = 6e-04
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 46 TGETPHRCDY--CAKTFTRKEHLVNHVRQHTGE 76
+ H C C K + + HL H+R HTGE
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 35.4 bits (82), Expect = 0.001
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 130 TGESPHKCTY--CMKSFTRKEHLTNHIRQHTGE 160
+ H C C K + + HL H+R HTGE
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 32.7 bits (75), Expect = 0.011
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 102 TGETPFPCQY--CPKAFTRKDHLVNHVRRHTGE 132
+ C C K + + HL H+R HTGE
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 31.6 bits (72), Expect = 0.021
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 74 TGESPHHCNY--CAKSFTRKDHMVYHERQHTGE 104
+ H C+ C K + + H+ H R HTGE
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 30.8 bits (70), Expect = 0.043
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 22 PFHCDI--CGKYFSRKDHYKNHVMWHTGE 48
C I CGK + + H + H+ WHTGE
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 30.4 bits (69), Expect = 0.061
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 158 TGESPHSCEF--CDRTFTRKEHLKRHLRQH 185
+ H C C + + + HL+ HLR H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 26.2 bits (58), Expect = 2.1
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 249 RPYHCDL--CPKDFIDKGHLVSHRRSHT 274
+ + C + C K + HL +H R HT
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHT 34
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 40.6 bits (94), Expect = 7e-04
Identities = 6/60 (10%), Positives = 14/60 (23%)
Query: 98 ERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQH 157
+ + ++ V + ++C C L H+ H
Sbjct: 144 GSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 38.7 bits (89), Expect = 0.003
Identities = 9/62 (14%), Positives = 15/62 (24%)
Query: 183 RQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQ 242
P S + + + + + Y C C +L H SH
Sbjct: 145 SNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Query: 243 KG 244
Sbjct: 205 LH 206
Score = 35.6 bits (81), Expect = 0.026
Identities = 6/59 (10%), Positives = 11/59 (18%)
Query: 127 RRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
S ++ + + C C L H+ H
Sbjct: 145 SNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 33.7 bits (76), Expect = 0.11
Identities = 5/53 (9%), Positives = 15/53 (28%)
Query: 49 TPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 101
+ + + ++ V + + C+ C+ + H H
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.5 bits (73), Expect = 0.23
Identities = 11/79 (13%), Positives = 18/79 (22%), Gaps = 10/79 (12%)
Query: 5 PPPPTIHAERRSHITD----------SPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCD 54
+ RS D S + S+ + ++C
Sbjct: 125 TGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCH 184
Query: 55 YCAKTFTRKEHLVNHVRQH 73
C+ L HV H
Sbjct: 185 VCSAVLFSPLDLDAHVASH 203
Score = 32.1 bits (72), Expect = 0.33
Identities = 9/59 (15%), Positives = 15/59 (25%)
Query: 155 RQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSH 213
S E ++ G + C +C+ L H+ SH
Sbjct: 145 SNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 30.2 bits (67), Expect = 1.2
Identities = 7/46 (15%), Positives = 12/46 (26%)
Query: 84 CAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRH 129
+ ++ V + + C C L HV H
Sbjct: 158 TSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 29.4 bits (65), Expect = 2.3
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 245 MPMDRPYHCDLCPKDFIDKGHLVSHRRSHTNG 276
Y C +C L +H SH
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.5 bits (81), Expect = 0.004
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 92 DHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVR-RHTG---ESPHKCTYCMKSFTRK 147
H ++++ E + C+YC + HV H S + C C R
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 148 EHLTNHI-RQHTGESPHSC 165
+ L+ H + H GE
Sbjct: 64 DALSEHNLKYHPGEENFKL 82
Score = 32.8 bits (74), Expect = 0.033
Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 5/80 (6%)
Query: 36 DHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVR-QHTG---ESPHHCNYCAKSFTRK 91
H+ ++ E + C YC HV +H S + C C R
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 92 DHMVYH-ERQHTGETPFPCQ 110
D + H + H GE F
Sbjct: 64 DALSEHNLKYHPGEENFKLT 83
Score = 29.0 bits (64), Expect = 0.78
Identities = 13/71 (18%), Positives = 21/71 (29%)
Query: 209 HLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRPYHCDLCPKDFIDKGHLVS 268
+ ++ + Y C C FH S + ++ Y C C L
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 269 HRRSHTNGITN 279
H + G N
Sbjct: 69 HNLKYHPGEEN 79
Score = 28.6 bits (63), Expect = 1.2
