Query psy13471
Match_columns 249
No_of_seqs 260 out of 1481
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:15:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00195 DSPc Dual specifici 100.0 1.1E-35 2.4E-40 234.6 16.9 137 2-138 1-138 (138)
2 KOG1718|consensus 100.0 1.2E-35 2.5E-40 234.7 14.7 139 3-141 18-157 (198)
3 KOG1717|consensus 100.0 1E-35 2.2E-40 250.3 12.1 141 1-141 171-314 (343)
4 KOG1716|consensus 100.0 1.3E-33 2.9E-38 248.5 16.3 145 2-146 75-223 (285)
5 cd00127 DSPc Dual specificity 100.0 9.4E-32 2E-36 211.8 16.1 135 2-136 2-139 (139)
6 PF00782 DSPc: Dual specificit 100.0 4.1E-32 9E-37 212.6 12.9 128 9-137 1-132 (133)
7 PRK12361 hypothetical protein; 99.9 8.7E-27 1.9E-31 222.1 16.7 138 2-140 95-238 (547)
8 PTZ00242 protein tyrosine phos 99.9 3.8E-22 8.2E-27 162.4 14.2 132 6-139 15-158 (166)
9 KOG1719|consensus 99.9 3.3E-21 7.2E-26 150.7 13.0 134 5-138 28-169 (183)
10 PTZ00393 protein tyrosine phos 99.9 5.1E-21 1.1E-25 161.7 14.4 119 20-141 109-231 (241)
11 KOG1720|consensus 99.7 1.8E-16 3.9E-21 130.2 13.2 116 21-137 88-206 (225)
12 COG2453 CDC14 Predicted protei 99.7 1.7E-16 3.6E-21 131.0 11.3 92 44-138 71-164 (180)
13 PF03162 Y_phosphatase2: Tyros 99.6 2.6E-15 5.7E-20 121.9 8.2 131 4-137 9-148 (164)
14 TIGR01244 conserved hypothetic 99.4 1.9E-12 4.1E-17 102.0 12.4 115 3-123 3-129 (135)
15 KOG2836|consensus 99.4 8.1E-12 1.8E-16 96.0 12.7 114 20-136 34-153 (173)
16 PF05706 CDKN3: Cyclin-depende 99.3 2.3E-12 5E-17 103.4 7.0 93 19-112 63-168 (168)
17 smart00012 PTPc_DSPc Protein t 99.2 1E-10 2.2E-15 86.6 10.5 85 48-132 5-99 (105)
18 smart00404 PTPc_motif Protein 99.2 1E-10 2.2E-15 86.6 10.5 85 48-132 5-99 (105)
19 COG5350 Predicted protein tyro 99.2 2.7E-10 5.8E-15 89.5 10.8 111 20-130 25-146 (172)
20 PF04273 DUF442: Putative phos 99.2 1.3E-10 2.8E-15 88.2 8.5 90 3-97 3-104 (110)
21 cd00047 PTPc Protein tyrosine 99.1 1.1E-09 2.5E-14 93.3 10.2 70 63-132 148-225 (231)
22 PLN02727 NAD kinase 99.0 1.6E-09 3.4E-14 106.4 10.6 99 8-108 262-371 (986)
23 smart00194 PTPc Protein tyrosi 99.0 3.2E-09 6.9E-14 92.1 9.9 70 63-132 176-252 (258)
24 PF13350 Y_phosphatase3: Tyros 98.9 2.1E-09 4.5E-14 87.2 7.0 107 4-113 15-158 (164)
25 COG3453 Uncharacterized protei 98.8 8.9E-08 1.9E-12 72.4 11.6 108 4-117 5-124 (130)
26 KOG1572|consensus 98.8 5.5E-08 1.2E-12 81.9 10.9 113 4-118 62-187 (249)
27 KOG2283|consensus 98.8 1.9E-08 4.1E-13 93.0 7.3 137 1-139 27-174 (434)
28 PRK15375 pathogenicity island 98.6 2.6E-07 5.6E-12 86.0 10.5 59 80-138 468-528 (535)
29 PHA02742 protein tyrosine phos 98.5 5.4E-07 1.2E-11 80.2 9.9 52 78-129 229-285 (303)
30 PF00102 Y_phosphatase: Protei 98.5 4.8E-07 1E-11 76.5 8.8 69 65-133 152-230 (235)
31 PHA02740 protein tyrosine phos 98.5 8.9E-07 1.9E-11 78.6 10.6 52 77-128 220-276 (298)
32 PHA02747 protein tyrosine phos 98.5 1E-06 2.2E-11 78.7 10.1 54 79-132 230-288 (312)
33 PF14566 PTPlike_phytase: Inos 98.5 6.2E-07 1.3E-11 71.7 7.4 58 44-102 91-148 (149)
34 PHA02746 protein tyrosine phos 98.4 9.5E-07 2.1E-11 79.3 9.3 52 79-130 248-304 (323)
35 PF04179 Init_tRNA_PT: Initiat 98.4 2.6E-06 5.6E-11 79.4 12.2 131 5-135 292-449 (451)
36 PHA02738 hypothetical protein; 98.4 1.6E-06 3.4E-11 77.9 10.0 54 78-131 227-285 (320)
37 COG5599 PTP2 Protein tyrosine 98.1 7.1E-06 1.5E-10 70.4 7.4 47 53-103 193-243 (302)
38 KOG0792|consensus 98.1 9.9E-06 2.1E-10 80.5 8.0 68 62-129 1045-1119(1144)
39 COG2365 Protein tyrosine/serin 98.0 1.6E-05 3.4E-10 68.9 7.8 60 77-136 135-194 (249)
40 KOG2386|consensus 98.0 1.7E-05 3.6E-10 72.2 6.5 133 20-152 54-198 (393)
41 KOG0790|consensus 97.7 6.2E-05 1.3E-09 68.8 5.9 111 19-130 372-511 (600)
42 KOG0789|consensus 97.6 0.00023 4.9E-09 65.7 8.5 65 65-129 281-356 (415)
43 KOG0791|consensus 97.4 0.0021 4.6E-08 57.7 11.1 89 43-133 252-347 (374)
44 PF14671 DSPn: Dual specificit 97.1 0.0032 7E-08 49.7 8.5 102 4-120 2-112 (141)
45 KOG4228|consensus 96.7 0.0026 5.7E-08 64.2 5.5 73 51-123 698-780 (1087)
46 KOG0793|consensus 96.0 0.021 4.6E-07 55.3 7.0 67 66-132 910-988 (1004)
47 KOG4228|consensus 95.3 0.042 9.2E-07 55.8 6.6 50 76-125 1016-1070(1087)
48 KOG4471|consensus 94.3 0.12 2.5E-06 49.5 6.4 36 67-102 362-399 (717)
49 cd01518 RHOD_YceA Member of th 91.1 0.69 1.5E-05 33.7 5.6 29 76-107 59-87 (101)
50 KOG1089|consensus 88.4 1.6 3.5E-05 42.0 7.1 46 58-103 319-370 (573)
51 PLN02160 thiosulfate sulfurtra 86.8 1.7 3.8E-05 33.8 5.4 77 25-107 27-107 (136)
52 COG0607 PspE Rhodanese-related 85.7 2.2 4.7E-05 31.0 5.2 69 22-103 14-84 (110)
53 PF06602 Myotub-related: Myotu 84.8 1.9 4E-05 39.4 5.3 21 76-96 229-249 (353)
54 cd01533 4RHOD_Repeat_2 Member 78.9 5.6 0.00012 29.2 5.2 28 76-106 64-91 (109)
55 PRK01415 hypothetical protein; 77.5 3.4 7.4E-05 35.8 4.1 29 76-107 169-197 (247)
56 PRK00142 putative rhodanese-re 74.5 4.9 0.00011 36.0 4.4 47 76-137 169-215 (314)
57 cd01448 TST_Repeat_1 Thiosulfa 74.4 6.5 0.00014 29.4 4.6 40 66-107 65-106 (122)
58 smart00400 ZnF_CHCC zinc finge 73.3 4.7 0.0001 26.1 3.0 32 82-115 23-54 (55)
59 PF03861 ANTAR: ANTAR domain; 70.9 6.9 0.00015 25.5 3.4 26 93-118 15-40 (56)
60 cd01522 RHOD_1 Member of the R 70.6 15 0.00033 27.4 5.8 76 23-106 10-89 (117)
61 PF00096 zf-C2H2: Zinc finger, 69.4 1.2 2.7E-05 23.1 -0.4 19 191-209 1-19 (23)
62 PF03226 Yippee-Mis18: Yippee 68.2 2.5 5.5E-05 30.8 1.0 24 190-213 2-26 (96)
63 PF10122 Mu-like_Com: Mu-like 67.8 1.8 3.9E-05 27.9 0.1 18 190-207 4-21 (51)
64 smart00450 RHOD Rhodanese Homo 66.6 17 0.00036 25.2 5.1 29 76-107 54-82 (100)
65 cd01523 RHOD_Lact_B Member of 64.9 13 0.00027 26.7 4.2 29 76-107 59-87 (100)
66 cd01520 RHOD_YbbB Member of th 64.2 21 0.00045 27.1 5.5 29 76-106 84-112 (128)
67 cd01532 4RHOD_Repeat_1 Member 64.2 13 0.00027 26.5 4.0 29 77-106 49-77 (92)
68 cd01528 RHOD_2 Member of the R 63.9 20 0.00042 25.8 5.1 28 77-107 57-84 (101)
69 TIGR03865 PQQ_CXXCW PQQ-depend 63.7 18 0.00038 29.0 5.2 30 76-107 114-143 (162)
70 PF01807 zf-CHC2: CHC2 zinc fi 60.0 10 0.00022 27.7 2.9 37 82-120 54-90 (97)
71 PF02673 BacA: Bacitracin resi 58.2 11 0.00023 32.9 3.2 26 87-114 160-185 (259)
72 PF00581 Rhodanese: Rhodanese- 56.9 68 0.0015 22.8 7.6 80 25-107 10-98 (113)
73 PF09082 DUF1922: Domain of un 55.6 6.2 0.00013 27.1 1.0 19 190-209 3-21 (68)
74 PRK12554 undecaprenyl pyrophos 55.6 12 0.00025 33.0 3.0 26 87-114 166-191 (276)
75 TIGR00753 undec_PP_bacA undeca 55.3 12 0.00026 32.5 3.0 26 87-114 160-185 (255)
76 KOG3399|consensus 54.9 6.1 0.00013 30.3 1.0 26 188-213 13-38 (122)
77 TIGR02981 phageshock_pspE phag 54.6 39 0.00085 24.7 5.3 28 76-106 56-83 (101)
78 PRK11493 sseA 3-mercaptopyruva 54.1 12 0.00026 32.7 2.8 29 76-107 229-257 (281)
79 PRK00281 undecaprenyl pyrophos 53.3 14 0.0003 32.4 3.1 26 87-114 164-189 (268)
80 TIGR00853 pts-lac PTS system, 52.5 12 0.00026 27.3 2.2 17 77-94 2-18 (95)
81 COG4738 Predicted transcriptio 51.9 17 0.00037 27.6 2.9 32 87-119 23-54 (124)
82 PRK05416 glmZ(sRNA)-inactivati 51.7 26 0.00056 31.0 4.6 34 63-96 222-263 (288)
83 cd01519 RHOD_HSP67B2 Member of 50.1 32 0.00069 24.6 4.2 29 76-107 64-92 (106)
84 PRK10287 thiosulfate:cyanide s 50.0 37 0.00079 25.1 4.5 19 76-95 58-76 (104)
85 cd01534 4RHOD_Repeat_3 Member 49.8 23 0.0005 25.1 3.4 27 77-106 55-81 (95)
86 PF13912 zf-C2H2_6: C2H2-type 49.6 4.4 9.6E-05 21.8 -0.4 21 190-210 1-21 (27)
87 PRK05320 rhodanese superfamily 49.3 32 0.00068 29.9 4.7 27 77-106 174-200 (257)
88 PF01641 SelR: SelR domain; I 48.6 18 0.00039 27.9 2.7 21 187-207 34-54 (124)
89 cd04445 DEP_PLEK1 DEP (Disheve 47.7 21 0.00047 26.2 2.8 36 76-116 22-58 (99)
90 TIGR03642 cas_csx13 CRISPR-ass 47.4 63 0.0014 24.9 5.6 55 51-105 59-116 (124)
91 PF03668 ATP_bind_2: P-loop AT 47.0 25 0.00054 31.1 3.7 17 80-96 244-260 (284)
92 cd01529 4RHOD_Repeats Member o 46.3 30 0.00065 24.5 3.5 28 76-106 54-81 (96)
93 COG4416 Com Mu-like prophage p 46.2 4.3 9.4E-05 26.4 -0.9 17 190-206 4-20 (60)
94 cd01444 GlpE_ST GlpE sulfurtra 46.1 63 0.0014 22.5 5.2 29 75-106 53-81 (96)
95 cd01447 Polysulfide_ST Polysul 46.0 25 0.00053 25.0 3.1 28 76-106 59-86 (103)
96 PF13894 zf-C2H2_4: C2H2-type 45.3 5.1 0.00011 20.4 -0.6 19 191-209 1-19 (24)
97 cd01526 RHOD_ThiF Member of th 44.6 31 0.00067 25.8 3.5 28 76-106 70-97 (122)
98 PF10302 DUF2407: DUF2407 ubiq 44.5 14 0.00031 27.1 1.5 10 79-88 86-95 (97)
99 KOG0235|consensus 44.3 93 0.002 26.4 6.6 50 58-113 131-185 (214)
100 PRK00222 methionine sulfoxide 43.8 30 0.00065 27.4 3.3 21 187-207 40-60 (142)
101 COG3707 AmiR Response regulato 43.3 24 0.00053 29.3 2.8 23 96-118 150-172 (194)
102 cd01525 RHOD_Kc Member of the 42.9 39 0.00085 24.1 3.8 27 77-106 64-90 (105)
103 PF12874 zf-met: Zinc-finger o 41.7 5.9 0.00013 20.9 -0.7 22 191-212 1-22 (25)
104 PF13344 Hydrolase_6: Haloacid 40.9 1.4E+02 0.003 21.7 7.2 67 65-133 16-96 (101)
105 PF09623 Cas_NE0113: CRISPR-as 40.1 71 0.0015 27.2 5.3 60 51-110 82-143 (224)
106 COG2888 Predicted Zn-ribbon RN 40.1 7 0.00015 26.1 -0.6 12 188-199 36-47 (61)
107 PRK10886 DnaA initiator-associ 39.7 71 0.0015 26.5 5.2 37 62-101 24-61 (196)
108 TIGR00357 methionine-R-sulfoxi 39.6 37 0.0008 26.6 3.2 23 187-209 37-59 (134)
109 PHA02540 61 DNA primase; Provi 39.2 68 0.0015 29.2 5.3 39 78-119 51-90 (337)
110 KOG1004|consensus 38.8 62 0.0013 27.4 4.6 41 76-118 183-223 (230)
111 COG0794 GutQ Predicted sugar p 38.3 65 0.0014 27.0 4.7 38 64-106 27-64 (202)
112 cd01531 Acr2p Eukaryotic arsen 38.0 1.5E+02 0.0033 21.5 6.4 21 76-96 60-80 (113)
113 PRK06036 translation initiatio 37.0 84 0.0018 28.6 5.6 18 76-93 146-163 (339)
114 COG1968 BacA Undecaprenyl pyro 36.9 37 0.0008 29.8 3.1 25 88-114 166-190 (270)
115 cd01443 Cdc25_Acr2p Cdc25 enzy 36.7 1E+02 0.0022 22.5 5.2 19 77-95 65-83 (113)
116 cd05567 PTS_IIB_mannitol PTS_I 36.7 34 0.00073 24.2 2.5 15 79-93 1-15 (87)
117 PF02302 PTS_IIB: PTS system, 36.3 30 0.00064 24.2 2.1 15 80-94 1-15 (90)
118 cd01527 RHOD_YgaP Member of th 35.1 54 0.0012 23.2 3.4 18 76-94 52-69 (99)
119 COG1054 Predicted sulfurtransf 35.0 1.5E+02 0.0032 26.5 6.6 77 5-92 105-185 (308)
120 TIGR03586 PseI pseudaminic aci 34.8 40 0.00087 30.4 3.1 28 62-89 146-173 (327)
121 TIGR01460 HAD-SF-IIA Haloacid 34.7 1.8E+02 0.0039 24.5 7.1 69 65-134 16-98 (236)
122 KOG1530|consensus 34.6 87 0.0019 24.5 4.5 67 23-94 33-104 (136)
123 COG3973 Superfamily I DNA and 34.5 2E+02 0.0042 28.6 7.7 64 63-134 204-278 (747)
124 smart00355 ZnF_C2H2 zinc finge 34.3 5.5 0.00012 20.5 -1.6 20 191-210 1-20 (26)
125 PRK14890 putative Zn-ribbon RN 34.3 12 0.00026 24.9 -0.2 11 189-199 35-45 (59)
126 cd01530 Cdc25 Cdc25 phosphatas 34.2 45 0.00097 25.1 2.9 25 76-102 66-91 (121)
127 PF09419 PGP_phosphatase: Mito 34.1 31 0.00067 28.0 2.1 30 2-32 14-45 (168)
128 PRK09590 celB cellobiose phosp 34.1 34 0.00073 25.4 2.2 14 79-92 2-15 (104)
129 PRK00162 glpE thiosulfate sulf 34.1 1.1E+02 0.0023 22.1 5.0 33 71-106 51-83 (108)
130 TIGR01391 dnaG DNA primase, ca 33.7 1.5E+02 0.0032 27.6 6.8 37 82-120 55-91 (415)
131 TIGR00512 salvage_mtnA S-methy 33.4 1.1E+02 0.0023 27.8 5.7 9 80-88 149-157 (331)
132 PRK09629 bifunctional thiosulf 33.2 73 0.0016 31.4 4.9 35 69-106 212-248 (610)
133 PF03853 YjeF_N: YjeF-related 32.8 58 0.0013 26.1 3.5 71 68-143 12-85 (169)
134 COG2927 HolC DNA polymerase II 32.2 47 0.001 26.3 2.7 21 67-87 17-38 (144)
135 PF03811 Zn_Tnp_IS1: InsA N-te 31.7 23 0.0005 21.1 0.7 10 188-197 27-36 (36)
136 COG2089 SpsE Sialic acid synth 31.2 47 0.001 30.0 2.9 31 62-92 159-189 (347)
137 PRK05600 thiamine biosynthesis 31.1 59 0.0013 29.8 3.7 25 79-106 333-357 (370)
138 COG3091 SprT Zn-dependent meta 31.0 26 0.00057 28.0 1.2 13 189-201 139-151 (156)
139 PF11822 DUF3342: Domain of un 31.0 2.8E+02 0.0061 25.0 7.8 65 63-132 91-158 (317)
140 PF12171 zf-C2H2_jaz: Zinc-fin 30.8 15 0.00032 19.9 -0.2 22 191-212 2-23 (27)
141 PRK10499 PTS system N,N'-diace 30.1 57 0.0012 24.2 2.9 30 78-107 3-33 (106)
142 cd01449 TST_Repeat_2 Thiosulfa 29.7 1.3E+02 0.0029 21.8 4.9 37 67-106 65-103 (118)
143 cd01521 RHOD_PspE2 Member of t 29.3 85 0.0018 22.8 3.7 29 76-106 62-91 (110)
144 PF10955 DUF2757: Protein of u 28.9 35 0.00075 24.0 1.4 14 189-202 3-16 (76)
145 PRK05508 methionine sulfoxide 28.3 39 0.00085 25.9 1.7 23 187-209 30-52 (119)
146 PRK05772 translation initiatio 27.0 1.3E+02 0.0028 27.7 5.1 14 76-89 165-178 (363)
147 COG4049 Uncharacterized protei 26.7 9.9 0.00021 25.0 -1.6 27 187-213 14-40 (65)
148 PF12760 Zn_Tnp_IS1595: Transp 26.5 38 0.00083 21.0 1.1 12 187-198 34-45 (46)
149 PRK11784 tRNA 2-selenouridine 26.2 89 0.0019 28.4 3.9 28 77-106 87-114 (345)
150 PF03102 NeuB: NeuB family; I 25.9 96 0.0021 26.7 3.8 28 62-89 125-152 (241)
151 COG2897 SseA Rhodanese-related 25.7 54 0.0012 29.0 2.3 27 76-102 232-259 (285)
152 KOG4542|consensus 25.7 22 0.00047 25.5 -0.1 24 5-28 63-86 (96)
153 smart00834 CxxC_CXXC_SSSS Puta 25.6 41 0.00089 19.8 1.2 12 189-200 4-15 (41)
154 PRK01112 phosphoglyceromutase; 25.6 1.8E+02 0.0039 24.5 5.5 50 58-113 148-202 (228)
155 COG0406 phoE Broad specificity 25.4 1.2E+02 0.0026 24.7 4.3 34 58-91 122-158 (208)
156 PF04343 DUF488: Protein of un 25.2 2.9E+02 0.0063 20.6 7.8 34 21-54 7-53 (122)
157 PF13909 zf-H2C2_5: C2H2-type 24.9 17 0.00037 18.9 -0.6 18 191-209 1-18 (24)
158 PHA02768 hypothetical protein; 24.6 15 0.00033 24.1 -1.0 21 190-210 5-25 (55)
159 PF13717 zinc_ribbon_4: zinc-r 24.5 56 0.0012 19.2 1.5 14 187-200 22-35 (36)
160 COG0358 DnaG DNA primase (bact 24.5 1.7E+02 0.0038 28.4 5.8 42 77-121 50-92 (568)
161 PF09723 Zn-ribbon_8: Zinc rib 24.3 46 0.00099 20.2 1.2 12 189-200 4-15 (42)
162 TIGR02094 more_P_ylases alpha- 24.2 96 0.0021 30.5 4.0 38 78-118 160-200 (601)
163 PF08050 Tet_res_leader: Tetra 24.0 34 0.00074 17.3 0.4 9 192-200 2-10 (20)
164 PRK08624 hypothetical protein; 24.0 48 0.001 30.5 1.7 38 82-120 59-101 (373)
165 PF02892 zf-BED: BED zinc fing 23.9 27 0.00059 21.2 0.1 17 187-203 13-29 (45)
166 cd05565 PTS_IIB_lactose PTS_II 23.5 61 0.0013 23.8 1.9 16 80-97 2-17 (99)
167 COG1660 Predicted P-loop-conta 23.4 85 0.0018 27.6 3.0 17 80-96 245-261 (286)
168 TIGR03569 NeuB_NnaB N-acetylne 23.3 85 0.0018 28.4 3.2 27 62-88 145-173 (329)
169 PRK05728 DNA polymerase III su 22.9 1.1E+02 0.0023 23.9 3.4 26 63-88 13-39 (142)
170 TIGR02584 cas_NE0113 CRISPR-as 22.8 2.3E+02 0.0051 23.9 5.4 45 63-107 101-146 (209)
171 PRK04860 hypothetical protein; 22.7 49 0.0011 26.7 1.4 15 188-202 141-155 (160)
172 TIGR02605 CxxC_CxxC_SSSS putat 22.5 50 0.0011 20.8 1.1 11 189-199 4-14 (52)
173 TIGR03167 tRNA_sel_U_synt tRNA 22.2 2.4E+02 0.0052 25.2 5.8 28 77-106 73-100 (311)
174 PRK10310 PTS system galactitol 21.8 67 0.0015 23.2 1.9 16 80-95 4-19 (94)
175 cd05564 PTS_IIB_chitobiose_lic 21.8 68 0.0015 23.2 1.9 13 80-92 1-13 (96)
176 TIGR01245 trpD anthranilate ph 21.8 2.3E+02 0.005 25.5 5.7 61 68-132 90-155 (330)
177 PLN02723 3-mercaptopyruvate su 21.7 98 0.0021 27.6 3.3 37 67-106 256-294 (320)
178 PF06397 Desulfoferrod_N: Desu 21.7 57 0.0012 19.4 1.2 13 188-200 4-16 (36)
179 PRK07411 hypothetical protein; 21.5 1E+02 0.0022 28.4 3.4 29 76-107 340-368 (390)
180 COG3564 Uncharacterized protei 21.4 1.1E+02 0.0025 22.5 2.9 24 66-89 11-35 (116)
181 PF07975 C1_4: TFIIH C1-like d 21.3 33 0.00072 22.1 0.1 24 188-211 19-42 (51)
182 PF04364 DNA_pol3_chi: DNA pol 21.2 1.2E+02 0.0026 23.5 3.3 23 65-87 15-38 (137)
183 COG0279 GmhA Phosphoheptose is 21.2 1.6E+02 0.0035 24.0 4.0 31 61-94 23-54 (176)
184 PRK05667 dnaG DNA primase; Val 21.2 3.7E+02 0.008 26.3 7.3 41 82-124 57-97 (580)
185 PRK01269 tRNA s(4)U8 sulfurtra 21.2 1.3E+02 0.0028 28.6 4.1 29 75-106 446-474 (482)
186 PRK05720 mtnA methylthioribose 21.2 2.1E+02 0.0046 26.0 5.3 17 76-92 145-161 (344)
187 COG1571 Predicted DNA-binding 21.1 39 0.00084 31.6 0.6 15 190-204 367-381 (421)
188 PF05763 DUF835: Protein of un 21.1 2.7E+02 0.0059 21.6 5.3 53 60-126 59-111 (136)
189 PF12668 DUF3791: Protein of u 21.0 1.6E+02 0.0035 19.3 3.5 26 94-119 5-30 (62)
190 PRK13938 phosphoheptose isomer 20.9 2.5E+02 0.0055 23.2 5.4 42 59-103 25-67 (196)
191 TIGR00319 desulf_FeS4 desulfof 20.7 64 0.0014 18.5 1.3 13 188-200 5-17 (34)
192 COG1440 CelA Phosphotransferas 20.1 93 0.002 23.1 2.3 15 79-93 2-16 (102)
No 1
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=100.00 E-value=1.1e-35 Score=234.58 Aligned_cols=137 Identities=37% Similarity=0.578 Sum_probs=129.4
Q ss_pred CCcccCCEEEcCccccCCHhHHHhCCCcEEEEeCcCCCCCCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHh-hCCCc
Q psy13471 2 PNLVEENLYLGDLNDAMGLKSSNEANIKFVFSIGIFPTLGKISSLTYRHIEVADLPSEDLLSHFDSAYEFIRES-QSEGA 80 (249)
Q Consensus 2 P~~I~~~LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~~~~~~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~-~~~~~ 80 (249)
|++|.|+||+|+.+++.+.+.|+++||++|||+..+.......+++|+++|+.|....++.+.|..+++||+.. ..+++
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGK 80 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCe
Confidence 89999999999999999999999999999999998764444578999999999987888899999999999999 88999
Q ss_pred EEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHh
Q psy13471 81 ILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQRM 138 (249)
Q Consensus 81 VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e~~ 138 (249)
|||||.+|+|||+++++||||+..|+++++|+++|+++||.+.||.+|++||+.||++
T Consensus 81 VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 81 VLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred EEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999973
No 2
>KOG1718|consensus
Probab=100.00 E-value=1.2e-35 Score=234.69 Aligned_cols=139 Identities=29% Similarity=0.456 Sum_probs=132.1
Q ss_pred CcccCCEEEcCccccCCHhHHHhCCCcEEEEeCcCCCCCCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHh-hCCCcE
Q psy13471 3 NLVEENLYLGDLNDAMGLKSSNEANIKFVFSIGIFPTLGKISSLTYRHIEVADLPSEDLLSHFDSAYEFIRES-QSEGAI 81 (249)
Q Consensus 3 ~~I~~~LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~~~~~~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~-~~~~~V 81 (249)
++|.++||+++=..|.+...|+++|||+|||++.+.......+++|..+|+.|.+...|.+||+.+.+.|+.. .++|++
T Consensus 18 SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~gG~T 97 (198)
T KOG1718|consen 18 SQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRGGKT 97 (198)
T ss_pred hhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcCCcE
Confidence 6899999999777888999999999999999999875566799999999999999999999999999999999 999999
Q ss_pred EEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHhcCC
Q psy13471 82 LVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQRMRMT 141 (249)
Q Consensus 82 LVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e~~~~~ 141 (249)
||||.+|+||||++|+||||+..+|++.||+.++|.+||.|.||.||++||..||+.++.
