RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13474
         (105 letters)



>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
           8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 348

 Score = 28.9 bits (63), Expect = 0.091
 Identities = 11/119 (9%), Positives = 24/119 (20%), Gaps = 25/119 (21%)

Query: 1   MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGFMDDAAECFENMLLRIH----- 55
              +   L +     + P   +  + +       +      D+ E    ++  +H     
Sbjct: 69  FGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYS---QQDSQELLLFLMDGLHEDLNK 125

Query: 56  -----------------YHIASEEAEDMCGAKHCIPHEKFAMTLVEQSVCGACGATSEP 97
                            +  A    +        I    F         C  C   S  
Sbjct: 126 ADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRT 184


>d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5
           (TONEBP) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 24.7 bits (54), Expect = 1.5
 Identities = 6/19 (31%), Positives = 8/19 (42%)

Query: 83  VEQSVCGACGATSEPLPFT 101
           V   V    G + +  PFT
Sbjct: 79  VGIYVVTNAGRSHDVQPFT 97


>d1m98a1 a.175.1.1 (A:2-175) Orange carotenoid protein, N-terminal
          domain {Cyanobacteria (Arthrospira maxima) [TaxId:
          129910]}
          Length = 174

 Score = 24.3 bits (53), Expect = 3.3
 Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 5/42 (11%)

Query: 17 PPDALRRALAEAFFDQ-----QRFQLGFMDDAAECFENMLLR 53
           P A     AE    +        Q   M D A   +  + R
Sbjct: 54 APGAANMQFAENTLQEIRQMTPLQQTQAMCDLANRTDTPICR 95


>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1
           (NFATC2) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 23.7 bits (51), Expect = 4.0
 Identities = 6/19 (31%), Positives = 7/19 (36%)

Query: 83  VEQSVCGACGATSEPLPFT 101
           V   V       S+P  FT
Sbjct: 81  VNFYVINGKRKRSQPQHFT 99


>d2zoda1 d.79.4.1 (A:3-154) Selenide, water dikinase SelD {Aquifex
          aeolicus [TaxId: 63363]}
          Length = 152

 Score = 23.5 bits (50), Expect = 5.9
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 16 LPPDALRRALAEAFFDQQRFQLGFMDDAAECFENM 50
          + P  L+  L           L  + D A  +E+ 
Sbjct: 15 VGPGDLQEILKGFNIYTDESTLVSIGDDAGVYEHN 49


>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB),
           dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 107

 Score = 23.1 bits (50), Expect = 6.2
 Identities = 4/10 (40%), Positives = 5/10 (50%)

Query: 92  GATSEPLPFT 101
              SEP+ F 
Sbjct: 88  RELSEPMEFQ 97


>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 23.1 bits (50), Expect = 6.4
 Identities = 4/10 (40%), Positives = 5/10 (50%)

Query: 92  GATSEPLPFT 101
           G  S+   FT
Sbjct: 89  GDVSDSKQFT 98


>d1zt2a1 d.264.1.1 (A:3-329) DNA primase small subunit PriA
          {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 327

 Score = 23.4 bits (50), Expect = 8.5
 Identities = 8/31 (25%), Positives = 11/31 (35%)

Query: 1  MQELFSQLQSSHESALPPDALRRALAEAFFD 31
          ++  F     + E  LP D   R  A   F 
Sbjct: 12 IKSFFRNYYLNAELELPKDMELREFALQPFG 42


>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2
          and 3 {Salmonella typhimurium [TaxId: 90371]}
          Length = 102

 Score = 22.5 bits (48), Expect = 8.7
 Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 3/55 (5%)

Query: 1  MQELFSQLQSSHESALPPDALRRALAEAFFDQQRFQLGF---MDDAAECFENMLL 52
          +     QL++  +        RR   E FF   R         + A       L 
Sbjct: 41 VARYAGQLRARVKKQFATMGERRRFWEKFFVNDRLAQSLANADEKAVNATTERLF 95


>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription
           factor {Human (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score = 22.4 bits (48), Expect = 10.0
 Identities = 6/10 (60%), Positives = 6/10 (60%)

Query: 92  GATSEPLPFT 101
             TSEP PF 
Sbjct: 91  LETSEPKPFL 100


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 388,701
Number of extensions: 16506
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 22
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.3 bits)