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 148 EHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPG----SEFNCIICTEPFNDK 203
H ++ + E + C++C H+ P S + C+ C
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 204 ASLLEH-LRSHPRDCPYVCT 222
+L EH L+ HP + + T
Sbjct: 64 DALSEHNLKYHPGEENFKLT 83
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 34.1 bits (77), Expect = 0.004
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 101 HTGETPFPCQYCPKAFTRKDHLVNHVRRHTG 131
+GE P+ C C F RKD + HVR H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 33.7 bits (76), Expect = 0.005
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 73 HTGESPHHCNYCAKSFTRKDHMVYHERQHTG 103
+GE P+ C C F RKD M YH R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 32.6 bits (73), Expect = 0.012
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 129 HTGESPHKCTYCMKSFTRKEHLTNHIRQHTG 159
+GE P+ C C F RK+ ++ H+R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 32.2 bits (72), Expect = 0.020
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 157 HTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+GE P+SC C F RK+ + H+R H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 31.4 bits (70), Expect = 0.038
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTG 75
+GE P+ C C F RK+ + HVR H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 28.7 bits (63), Expect = 0.29
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 17 HITDSPFHCDICGKYFSRKDHYKNHVMWHTG 47
+ P+ C +CG F RKD HV H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 27.6 bits (60), Expect = 0.87
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 213 HPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMDRP 250
+ PY C CG F+ K + +H RSH + P
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGP 42
Score = 27.2 bits (59), Expect = 1.2
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 244 GMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTNGITN 279
G ++PY C +C F K + H RSH +
Sbjct: 4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 33.7 bits (76), Expect = 0.005
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 103 GETPFPCQYCPKAFTRKDHLVNHVRRHTGES 133
+T CQ C K F L+ H H GES
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGES 39
Score = 31.8 bits (71), Expect = 0.022
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 47 GETPHRCDYCAKTFTRKEHLVNHVRQHTGES 77
+T C C K F L+ H H GES
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGES 39
Score = 29.1 bits (64), Expect = 0.24
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 75 GESPHHCNYCAKSFTRKDHMVYHERQHTGET 105
++ C C K F ++ H+ H GE+
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGES 39
Score = 28.3 bits (62), Expect = 0.44
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 131 GESPHKCTYCMKSFTRKEHLTNHIRQHTGES 161
++ +C C K F L H H GES
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGES 39
Score = 26.4 bits (57), Expect = 2.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
C +CGK FR L+ HQ H
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALH 35
Score = 25.6 bits (55), Expect = 3.5
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 21 SPFHCDICGKYFSRKDHYKNHVMWHTGET 49
+ C CGK F H H GE+
Sbjct: 11 TTSECQECGKIFRHSSLLIEHQALHAGES 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.006
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 31/100 (31%)
Query: 174 RKEHLKRHLRQ---HLPGSE------FN---CIICTEPFNDKASLLEHLRSHPRD--CPY 219
+E ++ ++ + HLP + N ++ + P L L R P
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP----PQSLYGLNLTLRKAKAP- 399
Query: 220 VCTDCGKAFRLKGNLMFHQR----SHQKGMPMDRPYHCDL 255
+ ++ R+ F +R S++ +P+ P+H L
Sbjct: 400 --SGLDQS-RIP----FSERKLKFSNR-FLPVASPFHSHL 431
Score = 28.5 bits (63), Expect = 4.3
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 238 QRSHQKGMPMD 248
Q S ++GM MD
Sbjct: 1624 QGSQEQGMGMD 1634
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 32.8 bits (74), Expect = 0.009
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGE 76
P +C C K FT+ L+ HVRQHTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 31.7 bits (71), Expect = 0.018
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGE 132
P C C KAFT+ L+ HVR+HTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 31.3 bits (70), Expect = 0.024
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGE 160
P +C C K+FT+ L H+RQHTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 30.1 bits (67), Expect = 0.077
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGE 104