T Consensus 98 LvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g 157 (198)
T KOG1718|consen 98 LVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFG 157 (198)
T ss_pred EEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999997654
No 3
>KOG1717|consensus
Probab=100.00 E-value=1e-35 Score=250.32 Aligned_cols=141 Identities=34% Similarity=0.530 Sum_probs=132.4
Q ss_pred CCCcccCCEEEcCccccCCHhHHHhCCCcEEEEeCcCCCC--CCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHh-hC
Q psy13471 1 MPNLVEENLYLGDLNDAMGLKSSNEANIKFVFSIGIFPTL--GKISSLTYRHIEVADLPSEDLLSHFDSAYEFIRES-QS 77 (249)
Q Consensus 1 ~P~~I~~~LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~~--~~~~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~-~~ 77 (249)
||.+|+|+||+|+..++.|.+.|+++||++|||+...... +.-..+.|++||+.|.-++++...|++|+.||+++ .+
T Consensus 171 FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk 250 (343)
T KOG1717|consen 171 FPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSK 250 (343)
T ss_pred cchhhccchhcccccccccHHHHHhcCceEEEecCCCCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhcc
Confidence 7899999999999999999999999999999999987421 22377899999999999999999999999999999 88
Q ss_pred CCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHhcCC
Q psy13471 78 EGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQRMRMT 141 (249)
Q Consensus 78 ~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e~~~~~ 141 (249)
+..|||||.+|+|||+||++||||.+..+++.+|+++|+.++.+|.||.+||.||..||+++..
T Consensus 251 ~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl 314 (343)
T KOG1717|consen 251 NCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGL 314 (343)
T ss_pred CCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999998654
No 4
>KOG1716|consensus
Probab=100.00 E-value=1.3e-33 Score=248.46 Aligned_cols=145 Identities=37% Similarity=0.528 Sum_probs=134.8
Q ss_pred CCcccCCEEEcCccccCCHhHHHhCCCcEEEEeCcCCCCC--CC-CCeEEEEEEeccCCCCchHHHHHHHHHHHHHh-hC
Q psy13471 2 PNLVEENLYLGDLNDAMGLKSSNEANIKFVFSIGIFPTLG--KI-SSLTYRHIEVADLPSEDLLSHFDSAYEFIRES-QS 77 (249)
Q Consensus 2 P~~I~~~LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~~~--~~-~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~-~~ 77 (249)
+.+|.|+||+|+...+.+.+.|+++||++|+|+....... .. .+++|+++++.|.+..||+.+|+++++||+.+ ..
T Consensus 75 ~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~ 154 (285)
T KOG1716|consen 75 IVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREK 154 (285)
T ss_pred ceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhC
Confidence 3679999999999999999999999999999999886432 23 48999999999999999999999999999999 99
Q ss_pred CCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHhcCCCCCCC
Q psy13471 78 EGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQRMRMTLDLNF 146 (249)
Q Consensus 78 ~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e~~~~~~~~~~ 146 (249)
+|+|||||.+|+|||+|+++||||+.++|++++|+++|+++||.+.||.||+.||.+|++++.......
T Consensus 155 ~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~~ 223 (285)
T KOG1716|consen 155 GGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPSQ 223 (285)
T ss_pred CCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999987765544
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=100.00 E-value=9.4e-32 Score=211.75 Aligned_cols=135 Identities=40% Similarity=0.613 Sum_probs=126.8
Q ss_pred CCcccCCEEEcCccccCCHhHHHhCCCcEEEEeCcCCCC--CCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHh-hCC
Q psy13471 2 PNLVEENLYLGDLNDAMGLKSSNEANIKFVFSIGIFPTL--GKISSLTYRHIEVADLPSEDLLSHFDSAYEFIRES-QSE 78 (249)
Q Consensus 2 P~~I~~~LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~~--~~~~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~-~~~ 78 (249)
+++|.|+||+|+.+++.+.+.|++.||++|||++..... ....+++|.++|+.|.+..++...++.+++||+.. ..+
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~ 81 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKG 81 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999987643 23488999999999999888888999999999999 778
Q ss_pred CcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHH
Q psy13471 79 GAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQ 136 (249)
Q Consensus 79 ~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e 136 (249)
++|||||.+|.|||+++++||||+..++++++|+++||++||.+.||.+|++||..||
T Consensus 82 ~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 82 GKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999986
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.98 E-value=4.1e-32 Score=212.65 Aligned_cols=128 Identities=35% Similarity=0.577 Sum_probs=121.0
Q ss_pred EEEcCccccCCHhHHHhCCCcEEEEeCcCCCC---CCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHh-hCCCcEEEE
Q psy13471 9 LYLGDLNDAMGLKSSNEANIKFVFSIGIFPTL---GKISSLTYRHIEVADLPSEDLLSHFDSAYEFIRES-QSEGAILVH 84 (249)
Q Consensus 9 LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~~---~~~~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~-~~~~~VLVH 84 (249)
||+|+.+++. .+.|+++||++|||+..+... ....++.++++|+.|....++.+.|+.+++||+++ .++++||||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 79 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVH 79 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEE
Confidence 7999999999 999999999999999988643 23478999999999988888899999999999999 899999999
Q ss_pred ecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHH
Q psy13471 85 CYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQR 137 (249)
Q Consensus 85 C~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e~ 137 (249)
|.+|+|||+++++||||...+|++++|+++|+++||.+.||++|++||.+||+
T Consensus 80 C~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 80 CKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp ESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHH
T ss_pred eCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999996
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.95 E-value=8.7e-27 Score=222.10 Aligned_cols=138 Identities=22% Similarity=0.327 Sum_probs=124.5
Q ss_pred CCcccCCEEEcCccccCCHhHHHhCCCcEEEEeCcCCCC----CCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHh-h
Q psy13471 2 PNLVEENLYLGDLNDAMGLKSSNEANIKFVFSIGIFPTL----GKISSLTYRHIEVADLPSEDLLSHFDSAYEFIRES-Q 76 (249)
Q Consensus 2 P~~I~~~LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~~----~~~~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~-~ 76 (249)
+++|.|+||+|+...+.|.+.|+++||++|||++.+... ....+++|+++|+.|...++ .++|+++++||++. .
T Consensus 95 ~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~-~~~l~~a~~~i~~~~~ 173 (547)
T PRK12361 95 IQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPT-LAQLNQAINWIHRQVR 173 (547)
T ss_pred ceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCc-HHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999865421 12367899999999987665 68899999999999 8
Q ss_pred CCCcEEEEecCCCchhHHHHHHHHHHh-CCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHhcC
Q psy13471 77 SEGAILVHCYHGVSRSATIVIAYLMKR-DDLGVQTAFDRVKSARDVISPNEGFMHQLALYQRMRM 140 (249)
Q Consensus 77 ~~~~VLVHC~~G~sRS~tvv~AYLm~~-~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e~~~~ 140 (249)
++++|||||.+|+|||+++++||||.+ .++++++|+++||++||.+.||++++++|+.|++.+.
T Consensus 174 ~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~ 238 (547)
T PRK12361 174 ANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGK 238 (547)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCC
Confidence 889999999999999999999999976 5899999999999999999999999999999998754
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.89 E-value=3.8e-22 Score=162.37 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=105.2
Q ss_pred cCCEEEcCccccC----CHhHHHhCCCcEEEEeCcCCCCC-CC--CCeEEEEEEeccCCCCchHHHHHHHHHHHHHh---
Q psy13471 6 EENLYLGDLNDAM----GLKSSNEANIKFVFSIGIFPTLG-KI--SSLTYRHIEVADLPSEDLLSHFDSAYEFIRES--- 75 (249)
Q Consensus 6 ~~~LylG~~~~a~----~~~~L~~~gI~~Vl~l~~~~~~~-~~--~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~--- 75 (249)
.+.+..-..+... +.+.|+++||++||+++.+..+. .+ .++.++++|+.|...+. .+.+..+++++++.
T Consensus 15 ~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~-~~~i~~~~~~i~~~~~~ 93 (166)
T PTZ00242 15 LFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPP-KAVIDNWLRLLDQEFAK 93 (166)
T ss_pred ceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCC-HHHHHHHHHHHHHHHHh
Confidence 3444444444332 34788999999999998654321 22 58999999998876554 55677778888776
Q ss_pred --hCCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHhc
Q psy13471 76 --QSEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQRMR 139 (249)
Q Consensus 76 --~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e~~~ 139 (249)
..+++|+|||.+|+||||+++++|||...++++++|+++||++||.+ .|..++++|..|++..
T Consensus 94 ~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~ 158 (166)
T PTZ00242 94 QSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPRK 158 (166)
T ss_pred hccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHh
Confidence 34999999999999999999999999999999999999999999986 4899999999998753
No 9
>KOG1719|consensus
Probab=99.87 E-value=3.3e-21 Score=150.73 Aligned_cols=134 Identities=22% Similarity=0.309 Sum_probs=117.2
Q ss_pred ccCCEEEcCccc-cCCHhHHHhCCCcEEEEeCcCCCCCC------CCCeEEEEEEeccCCCCchHHHHHHHHHHHHHh-h
Q psy13471 5 VEENLYLGDLND-AMGLKSSNEANIKFVFSIGIFPTLGK------ISSLTYRHIEVADLPSEDLLSHFDSAYEFIRES-Q 76 (249)
Q Consensus 5 I~~~LylG~~~~-a~~~~~L~~~gI~~Vl~l~~~~~~~~------~~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~-~ 76 (249)
|.+.+-+|.++- ..+...+++.|+..|+++..+.+-.. -.|++++.||..|.-...-++.+.++++||++. .
T Consensus 28 ~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~as 107 (183)
T KOG1719|consen 28 IDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNAS 107 (183)
T ss_pred ecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccc
Confidence 445566666652 35678899999999999998753111 179999999999998777788999999999999 8
Q ss_pred CCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHh
Q psy13471 77 SEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQRM 138 (249)
Q Consensus 77 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e~~ 138 (249)
.|..|+|||.+|.+||+|+|++|||...+|++++|+++||+.||.|...++.++-|.+|.+.
T Consensus 108 LGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~ 169 (183)
T KOG1719|consen 108 LGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQ 169 (183)
T ss_pred cCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999874
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.86 E-value=5.1e-21 Score=161.72 Aligned_cols=119 Identities=13% Similarity=0.173 Sum_probs=103.5
Q ss_pred HhHHHhCCCcEEEEeCcCCCCCC---CCCeEEEEEEeccCCCCchHHHHHHHHHHHHHh-hCCCcEEEEecCCCchhHHH
Q psy13471 20 LKSSNEANIKFVFSIGIFPTLGK---ISSLTYRHIEVADLPSEDLLSHFDSAYEFIRES-QSEGAILVHCYHGVSRSATI 95 (249)
Q Consensus 20 ~~~L~~~gI~~Vl~l~~~~~~~~---~~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~-~~~~~VLVHC~~G~sRS~tv 95 (249)
.+.|++.||++||+++....+.. ..|+.++++|+.|...++ .+.+++++++|+.. ..+++|+|||.+|+|||+++
T Consensus 109 l~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs-~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl 187 (241)
T PTZ00393 109 IKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPT-VDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVL 187 (241)
T ss_pred HHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCC-HHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 47789999999999987653222 269999999999987666 56788888999888 78999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHhcCC
Q psy13471 96 VIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQRMRMT 141 (249)
Q Consensus 96 v~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e~~~~~ 141 (249)
+++|||. .|+++++|+++||++||.+ +|..+++.|+.|++...+
T Consensus 188 ~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~k 231 (241)
T PTZ00393 188 ASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKKK 231 (241)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhccc
Confidence 9999998 6999999999999999988 599999999999987543
No 11
>KOG1720|consensus
Probab=99.71 E-value=1.8e-16 Score=130.22 Aligned_cols=116 Identities=15% Similarity=0.189 Sum_probs=95.9
Q ss_pred hHHHhCCCcEEEEeCcCCCCC-CC--CCeEEEEEEeccCCCCchHHHHHHHHHHHHHhhCCCcEEEEecCCCchhHHHHH
Q psy13471 21 KSSNEANIKFVFSIGIFPTLG-KI--SSLTYRHIEVADLPSEDLLSHFDSAYEFIRESQSEGAILVHCYHGVSRSATIVI 97 (249)
Q Consensus 21 ~~L~~~gI~~Vl~l~~~~~~~-~~--~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~~~~~~VLVHC~~G~sRS~tvv~ 97 (249)
..+++++++.|+.+.....+. .+ .|+.++.+++.|...++ ...+.+.++.++.+.++|+|.|||.+|.|||+++++
T Consensus 88 ~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~-~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liA 166 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPT-DAIVKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIA 166 (225)
T ss_pred HHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCC-HHHHHHHHHHHHHHHhcCeEEEEeccCCCchhHHHH
Confidence 456788999999998775322 22 78999999999998776 456666677777774499999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHH
Q psy13471 98 AYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQR 137 (249)
Q Consensus 98 AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e~ 137 (249)
||||+.++++..||++.||..||.+-..+....-|..|..
T Consensus 167 c~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 167 CYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 9999999999999999999999988777776666665544
No 12
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.69 E-value=1.7e-16 Score=130.97 Aligned_cols=92 Identities=24% Similarity=0.334 Sum_probs=76.9
Q ss_pred CCeEEEEEEeccCCCCchHHHHHHHHHHHHHh-hCCCcEEEEecCCCchhHHHHHHHHHHhC-CCCHHHHHHHHHhhCCc
Q psy13471 44 SSLTYRHIEVADLPSEDLLSHFDSAYEFIRES-QSEGAILVHCYHGVSRSATIVIAYLMKRD-DLGVQTAFDRVKSARDV 121 (249)
Q Consensus 44 ~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~-~~~~~VLVHC~~G~sRS~tvv~AYLm~~~-~~s~~~Al~~vr~~Rp~ 121 (249)
.+..++++|+.|...+++ ..+.++++||+++ .++++|+|||.+|+|||||+++||||.+. .+..++|+..++.+||.
T Consensus 71 ~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~~ 149 (180)
T COG2453 71 DGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRPG 149 (180)
T ss_pred CCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCc
Confidence 788999999999999985 8899999999999 88889999999999999999999999994 55666666667777665
Q ss_pred ccCCHHHHHHHHHHHHh
Q psy13471 122 ISPNEGFMHQLALYQRM 138 (249)
Q Consensus 122 i~pn~gf~~qL~~~e~~ 138 (249)
++.+...++..++..
T Consensus 150 --~v~~~~q~~~~~e~~ 164 (180)
T COG2453 150 --AVVTEIQHLFELEQE 164 (180)
T ss_pred --ccccHHHHHHHHHHH
Confidence 666666666666544
No 13
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.60 E-value=2.6e-15 Score=121.85 Aligned_cols=131 Identities=16% Similarity=0.210 Sum_probs=83.5
Q ss_pred cccCCEEEcCccccCCHhHHHhCCCcEEEEeCcCCCCCC------CCCeEEEEEEeccCCC---CchHHHHHHHHHHHHH
Q psy13471 4 LVEENLYLGDLNDAMGLKSSNEANIKFVFSIGIFPTLGK------ISSLTYRHIEVADLPS---EDLLSHFDSAYEFIRE 74 (249)
Q Consensus 4 ~I~~~LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~~~~------~~~~~~~~i~i~D~~~---~~l~~~~~~~~~fI~~ 74 (249)
.|.++||.|+.+.+.+..+|+++|+++||++..++.+.. ..++++.++++..... .--.+.+.++++.|.+
T Consensus 9 ~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild 88 (164)
T PF03162_consen 9 MVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILD 88 (164)
T ss_dssp EEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-
T ss_pred CCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhC
Confidence 588999999999999999999999999999998853221 1889999999976644 1124567788877755
Q ss_pred hhCCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHH
Q psy13471 75 SQSEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQR 137 (249)
Q Consensus 75 ~~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e~ 137 (249)
. .+.||||||..|..|||+++++|- +.+||++..|++..+.--.. ..+..-...++.|+.
T Consensus 89 ~-~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~~-~~~~~~~~fIe~f~~ 148 (164)
T PF03162_consen 89 P-RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAGP-KIRYLDEQFIELFDV 148 (164)
T ss_dssp G-GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHGG-G--HHHHHHHHT---
T ss_pred C-CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcCC-CCcHHHHHHHHhcCc
Confidence 4 578999999999999999999999 78899999999987754221 345555555555554
No 14
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.44 E-value=1.9e-12 Score=101.95 Aligned_cols=115 Identities=18% Similarity=0.173 Sum_probs=87.1
Q ss_pred CcccCCEEEcCccccCCHhHHHhCCCcEEEEeCcCCC----CCC--------CCCeEEEEEEeccCCCCchHHHHHHHHH
Q psy13471 3 NLVEENLYLGDLNDAMGLKSSNEANIKFVFSIGIFPT----LGK--------ISSLTYRHIEVADLPSEDLLSHFDSAYE 70 (249)
Q Consensus 3 ~~I~~~LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~----~~~--------~~~~~~~~i~i~D~~~~~l~~~~~~~~~ 70 (249)
.+|.+.+|+++..+..+.+.|+++||++|||+....+ +.. ..++.|+++|+..... + ........+
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~-~-~~~v~~f~~ 80 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI-T-PDDVETFRA 80 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC-C-HHHHHHHHH
Confidence 4788999999999999999999999999999997642 111 1589999999885432 1 223333334
Q ss_pred HHHHhhCCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCccc
Q psy13471 71 FIRESQSEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVIS 123 (249)
Q Consensus 71 fI~~~~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~ 123 (249)
+++ ...++||+||.+|. ||+++.+.++.. .|++.+++++..+..--.+.
