BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13474
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus
GN=Usp54 PE=1 SV=2
Length = 1588
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 67/102 (65%), Positives = 81/102 (79%)
Query: 1 MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
++ +F+Q Q S E LP D LR ALA+ F D+QRFQLG MDDAAECFEN+L+RIH+HIA
Sbjct: 79 LKGIFNQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIAD 138
Query: 61 EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
E ED+C A+HCI H+KFAMTL EQ VC +CGATS+PLPF Q
Sbjct: 139 ETKEDICTAQHCISHQKFAMTLFEQCVCSSCGATSDPLPFIQ 180
>sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens
GN=USP54 PE=1 SV=4
Length = 1684
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/102 (65%), Positives = 81/102 (79%)
Query: 1 MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
++ +F+Q Q S E LP D LR ALA+ F D+QRFQLG MDDAAECFEN+L+RIH+HIA
Sbjct: 79 LKGIFNQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIAD 138
Query: 61 EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
E ED+C A+HCI H+KFAMTL EQ VC +CGATS+PLPF Q
Sbjct: 139 ETKEDICTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQ 180
>sp|Q6IE24|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus
norvegicus GN=Usp54 PE=2 SV=2
Length = 1588
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/102 (65%), Positives = 79/102 (77%)
Query: 1 MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
++ +F Q Q S E LP D LR ALA+ F D+QRFQLG MDDAAECFEN+L+RIH+HIA
Sbjct: 79 LKGIFKQFQCSSEKVLPSDTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIHFHIAD 138
Query: 61 EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
E ED+C A HCI H+KFAMTL EQ VC +CGATS+PLPF Q
Sbjct: 139 ETKEDICTAPHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQ 180
>sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens
GN=USP53 PE=2 SV=2
Length = 1073
Score = 142 bits (359), Expect = 4e-34, Method: Composition-based stats.
Identities = 65/102 (63%), Positives = 79/102 (77%)
Query: 1 MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
++ +F+Q Q S E ALP D +R ALAE+F D+QRFQLG MDDAAECFENML RIH+HI
Sbjct: 78 LKTIFAQFQHSREKALPSDNIRHALAESFKDEQRFQLGLMDDAAECFENMLERIHFHIVP 137
Query: 61 EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
DMC +K CI H+KFAMTL EQ VC +CGA+S+PLPFT+
Sbjct: 138 SRDADMCTSKSCITHQKFAMTLYEQCVCRSCGASSDPLPFTE 179
>sp|P15975|UBP53_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus
GN=Usp53 PE=2 SV=2
Length = 1069
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 79/102 (77%)
Query: 1 MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHIAS 60
++ +F+Q Q S E ALP D +R ALAE+F D+QRFQLG MDDAAECFEN+L RIH+H+
Sbjct: 78 LKTIFAQFQHSREKALPSDNIRHALAESFKDEQRFQLGLMDDAAECFENILARIHFHLVP 137
Query: 61 EEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEPLPFTQ 102
DMC +K C+ H+KFAMTL EQ VC +CGA+S+PLPFT+
Sbjct: 138 NRDADMCTSKSCVTHQKFAMTLYEQCVCRSCGASSDPLPFTE 179
>sp|Q924S4|KREM1_RAT Kremen protein 1 OS=Rattus norvegicus GN=Kremen1 PE=2 SV=1
Length = 473
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 28 AFFDQQRFQLGFMDDAAECF--ENMLLRIHYHIASEEAEDMCGAKHCIPHEKFAMTLVEQ 85
+F QRF+ M+ CF N H AS E ++C H P ++
Sbjct: 149 SFCRSQRFKFAGMESGYACFCGNNPDYWKHGEAASTECNNVCFGDHTQPCGGDGRIILFD 208
Query: 86 SVCGACGA 93
++ GACG
Sbjct: 209 TLVGACGG 216
>sp|P0CAH9|VF475_ASFWA Uncharacterized protein B475L OS=African swine fever virus (isolate
Warthog/Namibia/Wart80/1980) GN=War-087 PE=3 SV=1
Length = 474
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 1 MQELFSQLQ--SSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHI 58
+Q L+ Q+Q S+ +S+ P L F + +Q D E E LLR +
Sbjct: 234 VQLLYQQIQRSSTSKSSYPLTKFIETLPSEHFSNEEYQKETPADQKEVVETELLRKQELL 293
Query: 59 ASEEAEDMCGAKHCIPHEK 77
S+E + +PH +
Sbjct: 294 TSQELTSKSPNNYPVPHSR 312
>sp|P0CAH8|VF475_ASFP4 Uncharacterized protein B475L OS=African swine fever virus (isolate
Tick/South Africa/Pretoriuskop Pr4/1996) GN=Pret-089
PE=3 SV=1
Length = 487
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 1 MQELFSQLQ--SSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIHYHI 58
+Q L+ Q+Q S+ +S+ P L F + +Q D E E LLR +
Sbjct: 234 VQLLYQQIQRSSTSKSSYPLTKFIETLPSEHFSNEEYQKETPADQKEVVETELLRKQELL 293
Query: 59 ASEEAEDMCGAKHCIPHEK 77
S+E + +PH +
Sbjct: 294 TSQELTSKSPNNYPVPHSR 312
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,583,130
Number of Sequences: 539616
Number of extensions: 1076742
Number of successful extensions: 2209
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2203
Number of HSP's gapped (non-prelim): 11
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)