P C C K+FT+ ++ H RQHTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 25.9 bits (56), Expect = 2.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTGE 48
P C +CGK F++ HV HTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 24.3 bits (52), Expect = 7.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 193 CIICTEPFNDKASLLEHLRSH 213
C++C + F +SL+ H+R H
Sbjct: 5 CVMCGKAFTQASSLIAHVRQH 25
Score = 24.3 bits (52), Expect = 9.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
P C CGKAF +L+ H R H
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQH 25
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 32.2 bits (73), Expect = 0.014
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRHTGESPHK 136
F C CPK F R DHL H+ H +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEER 32
Score = 26.8 bits (59), Expect = 1.3
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWHTGETPHR 52
F C C K F R DH H+ H R
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEER 32
Score = 26.4 bits (58), Expect = 1.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 137 CTYCMKSFTRKEHLTNHIRQHTG 159
C C K F R +HL+ HI H
Sbjct: 5 CPECPKRFMRSDHLSKHITLHEL 27
Score = 25.3 bits (55), Expect = 3.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 164 SCEFCDRTFTRKEHLKRHLRQH 185
+C C + F R +HL +H+ H
Sbjct: 4 ACPECPKRFMRSDHLSKHITLH 25
Score = 24.9 bits (54), Expect = 5.6
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 53 CDYCAKTFTRKEHLVNHVRQHTG 75
C C K F R +HL H+ H
Sbjct: 5 CPECPKRFMRSDHLSKHITLHEL 27
Score = 24.5 bits (53), Expect = 6.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 81 CNYCAKSFTRKDHMVYHERQHTG 103
C C K F R DH+ H H
Sbjct: 5 CPECPKRFMRSDHLSKHITLHEL 27
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 35.1 bits (80), Expect = 0.016
Identities = 18/128 (14%), Positives = 34/128 (26%), Gaps = 7/128 (5%)
Query: 100 QHTGETPFPCQYCPKAFTRKDHL-VNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 158
+ + C + N +R KC + + H
Sbjct: 47 KSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHC 106
Query: 159 GESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPRDCP 218
+ C C R F + H+ H+ + P + +C C + H ++CP
Sbjct: 107 EFALMDCPQCQRPFQKF-HINIHILKDCPRRQVSCDNCAASMAFED-----KEIHDQNCP 160
Query: 219 YVCTDCGK 226
Sbjct: 161 LALEHHHH 168
Score = 32.8 bits (74), Expect = 0.090
Identities = 15/125 (12%), Positives = 33/125 (26%), Gaps = 7/125 (5%)
Query: 17 HITDSPFHCDICGKYFSRKDHYKNHVMWHT-GETPHRCDYCAKTFTRKEHLVNHVRQHTG 75
I D+ C + + + ++ +C + + + H
Sbjct: 48 SIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCE 107
Query: 76 ESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPH 135
+ C C + F + H+ H + C C + +D H P
Sbjct: 108 FALMDCPQCQRPFQKF-HINIHILKDCPRRQVSCDNCAASMAFED-----KEIHDQNCPL 161
Query: 136 KCTYC 140
+
Sbjct: 162 ALEHH 166
Score = 30.8 bits (69), Expect = 0.38
Identities = 14/116 (12%), Positives = 36/116 (31%), Gaps = 3/116 (2%)
Query: 70 VRQHTGESPHHCNYCAKSFTRKDHMVYHE-RQHTGETPFPCQYCPKAFTRKDHLVNHVRR 128
+ + ++ H C + + ++ C + + +
Sbjct: 45 IIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQA 104
Query: 129 HTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQ 184
H + C C + F + H+ HI + SC+ C + ++ + H +
Sbjct: 105 HCEFALMDCPQCQRPFQKF-HINIHILKDCPRRQVSCDNCAASMAFED-KEIHDQN 158
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.1 bits (72), Expect = 0.016
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRHTGE 132
F C+YC K F K L H+R HT E
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 30.6 bits (68), Expect = 0.048
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 53 CDYCAKTFTRKEHLVNHVRQHTGE 76
C+YC K F K L H+R HT E
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 29.4 bits (65), Expect = 0.13
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 137 CTYCMKSFTRKEHLTNHIRQHTGE 160
C YC K F K L H+R HT E
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 27.9 bits (61), Expect = 0.56
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 164 SCEFCDRTFTRKEHLKRHLRQH 185
+CE+C++ F K L+ HLR H
Sbjct: 11 TCEYCNKVFKFKHSLQAHLRIH 32
Score = 27.5 bits (60), Expect = 0.76
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 81 CNYCAKSFTRKDHMVYHERQHTGE 104
C YC K F K + H R HT E
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 25.6 bits (55), Expect = 3.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWHTGE 48
F C+ C K F K + H+ HT E
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNE 35
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 31.4 bits (71), Expect = 0.024
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRHTGE 132
F C CPK F R DHL H+ H +