T Consensus 81 ~~~--~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 81 AIG--AAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDLS 129 (135)
T ss_pred HHH--hCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCcc
Confidence 443 34699999999999 998887666655 78999999999887654443
No 15
>KOG2836|consensus
Probab=99.40 E-value=8.1e-12 Score=96.03 Aligned_cols=114 Identities=14% Similarity=0.187 Sum_probs=86.6
Q ss_pred HhHHHhCCCcEEEEeCcCCCCC---CCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHh---hCCCcEEEEecCCCchhH
Q psy13471 20 LKSSNEANIKFVFSIGIFPTLG---KISSLTYRHIEVADLPSEDLLSHFDSAYEFIRES---QSEGAILVHCYHGVSRSA 93 (249)
Q Consensus 20 ~~~L~~~gI~~Vl~l~~~~~~~---~~~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~---~~~~~VLVHC~~G~sRS~ 93 (249)
.+.|+++|+++|+-++...... .-.|+..+.++.+|...+. ....++-++.+.-. ..+..|-|||.+|.||++
T Consensus 34 ieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp-~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrap 112 (173)
T KOG2836|consen 34 IEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPP-NQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAP 112 (173)
T ss_pred HHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCc-hHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcch
Confidence 3779999999999999886432 2389999999999985443 23333334433333 578899999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHH
Q psy13471 94 TIVIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQ 136 (249)
Q Consensus 94 tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e 136 (249)
.+|+.-|+.. ||.+++|++++|++|..+ .|...+..|+.|.
T Consensus 113 vlvalalie~-gmkyedave~ir~krrga-~n~kql~~lekyr 153 (173)
T KOG2836|consen 113 VLVALALIEA-GMKYEDAVEMIRQKRRGA-INSKQLLYLEKYR 153 (173)
T ss_pred HHHHHHHHHc-cccHHHHHHHHHHHhhcc-ccHHHHHHHHHhC
Confidence 9887777765 999999999999999876 5666555555443
No 16
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.34 E-value=2.3e-12 Score=103.42 Aligned_cols=93 Identities=15% Similarity=0.238 Sum_probs=58.7
Q ss_pred CHhHHHhCCCcEEEEeCcCCC------CCC-----CCCeEEEEEEeccCCCCchHHHHHHHHHHHHHh-hCCCcEEEEec
Q psy13471 19 GLKSSNEANIKFVFSIGIFPT------LGK-----ISSLTYRHIEVADLPSEDLLSHFDSAYEFIRES-QSEGAILVHCY 86 (249)
Q Consensus 19 ~~~~L~~~gI~~Vl~l~~~~~------~~~-----~~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~-~~~~~VLVHC~ 86 (249)
|.+.|++.|++.|+++....+ +.. ..|+.++++||.|...+++. .+-+..+.|... .++++|+|||.
T Consensus 63 DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~-~~~~i~~eL~~~L~~g~~V~vHC~ 141 (168)
T PF05706_consen 63 DLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFA-AAWQILEELAARLENGRKVLVHCR 141 (168)
T ss_dssp HHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HH-HHHHHHHHHHHHHHTT--EEEE-S
T ss_pred HHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHH-HHHHHHHHHHHHHHcCCEEEEECC
Confidence 567899999999999987642 111 18999999999999888753 333556666666 88999999999
Q ss_pred CCCchhHHHHHHHHHHhC-CCCHHHHH
Q psy13471 87 HGVSRSATIVIAYLMKRD-DLGVQTAF 112 (249)
Q Consensus 87 ~G~sRS~tvv~AYLm~~~-~~s~~~Al 112 (249)
+|.+||+++++.+|+... .+++++|+
T Consensus 142 GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 142 GGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp SSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 999999999988888754 58999886
No 17
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.24 E-value=1e-10 Score=86.63 Aligned_cols=85 Identities=16% Similarity=0.257 Sum_probs=61.6
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHh----hCCCcEEEEecCCCchhHHHHHHHHHHhC------CCCHHHHHHHHHh
Q psy13471 48 YRHIEVADLPSEDLLSHFDSAYEFIRES----QSEGAILVHCYHGVSRSATIVIAYLMKRD------DLGVQTAFDRVKS 117 (249)
Q Consensus 48 ~~~i~i~D~~~~~l~~~~~~~~~fI~~~----~~~~~VLVHC~~G~sRS~tvv~AYLm~~~------~~s~~~Al~~vr~ 117 (249)
+.+.++.|...++....|.+.++.++.. ..+++|+|||.+|+|||++++++|++... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 3344444543333334555555555555 23789999999999999999999998753 3689999999999
Q ss_pred hCCcccCCHHHHHHH
Q psy13471 118 ARDVISPNEGFMHQL 132 (249)
Q Consensus 118 ~Rp~i~pn~gf~~qL 132 (249)
.||....+......+
T Consensus 85 ~r~~~~~~~~q~~~~ 99 (105)
T smart00012 85 QRPGMVQTFEQYLFL 99 (105)
T ss_pred hhhhhCCcHHHHHHH
Confidence 999988877665554
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.24 E-value=1e-10 Score=86.63 Aligned_cols=85 Identities=16% Similarity=0.257 Sum_probs=61.6
Q ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHh----hCCCcEEEEecCCCchhHHHHHHHHHHhC------CCCHHHHHHHHHh
Q psy13471 48 YRHIEVADLPSEDLLSHFDSAYEFIRES----QSEGAILVHCYHGVSRSATIVIAYLMKRD------DLGVQTAFDRVKS 117 (249)
Q Consensus 48 ~~~i~i~D~~~~~l~~~~~~~~~fI~~~----~~~~~VLVHC~~G~sRS~tvv~AYLm~~~------~~s~~~Al~~vr~ 117 (249)
+.+.++.|...++....|.+.++.++.. ..+++|+|||.+|+|||++++++|++... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 3344444543333334555555555555 23789999999999999999999998753 3689999999999
Q ss_pred hCCcccCCHHHHHHH
Q psy13471 118 ARDVISPNEGFMHQL 132 (249)
Q Consensus 118 ~Rp~i~pn~gf~~qL 132 (249)
.||....+......+
T Consensus 85 ~r~~~~~~~~q~~~~ 99 (105)
T smart00404 85 QRPGMVQTFEQYLFL 99 (105)
T ss_pred hhhhhCCcHHHHHHH
Confidence 999988877665554
No 19
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=99.18 E-value=2.7e-10 Score=89.49 Aligned_cols=111 Identities=21% Similarity=0.301 Sum_probs=86.1
Q ss_pred HhHHHhCCCcEEEEeCcCCC----CCCCCCeEEEEEEeccCCCCc------hHHHHHHHHHHHHHhhCCCcEEEEecCCC
Q psy13471 20 LKSSNEANIKFVFSIGIFPT----LGKISSLTYRHIEVADLPSED------LLSHFDSAYEFIRESQSEGAILVHCYHGV 89 (249)
Q Consensus 20 ~~~L~~~gI~~Vl~l~~~~~----~~~~~~~~~~~i~i~D~~~~~------l~~~~~~~~~fI~~~~~~~~VLVHC~~G~ 89 (249)
.+.-...|-+++|++..... +.....-.++.+-+.|...++ -..|....++|++++.+..++||||.+|+
T Consensus 25 ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGI 104 (172)
T COG5350 25 AETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGI 104 (172)
T ss_pred HHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeecccc
Confidence 45566789999999987532 222344466777777764332 14799999999999988999999999999
Q ss_pred chhHHHH-HHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHH
Q psy13471 90 SRSATIV-IAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMH 130 (249)
Q Consensus 90 sRS~tvv-~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~ 130 (249)
|||.+++ +|-|.....++..+..+.++..+|.+.||+..+.
T Consensus 105 SRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 105 SRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred ccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHH
Confidence 9986644 4455666789999999999999999999997654
No 20
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.17 E-value=1.3e-10 Score=88.18 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=56.9
Q ss_pred CcccCCEEEcCccccCCHhHHHhCCCcEEEEeCcCCC-CCCC-----------CCeEEEEEEeccCCCCchHHHHHHHHH
Q psy13471 3 NLVEENLYLGDLNDAMGLKSSNEANIKFVFSIGIFPT-LGKI-----------SSLTYRHIEVADLPSEDLLSHFDSAYE 70 (249)
Q Consensus 3 ~~I~~~LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~-~~~~-----------~~~~~~~i~i~D~~~~~l~~~~~~~~~ 70 (249)
.+|.+.+|+++.....+...|++.|+++|||+....+ +... .|+.|.++|+.-... . ...+....+
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~-~-~~~v~~f~~ 80 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAI-T-EEDVEAFAD 80 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT----HHHHHHHHH
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCC-C-HHHHHHHHH
Confidence 3688999999999999999999999999999997643 1111 799999999986532 2 344555445
Q ss_pred HHHHhhCCCcEEEEecCCCchhHHHHH
Q psy13471 71 FIRESQSEGAILVHCYHGVSRSATIVI 97 (249)
Q Consensus 71 fI~~~~~~~~VLVHC~~G~sRS~tvv~ 97 (249)
.+++ ..+|||+||..|. ||+++..
T Consensus 81 ~l~~--~~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 81 ALES--LPKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp HHHT--TTTSEEEE-SCSH-HHHHHHH
T ss_pred HHHh--CCCCEEEECCCCh-hHHHHHH
Confidence 5544 4689999999996 9877643
No 21
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.06 E-value=1.1e-09 Score=93.30 Aligned_cols=70 Identities=23% Similarity=0.351 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhh---CCCcEEEEecCCCchhHHHHHHHHHHhC-----CCCHHHHHHHHHhhCCcccCCHHHHHHH
Q psy13471 63 SHFDSAYEFIRESQ---SEGAILVHCYHGVSRSATIVIAYLMKRD-----DLGVQTAFDRVKSARDVISPNEGFMHQL 132 (249)
Q Consensus 63 ~~~~~~~~fI~~~~---~~~~VLVHC~~G~sRS~tvv~AYLm~~~-----~~s~~~Al~~vr~~Rp~i~pn~gf~~qL 132 (249)
..|...++.++... .+++|+|||.+|+||||++++++++... .+++.+++..+|+.|+.+..+......+
T Consensus 148 ~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~~~~Qy~f~ 225 (231)
T cd00047 148 DSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQTEEQYIFL 225 (231)
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 34444444444442 4789999999999999999999876543 6899999999999999988887665554
No 22
>PLN02727 NAD kinase
Probab=99.02 E-value=1.6e-09 Score=106.36 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=79.7
Q ss_pred CEEEcCccccCCHhHHHhCCCcEEEEeCcCCCCC-CC----------CCeEEEEEEeccCCCCchHHHHHHHHHHHHHhh
Q psy13471 8 NLYLGDLNDAMGLKSSNEANIKFVFSIGIFPTLG-KI----------SSLTYRHIEVADLPSEDLLSHFDSAYEFIRESQ 76 (249)
Q Consensus 8 ~LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~~~-~~----------~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~~ 76 (249)
.+|+|++++..+.+.|.+.||++|||+..+.... .. .|++|+++|+.+..... .+.+.++.+++++ .
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt-~EqVe~fa~~l~~-s 339 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPS-AEQVEKFASLVSD-S 339 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCC-HHHHHHHHHHHHh-h
Confidence 4899999999999999999999999998876421 11 68999999997765444 4556666666633 3
Q ss_pred CCCcEEEEecCCCchhHHHHHHHHHHhCCCCH
Q psy13471 77 SEGAILVHCYHGVSRSATIVIAYLMKRDDLGV 108 (249)
Q Consensus 77 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~ 108 (249)
.++|||+||..|..|++++++.|+.+.-+...
T Consensus 340 lpkPVLvHCKSGarRAGamvA~yl~~~~~~~~ 371 (986)
T PLN02727 340 SKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAE 371 (986)
T ss_pred cCCCEEEECCCCCchHHHHHHHHHHHHcccch
Confidence 58999999999999999999999998776543
No 23
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.98 E-value=3.2e-09 Score=92.12 Aligned_cols=70 Identities=24% Similarity=0.374 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhh--CCCcEEEEecCCCchhHHHHHHHHHHh-----CCCCHHHHHHHHHhhCCcccCCHHHHHHH
Q psy13471 63 SHFDSAYEFIRESQ--SEGAILVHCYHGVSRSATIVIAYLMKR-----DDLGVQTAFDRVKSARDVISPNEGFMHQL 132 (249)
Q Consensus 63 ~~~~~~~~fI~~~~--~~~~VLVHC~~G~sRS~tvv~AYLm~~-----~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL 132 (249)
..|.+.+..++... .+++|+|||.+|+||||++++++++.. ..+++.+++..+|..|+.+-.+..+..-+
T Consensus 176 ~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~~Qy~f~ 252 (258)
T smart00194 176 KSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEEQYIFL 252 (258)
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 34444444444442 278999999999999999999987743 46899999999999999998888776655
No 24
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.94 E-value=2.1e-09 Score=87.23 Aligned_cols=107 Identities=18% Similarity=0.306 Sum_probs=58.2
Q ss_pred cccCC-EEEcCcccc---CCHhHHHhCCCcEEEEeCcCCC----C-CCCCCeEEEEEEeccCCCCc---h----------
Q psy13471 4 LVEEN-LYLGDLNDA---MGLKSSNEANIKFVFSIGIFPT----L-GKISSLTYRHIEVADLPSED---L---------- 61 (249)
Q Consensus 4 ~I~~~-LylG~~~~a---~~~~~L~~~gI~~Vl~l~~~~~----~-~~~~~~~~~~i~i~D~~~~~---l---------- 61 (249)
.|-+| ||.++.... .+.+.|.++||++||++....+ | ....++++.++|+.+..... +
T Consensus 15 ~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 94 (164)
T PF13350_consen 15 RIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADA 94 (164)
T ss_dssp TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHH
T ss_pred eecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccch
Confidence 35566 899886653 3567899999999999998753 2 34479999999998765441 1
Q ss_pred H---------------HHHHHHHHHHHHhhCCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHH
Q psy13471 62 L---------------SHFDSAYEFIRESQSEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFD 113 (249)
Q Consensus 62 ~---------------~~~~~~~~fI~~~~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~ 113 (249)
. +.+.++++.|.+ ..++|||||.+|..|||.++ |.|+...|.+.++..+
T Consensus 95 ~~~~~~~Y~~~~~~~~~~~~~~~~~l~~--~~~p~l~HC~aGKDRTG~~~-alll~~lGV~~~~I~~ 158 (164)
T PF13350_consen 95 PRGMLEFYREMLESYAEAYRKIFELLAD--APGPVLFHCTAGKDRTGVVA-ALLLSLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHHHGGGSTHHHHHHHHHHHH---TT--EEEE-SSSSSHHHHHH-HHHHHHTT--HHHHHH
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhcc--CCCcEEEECCCCCccHHHHH-HHHHHHcCCCHHHHHH
Confidence 0 112233333332 34799999999999997655 5556677998877654
No 25
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.82 E-value=8.9e-08 Score=72.41 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=78.8
Q ss_pred cccCCEEEcCccccCCHhHHHhCCCcEEEEeCcCCC-CCCC-----------CCeEEEEEEeccCCCCchHHHHHHHHHH
Q psy13471 4 LVEENLYLGDLNDAMGLKSSNEANIKFVFSIGIFPT-LGKI-----------SSLTYRHIEVADLPSEDLLSHFDSAYEF 71 (249)
Q Consensus 4 ~I~~~LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~-~~~~-----------~~~~~~~i~i~D~~~~~l~~~~~~~~~f 71 (249)
+|.+.|++++..+..|...++.+|++.|||-....+ +..+ .|+.|.+||+.-..... ..++...+-
T Consensus 5 ~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~--~dV~~f~~A 82 (130)
T COG3453 5 RINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITE--ADVEAFQRA 82 (130)
T ss_pred ecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCH--HHHHHHHHH
Confidence 688899999999999999999999999999987653 2111 78999999998643221 223333333
Q ss_pred HHHhhCCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHh
Q psy13471 72 IRESQSEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKS 117 (249)
Q Consensus 72 I~~~~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~ 117 (249)
++ ..+||||.||..| .||.++-..-. ...||+.++..++=+.
T Consensus 83 l~--eaegPVlayCrsG-tRs~~ly~~~~-~~~gm~~de~~a~g~a 124 (130)
T COG3453 83 LD--EAEGPVLAYCRSG-TRSLNLYGLGE-LDGGMSRDEIEALGQA 124 (130)
T ss_pred HH--HhCCCEEeeecCC-chHHHHHHHHH-HhcCCCHHHHHHHHHh
Confidence 33 4589999999999 58865433333 5679999988776554
No 26
>KOG1572|consensus
Probab=98.80 E-value=5.5e-08 Score=81.89 Aligned_cols=113 Identities=15% Similarity=0.229 Sum_probs=88.7
Q ss_pred cccCCEEEcCccccCCHhHHHhCCCcEEEEeCcCCCCCCC------CCeEEEEEEeccCC------CCch-HHHHHHHHH
Q psy13471 4 LVEENLYLGDLNDAMGLKSSNEANIKFVFSIGIFPTLGKI------SSLTYRHIEVADLP------SEDL-LSHFDSAYE 70 (249)
Q Consensus 4 ~I~~~LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~~~~~------~~~~~~~i~i~D~~------~~~l-~~~~~~~~~ 70 (249)
-|.++||.|+.+...+..+|+.++.++||+++.++.+... .++++.+|-+.... ..++ ...+..+++
T Consensus 62 ~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l~ 141 (249)
T KOG1572|consen 62 MVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKALK 141 (249)
T ss_pred ccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHHH
Confidence 3677899999999999999999999999999999754321 78899999887443 2333 344777777
Q ss_pred HHHHhhCCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhh
Q psy13471 71 FIRESQSEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSA 118 (249)
Q Consensus 71 fI~~~~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~ 118 (249)
++-. ..+.++||||..|.-|++++|...- +.++|++...+..-+..
T Consensus 142 ~lld-~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~f 187 (249)
T KOG1572|consen 142 VLLD-KRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRF 187 (249)
T ss_pred HHhc-ccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHh
Confidence 7433 5899999999999999999886665 77889988777654443
No 27
>KOG2283|consensus
Probab=98.75 E-value=1.9e-08 Score=92.98 Aligned_cols=137 Identities=16% Similarity=0.214 Sum_probs=101.4
Q ss_pred CCCcccCCEEEcCccccCCHhHHHhCCCcEEEEeCcCCC--CCCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHh---
Q psy13471 1 MPNLVEENLYLGDLNDAMGLKSSNEANIKFVFSIGIFPT--LGKISSLTYRHIEVADLPSEDLLSHFDSAYEFIRES--- 75 (249)
Q Consensus 1 ~P~~I~~~LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~--~~~~~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~--- 75 (249)
||.+..+.+|..++.+....-.-+..|--.|.|++.+.. +..+.+ ....++++|...+. +..+..+++-++.+
T Consensus 27 fPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g-~V~~~~~~Dh~~P~-L~~l~~~c~~~~~WL~~ 104 (434)
T KOG2283|consen 27 FPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHG-RVARFGFDDHNPPP-LELLCPFCKSMDNWLSE 104 (434)
T ss_pred CCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCcccccc-ceeecCCCCCCCCc-HHHHHHHHHCHHHHHhc
Confidence 466666667777777664332233456777899997542 122222 34557888887776 67788888888888
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCCC-HHHHHHHHHhhC---C--cccCCHHHHHHHHHHHHhc
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDLG-VQTAFDRVKSAR---D--VISPNEGFMHQLALYQRMR 139 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s-~~~Al~~vr~~R---p--~i~pn~gf~~qL~~~e~~~ 139 (249)
+....|.|||.+|.+|||++++||||+..-.. .++|+.+.-++| . ...--+...+.+.-|+.++
T Consensus 105 d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y~~~~l 174 (434)
T KOG2283|consen 105 DPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGYFSRVL 174 (434)
T ss_pred CccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHHHHHHh
Confidence 77889999999999999999999999987664 999999999999 3 2455667788888888753
No 28
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.62 E-value=2.6e-07 Score=85.96 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=50.6
Q ss_pred cEEEEecCCCchhHHHHHHHHHHhCC-CCHHHHHHHHHhhCCc-ccCCHHHHHHHHHHHHh
Q psy13471 80 AILVHCYHGVSRSATIVIAYLMKRDD-LGVQTAFDRVKSARDV-ISPNEGFMHQLALYQRM 138 (249)
Q Consensus 80 ~VLVHC~~G~sRS~tvv~AYLm~~~~-~s~~~Al~~vr~~Rp~-i~pn~gf~~qL~~~e~~ 138 (249)
.++|||.+|+||||+++++|+|+..+ .++++.+..+|..|+. +--+..++..|...+..
T Consensus 468 ~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng~MVQt~eQy~~l~~~~~~ 528 (535)
T PRK15375 468 LPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNNRMLEDASQFVQLKAMQAQ 528 (535)
T ss_pred CceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCccccccHHHHHHHHHHHHH
Confidence 34799999999999999999997544 6999999999999997 77888888888776654
No 29
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.53 E-value=5.4e-07 Score=80.22 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=42.4
Q ss_pred CCcEEEEecCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHhhCCcccCCHHHH
Q psy13471 78 EGAILVHCYHGVSRSATIVIAYLMK-----RDDLGVQTAFDRVKSARDVISPNEGFM 129 (249)
Q Consensus 78 ~~~VLVHC~~G~sRS~tvv~AYLm~-----~~~~s~~~Al~~vr~~Rp~i~pn~gf~ 129 (249)
.+||+|||.+|+||||++++...+. ....++.+++..+|+.|+..-.+....
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY 285 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQY 285 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHH
Confidence 4799999999999999988776553 235588999999999999877776543
No 30
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.52 E-value=4.8e-07 Score=76.54 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=54.9
Q ss_pred HHHHHHHHHHh-----hCCCcEEEEecCCCchhHHHHHHHHHHh-----CCCCHHHHHHHHHhhCCcccCCHHHHHHHH
Q psy13471 65 FDSAYEFIRES-----QSEGAILVHCYHGVSRSATIVIAYLMKR-----DDLGVQTAFDRVKSARDVISPNEGFMHQLA 133 (249)
Q Consensus 65 ~~~~~~fI~~~-----~~~~~VLVHC~~G~sRS~tvv~AYLm~~-----~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~ 133 (249)
....++|++.. ..+++|+|||.+|+||||+++++.+|.. ...++.+++..+|+.|+.+-.+...+..+.
T Consensus 152 ~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~ 230 (235)
T PF00102_consen 152 PESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCY 230 (235)
T ss_dssp SHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHH
T ss_pred cchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHH
Confidence 44445555554 3679999999999999999998887753 357999999999999999999987665553
No 31
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.51 E-value=8.9e-07 Score=78.62 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=43.1
Q ss_pred CCCcEEEEecCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHhhCCcccCCHHH
Q psy13471 77 SEGAILVHCYHGVSRSATIVIAYLMK-----RDDLGVQTAFDRVKSARDVISPNEGF 128 (249)
Q Consensus 77 ~~~~VLVHC~~G~sRS~tvv~AYLm~-----~~~~s~~~Al~~vr~~Rp~i~pn~gf 128 (249)
..+||+|||.+|+||||++++...+. ...+++.+++..+|+.|+..-.+...
T Consensus 220 ~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~Q 276 (298)
T PHA02740 220 KIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDD 276 (298)
T ss_pred CCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHH
Confidence 35899999999999999988766553 44669999999999999987777643
No 32
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.47 E-value=1e-06 Score=78.75 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=44.5
Q ss_pred CcEEEEecCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHhhCCcccCCHHHHHHH
Q psy13471 79 GAILVHCYHGVSRSATIVIAYLMK-----RDDLGVQTAFDRVKSARDVISPNEGFMHQL 132 (249)
Q Consensus 79 ~~VLVHC~~G~sRS~tvv~AYLm~-----~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL 132 (249)
+||+|||.+|+||||++++..++. ...+++.+++..+|..|+..-.+.....-+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 799999999999999998776432 346799999999999999988887554443
No 33
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.46 E-value=6.2e-07 Score=71.72 Aligned_cols=58 Identities=22% Similarity=0.452 Sum_probs=45.1
Q ss_pred CCeEEEEEEeccCCCCchHHHHHHHHHHHHHhhCCCcEEEEecCCCchhHHHHHHHHHH
Q psy13471 44 SSLTYRHIEVADLPSEDLLSHFDSAYEFIRESQSEGAILVHCYHGVSRSATIVIAYLMK 102 (249)
Q Consensus 44 ~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~~~~~~VLVHC~~G~sRS~tvv~AYLm~ 102 (249)
.++.|.+||+.|...++ .+.|+..++|+....++..+.+||.+|.|||.+..+.|.|.
T Consensus 91 ~g~~Y~Ripitd~~~P~-~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 91 NGLRYYRIPITDHQAPD-PEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp TT-EEEEEEE-TTS----HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCcCCCC-HHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999997665 78899999999999778999999999999998888777664
No 34
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.45 E-value=9.5e-07 Score=79.35 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=43.0
Q ss_pred CcEEEEecCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHhhCCcccCCHHHHH
Q psy13471 79 GAILVHCYHGVSRSATIVIAYLMK-----RDDLGVQTAFDRVKSARDVISPNEGFMH 130 (249)
Q Consensus 79 ~~VLVHC~~G~sRS~tvv~AYLm~-----~~~~s~~~Al~~vr~~Rp~i~pn~gf~~ 130 (249)
+||+|||.+|+||||++++...+. ...+++.+++..+|..|+..-.+.....
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~ 304 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYA 304 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHH
Confidence 799999999999999988765432 3467999999999999998888775433
No 35
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.44 E-value=2.6e-06 Score=79.37 Aligned_cols=131 Identities=21% Similarity=0.323 Sum_probs=101.4
Q ss_pred ccCCEEEcCccccCCH----hHHHhCCCcEEEEeCcCCC--CCCCCCeEEEEEEeccCC--CCchHHHHHHHHHHHHHh-
Q psy13471 5 VEENLYLGDLNDAMGL----KSSNEANIKFVFSIGIFPT--LGKISSLTYRHIEVADLP--SEDLLSHFDSAYEFIRES- 75 (249)
Q Consensus 5 I~~~LylG~~~~a~~~----~~L~~~gI~~Vl~l~~~~~--~~~~~~~~~~~i~i~D~~--~~~l~~~~~~~~~fI~~~- 75 (249)
+.++||+|.....-.. ..-.......||++..... ........++++++.... ..+|...++++++|+...
T Consensus 292 ~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L 371 (451)
T PF04179_consen 292 GTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHL 371 (451)
T ss_pred CCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 3568999998873211 1122457789999987763 233467789999998764 456788999999999998
Q ss_pred hC--CCcEEEEecCCCchhHHHHHHHHHHhCCCC----------------HHHHHHHHHhhCCcccCCHHHHHHHHHH
Q psy13471 76 QS--EGAILVHCYHGVSRSATIVIAYLMKRDDLG----------------VQTAFDRVKSARDVISPNEGFMHQLALY 135 (249)
Q Consensus 76 ~~--~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s----------------~~~Al~~vr~~Rp~i~pn~gf~~qL~~~ 135 (249)
.. +.+|||+|..|...|+.+++|.|+..++.. ..+-|..|-+.+|.+.|..+.+++...|
T Consensus 372 ~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 372 SSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred cccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 44 899999999999999999999999987542 3446777888889999999998887765
No 36
>PHA02738 hypothetical protein; Provisional
Probab=98.42 E-value=1.6e-06 Score=77.87 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=43.2
Q ss_pred CCcEEEEecCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHhhCCcccCCHHHHHH
Q psy13471 78 EGAILVHCYHGVSRSATIVIAYLMK-----RDDLGVQTAFDRVKSARDVISPNEGFMHQ 131 (249)
Q Consensus 78 ~~~VLVHC~~G~sRS~tvv~AYLm~-----~~~~s~~~Al~~vr~~Rp~i~pn~gf~~q 131 (249)
.+||+|||.+|+||||++++...+. ....++.+++..+|..|+..-.+.....-
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F 285 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFF 285 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHH
Confidence 4799999999999999977665432 34568999999999999988777765443
No 37
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.15 E-value=7.1e-06 Score=70.38 Aligned_cols=47 Identities=32% Similarity=0.509 Sum_probs=34.2
Q ss_pred eccCCCCchHHHHHHHHHHHHHh--h--CCCcEEEEecCCCchhHHHHHHHHHHh
Q psy13471 53 VADLPSEDLLSHFDSAYEFIRES--Q--SEGAILVHCYHGVSRSATIVIAYLMKR 103 (249)
Q Consensus 53 i~D~~~~~l~~~~~~~~~fI~~~--~--~~~~VLVHC~~G~sRS~tvv~AYLm~~ 103 (249)
+.|...++ +.+..++++.. . +.++++|||.||+||+||+++.-.+..
T Consensus 193 W~D~~~p~----i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~ 243 (302)
T COG5599 193 WVDFNVPD----IRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLR 243 (302)
T ss_pred ccccCCcC----HHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHh
Confidence 34554444 56667777776 2 789999999999999999876664443
No 38
>KOG0792|consensus
Probab=98.09 E-value=9.9e-06 Score=80.47 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHh-hC-CCcEEEEecCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHhhCCcccCCHHHH
Q psy13471 62 LSHFDSAYEFIRES-QS-EGAILVHCYHGVSRSATIVIAYLMK-----RDDLGVQTAFDRVKSARDVISPNEGFM 129 (249)
Q Consensus 62 ~~~~~~~~~fI~~~-~~-~~~VLVHC~~G~sRS~tvv~AYLm~-----~~~~s~~~Al~~vr~~Rp~i~pn~gf~ 129 (249)
.++|-+.++.|+.. .. +-||+|||.+|+||||+++++=+|. ...+.+-+.++.+|..|-.+.++.+.+
T Consensus 1045 ~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT~~QY 1119 (1144)
T KOG0792|consen 1045 PNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQTLSQY 1119 (1144)
T ss_pred hHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccchHHh
Confidence 45555555555555 33 5699999999999999987554443 346788899999999999888888643
No 39
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.05 E-value=1.6e-05 Score=68.91 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=46.8
Q ss_pred CCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHH
Q psy13471 77 SEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQ 136 (249)
Q Consensus 77 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e 136 (249)
+++|||+||.+|..|+|.+++.|++...+.....+-+++..-++......+-..+.....
T Consensus 135 e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~~~~~~~~~~~ 194 (249)
T COG2365 135 ENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRGILEYVSEKL 194 (249)
T ss_pred ccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhHHHHHHHhhcc
Confidence 359999999999999999999999999888877888888877776655553334444333
No 40
>KOG2386|consensus
Probab=97.96 E-value=1.7e-05 Score=72.18 Aligned_cols=133 Identities=16% Similarity=0.269 Sum_probs=91.5
Q ss_pred HhHHHhC--CCcEEEEeCcCCC---CCC--CCCeEEEEEEecc---CCCCchHHHHHH-HHHHHHHh-hCCCcEEEEecC
Q psy13471 20 LKSSNEA--NIKFVFSIGIFPT---LGK--ISSLTYRHIEVAD---LPSEDLLSHFDS-AYEFIRES-QSEGAILVHCYH 87 (249)
Q Consensus 20 ~~~L~~~--gI~~Vl~l~~~~~---~~~--~~~~~~~~i~i~D---~~~~~l~~~~~~-~~~fI~~~-~~~~~VLVHC~~ 87 (249)
...|+++ .+.-++++..... ... ..++.|+.+.-.- .+.......|.. .-+|++.. ..+.-|+|||.+
T Consensus 54 ~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcth 133 (393)
T KOG2386|consen 54 FELLKEHNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTH 133 (393)
T ss_pred HHHHHhcCceEEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCC
Confidence 3455554 5677788876652 111 2455565544432 233333334444 34466655 788999999999
Q ss_pred CCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHhcCCCCCCChhHHHH
Q psy13471 88 GVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQRMRMTLDLNFTPYKLY 152 (249)
Q Consensus 88 G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e~~~~~~~~~~~~~~~~ 152 (249)
|.+|++-++.+|||...+++..+|++.+...||...--...+..|...+.--.+...+.|.-..|
T Consensus 134 G~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~~p~~vs~p~~~~~ 198 (393)
T KOG2386|consen 134 GLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDIFPFKVSCPSMPDW 198 (393)
T ss_pred cccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcccccccccccCCCCcch
Confidence 99999999999999999999999999999999988888888888887776544444444433333
No 41
>KOG0790|consensus
Probab=97.72 E-value=6.2e-05 Score=68.84 Aligned_cols=111 Identities=23% Similarity=0.340 Sum_probs=65.2
Q ss_pred CHhHHHhCCCcEEEEeCcCCCCC---------------CC-CCeEEEEEEeccC--CCCc--hHHHHHHHHHHHHHh-hC
Q psy13471 19 GLKSSNEANIKFVFSIGIFPTLG---------------KI-SSLTYRHIEVADL--PSED--LLSHFDSAYEFIRES-QS 77 (249)
Q Consensus 19 ~~~~L~~~gI~~Vl~l~~~~~~~---------------~~-~~~~~~~i~i~D~--~~~~--l~~~~~~~~~fI~~~-~~ 77 (249)
+...++.+|+-+|=|+....... .. .-+.|+.+-++|. |... .+..+++...- ++. ..
T Consensus 372 ee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~r-q~~l~~ 450 (600)
T KOG0790|consen 372 EEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHR-QESLMD 450 (600)
T ss_pred cccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhh-hccccc
Confidence 34567888998888887643100 00 1123444444444 3222 23333332222 111 44
Q ss_pred CCcEEEEecCCCchhHHHH-HHHHH---HhCC----CCHHHHHHHHHhhCCcccCCHHHHH
Q psy13471 78 EGAILVHCYHGVSRSATIV-IAYLM---KRDD----LGVQTAFDRVKSARDVISPNEGFMH 130 (249)
Q Consensus 78 ~~~VLVHC~~G~sRS~tvv-~AYLm---~~~~----~s~~~Al~~vr~~Rp~i~pn~gf~~ 130 (249)
-|+|.|||.||++|++|++ |--|| ++.| +++...+++||..|...--.....+
T Consensus 451 AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYk 511 (600)
T KOG0790|consen 451 AGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYK 511 (600)
T ss_pred cCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHH
Confidence 5799999999999999954 44444 3444 4889999999999987655554433
No 42
>KOG0789|consensus
Probab=97.62 E-value=0.00023 Score=65.66 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=45.9
Q ss_pred HHHHHHHHH----Hh-hCCCcEEEEecCCCchhHHHHHHH-HHHh--C---CCCHHHHHHHHHhhCCcccCCHHHH
Q psy13471 65 FDSAYEFIR----ES-QSEGAILVHCYHGVSRSATIVIAY-LMKR--D---DLGVQTAFDRVKSARDVISPNEGFM 129 (249)
Q Consensus 65 ~~~~~~fI~----~~-~~~~~VLVHC~~G~sRS~tvv~AY-Lm~~--~---~~s~~~Al~~vr~~Rp~i~pn~gf~ 129 (249)
...++.++. .. ...+++.|||.+|+||+|++++.. .+.. . .....+.+..+|..|+.+..+..+.
T Consensus 281 ~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy 356 (415)
T KOG0789|consen 281 VKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQY 356 (415)
T ss_pred hHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHH
Confidence 445555553 22 457899999999999999998655 3332 1 2358888888999998777666544
No 43
>KOG0791|consensus
Probab=97.39 E-value=0.0021 Score=57.71 Aligned_cols=89 Identities=25% Similarity=0.368 Sum_probs=54.0
Q ss_pred CCCeEEEEEEeccCC--CCchHHHHHHHHHHHHHhhCCCcEEEEecCCCchhHHHHHHH-HHHhCC----CCHHHHHHHH
Q psy13471 43 ISSLTYRHIEVADLP--SEDLLSHFDSAYEFIRESQSEGAILVHCYHGVSRSATIVIAY-LMKRDD----LGVQTAFDRV 115 (249)
Q Consensus 43 ~~~~~~~~i~i~D~~--~~~l~~~~~~~~~fI~~~~~~~~VLVHC~~G~sRS~tvv~AY-Lm~~~~----~s~~~Al~~v 115 (249)
.-.+.|..+|....+ ...+++.+...-+.+. ...++++|||.+|++||+|+.+.- |.+..+ .+.-..+..+
T Consensus 252 ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~--~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~l 329 (374)
T KOG0791|consen 252 IRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLD--TSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLEL 329 (374)
T ss_pred eEEEEEeeccccCCCCCchhHHHHHHHHHhhcc--cCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHh
Confidence 344455555544444 2222333332222222 348899999999999999987655 333322 3455677777
Q ss_pred HhhCCcccCCHHHHHHHH
Q psy13471 116 KSARDVISPNEGFMHQLA 133 (249)
Q Consensus 116 r~~Rp~i~pn~gf~~qL~ 133 (249)
|..|+..-+|...+-.|.
T Consensus 330 R~~R~~mVqte~Qyvfl~ 347 (374)
T KOG0791|consen 330 RSARMLMVQTEDQYVFLH 347 (374)
T ss_pred hhccccccchHHHHHHHH
Confidence 888888888876555553
No 44
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=97.15 E-value=0.0032 Score=49.70 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=53.9
Q ss_pred cccCC-EEEcCccccCCHhHHHhCCCcEEEEeCcCCCCCCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHh----hCC
Q psy13471 4 LVEEN-LYLGDLNDAMGLKSSNEANIKFVFSIGIFPTLGKISSLTYRHIEVADLPSEDLLSHFDSAYEFIRES----QSE 78 (249)
Q Consensus 4 ~I~~~-LylG~~~~a~~~~~L~~~gI~~Vl~l~~~~~~~~~~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~----~~~ 78 (249)
||+++ ||.+.... ..++..-+|-.++..+-.-+.+ -.|...-+ +.++-+.+.-+++. ...
T Consensus 2 E~i~drLyf~~~~~-----~p~~~~~~~yF~iD~~l~Y~~F---------~~DFGPln-L~~lyrfc~~l~~~L~~~~~~ 66 (141)
T PF14671_consen 2 EIIPDRLYFASLRN-----KPKSTPNTHYFSIDDELVYENF---------YADFGPLN-LAQLYRFCCKLNKKLKSPELK 66 (141)
T ss_dssp --SSSSEEEEE-SS---------BTTEEEEE-TTTS----S---------SS-------HHHHHHHHHHHHHHHH-GGGT
T ss_pred CCCCCcEEEEEeCC-----CCCCCCCcEEEEeCCeEEEecc---------cCcCCCcc-HHHHHHHHHHHHHHHcCHHhc
Confidence 34444 88777665 2233344566666654311111 12444444 45555555555555 457
Q ss_pred CcEEEEecCCCch----hHHHHHHHHHHhCCCCHHHHHHHHHhhCC
Q psy13471 79 GAILVHCYHGVSR----SATIVIAYLMKRDDLGVQTAFDRVKSARD 120 (249)
Q Consensus 79 ~~VLVHC~~G~sR----S~tvv~AYLm~~~~~s~~~Al~~vr~~Rp 120 (249)
++.+|||++.-.+ +|.++.+|+|-..+||+++|++-+...-|
T Consensus 67 ~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 67 KKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp TSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 8899999876554 57789999999999999999999987753
No 45
>KOG4228|consensus
Probab=96.68 E-value=0.0026 Score=64.16 Aligned_cols=73 Identities=18% Similarity=0.362 Sum_probs=48.4
Q ss_pred EEeccCCCCchHHHHHHHHHHHHHh---h--CCCcEEEEecCCCchhHHHHHHH-----HHHhCCCCHHHHHHHHHhhCC
Q psy13471 51 IEVADLPSEDLLSHFDSAYEFIRES---Q--SEGAILVHCYHGVSRSATIVIAY-----LMKRDDLGVQTAFDRVKSARD 120 (249)
Q Consensus 51 i~i~D~~~~~l~~~~~~~~~fI~~~---~--~~~~VLVHC~~G~sRS~tvv~AY-----Lm~~~~~s~~~Al~~vr~~Rp 120 (249)
+.....++.....+--..++|++.. . ..|+++|||.+|+||||++++-- ++.....+...-+..+|..|+
T Consensus 698 fhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~ 777 (1087)
T KOG4228|consen 698 FHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRN 777 (1087)
T ss_pred eeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccc
Confidence 3333444444444555667787777 2 56999999999999999965433 333445577777777888887
Q ss_pred ccc
Q psy13471 121 VIS 123 (249)
Q Consensus 121 ~i~ 123 (249)
..-
T Consensus 778 ~mV 780 (1087)
T KOG4228|consen 778 NMV 780 (1087)
T ss_pred ccc
Confidence 543
No 46
>KOG0793|consensus
Probab=95.96 E-value=0.021 Score=55.31 Aligned_cols=67 Identities=19% Similarity=0.461 Sum_probs=45.2
Q ss_pred HHHHHHHHHh-----hCCCcEEEEecCCCchhHHHHHHHHHH------hCCCCHHHHHHHHHhhCCc-ccCCHHHHHHH
Q psy13471 66 DSAYEFIRES-----QSEGAILVHCYHGVSRSATIVIAYLMK------RDDLGVQTAFDRVKSARDV-ISPNEGFMHQL 132 (249)
Q Consensus 66 ~~~~~fI~~~-----~~~~~VLVHC~~G~sRS~tvv~AYLm~------~~~~s~~~Al~~vr~~Rp~-i~pn~gf~~qL 132 (249)
...++|-.+. .+.-+|+|||..|-+||++.++--+.. ...++....++.+|..||. +.-.+.|.-.|
T Consensus 910 rslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQFef~l 988 (1004)
T KOG0793|consen 910 RSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQFEFAL 988 (1004)
T ss_pred HHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhhHHHH
Confidence 4455555554 557899999999999999954333221 1245888899999999996 44444444333
No 47
>KOG4228|consensus
Probab=95.30 E-value=0.042 Score=55.80 Aligned_cols=50 Identities=22% Similarity=0.428 Sum_probs=37.6
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHh-----CCCCHHHHHHHHHhhCCcccCC
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKR-----DDLGVQTAFDRVKSARDVISPN 125 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~-----~~~s~~~Al~~vr~~Rp~i~pn 125 (249)
...+++.|||..|++||++++++-+... .-++.-++.+.+|..||.+.-.
T Consensus 1016 ~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t 1070 (1087)
T KOG4228|consen 1016 GADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDT 1070 (1087)
T ss_pred cCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCc
Confidence 4489999999999999999876654432 2347778888888888865433
No 48
>KOG4471|consensus
Probab=94.27 E-value=0.12 Score=49.50 Aligned_cols=36 Identities=31% Similarity=0.541 Sum_probs=26.7
Q ss_pred HHHHHHHHh-hCCCcEEEEecCCCchhHHHH-HHHHHH
Q psy13471 67 SAYEFIRES-QSEGAILVHCYHGVSRSATIV-IAYLMK 102 (249)
Q Consensus 67 ~~~~fI~~~-~~~~~VLVHC~~G~sRS~tvv-~AYLm~ 102 (249)
.++...+.. ..+.+|||||..|-.|++-++ +|-||.
T Consensus 362 ga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 362 GAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 344444444 778999999999999998765 566664
No 49
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=91.07 E-value=0.69 Score=33.66 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=19.7
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCCC
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDLG 107 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s 107 (249)
.++.+|+|+|..| .||... +.+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCCc
Confidence 5678999999998 588654 2333 455553
No 50
>KOG1089|consensus
Probab=88.39 E-value=1.6 Score=41.95 Aligned_cols=46 Identities=26% Similarity=0.463 Sum_probs=30.6
Q ss_pred CCchHHHHHHHHH---HHHHh--hCCCcEEEEecCCCchhHHHH-HHHHHHh
Q psy13471 58 SEDLLSHFDSAYE---FIRES--QSEGAILVHCYHGVSRSATIV-IAYLMKR 103 (249)
Q Consensus 58 ~~~l~~~~~~~~~---fI~~~--~~~~~VLVHC~~G~sRS~tvv-~AYLm~~ 103 (249)
..+.+.++..+++ +|-+. .++-+|||||..|..|+.-|+ +|-||..
T Consensus 319 ~SgWL~~i~~~L~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllLD 370 (573)
T KOG1089|consen 319 SSGWLKHIRAILKAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLLD 370 (573)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHhC
Confidence 3444555554444 44444 467899999999999987655 5556654
No 51
>PLN02160 thiosulfate sulfurtransferase
Probab=86.78 E-value=1.7 Score=33.82 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=38.7
Q ss_pred hCCCcEEEEeCcCCC--CCCCCCeEEEEEEeccCC-CCchHHHHHHHHHHHHHh-hCCCcEEEEecCCCchhHHHHHHHH
Q psy13471 25 EANIKFVFSIGIFPT--LGKISSLTYRHIEVADLP-SEDLLSHFDSAYEFIRES-QSEGAILVHCYHGVSRSATIVIAYL 100 (249)
Q Consensus 25 ~~gI~~Vl~l~~~~~--~~~~~~~~~~~i~i~D~~-~~~l~~~~~~~~~fI~~~-~~~~~VLVHC~~G~sRS~tvv~AYL 100 (249)
+.+ ..||++..... ...+.+-....+|..+.. ...+.. .+....+.+. ..+.+|+|||..| .||... +..
T Consensus 27 ~~~-~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~--~~~~~~~~~~~~~~~~IivyC~sG-~RS~~A--a~~ 100 (136)
T PLN02160 27 QSG-HQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKN--QEFLEQVSSLLNPADDILVGCQSG-ARSLKA--TTE 100 (136)
T ss_pred hCC-CEEEECCCHHHHhcCCCCCcceecccchhcCcccccCC--HHHHHHHHhccCCCCcEEEECCCc-HHHHHH--HHH
Confidence 345 36889887753 223333224556653321 111110 0111112222 5678999999999 588654 333
Q ss_pred HHhCCCC
Q psy13471 101 MKRDDLG 107 (249)
Q Consensus 101 m~~~~~s 107 (249)
+...|.+
T Consensus 101 L~~~G~~ 107 (136)
T PLN02160 101 LVAAGYK 107 (136)
T ss_pred HHHcCCC
Confidence 3555654
No 52
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=85.71 E-value=2.2 Score=31.04 Aligned_cols=69 Identities=20% Similarity=0.191 Sum_probs=40.2
Q ss_pred HHHhCCCcEEEEeCcCCCCCCCCCeE-EEEEEeccCCCCc-hHHHHHHHHHHHHHhhCCCcEEEEecCCCchhHHHHHHH
Q psy13471 22 SSNEANIKFVFSIGIFPTLGKISSLT-YRHIEVADLPSED-LLSHFDSAYEFIRESQSEGAILVHCYHGVSRSATIVIAY 99 (249)
Q Consensus 22 ~L~~~gI~~Vl~l~~~~~~~~~~~~~-~~~i~i~D~~~~~-l~~~~~~~~~fI~~~~~~~~VLVHC~~G~sRS~tvv~AY 99 (249)
.+...+-..||++..........-.. ..++|+.+..... ... ..++.+|+|+|..|. ||.. ++.+
T Consensus 14 ~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~-----------~~~~~~ivv~C~~G~-rS~~-aa~~ 80 (110)
T COG0607 14 LLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLE-----------LPDDDPIVVYCASGV-RSAA-AAAA 80 (110)
T ss_pred HhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccc-----------cCCCCeEEEEeCCCC-ChHH-HHHH
Confidence 34455667889998874211111122 6667776664321 111 346899999999995 8844 4444
Q ss_pred HHHh
Q psy13471 100 LMKR 103 (249)
Q Consensus 100 Lm~~ 103 (249)
|...