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENK 28
Score = 26.4 bits (58), Expect = 1.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 137 CTYCMKSFTRKEHLTNHIRQHTGE 160
C C K F R +HLT HI H +
Sbjct: 5 CPECPKRFMRSDHLTLHILLHENK 28
Score = 25.2 bits (55), Expect = 3.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWHTGE 48
F C C K F R DH H++ H +
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENK 28
Score = 25.2 bits (55), Expect = 4.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 164 SCEFCDRTFTRKEHLKRHLRQHL 186
+C C + F R +HL H+ H
Sbjct: 4 ACPECPKRFMRSDHLTLHILLHE 26
Score = 24.9 bits (54), Expect = 5.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 53 CDYCAKTFTRKEHLVNHVRQHTGE 76
C C K F R +HL H+ H +
Sbjct: 5 CPECPKRFMRSDHLTLHILLHENK 28
Score = 24.1 bits (52), Expect = 8.5
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 81 CNYCAKSFTRKDHMVYHERQHTGE 104
C C K F R DH+ H H +
Sbjct: 5 CPECPKRFMRSDHLTLHILLHENK 28
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 34.8 bits (79), Expect = 0.026
Identities = 9/51 (17%), Positives = 14/51 (27%)
Query: 137 CTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLP 187
MK T H GE E ++ E L+ + +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVL 233
Score = 32.5 bits (73), Expect = 0.14
Identities = 16/127 (12%), Positives = 30/127 (23%), Gaps = 4/127 (3%)
Query: 34 RKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDH 93
+D W + +R + K + + +V N A + + +
Sbjct: 108 TQDKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVV--ISREEREQNLLAFQHSERIY 165
Query: 94 MVYHERQHTGE--TPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLT 151
GE + + K H GE + + E L
Sbjct: 166 FRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLR 225
Query: 152 NHIRQHT 158
I
Sbjct: 226 GPIHLSV 232
Score = 28.6 bits (63), Expect = 2.8
Identities = 6/52 (11%), Positives = 13/52 (25%)
Query: 23 FHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHT 74
++ + K H GE + + + E L +
Sbjct: 181 WYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 31.3 bits (70), Expect = 0.027
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 157 HTGESPHSCEFCDRTFTRKEHLKRHLRQH 185
+G+ P C C FT K + RHL+ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 30.5 bits (68), Expect = 0.064
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 101 HTGETPFPCQYCPKAFTRKDHLVNHVRRHT 130
+G+ PF C+ C AFT K + H++ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 29.0 bits (64), Expect = 0.19
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 129 HTGESPHKCTYCMKSFTRKEHLTNHIRQHT 158
+G+ P C C+ +FT K + H++ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 27.8 bits (61), Expect = 0.51
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHT 74
+G+ P C C FT K + H++ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 25.9 bits (56), Expect = 2.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 73 HTGESPHHCNYCAKSFTRKDHMVYHERQHT 102
+G+ P C C +FT K + H + HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 24.7 bits (53), Expect = 6.7
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 213 HPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
P+VC C AF K N H + H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 31.4 bits (71), Expect = 0.030
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 125 HVRRHTGESPHK---CTY--CMKSFTRKEHLTNHIRQHTGE 160
+ ++ E P K C + C K+F R+ ++ +HI+ H +
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 29.8 bits (67), Expect = 0.11
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 153 HIRQHTGESPHS---CEF--CDRTFTRKEHLKRHLRQHL 186
I ++ E P C F C +TF R+ +++ H++ HL
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL 44
Score = 29.4 bits (66), Expect = 0.17
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 100 QHTGETP---FPCQY--CPKAFTRKDHLVNHVRRHTGE 132
++ E P F C + C K F R+ ++ +H++ H +
Sbjct: 9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 27.9 bits (62), Expect = 0.65
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 45 HTGETPHR---CDY--CAKTFTRKEHLVNHVRQHTGE 76
+ E P + C + C KTF R+ ++ +H++ H +
Sbjct: 10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 27.1 bits (60), Expect = 1.2
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 216 DCPYVCT--DCGKAFRLKGNLMFHQRSH 241
D + C C K F+ + N+ H ++H
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 26.4 bits (58), Expect = 2.4
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 20 DSPFHCDI--CGKYFSRKDHYKNHVMWHTGE 48
D F C C K F R+ + ++H+ H +
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 24.4 bits (53), Expect = 9.9
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 69 HVRQHTGESPHH---CNY--CAKSFTRKDHMVYHERQHTGE 104
+ ++ E P C + C K+F R+ ++ H + H +
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.3 bits (70), Expect = 0.042
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 45 HTGETPHRCDYCAKTFTRKEHLVNHVRQHT 74
E +C+ C KTF+ ++L H R HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 30.6 bits (68), Expect = 0.077
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 129 HTGESPHKCTYCMKSFTRKEHLTNHIRQHT 158
E KC C K+F+ ++LT H R HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 29.8 bits (66), Expect = 0.15
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 73 HTGESPHHCNYCAKSFTRKDHMVYHERQHT 102
E CN C K+F+ ++ HER HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 29.0 bits (64), Expect = 0.22
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 212 SHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGM 245
S ++ + C C K F L H+R H +G+
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGV 39
Score = 29.0 bits (64), Expect = 0.26
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 101 HTGETPFPCQYCPKAFTRKDHLVNHVRRHT 130
E F C C K F+ +L H R HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 28.3 bits (62), Expect = 0.48
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 157 HTGESPHSCEFCDRTFTRKEHLKRHLRQHLPG 188
E C C++TF+ ++L +H R H G
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRG 38
Score = 27.9 bits (61), Expect = 0.70
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 240 SHQKGMPMDRPYHCDLCPKDFIDKGHLVSHRRSHTNGITNKFHTG 284
S ++ + C+ C K F +L H R HT G+ + +G
Sbjct: 2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG 46
Score = 25.9 bits (56), Expect = 2.9
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 16 SHITDSPFHCDICGKYFSRKDHYKNHVMWHT 46
S + F C+ C K FS + H HT
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 32.5 bits (73), Expect = 0.18
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 22/91 (24%)
Query: 19 TDSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLV-------NHVR 71
+C C ++F +++H+ G+ + + + F E+ + N
Sbjct: 289 EAKGIYCPFCSRWFKTSSVFESHL---VGKIHKKNESKRRNFVYSEYKLHRYLKYLNDEF 345
Query: 72 QHTGESPHHCNYCAKSFT-RKDHMVYHERQH 101
T +SF RK +ER
Sbjct: 346 SRT-----------RSFVERKLAFTANERMA 365
Score = 30.6 bits (68), Expect = 0.92
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 132 ESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHL 186
C +C + F +H+ G+ E R F E+ ++L
Sbjct: 290 AKGIYCPFCSRWFKTSSVFESHL---VGKIHKKNESKRRNFVYSEYKLHRYLKYL 341
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.0 bits (64), Expect = 0.18
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGE 76
P++C C+ K +L H+R+HTGE
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 29.0 bits (64), Expect = 0.21
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGE 160
P+KC C + K +L H+R+HTGE
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 29.0 bits (64), Expect = 0.21
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGE 132
P+ C C A K +L H+R+HTGE
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 25.6 bits (55), Expect = 3.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGE 104
P+ C C+ + K ++ H R+HTGE
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 24.4 bits (52), Expect = 8.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C C A +K NL H R H
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKH 32
Score = 24.4 bits (52), Expect = 9.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQH 185
P+ C C K +L HLR+H
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKH 32
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 29.0 bits (64), Expect = 0.20
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTGE 160
P+ C +C + F L H+R HTGE
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 28.2 bits (62), Expect = 0.37
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRHTGE 132
P+ C +C + F L HVR HTGE
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 27.4 bits (60), Expect = 0.74
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTGE 76
P+ C +C + F L HVR HTGE
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 27.0 bits (59), Expect = 1.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGE 104
P+ C +C + F + H R HTGE
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 26.3 bits (57), Expect = 1.6
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PYVC C + F G L H R H
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIH 26
Score = 26.3 bits (57), Expect = 1.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSHT 274
+PY C C + F D G L H R HT