T Consensus 81 L~~~ 84 (110)
T COG0607 81 LKLA 84 (110)
T ss_pred HHHc
Confidence 4443
No 53
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=84.80 E-value=1.9 Score=39.39 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=16.4
Q ss_pred hCCCcEEEEecCCCchhHHHH
Q psy13471 76 QSEGAILVHCYHGVSRSATIV 96 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv 96 (249)
.++..|||||..|-+|++-++
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~ 249 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLS 249 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHH
Confidence 688999999999999986544
No 54
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=78.92 E-value=5.6 Score=29.22 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=18.8
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
.++.+|+|+|..|. ||.. + +..++..|.
T Consensus 64 ~~~~~ivv~C~~G~-rs~~-a-~~~L~~~G~ 91 (109)
T cd01533 64 DPRTPIVVNCAGRT-RSII-G-AQSLINAGL 91 (109)
T ss_pred CCCCeEEEECCCCc-hHHH-H-HHHHHHCCC
Confidence 45679999999996 7733 3 334455565
No 55
>PRK01415 hypothetical protein; Validated
Probab=77.52 E-value=3.4 Score=35.76 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=19.9
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCCC
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDLG 107 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s 107 (249)
.++.+|+++|..|+ ||. .++++|. ..|..
T Consensus 169 ~k~k~Iv~yCtgGi-Rs~-kAa~~L~-~~Gf~ 197 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RCE-KSTSLLK-SIGYD 197 (247)
T ss_pred cCCCeEEEECCCCh-HHH-HHHHHHH-HcCCC
Confidence 67889999999995 874 3445554 34543
No 56
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=74.49 E-value=4.9 Score=36.04 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=30.2
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHH
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQR 137 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e~ 137 (249)
.++.+|+|+|..|+ ||.. ++++|.. .|.+ ......-|+...++.+..
T Consensus 169 ~kdk~IvvyC~~G~-Rs~~-aa~~L~~-~Gf~------------~V~~L~GGi~~w~~~~~~ 215 (314)
T PRK00142 169 LKDKKVVMYCTGGI-RCEK-ASAWMKH-EGFK------------EVYQLEGGIITYGEDPET 215 (314)
T ss_pred CCcCeEEEECCCCc-HHHH-HHHHHHH-cCCC------------cEEEecchHHHHHHhhcc
Confidence 46789999999995 8844 4455543 4543 123456677777765543
No 57
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=74.38 E-value=6.5 Score=29.35 Aligned_cols=40 Identities=13% Similarity=-0.003 Sum_probs=25.4
Q ss_pred HHHHHHHHHh--hCCCcEEEEecCCCchhHHHHHHHHHHhCCCC
Q psy13471 66 DSAYEFIRES--QSEGAILVHCYHGVSRSATIVIAYLMKRDDLG 107 (249)
Q Consensus 66 ~~~~~fI~~~--~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s 107 (249)
++..+++... ..+.+|+|+|..| +++++.++.+| +..|++
T Consensus 65 ~~~~~~~~~~~~~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 65 EEFAELLGSLGISNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 4444555443 6788999999998 56666554444 455654
No 58
>smart00400 ZnF_CHCC zinc finger.
Probab=73.35 E-value=4.7 Score=26.14 Aligned_cols=32 Identities=31% Similarity=0.661 Sum_probs=24.6
Q ss_pred EEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHH
Q psy13471 82 LVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRV 115 (249)
Q Consensus 82 LVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~v 115 (249)
..||.+ -++.+- ++.++|+.+++++.+|++.+
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 478874 355554 47888999999999999875
No 59
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=70.88 E-value=6.9 Score=25.49 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhh
Q psy13471 93 ATIVIAYLMKRDDLGVQTAFDRVKSA 118 (249)
Q Consensus 93 ~tvv~AYLm~~~~~s~~~Al~~vr~~ 118 (249)
..-+.+.||..+|++.++|+.+++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 44677889999999999999999875
No 60
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=70.61 E-value=15 Score=27.39 Aligned_cols=76 Identities=12% Similarity=0.203 Sum_probs=37.4
Q ss_pred HHhCCCcEEEEeCcCCC---CCCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHh-hCCCcEEEEecCCCchhHHHHHH
Q psy13471 23 SNEANIKFVFSIGIFPT---LGKISSLTYRHIEVADLPSEDLLSHFDSAYEFIRES-QSEGAILVHCYHGVSRSATIVIA 98 (249)
Q Consensus 23 L~~~gI~~Vl~l~~~~~---~~~~~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~-~~~~~VLVHC~~G~sRS~tvv~A 98 (249)
+.+..=..||++.+... ...+++ -.++|..+........ .....+... ....+|+|+|..| .||...+
T Consensus 10 l~~~~~~~vIDvR~~~e~~~~ghIpg--A~~ip~~~~~~~~~~~---~~~~~l~~~~~~~~~ivv~C~~G-~rs~~aa-- 81 (117)
T cd01522 10 LQADPQAVLVDVRTEAEWKFVGGVPD--AVHVAWQVYPDMEINP---NFLAELEEKVGKDRPVLLLCRSG-NRSIAAA-- 81 (117)
T ss_pred HHhCCCeEEEECCCHHHHhcccCCCC--ceecchhhccccccCH---HHHHHHHhhCCCCCeEEEEcCCC-ccHHHHH--
Confidence 33333466888887642 222222 3444544332211001 112222222 5678899999998 4876543
Q ss_pred HHHHhCCC
Q psy13471 99 YLMKRDDL 106 (249)
Q Consensus 99 YLm~~~~~ 106 (249)
..+...|.
T Consensus 82 ~~L~~~G~ 89 (117)
T cd01522 82 EAAAQAGF 89 (117)
T ss_pred HHHHHCCC
Confidence 33345554
No 61
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=69.36 E-value=1.2 Score=23.08 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=15.9
Q ss_pred EEecCCceeeccCCccccC
Q psy13471 191 YKCKKCRRVLFTLNNIFAH 209 (249)
Q Consensus 191 ~~CkkCr~~L~~~~~i~~H 209 (249)
|.|..|.+...+..++..|
T Consensus 1 y~C~~C~~~f~~~~~l~~H 19 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRH 19 (23)
T ss_dssp EEETTTTEEESSHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHH
Confidence 7899999998887777766
No 62
>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes. The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.
Probab=68.24 E-value=2.5 Score=30.75 Aligned_cols=24 Identities=33% Similarity=0.804 Sum_probs=20.5
Q ss_pred eEEecCCceeeccCCcccc-CCCCC
Q psy13471 190 VYKCKKCRRVLFTLNNIFA-HNRGV 213 (249)
Q Consensus 190 ~~~CkkCr~~L~~~~~i~~-H~~~~ 213 (249)
+|.|++|+..|+.+.+++. |....
T Consensus 2 vf~C~~C~t~l~ds~~lvs~~g~~~ 26 (96)
T PF03226_consen 2 VFQCKNCKTILADSNELVSFHGREG 26 (96)
T ss_pred EEECCCCCCCcCCHHHheecCCCCc
Confidence 6999999999999999999 65433
No 63
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=67.76 E-value=1.8 Score=27.92 Aligned_cols=18 Identities=17% Similarity=0.619 Sum_probs=14.4
Q ss_pred eEEecCCceeeccCCccc
Q psy13471 190 VYKCKKCRRVLFTLNNIF 207 (249)
Q Consensus 190 ~~~CkkCr~~L~~~~~i~ 207 (249)
.+||+.|++.||....+.
T Consensus 4 eiRC~~CnklLa~~g~~~ 21 (51)
T PF10122_consen 4 EIRCGHCNKLLAKAGEVI 21 (51)
T ss_pred ceeccchhHHHhhhcCcc
Confidence 689999999999964443
No 64
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=66.55 E-value=17 Score=25.16 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=18.9
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCCC
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDLG 107 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s 107 (249)
..+..|+|+|..| .|+ ..++..+...|..
T Consensus 54 ~~~~~iv~~c~~g-~~a--~~~~~~l~~~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSG-NRS--AKAAWLLRELGFK 82 (100)
T ss_pred CCCCeEEEEeCCC-cHH--HHHHHHHHHcCCC
Confidence 6788999999665 365 2334555555554
No 65
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=64.94 E-value=13 Score=26.70 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=19.1
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCCC
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDLG 107 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s 107 (249)
.++.+|+|+|..|. ||..++ . .+...|.+
T Consensus 59 ~~~~~ivv~C~~G~-rs~~aa-~-~L~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQFVA-E-LLAERGYD 87 (100)
T ss_pred CCCCeEEEEcCCCC-cHHHHH-H-HHHHcCce
Confidence 56789999999994 774432 3 33455553
No 66
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=64.22 E-value=21 Score=27.08 Aligned_cols=29 Identities=21% Similarity=0.502 Sum_probs=20.8
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
.++.+|+|.|..|-.||+.++ ++++..|.
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~ 112 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLA--WLLESLGI 112 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHH--HHHHHcCC
Confidence 678899999985446776443 66677676
No 67
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=64.21 E-value=13 Score=26.45 Aligned_cols=29 Identities=17% Similarity=0.022 Sum_probs=17.9
Q ss_pred CCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 77 SEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 77 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
+..+|+|.|..|...++..+ +..+...|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~a-a~~L~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRA-ARRLSELGY 77 (92)
T ss_pred CCCeEEEEeCCCCchHHHHH-HHHHHHcCc
Confidence 47799999999853333444 444444454
No 68
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=63.91 E-value=20 Score=25.77 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=18.6
Q ss_pred CCCcEEEEecCCCchhHHHHHHHHHHhCCCC
Q psy13471 77 SEGAILVHCYHGVSRSATIVIAYLMKRDDLG 107 (249)
Q Consensus 77 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s 107 (249)
++.+|+|.|..| .||+.. +..+...|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~--~~~l~~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV--AQWLLRQGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH--HHHHHHcCCc
Confidence 578999999998 587544 3333445654
No 69
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=63.68 E-value=18 Score=29.04 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=22.1
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCCC
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDLG 107 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s 107 (249)
.++.+|+|.|..|..||.. ++.+++..|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 4778999999998777765 45565666654
No 70
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=60.05 E-value=10 Score=27.71 Aligned_cols=37 Identities=16% Similarity=0.366 Sum_probs=25.7
Q ss_pred EEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCC
Q psy13471 82 LVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARD 120 (249)
Q Consensus 82 LVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp 120 (249)
..||.+ -+.++- ++.++|...++++.+|++.+.+.-.
T Consensus 54 ~~~Cf~-Cg~~Gd-~i~~v~~~~~~~f~eAv~~l~~~~~ 90 (97)
T PF01807_consen 54 RFKCFG-CGKGGD-VIDFVMKYEGCSFKEAVKWLAEEFG 90 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHHHT
T ss_pred eEEECC-CCCCCc-HHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 688985 567665 4788899999999999999987643
No 71
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=58.25 E-value=11 Score=32.91 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=21.1
Q ss_pred CCCchhHHHHHHHHHHhCCCCHHHHHHH
Q psy13471 87 HGVSRSATIVIAYLMKRDDLGVQTAFDR 114 (249)
Q Consensus 87 ~G~sRS~tvv~AYLm~~~~~s~~~Al~~ 114 (249)
=|+|||++.+.+-++. |++.++|.++
T Consensus 160 PGiSRSG~Ti~~~l~~--G~~r~~A~~f 185 (259)
T PF02673_consen 160 PGISRSGATITAGLLL--GLDREEAARF 185 (259)
T ss_pred CCcChHHHHHHHHHHC--CCCHHHHHHH
Confidence 4999999988877765 7888888775
No 72
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=56.85 E-value=68 Score=22.76 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=44.0
Q ss_pred hCCCcEEEEeCcCCC--CCCCCCeEEEEEEeccC---CCCchHHHHHHHHHHHHHh-hCCCcEEEEecCCCchhHHHH--
Q psy13471 25 EANIKFVFSIGIFPT--LGKISSLTYRHIEVADL---PSEDLLSHFDSAYEFIRES-QSEGAILVHCYHGVSRSATIV-- 96 (249)
Q Consensus 25 ~~gI~~Vl~l~~~~~--~~~~~~~~~~~i~i~D~---~~~~l~~~~~~~~~fI~~~-~~~~~VLVHC~~G~sRS~tvv-- 96 (249)
+.+=..||++..... ...+.+- .++|.... ........+.......... ..+..|+|+|..|. |+...+
T Consensus 10 ~~~~~~liD~R~~~~~~~~hI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 10 ENESVLLIDVRSPEEYERGHIPGA--VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp TTTTEEEEEESSHHHHHHSBETTE--EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHH
T ss_pred hCCCeEEEEeCCHHHHHcCCCCCC--ccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHH
Confidence 445667888886642 2223333 66666543 2222334444444444444 67778999997775 544433
Q ss_pred -HHHHHHhCCCC
Q psy13471 97 -IAYLMKRDDLG 107 (249)
Q Consensus 97 -~AYLm~~~~~s 107 (249)
+++.+...|.+
T Consensus 87 ~~~~~l~~~g~~ 98 (113)
T PF00581_consen 87 RVAWILKKLGFK 98 (113)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHcCCC
Confidence 34546666654
No 73
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=55.61 E-value=6.2 Score=27.08 Aligned_cols=19 Identities=21% Similarity=0.754 Sum_probs=12.1
Q ss_pred eEEecCCceeeccCCccccC
Q psy13471 190 VYKCKKCRRVLFTLNNIFAH 209 (249)
Q Consensus 190 ~~~CkkCr~~L~~~~~i~~H 209 (249)
+||| +|+|.|...+..-.|
T Consensus 3 ifrC-~Cgr~lya~e~~kTk 21 (68)
T PF09082_consen 3 IFRC-DCGRYLYAKEGAKTK 21 (68)
T ss_dssp EEEE-TTS--EEEETT-SEE
T ss_pred EEEe-cCCCEEEecCCccee
Confidence 6899 799988887766555
No 74
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=55.58 E-value=12 Score=33.03 Aligned_cols=26 Identities=38% Similarity=0.368 Sum_probs=20.3
Q ss_pred CCCchhHHHHHHHHHHhCCCCHHHHHHH
Q psy13471 87 HGVSRSATIVIAYLMKRDDLGVQTAFDR 114 (249)
Q Consensus 87 ~G~sRS~tvv~AYLm~~~~~s~~~Al~~ 114 (249)
=|+|||++.+.+-++. |++-++|.++
T Consensus 166 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLLL--GLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 3999999887777665 7888887664
No 75
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=55.27 E-value=12 Score=32.53 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=20.0
Q ss_pred CCCchhHHHHHHHHHHhCCCCHHHHHHH
Q psy13471 87 HGVSRSATIVIAYLMKRDDLGVQTAFDR 114 (249)
Q Consensus 87 ~G~sRS~tvv~AYLm~~~~~s~~~Al~~ 114 (249)
=|+|||++.+.+-++. |++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLFI--GLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 3999999887777665 6778887664
No 76
>KOG3399|consensus
Probab=54.91 E-value=6.1 Score=30.27 Aligned_cols=26 Identities=15% Similarity=0.456 Sum_probs=21.9
Q ss_pred CceEEecCCceeeccCCccccCCCCC
Q psy13471 188 PNVYKCKKCRRVLFTLNNIFAHNRGV 213 (249)
Q Consensus 188 ~~~~~CkkCr~~L~~~~~i~~H~~~~ 213 (249)
...|+|+.|+..|+...+++.+....
T Consensus 13 ~~~y~C~~C~thla~~~dliSksf~g 38 (122)
T KOG3399|consen 13 HRLYSCAHCKTHLARHDDLISKSFRG 38 (122)
T ss_pred CceEeccCCcccccchhhcccccccc
Confidence 35899999999999999999886443
No 77
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=54.56 E-value=39 Score=24.71 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=18.0
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
..+.+|+|+|..|. ||... +..+...|.
T Consensus 56 ~~~~~vvlyC~~G~-rS~~a--a~~L~~~G~ 83 (101)
T TIGR02981 56 DKNDTVKLYCNAGR-QSGMA--KDILLDMGY 83 (101)
T ss_pred CCCCeEEEEeCCCH-HHHHH--HHHHHHcCC
Confidence 45678999999994 77554 233344454
No 78
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=54.08 E-value=12 Score=32.74 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=18.5
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCCC
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDLG 107 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s 107 (249)
..+.+|+|+|..|+ || +.+ +++++..|..
T Consensus 229 ~~~~~ii~yC~~G~-~A-~~~-~~~l~~~G~~ 257 (281)
T PRK11493 229 SFDRPIIASCGSGV-TA-AVV-VLALATLDVP 257 (281)
T ss_pred CCCCCEEEECCcHH-HH-HHH-HHHHHHcCCC
Confidence 56779999999986 54 333 3333455553
No 79
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=53.27 E-value=14 Score=32.44 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=20.0
Q ss_pred CCCchhHHHHHHHHHHhCCCCHHHHHHH
Q psy13471 87 HGVSRSATIVIAYLMKRDDLGVQTAFDR 114 (249)
Q Consensus 87 ~G~sRS~tvv~AYLm~~~~~s~~~Al~~ 114 (249)
=|+|||++.+.+-++. |++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~~--G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLLL--GLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHHc--CCCHHHHHHH
Confidence 4999999887777665 6788887664
No 80
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=52.45 E-value=12 Score=27.31 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=13.4
Q ss_pred CCCcEEEEecCCCchhHH
Q psy13471 77 SEGAILVHCYHGVSRSAT 94 (249)
Q Consensus 77 ~~~~VLVHC~~G~sRS~t 94 (249)
+..+||+-|.+|+| |..
T Consensus 2 ~~~~ILl~C~~G~s-SS~ 18 (95)
T TIGR00853 2 NETNILLLCAAGMS-TSL 18 (95)
T ss_pred CccEEEEECCCchh-HHH
Confidence 35689999999998 433
No 81
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=51.94 E-value=17 Score=27.56 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=22.5
Q ss_pred CCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhC
Q psy13471 87 HGVSRSATIVIAYLMKRDDLGVQTAFDRVKSAR 119 (249)
Q Consensus 87 ~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~R 119 (249)
.|++|+.|.+++||+.....+-. -+..+...|
T Consensus 23 lgi~R~vA~tlv~L~~~~E~sS~-~IE~~sgLR 54 (124)
T COG4738 23 LGIPRNVATTLVCLAKGDEASSR-EIERVSGLR 54 (124)
T ss_pred cCCCchHHHHHHHHhcCcchhhh-hhHHhhcCC
Confidence 38999999999999998655432 244444444
No 82
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=51.71 E-value=26 Score=31.01 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHh----hCCC----cEEEEecCCCchhHHHH
Q psy13471 63 SHFDSAYEFIRES----QSEG----AILVHCYHGVSRSATIV 96 (249)
Q Consensus 63 ~~~~~~~~fI~~~----~~~~----~VLVHC~~G~sRS~tvv 96 (249)
..+..+.++++.. .++| .|-|=|+.|..||++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~ 263 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIA 263 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHH
Confidence 3445555555544 3333 37788999999999986
No 83
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=50.08 E-value=32 Score=24.65 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=19.9
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCCC
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDLG 107 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s 107 (249)
.++.+|+|+|..|. ||.. ++.++...|..
T Consensus 64 ~~~~~ivv~c~~g~-~s~~--~~~~l~~~G~~ 92 (106)
T cd01519 64 SKDKELIFYCKAGV-RSKA--AAELARSLGYE 92 (106)
T ss_pred CCCCeEEEECCCcH-HHHH--HHHHHHHcCCc
Confidence 45789999999985 6643 34555666653
No 84
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=49.95 E-value=37 Score=25.08 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=13.9
Q ss_pred hCCCcEEEEecCCCchhHHH
Q psy13471 76 QSEGAILVHCYHGVSRSATI 95 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tv 95 (249)
..+.+|+|+|..| .||+..
T Consensus 58 ~~~~~IVlyC~~G-~rS~~a 76 (104)
T PRK10287 58 DKNDTVKLYCNAG-RQSGQA 76 (104)
T ss_pred CCCCeEEEEeCCC-hHHHHH
Confidence 4567899999988 466544
No 85
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=49.76 E-value=23 Score=25.07 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=18.0
Q ss_pred CCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 77 SEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 77 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
++.+|+|+|..|. ||... +.. +...|.
T Consensus 55 ~~~~iv~~c~~G~-rs~~a-a~~-L~~~G~ 81 (95)
T cd01534 55 RGARIVLADDDGV-RADMT-ASW-LAQMGW 81 (95)
T ss_pred CCCeEEEECCCCC-hHHHH-HHH-HHHcCC
Confidence 4678999999985 77543 333 355555
No 86
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=49.57 E-value=4.4 Score=21.81 Aligned_cols=21 Identities=19% Similarity=0.676 Sum_probs=17.4
Q ss_pred eEEecCCceeeccCCccccCC
Q psy13471 190 VYKCKKCRRVLFTLNNIFAHN 210 (249)
Q Consensus 190 ~~~CkkCr~~L~~~~~i~~H~ 210 (249)
.|.|..|++..-+...+..|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~ 21 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHK 21 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHH
T ss_pred CCCCCccCCccCChhHHHHHh
Confidence 389999999988888888774
No 87
>PRK05320 rhodanese superfamily protein; Provisional
Probab=49.26 E-value=32 Score=29.90 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=18.8
Q ss_pred CCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 77 SEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 77 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
++.+|+++|..|+ ||.. ++++|.. .|.
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~~-~Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQE-VGI 200 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHH-cCC
Confidence 6789999999994 8754 4455543 344
No 88
>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....
Probab=48.58 E-value=18 Score=27.92 Aligned_cols=21 Identities=29% Similarity=0.728 Sum_probs=16.5
Q ss_pred CCceEEecCCceeeccCCccc
Q psy13471 187 NPNVYKCKKCRRVLFTLNNIF 207 (249)
Q Consensus 187 ~~~~~~CkkCr~~L~~~~~i~ 207 (249)
....|.|+.|+..||.+..=.
T Consensus 34 ~~G~Y~C~~Cg~pLF~S~~Kf 54 (124)
T PF01641_consen 34 EEGIYVCAVCGTPLFSSDTKF 54 (124)
T ss_dssp SSEEEEETTTS-EEEEGGGEE
T ss_pred CCEEEEcCCCCCccccCcccc
Confidence 467999999999999976544
No 89
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=47.69 E-value=21 Score=26.25 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=29.4
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCCC-HHHHHHHHH
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDLG-VQTAFDRVK 116 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s-~~~Al~~vr 116 (249)
...++|+=||..| +-|+.+|+.+...+ -+||+..-.