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHT 27
Score = 24.3 bits (52), Expect = 8.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQH 185
P+ C C R F L+RH+R H
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIH 26
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 28.5 bits (63), Expect = 0.30
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 107 FPCQYCPKAFTRKDHLVNHVR 127
F C CPK F R D L H++
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
Score = 25.4 bits (55), Expect = 4.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 136 KCTYCMKSFTRKEHLTNHIR 155
C C K F R + L+ HI+
Sbjct: 4 ACPACPKRFMRSDALSKHIK 23
Score = 25.1 bits (54), Expect = 4.4
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 23 FHCDICGKYFSRKDHYKNHV 42
F C C K F R D H+
Sbjct: 3 FACPACPKRFMRSDALSKHI 22
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 0.52
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 248 DRPYHCDLCPKDFIDKGHLVSHRRSHT 274
+ + CD+C K F KG L SH+ HT
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHT 33
Score = 26.3 bits (57), Expect = 2.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 25 CDICGKYFSRKDHYKNHVMWHTGE 48
CD+CGK F K K+H + HT +
Sbjct: 12 CDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 24.4 bits (52), Expect = 8.0
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGE 76
H CD C K F K L +H HT +
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 27.8 bits (61), Expect = 0.52
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 251 YHCDLCPKDFIDKGHLVSHRRSHTN 275
Y C LC + F++K L H+R H N
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
Score = 25.5 bits (55), Expect = 3.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 163 HSCEFCDRTFTRKEHLKRHLRQH 185
+ C C+R+F K L RH R H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B*
1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Length = 379
Score = 30.9 bits (71), Expect = 0.66
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 173 TRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHP 214
TRK L R LR+ G++ N I D A LE R+ P
Sbjct: 114 TRK--LTRLLREK--GAQ-NGCIIAGDNPDAALALEKARAFP 150
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 28.4 bits (62), Expect = 1.1
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 91 KDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 134
K HM E + CQ+C K F K L H P
Sbjct: 42 KKHM---EVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.7 bits (59), Expect = 1.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 162 PHSCEFCDRTFTRKEHLKRHLRQ 184
++C C+R FTR++ L RH ++
Sbjct: 2 AYACGLCNRAFTRRDLLIRHAQK 24
Score = 26.7 bits (59), Expect = 1.3
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRR-HTG 131
+ C C +AFTR+D L+ H ++ H+G
Sbjct: 2 AYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 25.6 bits (56), Expect = 3.1
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 22 PFHCDICGKYFSRKDHYKNHV 42
+ C +C + F+R+D H
Sbjct: 2 AYACGLCNRAFTRRDLLIRHA 22
Score = 24.4 bits (53), Expect = 7.1
Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQ-HTG 103
+ C C ++FTR+D ++ H ++ H+G
Sbjct: 2 AYACGLCNRAFTRRDLLIRHAQKIHSG 28
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 26.6 bits (58), Expect = 1.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQH 73
P+ C+ C K F + L NH+R H
Sbjct: 2 PYVCERCGKRFVQSSQLANHIRHH 25
Score = 24.7 bits (53), Expect = 5.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 106 PFPCQYCPKAFTRKDHLVNHVRRH 129
P+ C+ C K F + L NH+R H
Sbjct: 2 PYVCERCGKRFVQSSQLANHIRHH 25
Score = 24.7 bits (53), Expect = 5.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQH 157
P+ C C K F + L NHIR H
Sbjct: 2 PYVCERCGKRFVQSSQLANHIRHH 25
Score = 24.3 bits (52), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 249 RPYHCDLCPKDFIDKGHLVSHRRSH 273
+PY C+ C K F+ L +H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (58), Expect = 1.5
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 46 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGE 76
+ E H+C C + F + L+ H H G+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQ 38
Score = 26.7 bits (58), Expect = 1.6
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 74 TGESPHHCNYCAKSFTRKDHMVYHERQHTGE 104
+ E H C C + F + ++ H+ H G+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQ 38
Score = 26.3 bits (57), Expect = 2.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 212 SHPRDCPYVCTDCGKAFRLKGNLMFHQRSH 241
S R+ + C +CG+ F +L+ HQ H
Sbjct: 6 SGSREKSHQCRECGEIFFQYVSLIEHQVLH 35
Score = 25.2 bits (54), Expect = 5.3