T Consensus 22 ~~~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las 58 (99)
T cd04445 22 EKDKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLAS 58 (99)
T ss_pred HHhhccccceecc-----cHHHHHHHHhhcccchHHHHHHHH
Confidence 4678999999988 66889999988885 888887644
No 90
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=47.38 E-value=63 Score=24.89 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=35.5
Q ss_pred EEeccCCC-CchHHHHHHHHHHHHHhhCCCc--EEEEecCCCchhHHHHHHHHHHhCC
Q psy13471 51 IEVADLPS-EDLLSHFDSAYEFIRESQSEGA--ILVHCYHGVSRSATIVIAYLMKRDD 105 (249)
Q Consensus 51 i~i~D~~~-~~l~~~~~~~~~fI~~~~~~~~--VLVHC~~G~sRS~tvv~AYLm~~~~ 105 (249)
++++|..+ +|....+..+.+.|.+...++. .+--|.+|-=++-++.++|.+.-++
T Consensus 59 ~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 59 LKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 45566643 3345556666666666633443 4566777754588899999988877
No 91
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=46.99 E-value=25 Score=31.13 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=15.2
Q ss_pred cEEEEecCCCchhHHHH
Q psy13471 80 AILVHCYHGVSRSATIV 96 (249)
Q Consensus 80 ~VLVHC~~G~sRS~tvv 96 (249)
.|-|=|+.|..||++++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 67788999999999987
No 92
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=46.26 E-value=30 Score=24.49 Aligned_cols=28 Identities=7% Similarity=-0.107 Sum_probs=18.7
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
..+.+|+|+|..| .||+. ++.+| +..|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCC
Confidence 5678999999877 57744 33444 55565
No 93
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=46.21 E-value=4.3 Score=26.42 Aligned_cols=17 Identities=24% Similarity=0.636 Sum_probs=13.8
Q ss_pred eEEecCCceeeccCCcc
Q psy13471 190 VYKCKKCRRVLFTLNNI 206 (249)
Q Consensus 190 ~~~CkkCr~~L~~~~~i 206 (249)
.+||.+|.++|+..+..
T Consensus 4 tiRC~~CnKlLa~a~~~ 20 (60)
T COG4416 4 TIRCAKCNKLLAEAEGQ 20 (60)
T ss_pred eeehHHHhHHHHhcccc
Confidence 58999999999876544
No 94
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=46.10 E-value=63 Score=22.48 Aligned_cols=29 Identities=28% Similarity=0.620 Sum_probs=18.7
Q ss_pred hhCCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 75 SQSEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 75 ~~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
...+.+|+|+|..| .||.. ++..++..|.
T Consensus 53 ~~~~~~ivv~c~~g-~~s~~--a~~~l~~~G~ 81 (96)
T cd01444 53 LDRDRPVVVYCYHG-NSSAQ--LAQALREAGF 81 (96)
T ss_pred cCCCCCEEEEeCCC-ChHHH--HHHHHHHcCC
Confidence 36788999999977 35543 2444455554
No 95
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=46.04 E-value=25 Score=25.01 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=19.0
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
..+.+|+|+|..| .||.. ++..+...|.
T Consensus 59 ~~~~~ivv~c~~g-~~s~~--~~~~l~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASG-WRSAL--AGKTLQDMGL 86 (103)
T ss_pred CCCCeEEEEcCCC-CcHHH--HHHHHHHcCh
Confidence 5678999999988 47643 3455555554
No 96
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=45.28 E-value=5.1 Score=20.35 Aligned_cols=19 Identities=16% Similarity=0.579 Sum_probs=12.7
Q ss_pred EEecCCceeeccCCccccC
Q psy13471 191 YKCKKCRRVLFTLNNIFAH 209 (249)
Q Consensus 191 ~~CkkCr~~L~~~~~i~~H 209 (249)
|.|..|.....+...+..|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H 19 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQH 19 (24)
T ss_dssp EE-SSTS-EESSHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHH
Confidence 6899998888776666655
No 97
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=44.64 E-value=31 Score=25.83 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=19.3
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
..+.+|+|+|..|. ||...+ ..+...|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa--~~L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV--RKLKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH--HHHHHcCC
Confidence 56789999999995 875333 34455565
No 98
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=44.54 E-value=14 Score=27.14 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=9.0
Q ss_pred CcEEEEecCC
Q psy13471 79 GAILVHCYHG 88 (249)
Q Consensus 79 ~~VLVHC~~G 88 (249)
.+|+|||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 6999999987
No 99
>KOG0235|consensus
Probab=44.26 E-value=93 Score=26.36 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=36.2
Q ss_pred CCchHHHHHHHHHHHHHh-----hCCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHH
Q psy13471 58 SEDLLSHFDSAYEFIRES-----QSEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFD 113 (249)
Q Consensus 58 ~~~l~~~~~~~~~fI~~~-----~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~ 113 (249)
.+.+-..+.++..|.++. .+|..|+|+|+...-| +++|+..|++.++...
T Consensus 131 ~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR------~i~~~l~g~s~~~i~~ 185 (214)
T KOG0235|consen 131 GESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLR------AIVKHLEGISDEAIKE 185 (214)
T ss_pred CccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHH------HHHHHHhcCCHhhhhh
Confidence 455667788888888876 6788999999874333 5677888888765443
No 100
>PRK00222 methionine sulfoxide reductase B; Provisional
Probab=43.78 E-value=30 Score=27.35 Aligned_cols=21 Identities=29% Similarity=0.709 Sum_probs=17.5
Q ss_pred CCceEEecCCceeeccCCccc
Q psy13471 187 NPNVYKCKKCRRVLFTLNNIF 207 (249)
Q Consensus 187 ~~~~~~CkkCr~~L~~~~~i~ 207 (249)
....|.|+.|...||.+.+=.
T Consensus 40 ~~G~Y~C~~Cg~pLF~S~~Kf 60 (142)
T PRK00222 40 EKGIYVCIVCGEPLFSSDTKF 60 (142)
T ss_pred CCeEEEecCCCchhcCCcccc
Confidence 467999999999999976544
No 101
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=43.27 E-value=24 Score=29.34 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhh
Q psy13471 96 VIAYLMKRDDLGVQTAFDRVKSA 118 (249)
Q Consensus 96 v~AYLm~~~~~s~~~Al~~vr~~ 118 (249)
+=+.||.++|+|-++||+.+|..
T Consensus 150 AKglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 150 AKGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 45679999999999999999875
No 102
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=42.89 E-value=39 Score=24.15 Aligned_cols=27 Identities=7% Similarity=0.065 Sum_probs=17.9
Q ss_pred CCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 77 SEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 77 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
.+.+|+|+|..|. ||+.++ ..+...|.
T Consensus 64 ~~~~vv~~c~~g~-~s~~~a--~~L~~~G~ 90 (105)
T cd01525 64 KGKIIVIVSHSHK-HAALFA--AFLVKCGV 90 (105)
T ss_pred cCCeEEEEeCCCc-cHHHHH--HHHHHcCC
Confidence 3678999999986 765433 34455555
No 103
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=41.67 E-value=5.9 Score=20.85 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=17.6
Q ss_pred EEecCCceeeccCCccccCCCC
Q psy13471 191 YKCKKCRRVLFTLNNIFAHNRG 212 (249)
Q Consensus 191 ~~CkkCr~~L~~~~~i~~H~~~ 212 (249)
|.|.-|.+...+...+..|..+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 6899999998888877777543
No 104
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=40.93 E-value=1.4e+02 Score=21.67 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=38.8
Q ss_pred HHHHHHHHHHh-hCCCcEEEEecCCCchhHHHHHHHHHHhCCCCHH---------HHHHHHHhhCCc----ccCCHHHHH
Q psy13471 65 FDSAYEFIRES-QSEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQ---------TAFDRVKSARDV----ISPNEGFMH 130 (249)
Q Consensus 65 ~~~~~~fI~~~-~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~---------~Al~~vr~~Rp~----i~pn~gf~~ 130 (249)
++.+.++|+.. +.+.++++.-..+ +||..-.+..| ...|++.. .+..++++..+. +.=.+++.+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns-~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~~~~~~l~~~~~~~~v~vlG~~~l~~ 93 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNS-SRSREEYAKKL-KKLGIPVDEDEIITSGMAAAEYLKEHKGGKKVYVLGSDGLRE 93 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-S-SS-HHHHHHHH-HHTTTT--GGGEEEHHHHHHHHHHHHTTSSEEEEES-HHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCC-CCCHHHHHHHH-HhcCcCCCcCEEEChHHHHHHHHHhcCCCCEEEEEcCHHHHH
Confidence 66778888888 5666666666554 78877777777 66788543 366666664332 233455555
Q ss_pred HHH
Q psy13471 131 QLA 133 (249)
Q Consensus 131 qL~ 133 (249)
.|+
T Consensus 94 ~l~ 96 (101)
T PF13344_consen 94 ELR 96 (101)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 105
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=40.11 E-value=71 Score=27.25 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=39.9
Q ss_pred EEeccCCC-CchHHHHHHHHHHHHHh-hCCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHH
Q psy13471 51 IEVADLPS-EDLLSHFDSAYEFIRES-QSEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQT 110 (249)
Q Consensus 51 i~i~D~~~-~~l~~~~~~~~~fI~~~-~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~ 110 (249)
.+++|..+ ++.....+.+++.|.+. ...+..+.-|-+|-=++.++.++|.+.-+|-.-+.
T Consensus 82 ~~l~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a~sL~gr~~Dr 143 (224)
T PF09623_consen 82 LPLDDIRTEEDNEAFADFIYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYAASLFGRPQDR 143 (224)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHHHHHcCCccce
Confidence 34455533 33445566677777777 45467777788885558999999998888754433
No 106
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=40.09 E-value=7 Score=26.05 Aligned_cols=12 Identities=42% Similarity=1.323 Sum_probs=9.0
Q ss_pred CceEEecCCcee
Q psy13471 188 PNVYKCKKCRRV 199 (249)
Q Consensus 188 ~~~~~CkkCr~~ 199 (249)
..++||.+||+.
T Consensus 36 ~~I~Rc~~CRk~ 47 (61)
T COG2888 36 VEIYRCAKCRKL 47 (61)
T ss_pred eeeehhhhHHHc
Confidence 467888888764
No 107
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=39.69 E-value=71 Score=26.54 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHh-hCCCcEEEEecCCCchhHHHHHHHHH
Q psy13471 62 LSHFDSAYEFIRES-QSEGAILVHCYHGVSRSATIVIAYLM 101 (249)
Q Consensus 62 ~~~~~~~~~fI~~~-~~~~~VLVHC~~G~sRS~tvv~AYLm 101 (249)
.+.+.++.+.|.++ .++++|++. |+|+|++++..+-+
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 45677888888887 788888875 88889886654444
No 108
>TIGR00357 methionine-R-sulfoxide reductase. This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.
Probab=39.65 E-value=37 Score=26.58 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=18.2
Q ss_pred CCceEEecCCceeeccCCccccC
Q psy13471 187 NPNVYKCKKCRRVLFTLNNIFAH 209 (249)
Q Consensus 187 ~~~~~~CkkCr~~L~~~~~i~~H 209 (249)
..-.|.|+.|...||.+.+=...
T Consensus 37 ~~G~Y~C~~Cg~pLF~S~~KfdS 59 (134)
T TIGR00357 37 EEGIYVDITCGEPLFSSEDKFDS 59 (134)
T ss_pred CCeEEEccCCCCccccccchhcC
Confidence 46689999999999997654433
No 109
>PHA02540 61 DNA primase; Provisional
Probab=39.20 E-value=68 Score=29.16 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=29.7
Q ss_pred CCcEEEEec-CCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhC
Q psy13471 78 EGAILVHCY-HGVSRSATIVIAYLMKRDDLGVQTAFDRVKSAR 119 (249)
Q Consensus 78 ~~~VLVHC~-~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~R 119 (249)
.+....||. .|.|.. ++.+||...++++.||++.+-+..
T Consensus 51 k~~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~ 90 (337)
T PHA02540 51 KDGGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKER 90 (337)
T ss_pred CCceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHh
Confidence 346789997 355544 679999999999999999665543
No 110
>KOG1004|consensus
Probab=38.75 E-value=62 Score=27.37 Aligned_cols=41 Identities=20% Similarity=0.100 Sum_probs=34.1
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhh
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSA 118 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~ 118 (249)
.-+|+|.|||.. .+...+++-+||....++-++++.++++.
T Consensus 183 GlNGriWV~ae~--~~~t~~i~~~l~~~e~~td~~q~~~~k~~ 223 (230)
T KOG1004|consen 183 GLNGRIWVKAET--LSDTLIIANILMNCEFMTDTQQRIMVKQL 223 (230)
T ss_pred ecCceEEEeccC--cchHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 458999999976 46677788899999999999998777654
No 111
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=38.31 E-value=65 Score=27.04 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 64 HFDSAYEFIRESQSEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 64 ~~~~~~~fI~~~~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
.|.++++.|-+ ..|+|+| .|+|||+-++=++.|+-...
T Consensus 27 ~~~~a~~~i~~--~~gkv~V---~G~GkSG~Igkk~Aa~L~s~ 64 (202)
T COG0794 27 DFVRAVELILE--CKGKVFV---TGVGKSGLIGKKFAARLAST 64 (202)
T ss_pred HHHHHHHHHHh--cCCcEEE---EcCChhHHHHHHHHHHHHcc
Confidence 45555555444 4788887 59999999998887776544
No 112
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=37.98 E-value=1.5e+02 Score=21.52 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=14.8
Q ss_pred hCCCcEEEEecCCCchhHHHH
Q psy13471 76 QSEGAILVHCYHGVSRSATIV 96 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv 96 (249)
....+|+|+|..|-.||...+
T Consensus 60 ~~~~~iv~yC~~~~~r~~~aa 80 (113)
T cd01531 60 SKKDTVVFHCALSQVRGPSAA 80 (113)
T ss_pred CCCCeEEEEeecCCcchHHHH
Confidence 456799999985546776543
No 113
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=37.04 E-value=84 Score=28.58 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=14.3
Q ss_pred hCCCcEEEEecCCCchhH
Q psy13471 76 QSEGAILVHCYHGVSRSA 93 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~ 93 (249)
..+..||.||.+|..+++
T Consensus 146 ~~g~~ILThc~sg~lat~ 163 (339)
T PRK06036 146 EDGDTVLTHCNAGRLACV 163 (339)
T ss_pred cCCCEEEEecCCcccccc
Confidence 457789999999977653
No 114
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=36.88 E-value=37 Score=29.83 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=16.4
Q ss_pred CCchhHHHHHHHHHHhCCCCHHHHHHH
Q psy13471 88 GVSRSATIVIAYLMKRDDLGVQTAFDR 114 (249)
Q Consensus 88 G~sRS~tvv~AYLm~~~~~s~~~Al~~ 114 (249)
|+|||++.+.+-|.. |++-+.|.++
T Consensus 166 G~SRSGaTI~~~lll--G~~r~~Aaef 190 (270)
T COG1968 166 GTSRSGATISGGLLL--GLSREAAAEF 190 (270)
T ss_pred CCCccHHHHHHHHHc--CCCHHHHHHH
Confidence 899998766555543 5666665543
No 115
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=36.70 E-value=1e+02 Score=22.53 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=14.1
Q ss_pred CCCcEEEEecCCCchhHHH
Q psy13471 77 SEGAILVHCYHGVSRSATI 95 (249)
Q Consensus 77 ~~~~VLVHC~~G~sRS~tv 95 (249)
...+|+|||..|-.||+..
T Consensus 65 ~~~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CCCEEEEECCCCCcccHHH
Confidence 4578999999865677544
No 116
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=36.68 E-value=34 Score=24.16 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=12.1
Q ss_pred CcEEEEecCCCchhH
Q psy13471 79 GAILVHCYHGVSRSA 93 (249)
Q Consensus 79 ~~VLVHC~~G~sRS~ 93 (249)
++|+|.|.+|+|=|.
T Consensus 1 ~kilvvCg~G~gtS~ 15 (87)
T cd05567 1 KKIVFACDAGMGSSA 15 (87)
T ss_pred CEEEEECCCCccHHH
Confidence 479999999987653
No 117
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=36.28 E-value=30 Score=24.22 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=12.2
Q ss_pred cEEEEecCCCchhHH
Q psy13471 80 AILVHCYHGVSRSAT 94 (249)
Q Consensus 80 ~VLVHC~~G~sRS~t 94 (249)
+|||-|.+|+|=|..
T Consensus 1 kIlvvC~~Gi~TS~~ 15 (90)
T PF02302_consen 1 KILVVCGSGIGTSLM 15 (90)
T ss_dssp EEEEEESSSSHHHHH
T ss_pred CEEEECCChHHHHHH
Confidence 589999999976644
No 118
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=35.05 E-value=54 Score=23.19 Aligned_cols=18 Identities=33% Similarity=0.709 Sum_probs=13.7
Q ss_pred hCCCcEEEEecCCCchhHH
Q psy13471 76 QSEGAILVHCYHGVSRSAT 94 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~t 94 (249)
..+.+|+|+|..|. ||..
T Consensus 52 ~~~~~iv~~c~~g~-~s~~ 69 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQQ 69 (99)
T ss_pred CCCCcEEEEeCCCc-hHHH
Confidence 56789999999984 5543
No 119
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=35.04 E-value=1.5e+02 Score=26.53 Aligned_cols=77 Identities=12% Similarity=0.153 Sum_probs=40.3
Q ss_pred ccCCEEEcCccccCCHhH-HHhCCCcEEEEeCcCCCCCCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHh---hCCCc
Q psy13471 5 VEENLYLGDLNDAMGLKS-SNEANIKFVFSIGIFPTLGKISSLTYRHIEVADLPSEDLLSHFDSAYEFIRES---QSEGA 80 (249)
Q Consensus 5 I~~~LylG~~~~a~~~~~-L~~~gI~~Vl~l~~~~~~~~~~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~---~~~~~ 80 (249)
|.|.-.+|..-.+.+... |.+.+ +.||+..+.-+ +..=...+--+++ ...|.+.-++|++. .++++
T Consensus 105 v~p~~~vG~yl~p~~wn~~l~D~~-~vviDtRN~YE--------~~iG~F~gAv~p~-~~tFrefP~~v~~~~~~~~~Kk 174 (308)
T COG1054 105 VDPLENVGTYLSPKDWNELLSDPD-VVVIDTRNDYE--------VAIGHFEGAVEPD-IETFREFPAWVEENLDLLKDKK 174 (308)
T ss_pred cCccccccCccCHHHHHHHhcCCC-eEEEEcCccee--------EeeeeecCccCCC-hhhhhhhHHHHHHHHHhccCCc
Confidence 445444555555544433 33334 55555555421 1110111222233 34566666666655 56779
Q ss_pred EEEEecCCCchh
Q psy13471 81 ILVHCYHGVSRS 92 (249)
Q Consensus 81 VLVHC~~G~sRS 92 (249)
|..-|+.|+ |.
T Consensus 175 VvmyCTGGI-RC 185 (308)
T COG1054 175 VVMYCTGGI-RC 185 (308)
T ss_pred EEEEcCCce-ee
Confidence 999999998 64
No 120
>TIGR03586 PseI pseudaminic acid synthase.
Probab=34.79 E-value=40 Score=30.45 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEecCCC
Q psy13471 62 LSHFDSAYEFIRESQSEGAILVHCYHGV 89 (249)
Q Consensus 62 ~~~~~~~~~fI~~~~~~~~VLVHC~~G~ 89 (249)
++.+..++++|.+.....-+|.||..+.
T Consensus 146 ~~Ei~~Av~~i~~~g~~~i~LlhC~s~Y 173 (327)
T TIGR03586 146 LEEIQEAVEACREAGCKDLVLLKCTSSY 173 (327)
T ss_pred HHHHHHHHHHHHHCCCCcEEEEecCCCC
Confidence 5678888888876544457999998774
No 121
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=34.72 E-value=1.8e+02 Score=24.46 Aligned_cols=69 Identities=12% Similarity=0.004 Sum_probs=47.4
Q ss_pred HHHHHHHHHHh-hCCCcEEEEecCCCchhHHHHHHHHHHhCCC---------CHHHHHHHHHhhCC----cccCCHHHHH
Q psy13471 65 FDSAYEFIRES-QSEGAILVHCYHGVSRSATIVIAYLMKRDDL---------GVQTAFDRVKSARD----VISPNEGFMH 130 (249)
Q Consensus 65 ~~~~~~fI~~~-~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~---------s~~~Al~~vr~~Rp----~i~pn~gf~~ 130 (249)
++.+.++|... ..+.++.+....+ +||..-++.+|....|+ +..-+..+++++.+ .+.-..++.+
T Consensus 16 ~~~a~e~i~~l~~~g~~~~~~tN~~-~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~~~~~v~v~G~~~~~~ 94 (236)
T TIGR01460 16 IPGAAEALNRLRAKGKPVVFLTNNS-SRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRFEGEKVYVIGVGELRE 94 (236)
T ss_pred CcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhCCCCEEEEECCHHHHH
Confidence 66788888888 6677777776655 78888888999886665 23446777776543 2444567766
Q ss_pred HHHH
Q psy13471 131 QLAL 134 (249)
Q Consensus 131 qL~~ 134 (249)
.|+.
T Consensus 95 ~l~~ 98 (236)
T TIGR01460 95 SLEG 98 (236)
T ss_pred HHHH
Confidence 6654
No 122
>KOG1530|consensus
Probab=34.64 E-value=87 Score=24.49 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=33.1
Q ss_pred HHhCCCcEEEEeCcCCCCCCCCCeEEEEEEeccCCCCchHHHHHHHHHHHHHh-----hCCCcEEEEecCCCchhHH
Q psy13471 23 SNEANIKFVFSIGIFPTLGKISSLTYRHIEVADLPSEDLLSHFDSAYEFIRES-----QSEGAILVHCYHGVSRSAT 94 (249)
Q Consensus 23 L~~~gI~~Vl~l~~~~~~~~~~~~~~~~i~i~D~~~~~l~~~~~~~~~fI~~~-----~~~~~VLVHC~~G~sRS~t 94 (249)
|-..+=...|++...++...-.--.-..||..-.+.+.-+. =-+|.+.. .....|.|+|..|+ ||..
T Consensus 33 L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~----~~eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~~ 104 (136)
T KOG1530|consen 33 LLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALK----NPEFLKQVGSSKPPHDKEIIFGCASGV-RSLK 104 (136)
T ss_pred HhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccC----CHHHHHHhcccCCCCCCcEEEEeccCc-chhH
Confidence 33444466777776642111111244555554333222111 01233332 44568999999996 8744
No 123
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=34.50 E-value=2e+02 Score=28.65 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHh-------hCCCcEEEEecCCCchhHHH--HHHHHHHhCCCCHHHHHHHHHhhCC--cccCCHHHHHH
Q psy13471 63 SHFDSAYEFIRES-------QSEGAILVHCYHGVSRSATI--VIAYLMKRDDLGVQTAFDRVKSARD--VISPNEGFMHQ 131 (249)
Q Consensus 63 ~~~~~~~~fI~~~-------~~~~~VLVHC~~G~sRS~tv--v~AYLm~~~~~s~~~Al~~vr~~Rp--~i~pn~gf~~q 131 (249)
.++..+++-|+.- .+++.+.|-=.+|-|.++.. -+|||.+.++=.+ +.+| .+.||.-|+..