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 130 TGESPHKCTYCMKSFTRKEHLTNHIRQHTGE 160
+ E H+C C + F + L H H G+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQ 38
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 1.7
Identities = 38/317 (11%), Positives = 80/317 (25%), Gaps = 104/317 (32%)
Query: 37 HYKNHVMWHTGETPHRC---------------------DYCAKTFTRKE--HLV------ 67
H+ +H+ + TGE ++ D +++E H++
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 68 ---------------NHVRQHTGE----------SPHHCNYCAKSFTRKDHMVYHERQHT 102
V++ E SP S + ++ +R +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 103 GETPFPCQYCPKAFTRKDHLVNHVRRHTGE-SPHK--CTYCM----KS---------FTR 146
F +R +R+ E P K + K+ +
Sbjct: 122 DNQVFA----KYNVSRL-QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 147 KEHLTNHI------RQHTGES-------------PHSCEFCDRTFT---RKEHLKRHLRQ 184
+ + I ++ E+ P+ D + R ++ LR+
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 185 HLPGSEF-NCIICTEPFNDKASLLEHLRSHPRDCPYVCT--DCGKAFRLKGNLMFHQRSH 241
L + NC++ + + + C + T L H
Sbjct: 237 LLKSKPYENCLLVLLNVQNA----KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 242 QKGMPMDRPYHCDLCPK 258
M + L K
Sbjct: 293 HHSMTLTPDEVKSLLLK 309
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 25.7 bits (56), Expect = 2.5
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 160 ESPHSCEF--CDRTFTRKEHLKRHLRQH 185
+ P+SC+ CD+ F R L RH + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 25.0 bits (54), Expect = 5.6
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 248 DRPYHCDL--CPKDFIDKGHLVSHRRSHTN 275
DRPY CD C K F+ L+ H++SH
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 25.0 bits (54), Expect = 5.6
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 104 ETPFPCQY--CPKAFTRKDHLVNHVRRHTGES 133
+ P+ C + C KAF R L+ H + H ++
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
Score = 24.2 bits (52), Expect = 8.3
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 48 ETPHRCDY--CAKTFTRKEHLVNHVRQHTGES 77
+ P+ CD+ C K F R L+ H + H ++
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
>2k0m_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein structure initiative; NMR {Rhodospirillum
rubrum atcc 11170}
Length = 104
Score = 27.6 bits (61), Expect = 2.6
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 164 SCEFCDRTFTRKEHLKRHLRQHLPGSEFNCIICTEPFNDKASLLEHLRSHPR 215
E F RK ++ L I+ T D A L+E L+ HP
Sbjct: 6 PIEIAGHEFARKADALAFMKVMLNRYRPGDIVSTV---DGAFLVEALKRHPD 54
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 26.8 bits (59), Expect = 2.8
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 158
F C C ++ +K + HV C C K F ++ + H
Sbjct: 11 FTCNACGESV-KKIQVEKHVSNCRNCECLSCIDCGKDFWGDDY-----KSHV 56
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.5 bits (58), Expect = 3.4
Identities = 14/73 (19%), Positives = 20/73 (27%), Gaps = 5/73 (6%)
Query: 64 EHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKD--- 120
H C +C + + HE + G C C + KD
Sbjct: 3 SGSSGHEETECPLRLAVCQHCDLELSILK-LKEHE-DYCGARTELCGNCGRNVLVKDLKT 60
Query: 121 HLVNHVRRHTGES 133
H R +G S
Sbjct: 61 HPEVCGREGSGPS 73
>1ki0_A Angiostatin; kringle domains, hydrolase; HET: BCN; 1.75A {Homo
sapiens} SCOP: g.14.1.1 g.14.1.1 g.14.1.1 PDB: 2doh_X*
2doi_X 1cea_A 1ceb_A* 1b2i_A* 1pkr_A 2l0s_A 2kj4_A
1i5k_A 1hpj_A 1hpk_A*
Length = 253
Score = 28.2 bits (61), Expect = 3.8
Identities = 26/150 (17%), Positives = 35/150 (23%), Gaps = 2/150 (1%)
Query: 48 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPF 107
+PHR + T + N+ R + Y R D+ E +
Sbjct: 31 TSPHRPRFSPATHPSEGLEENYCRNPDNDPQGPWCYTTDPEKRYDYCDILECEEECMHCS 90
Query: 108 PCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTGESPHSCEF 167
Y K L SPH Y F K N+ R E C
Sbjct: 91 GENYDGKISKTMSGLECQAWDSQ--SPHAHGYIPSKFPNKNLKKNYCRNPDRELRPWCFT 148
Query: 168 CDRTFTRKEHLKRHLRQHLPGSEFNCIICT 197
D + P S
Sbjct: 149 TDPNKRWELCDIPRCTTPPPSSGPTYQCLK 178
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.1 bits (54), Expect = 4.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 218 PYVCTDCGKAFRLKGNLMFHQRSH 241
PY C+ CGK F LK + H R H
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVH 26
Score = 25.1 bits (54), Expect = 4.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTG 103
P+ C+ C K F+ K M H R HTG
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 24.4 bits (52), Expect = 6.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 134 PHKCTYCMKSFTRKEHLTNHIRQHTG 159
P+ C+ C K F+ K + H R HTG
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 24.4 bits (52), Expect = 6.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 22 PFHCDICGKYFSRKDHYKNHVMWHTG 47
P+ C +CGK FS K + H HTG
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 24.4 bits (52), Expect = 7.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 50 PHRCDYCAKTFTRKEHLVNHVRQHTG 75
P+ C C K F+ K + H R HTG
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHTG 28
>1k3k_A Functional anti-apoptotic factor VBCL-2 homolog; solution
structure, apoptosis; NMR {Human herpesvirus 8} SCOP:
f.1.4.1
Length = 158
Score = 27.3 bits (60), Expect = 4.5
Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 4/65 (6%)
Query: 122 LVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTG-ESPHSCEFCDRTFTRKEHLKR 180
+ + + ++ + R G +C + T + L+
Sbjct: 97 VAQKLSNEPHLRD-FALAVLPAYAYEAIGPQWFRARGGWRG--LKAYCTQVLTDDDDLEH 153
Query: 181 HLRQH 185
H H
Sbjct: 154 HHHHH 158
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.8 bits (58), Expect = 4.8
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 190 EFNCIICTE-PFNDKASLLEHLRSHPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMPMD 248
+C C L +H+ + ++ + C CGK R + +H ++ +P
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENCKQE-MFTCHHCGKQLRSLAGMKYHVMANHNSLPSG 92
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 26.8 bits (58), Expect = 5.7
Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 3/87 (3%)
Query: 189 SEFNCIICTEPFNDKASLLEHLRS--HPRDCPYVCTDCGKAFRLKGNLMFHQRSHQKGMP 246
S+ C +C+ ++ L H +S H + +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 247 MDRPYHCDLCPKDFIDKGHLVSHRRSH 273
DR C +C F SH
Sbjct: 91 -DRSKCCPVCNMTFSSPVVAESHYIGK 116
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 25.6 bits (55), Expect = 6.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 107 FPCQYCPKAFTRKDHLVNHVRRH 129
PC C K FT + L H +H
Sbjct: 14 LPCGLCGKVFTDANRLRQHEAQH 36
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A
{Nitrosomonas europaea} SCOP: a.138.1.3
Length = 546
Score = 27.9 bits (60), Expect = 6.8
Identities = 28/204 (13%), Positives = 55/204 (26%), Gaps = 6/204 (2%)
Query: 67 VNHVRQHTGESPHHC-NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNH 125
++ +R + P + + + + C C +KD +H
Sbjct: 102 LDKIRNLKSDDPLYYKKGKLEEVENNLRSMGKLGEKETLKEVGCIDCHVDVNKKDK-ADH 160
Query: 126 VRRHTGESPHKCTYCM-KSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQ 184
+ + C C + F +E + + G+ P +T
Sbjct: 161 TKDIRMPTADTCGTCHLREFAERESERDTMVWPNGQWPAGRPSHALDYTANIETTVWATM 220
Query: 185 HLPGSEFNCIICTEPFNDKASLLEHLRSHPRDC--PYVCTDCGKAFRLKGNLMFHQRSHQ 242
C +C N + + P C C + H
Sbjct: 221 PQREVAEGCTMCHTNQNKCDNCHTRHEFSAAESRKPEACATCHSGVDHNNWEAYTMSKHG 280
Query: 243 KGMPMDR-PYHCDLCPKDFIDKGH 265
K M+R ++ ++ KD KG
Sbjct: 281 KLAEMNRDKWNWEVRLKDAFSKGG 304
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics,
isomerase, structural genomics consortium, SGC; 1.85A
{Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Length = 246
Score = 27.6 bits (60), Expect = 6.8
Identities = 16/156 (10%), Positives = 30/156 (19%), Gaps = 12/156 (7%)
Query: 78 PHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES--PH 135
F + Y R V R + P
Sbjct: 57 RDVLTQFDYVFAENGLLAYRNGLEIHRQSL---LNALGNDRIVKFVKKTLRLIADLDIPV 113
Query: 136 KCTYCMKSFTRKEHLTNHIRQHTGESPHSCEFCDRTFTRKEHLKRHLRQHLPGSEFNCII 195
+ ++ +++ R + E D + L L P I
Sbjct: 114 QRGTFVEYRNGMINVSPIGRNCSQAERDEFEVYDNEHRVRASLIAELENSFPDFGLKYSI 173
Query: 196 C-------TEPFNDKASLLEHLRSHPRDCPYVCTDC 224
DK L+ + + +
Sbjct: 174 GGQISFDVFPVGWDKTYCLQFVEDDFEEIHFFGDKT 209
>3p0f_A Uridine phosphorylase 2; transferase; HET: BAU; 1.54A {Homo
sapiens} PDB: 3p0e_A* 2xrf_A
Length = 297
Score = 27.1 bits (59), Expect = 8.8
Identities = 10/65 (15%), Positives = 19/65 (29%)
Query: 20 DSPFHCDICGKYFSRKDHYKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPH 79
D +H D+ K + + + G +P+R A ++
Sbjct: 21 DILYHLDLGTKTHNLPAMFGDVKFVCVGGSPNRMKAFALFMHKELGFEEAEEDIKDICAG 80
Query: 80 HCNYC 84
YC
Sbjct: 81 TDRYC 85
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 27.2 bits (60), Expect = 8.8
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 165 CEFCDRTFTRKEHLKRHLRQ----HLPGSE 190
+F + F K+ +R+ ++ H PG+E
Sbjct: 39 DDFTLQYFGSKKQYERYRKKCTLRHPPGNE 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.467
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,714,066
Number of extensions: 330805
Number of successful extensions: 4047
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3335
Number of HSP's successfully gapped: 1444
Length of query: 355
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 260
Effective length of database: 4,049,298
Effective search space: 1052817480
Effective search space used: 1052817480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.6 bits)