T Consensus 204 ~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l--------~~k~vlvl~PN~vFleY 275 (747)
T COG3973 204 AKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL--------QAKPVLVLGPNRVFLEY 275 (747)
T ss_pred hhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc--------ccCceEEEcCcHHHHHH
Confidence 3567777777765 56788889999999997443 3899999876554 2333 58899999888
Q ss_pred HHH
Q psy13471 132 LAL 134 (249)
Q Consensus 132 L~~ 134 (249)
...
T Consensus 276 is~ 278 (747)
T COG3973 276 ISR 278 (747)
T ss_pred HHH
Confidence 764
No 124
>smart00355 ZnF_C2H2 zinc finger.
Probab=34.30 E-value=5.5 Score=20.45 Aligned_cols=20 Identities=25% Similarity=0.687 Sum_probs=14.7
Q ss_pred EEecCCceeeccCCccccCC
Q psy13471 191 YKCKKCRRVLFTLNNIFAHN 210 (249)
Q Consensus 191 ~~CkkCr~~L~~~~~i~~H~ 210 (249)
|.|..|+........+..|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~ 20 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHM 20 (26)
T ss_pred CCCCCCcchhCCHHHHHHHH
Confidence 56888988877776666664
No 125
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=34.26 E-value=12 Score=24.89 Aligned_cols=11 Identities=45% Similarity=1.334 Sum_probs=9.3
Q ss_pred ceEEecCCcee
Q psy13471 189 NVYKCKKCRRV 199 (249)
Q Consensus 189 ~~~~CkkCr~~ 199 (249)
.++||.+||+.
T Consensus 35 ~I~RC~~CRk~ 45 (59)
T PRK14890 35 IIYRCEKCRKQ 45 (59)
T ss_pred eEeechhHHhc
Confidence 48999999875
No 126
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=34.18 E-value=45 Score=25.11 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=16.9
Q ss_pred hCCCcEEEEec-CCCchhHHHHHHHHHH
Q psy13471 76 QSEGAILVHCY-HGVSRSATIVIAYLMK 102 (249)
Q Consensus 76 ~~~~~VLVHC~-~G~sRS~tvv~AYLm~ 102 (249)
.+..+|+|||. +| .||+. ++.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~-aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPR-MARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHHH-HHHHHHH
Confidence 56889999997 66 57755 3344443
No 127
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=34.12 E-value=31 Score=28.05 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=26.0
Q ss_pred CCcccCCEEEcCccccCCHhH--HHhCCCcEEE
Q psy13471 2 PNLVEENLYLGDLNDAMGLKS--SNEANIKFVF 32 (249)
Q Consensus 2 P~~I~~~LylG~~~~a~~~~~--L~~~gI~~Vl 32 (249)
|+...|++|+-++.+. +.+. |++.||+.||
T Consensus 14 p~l~~P~l~V~si~~I-~~~~~~Lk~~Gik~li 45 (168)
T PF09419_consen 14 PSLLLPHLYVPSIRDI-DFEANHLKKKGIKALI 45 (168)
T ss_pred ccccCCCEEcCChhhC-CcchhhhhhcCceEEE
Confidence 6788999999988886 6777 9999999987
No 128
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=34.11 E-value=34 Score=25.44 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=11.1
Q ss_pred CcEEEEecCCCchh
Q psy13471 79 GAILVHCYHGVSRS 92 (249)
Q Consensus 79 ~~VLVHC~~G~sRS 92 (249)
.+||+-|.+|+|=|
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 36999999999444
No 129
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=34.10 E-value=1.1e+02 Score=22.09 Aligned_cols=33 Identities=27% Similarity=0.611 Sum_probs=20.4
Q ss_pred HHHHhhCCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 71 FIRESQSEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 71 fI~~~~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
++.....+.+|+|+|..|. ||... +..++..|.
T Consensus 51 ~~~~~~~~~~ivv~c~~g~-~s~~a--~~~L~~~G~ 83 (108)
T PRK00162 51 FMRQADFDTPVMVMCYHGN-SSQGA--AQYLLQQGF 83 (108)
T ss_pred HHHhcCCCCCEEEEeCCCC-CHHHH--HHHHHHCCc
Confidence 4443456789999999985 65432 234455554
No 130
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=33.73 E-value=1.5e+02 Score=27.62 Aligned_cols=37 Identities=19% Similarity=0.516 Sum_probs=28.6
Q ss_pred EEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCC
Q psy13471 82 LVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARD 120 (249)
Q Consensus 82 LVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp 120 (249)
..||. |-+..+- ++.++|+..++++.+|++.+.+.-.
T Consensus 55 ~~~Cf-~Cg~~Gd-~i~fv~~~~~~sf~eA~~~La~~~g 91 (415)
T TIGR01391 55 FYHCF-GCGAGGD-AIKFLMEIEGISFVEAVEELAKRAG 91 (415)
T ss_pred cEEEC-CCCCCCC-HHHHHHHHhCCCHHHHHHHHHHHcC
Confidence 47887 3344554 4789999999999999999987643
No 131
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=33.36 E-value=1.1e+02 Score=27.77 Aligned_cols=9 Identities=44% Similarity=1.069 Sum_probs=8.4
Q ss_pred cEEEEecCC
Q psy13471 80 AILVHCYHG 88 (249)
Q Consensus 80 ~VLVHC~~G 88 (249)
.||.||.+|
T Consensus 149 ~ILThcnsg 157 (331)
T TIGR00512 149 RVLTHCNTG 157 (331)
T ss_pred eEEeecCCc
Confidence 799999998
No 132
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=33.18 E-value=73 Score=31.38 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=22.1
Q ss_pred HHHHHHh--hCCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 69 YEFIRES--QSEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 69 ~~fI~~~--~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
-+++.+. ..+.+|.|+|..|. ||+.+ +++++..|.
T Consensus 212 ~~~~~~~Gi~~~~~VVvYC~sG~-rAa~~--~~~L~~lG~ 248 (610)
T PRK09629 212 PEILRDLGITPDKEVITHCQTHH-RSGFT--YLVAKALGY 248 (610)
T ss_pred HHHHHHcCCCCCCCEEEECCCCh-HHHHH--HHHHHHcCC
Confidence 3444444 67889999999996 65433 344455554
No 133
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=32.80 E-value=58 Score=26.14 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=48.9
Q ss_pred HHHHHHHh---hCCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHHHHHHHhcCCCC
Q psy13471 68 AYEFIRES---QSEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQLALYQRMRMTLD 143 (249)
Q Consensus 68 ~~~fI~~~---~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL~~~e~~~~~~~ 143 (249)
+.++|.+. ....+|+|-|-.|.+=.-++++|-.+...|+...= --..+.-..+..+..+++.+++++.++.
T Consensus 12 ~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 85 (169)
T PF03853_consen 12 IAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV-----YLVGPPEKLSEDAKQQLEILKKMGIKII 85 (169)
T ss_dssp HHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE-----EEEESSSSTSHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE-----EEEeccccCCHHHHHHHHHHHhcCCcEe
Confidence 44455554 47899999998887777778888888887887421 1122344778899999999999987654
No 134
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=32.16 E-value=47 Score=26.34 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=18.8
Q ss_pred HHHHHHHHh-hCCCcEEEEecC
Q psy13471 67 SAYEFIRES-QSEGAILVHCYH 87 (249)
Q Consensus 67 ~~~~fI~~~-~~~~~VLVHC~~ 87 (249)
-++.+++++ ..|.+|||+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 788999999 999999999943
No 135
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=31.68 E-value=23 Score=21.05 Aligned_cols=10 Identities=50% Similarity=1.315 Sum_probs=8.4
Q ss_pred CceEEecCCc
Q psy13471 188 PNVYKCKKCR 197 (249)
Q Consensus 188 ~~~~~CkkCr 197 (249)
--.|||+.|+
T Consensus 27 ~qryrC~~C~ 36 (36)
T PF03811_consen 27 HQRYRCKDCR 36 (36)
T ss_pred CEeEecCcCC
Confidence 4689999996
No 136
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=31.18 E-value=47 Score=30.01 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEecCCCchh
Q psy13471 62 LSHFDSAYEFIRESQSEGAILVHCYHGVSRS 92 (249)
Q Consensus 62 ~~~~~~~~~fI~~~~~~~~VLVHC~~G~sRS 92 (249)
+..+.++++++++.....-+|.||..+.--.
T Consensus 159 ~~ei~~av~~~r~~g~~~i~LLhC~s~YPap 189 (347)
T COG2089 159 IEEIEEAVAILRENGNPDIALLHCTSAYPAP 189 (347)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Confidence 5668888888888744467999999886443
No 137
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=31.15 E-value=59 Score=29.80 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=16.8
Q ss_pred CcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 79 GAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 79 ~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
.+|+|||..| .||... +..| +..|.
T Consensus 333 ~~Ivv~C~sG-~RS~~A-a~~L-~~~G~ 357 (370)
T PRK05600 333 DNVVVYCASG-IRSADF-IEKY-SHLGH 357 (370)
T ss_pred CcEEEECCCC-hhHHHH-HHHH-HHcCC
Confidence 3899999999 488653 3444 34454
No 138
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=31.01 E-value=26 Score=27.96 Aligned_cols=13 Identities=46% Similarity=1.032 Sum_probs=10.5
Q ss_pred ceEEecCCceeec
Q psy13471 189 NVYKCKKCRRVLF 201 (249)
Q Consensus 189 ~~~~CkkCr~~L~ 201 (249)
..|||++|+-.|-
T Consensus 139 ~~YrC~~C~gkL~ 151 (156)
T COG3091 139 EVYRCGKCGGKLV 151 (156)
T ss_pred ceEEeccCCceEE
Confidence 3799999987763
No 139
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=30.96 E-value=2.8e+02 Score=24.97 Aligned_cols=65 Identities=15% Similarity=0.288 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHh---hCCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCHHHHHHH
Q psy13471 63 SHFDSAYEFIRES---QSEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISPNEGFMHQL 132 (249)
Q Consensus 63 ~~~~~~~~fI~~~---~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~gf~~qL 132 (249)
+..++++.|+.+. --..++=.-|..+ .-..-+|-++. .-.++.|+-.++.++--+.+|+.+..-+
T Consensus 91 ~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~---~Ll~RLa~~~t--~~el~~~~l~l~D~kdk~~sn~kl~~k~ 158 (317)
T PF11822_consen 91 SLVEECLQYCHDHMSEIVASPCNLNCLND---NLLTRLADMFT--HEELEAAFLRLKDKKDKIKSNRKLFCKK 158 (317)
T ss_pred HHHHHHHHHHHHhHHHHHcCCCCcccCCH---HHHHHHHHhcC--cccHhHhhhhhcCchhccccHHHHHHHH
Confidence 4577888888665 1122333334332 22222333333 4577788888888888888886554433
No 140
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=30.83 E-value=15 Score=19.90 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=18.2
Q ss_pred EEecCCceeeccCCccccCCCC
Q psy13471 191 YKCKKCRRVLFTLNNIFAHNRG 212 (249)
Q Consensus 191 ~~CkkCr~~L~~~~~i~~H~~~ 212 (249)
|.|.-|.+.+.+...+..|..+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 6899999988888888888654
No 141
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=30.10 E-value=57 Score=24.19 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=18.9
Q ss_pred CCcEEEEecCCCchhHHH-HHHHHHHhCCCC
Q psy13471 78 EGAILVHCYHGVSRSATI-VIAYLMKRDDLG 107 (249)
Q Consensus 78 ~~~VLVHC~~G~sRS~tv-v~AYLm~~~~~s 107 (249)
..+||+-|.+|+|=|-.+ -+--.....|++
T Consensus 3 ~kkIllvC~~G~sTSll~~km~~~~~~~gi~ 33 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMRAQAEKYEVP 33 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHHHCCCC
Confidence 357999999999877544 222222455553
No 142
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=29.70 E-value=1.3e+02 Score=21.77 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=22.9
Q ss_pred HHHHHHHHh--hCCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 67 SAYEFIRES--QSEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 67 ~~~~fI~~~--~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
...+++... ..+.+|+|+|..|. ||+.+ ++.+...|.
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~g~-~s~~~--~~~l~~~G~ 103 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGSGV-TACVL--LLALELLGY 103 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHH-HHHHH--HHHHHHcCC
Confidence 333444444 56889999999884 66543 444455555
No 143
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=29.32 E-value=85 Score=22.81 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=18.4
Q ss_pred hCCCcEEEEecCCCc-hhHHHHHHHHHHhCCC
Q psy13471 76 QSEGAILVHCYHGVS-RSATIVIAYLMKRDDL 106 (249)
Q Consensus 76 ~~~~~VLVHC~~G~s-RS~tvv~AYLm~~~~~ 106 (249)
..+.+|+|.|..|.. ||+. + +..++..|.
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~-~-a~~l~~~G~ 91 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATK-A-ALKLAELGF 91 (110)
T ss_pred CCCCeEEEEECCCCCchHHH-H-HHHHHHcCC
Confidence 578899999998853 4433 2 234445454
No 144
>PF10955 DUF2757: Protein of unknown function (DUF2757); InterPro: IPR020115 This entry contains proteins with no known function.
Probab=28.91 E-value=35 Score=24.00 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=12.3
Q ss_pred ceEEecCCceeecc
Q psy13471 189 NVYKCKKCRRVLFT 202 (249)
Q Consensus 189 ~~~~CkkCr~~L~~ 202 (249)
..|.||.|+..+.+
T Consensus 3 i~Y~CRHCg~~IG~ 16 (76)
T PF10955_consen 3 IHYYCRHCGTKIGT 16 (76)
T ss_pred eEEEecCCCCEEEE
Confidence 57999999999876
No 145
>PRK05508 methionine sulfoxide reductase B; Provisional
Probab=28.27 E-value=39 Score=25.87 Aligned_cols=23 Identities=26% Similarity=0.657 Sum_probs=18.3
Q ss_pred CCceEEecCCceeeccCCccccC
Q psy13471 187 NPNVYKCKKCRRVLFTLNNIFAH 209 (249)
Q Consensus 187 ~~~~~~CkkCr~~L~~~~~i~~H 209 (249)
..-.|.|+.|...||.+..=...
T Consensus 30 ~~G~Y~C~~Cg~pLF~S~~KfdS 52 (119)
T PRK05508 30 EKGTYVCKQCGAPLYRSEDKFKS 52 (119)
T ss_pred CCeEEEecCCCCccccccccccC
Confidence 46799999999999997654433
No 146
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=26.98 E-value=1.3e+02 Score=27.66 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=11.0
Q ss_pred hCCCcEEEEecCCC
Q psy13471 76 QSEGAILVHCYHGV 89 (249)
Q Consensus 76 ~~~~~VLVHC~~G~ 89 (249)
..|..||.||.+|.
T Consensus 165 ~dg~~ILThcnsg~ 178 (363)
T PRK05772 165 NDGDTVLTQCNAGG 178 (363)
T ss_pred CCCCEEEEecCCcc
Confidence 35678999999873
No 147
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=26.73 E-value=9.9 Score=25.04 Aligned_cols=27 Identities=15% Similarity=0.391 Sum_probs=22.5
Q ss_pred CCceEEecCCceeeccCCccccCCCCC
Q psy13471 187 NPNVYKCKKCRRVLFTLNNIFAHNRGV 213 (249)
Q Consensus 187 ~~~~~~CkkCr~~L~~~~~i~~H~~~~ 213 (249)
....+||..|..+.-.+.+...|...+
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVNKa 40 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVNKA 40 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhhHH
Confidence 467899999998877788888887766
No 148
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=26.53 E-value=38 Score=20.96 Aligned_cols=12 Identities=42% Similarity=1.157 Sum_probs=9.9
Q ss_pred CCceEEecCCce
Q psy13471 187 NPNVYKCKKCRR 198 (249)
Q Consensus 187 ~~~~~~CkkCr~ 198 (249)
....|+|+.||+
T Consensus 34 ~~~~~~C~~C~~ 45 (46)
T PF12760_consen 34 TRGRYRCKACRK 45 (46)
T ss_pred CCCeEECCCCCC
Confidence 357899999986
No 149
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=26.25 E-value=89 Score=28.42 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=19.7
Q ss_pred CCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 77 SEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 77 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
++.+|+|+|..|-.||+.+ +.++...|.
T Consensus 87 ~~~~ivvyC~rgG~RS~~a--a~~L~~~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSV--QQWLKEAGI 114 (345)
T ss_pred CCCeEEEEECCCChHHHHH--HHHHHHcCC
Confidence 6789999997665788775 344445565
No 150
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=25.86 E-value=96 Score=26.72 Aligned_cols=28 Identities=32% Similarity=0.621 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEecCCC
Q psy13471 62 LSHFDSAYEFIRESQSEGAILVHCYHGV 89 (249)
Q Consensus 62 ~~~~~~~~~fI~~~~~~~~VLVHC~~G~ 89 (249)
++.++.+++++.+.....-+|.||.++.
T Consensus 125 l~EI~~Av~~~~~~~~~~l~llHC~s~Y 152 (241)
T PF03102_consen 125 LEEIERAVEVLREAGNEDLVLLHCVSSY 152 (241)
T ss_dssp HHHHHHHHHHHHHHCT--EEEEEE-SSS
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence 5678899999977778889999999874
No 151
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=25.70 E-value=54 Score=29.03 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=18.1
Q ss_pred hCCCcEEEEecCCCchhHH-HHHHHHHH
Q psy13471 76 QSEGAILVHCYHGVSRSAT-IVIAYLMK 102 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~t-vv~AYLm~ 102 (249)
...+.|.|.|..|+.=|.+ ++++++..
T Consensus 232 ~~~~~vI~yCgsG~~As~~~~al~~lg~ 259 (285)
T COG2897 232 DPDKEVIVYCGSGVRASVTWLALAELGG 259 (285)
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHhCC
Confidence 7889999999998744443 33444443
No 152
>KOG4542|consensus
Probab=25.68 E-value=22 Score=25.54 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=19.1
Q ss_pred ccCCEEEcCccccCCHhHHHhCCC
Q psy13471 5 VEENLYLGDLNDAMGLKSSNEANI 28 (249)
Q Consensus 5 I~~~LylG~~~~a~~~~~L~~~gI 28 (249)
+.++||+|+.-+.+-..+|.++.|
T Consensus 63 vip~LyvG~lIskn~A~~LEENdi 86 (96)
T KOG4542|consen 63 VIPFLYVGTLISKNFAALLEENDI 86 (96)
T ss_pred ecchhhhhhhhhhhHHHhhhhccc
Confidence 578999999888777777777665
No 153
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=25.65 E-value=41 Score=19.79 Aligned_cols=12 Identities=25% Similarity=0.930 Sum_probs=10.0
Q ss_pred ceEEecCCceee
Q psy13471 189 NVYKCKKCRRVL 200 (249)
Q Consensus 189 ~~~~CkkCr~~L 200 (249)
..|+|++|+...
T Consensus 4 Y~y~C~~Cg~~f 15 (41)
T smart00834 4 YEYRCEDCGHTF 15 (41)
T ss_pred EEEEcCCCCCEE
Confidence 579999999854
No 154
>PRK01112 phosphoglyceromutase; Provisional
Probab=25.56 E-value=1.8e+02 Score=24.55 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=33.8
Q ss_pred CCchHHHHHHHHHHHHHh-----hCCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHH
Q psy13471 58 SEDLLSHFDSAYEFIRES-----QSEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFD 113 (249)
Q Consensus 58 ~~~l~~~~~~~~~fI~~~-----~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~ 113 (249)
.+++.+...++..++++. ..++.|||-|++|+-|+.. ++ ..+++.+++..
T Consensus 148 GES~~d~~~Rv~~~l~~~~~~~~~~~~~ilVVsHg~vir~l~---~~---ll~~~~~~~~~ 202 (228)
T PRK01112 148 GESLEDTGQRTLPYFQNRILPHLQQGKNVFVSAHGNSLRSLI---MD---LEKLSEEEVLS 202 (228)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHH---HH---HhCCCHHHHhh
Confidence 456667777777777754 2568899999999877633 22 23677776654
No 155
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=25.44 E-value=1.2e+02 Score=24.68 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=26.1
Q ss_pred CCchHHHHHHHHHHHHHh-h--CCCcEEEEecCCCch
Q psy13471 58 SEDLLSHFDSAYEFIRES-Q--SEGAILVHCYHGVSR 91 (249)
Q Consensus 58 ~~~l~~~~~~~~~fI~~~-~--~~~~VLVHC~~G~sR 91 (249)
.++..+...++..+|++. . .++.|||-|+.|+-|
T Consensus 122 gEs~~~~~~R~~~~~~~~~~~~~~~~vlvVsHg~~ir 158 (208)
T COG0406 122 GESLADVSKRVVAALAELLRSPPGNNVLVVSHGGVIR 158 (208)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEChHHHH
Confidence 466777788888888888 2 223699999999888
No 156
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=25.17 E-value=2.9e+02 Score=20.57 Aligned_cols=34 Identities=9% Similarity=0.283 Sum_probs=24.8
Q ss_pred hHHHhCCCcEEEEeCcCCCCC--CC-----------CCeEEEEEEec
Q psy13471 21 KSSNEANIKFVFSIGIFPTLG--KI-----------SSLTYRHIEVA 54 (249)
Q Consensus 21 ~~L~~~gI~~Vl~l~~~~~~~--~~-----------~~~~~~~i~i~ 54 (249)
+.|++.||+.||++...+... .+ .|+.|.+++-.
T Consensus 7 ~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~L 53 (122)
T PF04343_consen 7 DLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPEL 53 (122)
T ss_pred HHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhh
Confidence 578999999999998776311 11 67888887764
No 157
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=24.90 E-value=17 Score=18.91 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=9.5
Q ss_pred EEecCCceeeccCCccccC
Q psy13471 191 YKCKKCRRVLFTLNNIFAH 209 (249)
Q Consensus 191 ~~CkkCr~~L~~~~~i~~H 209 (249)
|+|..|...-- ..++..|
T Consensus 1 y~C~~C~y~t~-~~~l~~H 18 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRH 18 (24)
T ss_dssp EE-SSSS-EES-HHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHH
Confidence 78999976543 4444444
No 158
>PHA02768 hypothetical protein; Provisional
Probab=24.55 E-value=15 Score=24.11 Aligned_cols=21 Identities=19% Similarity=0.575 Sum_probs=18.0
Q ss_pred eEEecCCceeeccCCccccCC
Q psy13471 190 VYKCKKCRRVLFTLNNIFAHN 210 (249)
Q Consensus 190 ~~~CkkCr~~L~~~~~i~~H~ 210 (249)
-|.|..|++.....+++..|-
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~ 25 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHL 25 (55)
T ss_pred ccCcchhCCeeccHHHHHHHH
Confidence 489999999999988888774
No 159
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=24.51 E-value=56 Score=19.22 Aligned_cols=14 Identities=29% Similarity=0.731 Sum_probs=11.4
Q ss_pred CCceEEecCCceee
Q psy13471 187 NPNVYKCKKCRRVL 200 (249)
Q Consensus 187 ~~~~~~CkkCr~~L 200 (249)
.+...+|.+|+.+.
T Consensus 22 ~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 22 KGRKVRCSKCGHVF 35 (36)
T ss_pred CCcEEECCCCCCEe
Confidence 56799999998754
No 160
>COG0358 DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair]
Probab=24.51 E-value=1.7e+02 Score=28.37 Aligned_cols=42 Identities=21% Similarity=0.367 Sum_probs=33.6
Q ss_pred CCCcEEEEec-CCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCc
Q psy13471 77 SEGAILVHCY-HGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDV 121 (249)
Q Consensus 77 ~~~~VLVHC~-~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~ 121 (249)
...+++.||. .|.+.. ++.++|...|+|+.+|...+-.+-..
T Consensus 50 ~~~k~~yhCFGCg~~Gd---~i~Fl~~~~g~sf~eav~~La~~~gi 92 (568)
T COG0358 50 SPEKGFYHCFGCGAGGD---AIKFLMELLGLSFDEAVLQLAGRAGI 92 (568)
T ss_pred eCCCCeEecCCCCCCcc---HHHHHHHhcCCCHHHHHHHHHHHhCC
Confidence 4678899997 344444 67999999999999999999888653
No 161
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=24.31 E-value=46 Score=20.25 Aligned_cols=12 Identities=25% Similarity=0.897 Sum_probs=9.8
Q ss_pred ceEEecCCceee
Q psy13471 189 NVYKCKKCRRVL 200 (249)
Q Consensus 189 ~~~~CkkCr~~L 200 (249)
..|+|.+|+...
T Consensus 4 Yey~C~~Cg~~f 15 (42)
T PF09723_consen 4 YEYRCEECGHEF 15 (42)
T ss_pred EEEEeCCCCCEE
Confidence 589999998654
No 162
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=24.22 E-value=96 Score=30.49 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=30.2
Q ss_pred CCcEEEEecCCCchhHHHHHHHHHH---hCCCCHHHHHHHHHhh
Q psy13471 78 EGAILVHCYHGVSRSATIVIAYLMK---RDDLGVQTAFDRVKSA 118 (249)
Q Consensus 78 ~~~VLVHC~~G~sRS~tvv~AYLm~---~~~~s~~~Al~~vr~~ 118 (249)
-.+..|||..|- +++++++||+ ..++++++|+..++.+
T Consensus 160 ~~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~~ 200 (601)
T TIGR02094 160 IDPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRKS 200 (601)
T ss_pred CCceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCCe
Confidence 588999999985 5788888865 4578999999877654
No 163
>PF08050 Tet_res_leader: Tetracycline resistance leader peptide; InterPro: IPR012618 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the tetracycline resistance leader peptide, which can be found in Tet(L) efflux proteins. Tet(L) is a transmembrane protein that can function as a metal-tetracycline/H+ antiporter. Its sequence is preceded by a leader region region that contains a 20-amino-acid open reading frame and an appropriately spaced ribosome binding site []. Expression of the gene is induced by addition of tetracycline, which is thought to act by binding to ribosomes that translate the tet(L) leader peptide coding sequence. The presence of three inverted repeats, which can form two different conformations of mRNA, suggests that the tetracycline resistance (TcR) region is regulated by a translational attenuation mechanism. A Rho-independent transcriptional terminator structure is present immediately after the translational stop codon of the Tet protein [].; GO: 0046677 response to antibiotic
Probab=24.04 E-value=34 Score=17.35 Aligned_cols=9 Identities=56% Similarity=0.910 Sum_probs=7.1
Q ss_pred EecCCceee
Q psy13471 192 KCKKCRRVL 200 (249)
Q Consensus 192 ~CkkCr~~L 200 (249)
+|+||.|+-
T Consensus 2 kC~k~Nrvq 10 (20)
T PF08050_consen 2 KCNKMNRVQ 10 (20)
T ss_pred cccccceEE
Confidence 699998873
No 164
>PRK08624 hypothetical protein; Provisional
Probab=24.00 E-value=48 Score=30.50 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=29.8
Q ss_pred EEEecCCCchhHHHHHHHHHH-----hCCCCHHHHHHHHHhhCC
Q psy13471 82 LVHCYHGVSRSATIVIAYLMK-----RDDLGVQTAFDRVKSARD 120 (249)
Q Consensus 82 LVHC~~G~sRS~tvv~AYLm~-----~~~~s~~~Al~~vr~~Rp 120 (249)
+-||..|-+-++- |+-++|+ ..++++.+|+.+|.+.-.
T Consensus 59 ~yhCF~GCGa~GD-Vf~Fv~~~~~me~~~lsF~eAve~LA~~aG 101 (373)
T PRK08624 59 NFHCYTRCGDIFD-VFELLCKRLKMEGKALSFSKAIRKITKILG 101 (373)
T ss_pred EEEEeCCCCCCCc-eeeehhhhhhccccCCCHHHHHHHHHHHhC
Confidence 6799987766655 4566766 667999999999998854
No 165
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=23.89 E-value=27 Score=21.19 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=10.2
Q ss_pred CCceEEecCCceeeccC
Q psy13471 187 NPNVYKCKKCRRVLFTL 203 (249)
Q Consensus 187 ~~~~~~CkkCr~~L~~~ 203 (249)
.....+|+.|.+.+...
T Consensus 13 ~~~~a~C~~C~~~~~~~ 29 (45)
T PF02892_consen 13 DKKKAKCKYCGKVIKYS 29 (45)
T ss_dssp CSS-EEETTTTEE----
T ss_pred CcCeEEeCCCCeEEeeC
Confidence 35679999999998664
No 166
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=23.49 E-value=61 Score=23.84 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=11.2
Q ss_pred cEEEEecCCCchhHHHHH
Q psy13471 80 AILVHCYHGVSRSATIVI 97 (249)
Q Consensus 80 ~VLVHC~~G~sRS~tvv~ 97 (249)
+|||-|.+| .|.++++
T Consensus 2 ~Ill~C~~G--aSSs~la 17 (99)
T cd05565 2 NVLVLCAGG--GTSGLLA 17 (99)
T ss_pred EEEEECCCC--CCHHHHH
Confidence 589999777 5555543
No 167
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=23.44 E-value=85 Score=27.63 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=14.3
Q ss_pred cEEEEecCCCchhHHHH
Q psy13471 80 AILVHCYHGVSRSATIV 96 (249)
Q Consensus 80 ~VLVHC~~G~sRS~tvv 96 (249)
.|-|=|+.|..||++++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 45567999999999986
No 168
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.32 E-value=85 Score=28.37 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhCC--CcEEEEecCC
Q psy13471 62 LSHFDSAYEFIRESQSE--GAILVHCYHG 88 (249)
Q Consensus 62 ~~~~~~~~~fI~~~~~~--~~VLVHC~~G 88 (249)
+..+..++++|.+...+ .-+|.||..+
T Consensus 145 l~Ei~~Av~~i~~~G~~~~~i~llhC~s~ 173 (329)
T TIGR03569 145 LEEIEAAVGVLRDAGTPDSNITLLHCTTE 173 (329)
T ss_pred HHHHHHHHHHHHHcCCCcCcEEEEEECCC
Confidence 56788889888766222 4789999875
No 169
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=22.89 E-value=1.1e+02 Score=23.94 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHh-hCCCcEEEEecCC
Q psy13471 63 SHFDSAYEFIRES-QSEGAILVHCYHG 88 (249)
Q Consensus 63 ~~~~~~~~fI~~~-~~~~~VLVHC~~G 88 (249)
....-++.+++++ ..|.+|+|+|...
T Consensus 13 ~~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 13 ALEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3566788899999 8999999999553
No 170
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=22.80 E-value=2.3e+02 Score=23.87 Aligned_cols=45 Identities=7% Similarity=0.027 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHh-hCCCcEEEEecCCCchhHHHHHHHHHHhCCCC
Q psy13471 63 SHFDSAYEFIRES-QSEGAILVHCYHGVSRSATIVIAYLMKRDDLG 107 (249)
Q Consensus 63 ~~~~~~~~fI~~~-~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s 107 (249)
...+-+.+.|.+. ...+..|.-|-+|-=++-++.+.|.|.-+|-.
T Consensus 101 ~aa~~I~~~v~~Lt~d~~~~lH~sIAGGRKtMg~~~g~A~sL~gr~ 146 (209)
T TIGR02584 101 AAANFIVQTVAPLCAAQDHQLHASIAGGRKTMGFYLGYALSLFGRE 146 (209)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecCcHHHHHHHHHHHHHHhCCc
Confidence 3445555555665 45677777788886568888888888777654
No 171
>PRK04860 hypothetical protein; Provisional
Probab=22.67 E-value=49 Score=26.65 Aligned_cols=15 Identities=33% Similarity=0.950 Sum_probs=10.5
Q ss_pred CceEEecCCceeecc
Q psy13471 188 PNVYKCKKCRRVLFT 202 (249)
Q Consensus 188 ~~~~~CkkCr~~L~~ 202 (249)
...|+|++|++.|..
T Consensus 141 ~~~YrC~~C~~~l~~ 155 (160)
T PRK04860 141 EAVYRCRRCGETLVF 155 (160)
T ss_pred CccEECCCCCceeEE
Confidence 455888888877654
No 172
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=22.47 E-value=50 Score=20.77 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=9.4
Q ss_pred ceEEecCCcee
Q psy13471 189 NVYKCKKCRRV 199 (249)
Q Consensus 189 ~~~~CkkCr~~ 199 (249)
..|+|++|+..
T Consensus 4 Yey~C~~Cg~~ 14 (52)
T TIGR02605 4 YEYRCTACGHR 14 (52)
T ss_pred EEEEeCCCCCE
Confidence 58999999884
No 173
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=22.16 E-value=2.4e+02 Score=25.19 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=17.7
Q ss_pred CCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 77 SEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 77 ~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
.+..|+|+|..|-.||..+ +.++...|+
T Consensus 73 ~~~~vvvyC~~gG~RS~~a--a~~L~~~G~ 100 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSL--AWLLAQIGF 100 (311)
T ss_pred CCCcEEEEECCCChHHHHH--HHHHHHcCC
Confidence 3445999997554688655 344555565
No 174
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=21.80 E-value=67 Score=23.16 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=12.8
Q ss_pred cEEEEecCCCchhHHH
Q psy13471 80 AILVHCYHGVSRSATI 95 (249)
Q Consensus 80 ~VLVHC~~G~sRS~tv 95 (249)
+|||-|.+|++=|..+
T Consensus 4 kILvvCgsG~~TS~m~ 19 (94)
T PRK10310 4 KIIVACGGAVATSTMA 19 (94)
T ss_pred eEEEECCCchhHHHHH
Confidence 6999999999766443
No 175
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=21.79 E-value=68 Score=23.17 Aligned_cols=13 Identities=46% Similarity=0.733 Sum_probs=11.2
Q ss_pred cEEEEecCCCchh
Q psy13471 80 AILVHCYHGVSRS 92 (249)
Q Consensus 80 ~VLVHC~~G~sRS 92 (249)
+||+-|.+|+|=|
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 5899999999666
No 176
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=21.76 E-value=2.3e+02 Score=25.47 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=40.0
Q ss_pred HHHHHHHhhCCCcEEEEecCCCc-hhHHHHHHHHHHhCC----CCHHHHHHHHHhhCCcccCCHHHHHHH
Q psy13471 68 AYEFIRESQSEGAILVHCYHGVS-RSATIVIAYLMKRDD----LGVQTAFDRVKSARDVISPNEGFMHQL 132 (249)
Q Consensus 68 ~~~fI~~~~~~~~VLVHC~~G~s-RS~tvv~AYLm~~~~----~s~~~Al~~vr~~Rp~i~pn~gf~~qL 132 (249)
+..+|-. ..|-+|+.|...|++ ++++ +-++...| .+.+++.+.+.+......+-+.|--.|
T Consensus 90 ~~a~vlA-~~G~~V~kHG~r~~~s~~Gs---~d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~ 155 (330)
T TIGR01245 90 ASAFVAA-AAGVKVAKHGNRSVSSKSGS---ADVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAM 155 (330)
T ss_pred HHHHHHH-hCCCEEEEeCCCCCCCCccH---HHHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHH
Confidence 3444433 478999999999888 7765 34555555 478889999987765544434443333
No 177
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=21.74 E-value=98 Score=27.61 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=21.6
Q ss_pred HHHHHHHHh--hCCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 67 SAYEFIRES--QSEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 67 ~~~~fI~~~--~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
+.-+.+.+. ..+.+|.|+|..|+ || +++ ++.++..|.
T Consensus 256 el~~~~~~~gi~~~~~iv~yC~sG~-~A-~~~-~~~L~~~G~ 294 (320)
T PLN02723 256 ELKKRFEQEGISLDSPIVASCGTGV-TA-CIL-ALGLHRLGK 294 (320)
T ss_pred HHHHHHHhcCCCCCCCEEEECCcHH-HH-HHH-HHHHHHcCC
Confidence 333444444 66789999998885 44 332 333345554
No 178
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=21.70 E-value=57 Score=19.44 Aligned_cols=13 Identities=31% Similarity=1.009 Sum_probs=7.9
Q ss_pred CceEEecCCceee
Q psy13471 188 PNVYKCKKCRRVL 200 (249)
Q Consensus 188 ~~~~~CkkCr~~L 200 (249)
...|+|..|+.++
T Consensus 4 ~~~YkC~~CGniV 16 (36)
T PF06397_consen 4 GEFYKCEHCGNIV 16 (36)
T ss_dssp TEEEE-TTT--EE
T ss_pred ccEEEccCCCCEE
Confidence 3589999998775
No 179
>PRK07411 hypothetical protein; Validated
Probab=21.55 E-value=1e+02 Score=28.43 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=19.7
Q ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHhCCCC
Q psy13471 76 QSEGAILVHCYHGVSRSATIVIAYLMKRDDLG 107 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s 107 (249)
.++.+|+|+|..|. ||.. + |..++..|.+
T Consensus 340 ~~d~~IVvyC~~G~-RS~~-a-a~~L~~~G~~ 368 (390)
T PRK07411 340 LNGHRLIAHCKMGG-RSAK-A-LGILKEAGIE 368 (390)
T ss_pred CCCCeEEEECCCCH-HHHH-H-HHHHHHcCCC
Confidence 45789999999885 8854 2 3444555653
No 180
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.42 E-value=1.1e+02 Score=22.48 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=19.7
Q ss_pred HHHHHHHHHh-hCCCcEEEEecCCC
Q psy13471 66 DSAYEFIRES-QSEGAILVHCYHGV 89 (249)
Q Consensus 66 ~~~~~fI~~~-~~~~~VLVHC~~G~ 89 (249)
+.++++|.+. .+.++|+.|=..|-
T Consensus 11 ~aAl~Li~~l~~~hgpvmFHQSGGC 35 (116)
T COG3564 11 PAALDLIAELQAEHGPVMFHQSGGC 35 (116)
T ss_pred HHHHHHHHHHHHhcCCEEEeccCCc
Confidence 5678899988 88999999966654
No 181
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=21.29 E-value=33 Score=22.13 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=14.2
Q ss_pred CceEEecCCceeeccCCccccCCC
Q psy13471 188 PNVYKCKKCRRVLFTLNNIFAHNR 211 (249)
Q Consensus 188 ~~~~~CkkCr~~L~~~~~i~~H~~ 211 (249)
...|+|.+|+...-.+=++.-|+.
T Consensus 19 ~~~y~C~~C~~~FC~dCD~fiHE~ 42 (51)
T PF07975_consen 19 SSRYRCPKCKNHFCIDCDVFIHET 42 (51)
T ss_dssp -EEE--TTTT--B-HHHHHTTTTT
T ss_pred CCeEECCCCCCccccCcChhhhcc
Confidence 568999999998877777776764
No 182
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=21.23 E-value=1.2e+02 Score=23.50 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=16.7
Q ss_pred HHHHHHHHHHh-hCCCcEEEEecC
Q psy13471 65 FDSAYEFIRES-QSEGAILVHCYH 87 (249)
Q Consensus 65 ~~~~~~fI~~~-~~~~~VLVHC~~ 87 (249)
..-++..++++ .+|.+|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 56778889998 899999999954
No 183
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=21.23 E-value=1.6e+02 Score=24.05 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHh-hCCCcEEEEecCCCchhHH
Q psy13471 61 LLSHFDSAYEFIRES-QSEGAILVHCYHGVSRSAT 94 (249)
Q Consensus 61 l~~~~~~~~~fI~~~-~~~~~VLVHC~~G~sRS~t 94 (249)
+.+.+..+.+.|-.+ ..|++||++ |.|+|++
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaa 54 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLAC---GNGGSAA 54 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---CCCcchh
Confidence 345566666666666 788888874 5667765
No 184
>PRK05667 dnaG DNA primase; Validated
Probab=21.21 E-value=3.7e+02 Score=26.33 Aligned_cols=41 Identities=22% Similarity=0.494 Sum_probs=30.6
Q ss_pred EEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccC
Q psy13471 82 LVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISP 124 (249)
Q Consensus 82 LVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~p 124 (249)
+.||.+ -+.++- ++-++|...++++.+|+..+.+.-..-.|
T Consensus 57 ~~~CF~-Cg~~Gd-~i~fv~~~~~~sf~eAv~~La~~~gi~~~ 97 (580)
T PRK05667 57 FYHCFG-CGAGGD-VIKFLMEYEGLSFVEAVEELADRAGIELP 97 (580)
T ss_pred eEEECC-CCCCCC-HHHHHHHHhCCCHHHHHHHHHHHhCCCCC
Confidence 589973 345544 57899999999999999999877544333
No 185
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=21.16 E-value=1.3e+02 Score=28.61 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=18.9
Q ss_pred hhCCCcEEEEecCCCchhHHHHHHHHHHhCCC
Q psy13471 75 SQSEGAILVHCYHGVSRSATIVIAYLMKRDDL 106 (249)
Q Consensus 75 ~~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~ 106 (249)
...+.+|+|+|..|. ||... +.+| ...|.
T Consensus 446 l~~~~~iivyC~~G~-rS~~a-a~~L-~~~G~ 474 (482)
T PRK01269 446 LDQSKTYLLYCDRGV-MSRLQ-ALYL-REQGF 474 (482)
T ss_pred cCCCCeEEEECCCCH-HHHHH-HHHH-HHcCC
Confidence 356679999999995 76443 3333 34454
No 186
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=21.16 E-value=2.1e+02 Score=26.04 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=12.9
Q ss_pred hCCCcEEEEecCCCchh
Q psy13471 76 QSEGAILVHCYHGVSRS 92 (249)
Q Consensus 76 ~~~~~VLVHC~~G~sRS 92 (249)
..+..||.||.+|.-.+
T Consensus 145 ~~g~~ILThc~sg~lat 161 (344)
T PRK05720 145 RKGQGILTHCNAGWLAT 161 (344)
T ss_pred cCCCEEEEecCCCccee
Confidence 35678999999996543
No 187
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=21.13 E-value=39 Score=31.57 Aligned_cols=15 Identities=27% Similarity=0.487 Sum_probs=12.2
Q ss_pred eEEecCCceeeccCC
Q psy13471 190 VYKCKKCRRVLFTLN 204 (249)
Q Consensus 190 ~~~CkkCr~~L~~~~ 204 (249)
-||||||++..-...
T Consensus 367 g~rC~kCg~~~~~~~ 381 (421)
T COG1571 367 GFRCKKCGTRARETL 381 (421)
T ss_pred CcccccccccCCccc
Confidence 899999999875543
No 188
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=21.09 E-value=2.7e+02 Score=21.59 Aligned_cols=53 Identities=19% Similarity=0.441 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHHHhhCCCcEEEEecCCCchhHHHHHHHHHHhCCCCHHHHHHHHHhhCCcccCCH
Q psy13471 60 DLLSHFDSAYEFIRESQSEGAILVHCYHGVSRSATIVIAYLMKRDDLGVQTAFDRVKSARDVISPNE 126 (249)
Q Consensus 60 ~l~~~~~~~~~fI~~~~~~~~VLVHC~~G~sRS~tvv~AYLm~~~~~s~~~Al~~vr~~Rp~i~pn~ 126 (249)
++......+.+|+++ ..++.|++=| +-|||...| ++.+++++...|-.+..|.
T Consensus 59 ~L~~l~~~i~~fl~~-~~~~vViiD~-----------lEYL~l~Ng--F~~v~KFL~~LkD~~~~~~ 111 (136)
T PF05763_consen 59 NLHKLLDTIVRFLKE-NGNGVVIIDG-----------LEYLILENG--FESVLKFLASLKDYALLNN 111 (136)
T ss_pred hhHHHHHHHHHHHHh-CCCcEEEEec-----------HHHHHHHcC--HHHHHHHHHHhHHHeeccC
Confidence 444556667777776 4677888887 579999877 7788888887775544333
No 189
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=20.99 E-value=1.6e+02 Score=19.32 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhC
Q psy13471 94 TIVIAYLMKRDDLGVQTAFDRVKSAR 119 (249)
Q Consensus 94 tvv~AYLm~~~~~s~~~Al~~vr~~R 119 (249)
..++.-+.++.++|.++|+.++++..
T Consensus 5 v~~Ie~~A~~~~~s~~ea~~~~~~~~ 30 (62)
T PF12668_consen 5 VFCIEEFAKKLNISGEEAYNYFKRSG 30 (62)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHcC
Confidence 34566677888999999999998653
No 190
>PRK13938 phosphoheptose isomerase; Provisional
Probab=20.89 E-value=2.5e+02 Score=23.17 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=28.5
Q ss_pred CchHHHHHHHHHHHHHh-hCCCcEEEEecCCCchhHHHHHHHHHHh
Q psy13471 59 EDLLSHFDSAYEFIRES-QSEGAILVHCYHGVSRSATIVIAYLMKR 103 (249)
Q Consensus 59 ~~l~~~~~~~~~fI~~~-~~~~~VLVHC~~G~sRS~tvv~AYLm~~ 103 (249)
..+.+.+.++.+.+.+. .++++|+|. |+|+|+.++...-++.
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~L 67 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAEL 67 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHHc
Confidence 34556677777777777 778888764 7788877765554443
No 191
>TIGR00319 desulf_FeS4 desulfoferrodoxin FeS4 iron-binding domain. Neelaredoxin, a monomeric blue non-heme iron protein, lacks this domain.
Probab=20.71 E-value=64 Score=18.48 Aligned_cols=13 Identities=38% Similarity=1.030 Sum_probs=10.9
Q ss_pred CceEEecCCceee
Q psy13471 188 PNVYKCKKCRRVL 200 (249)
Q Consensus 188 ~~~~~CkkCr~~L 200 (249)
...|+|..|+.++
T Consensus 5 ~~~ykC~~Cgniv 17 (34)
T TIGR00319 5 GQVYKCEVCGNIV 17 (34)
T ss_pred CcEEEcCCCCcEE
Confidence 3589999999887
No 192
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=20.06 E-value=93 Score=23.13 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=12.6
Q ss_pred CcEEEEecCCCchhH
Q psy13471 79 GAILVHCYHGVSRSA 93 (249)
Q Consensus 79 ~~VLVHC~~G~sRS~ 93 (249)
.++|.-|.+|.|-|-
T Consensus 2 k~IlLvC~aGmSTSl 16 (102)
T COG1440 2 KKILLVCAAGMSTSL 16 (102)
T ss_pred ceEEEEecCCCcHHH
Confidence 478999999998773
Done!