Query psy13475
Match_columns 468
No_of_seqs 560 out of 3320
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 20:20:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1954|consensus 100.0 1.2E-98 3E-103 740.2 25.4 382 54-454 17-405 (532)
2 COG1159 Era GTPase [General fu 100.0 4.9E-40 1.1E-44 321.1 10.6 229 93-376 4-260 (298)
3 TIGR00436 era GTP-binding prot 100.0 3E-31 6.6E-36 262.9 12.4 224 96-375 1-251 (270)
4 PRK00089 era GTPase Era; Revie 100.0 1.4E-30 3E-35 260.6 13.0 226 94-376 4-257 (292)
5 PRK15494 era GTPase Era; Provi 100.0 1E-29 2.2E-34 259.9 11.8 228 94-376 51-304 (339)
6 COG0486 ThdF Predicted GTPase 99.9 3.2E-26 6.9E-31 235.9 13.1 194 8-264 137-341 (454)
7 KOG1423|consensus 99.9 3.6E-22 7.7E-27 195.0 11.2 232 91-376 68-359 (379)
8 TIGR00450 mnmE_trmE_thdF tRNA 99.8 8.3E-21 1.8E-25 200.3 14.8 190 9-262 128-325 (442)
9 PRK05291 trmE tRNA modificatio 99.8 2.2E-20 4.8E-25 197.7 12.4 192 9-263 136-337 (449)
10 COG1160 Predicted GTPases [Gen 99.8 3.7E-20 8E-25 190.7 12.1 126 95-264 3-129 (444)
11 KOG1191|consensus 99.8 9.2E-20 2E-24 187.9 10.0 196 9-262 188-404 (531)
12 PF00350 Dynamin_N: Dynamin fa 99.8 1.5E-18 3.2E-23 158.7 9.9 149 98-257 1-168 (168)
13 PF02421 FeoB_N: Ferrous iron 99.8 1.5E-18 3.2E-23 158.2 8.5 117 97-262 2-120 (156)
14 COG1160 Predicted GTPases [Gen 99.8 1.4E-17 3E-22 171.8 15.6 151 96-292 179-333 (444)
15 PRK12298 obgE GTPase CgtA; Rev 99.7 2.2E-17 4.9E-22 171.6 15.2 165 97-310 161-355 (390)
16 PF01926 MMR_HSR1: 50S ribosom 99.7 3.8E-17 8.2E-22 141.0 10.8 115 98-256 2-116 (116)
17 PRK09866 hypothetical protein; 99.7 1.6E-16 3.5E-21 169.9 17.3 155 96-261 70-303 (741)
18 TIGR03156 GTP_HflX GTP-binding 99.7 3.5E-16 7.6E-21 160.8 18.7 198 8-264 109-318 (351)
19 cd04163 Era Era subfamily. Er 99.7 5.1E-16 1.1E-20 139.0 14.1 130 95-268 3-133 (168)
20 PRK00093 GTP-binding protein D 99.7 4.2E-15 9.1E-20 156.9 18.7 151 96-292 174-326 (435)
21 cd01894 EngA1 EngA1 subfamily. 99.6 1.1E-15 2.5E-20 136.5 11.6 123 99-265 1-123 (157)
22 COG0218 Predicted GTPase [Gene 99.6 6.2E-15 1.4E-19 137.9 15.6 127 94-267 23-155 (200)
23 TIGR03594 GTPase_EngA ribosome 99.6 1.9E-15 4.1E-20 159.1 12.8 122 98-263 2-123 (429)
24 PRK09518 bifunctional cytidyla 99.6 1.2E-14 2.6E-19 162.3 18.9 124 95-262 275-398 (712)
25 PRK03003 GTP-binding protein D 99.6 4E-15 8.6E-20 158.9 14.0 124 94-261 37-160 (472)
26 PRK03003 GTP-binding protein D 99.6 1.3E-14 2.8E-19 155.0 17.7 125 95-263 211-338 (472)
27 TIGR03594 GTPase_EngA ribosome 99.6 2.4E-14 5.1E-19 150.8 18.5 129 96-267 173-304 (429)
28 cd01895 EngA2 EngA2 subfamily. 99.6 2.9E-14 6.2E-19 129.0 16.5 124 96-262 3-128 (174)
29 cd04164 trmE TrmE (MnmE, ThdF, 99.6 1.9E-14 4.2E-19 128.3 14.2 122 97-264 3-124 (157)
30 TIGR03598 GTPase_YsxC ribosome 99.6 2.6E-14 5.6E-19 132.7 14.8 127 94-265 17-147 (179)
31 smart00053 DYNc Dynamin, GTPas 99.6 2.6E-14 5.7E-19 139.2 15.3 160 93-262 24-207 (240)
32 PRK00093 GTP-binding protein D 99.6 1.3E-14 2.9E-19 153.1 14.2 122 96-261 2-123 (435)
33 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1.7E-14 3.7E-19 130.8 12.8 115 96-261 1-116 (168)
34 cd01898 Obg Obg subfamily. Th 99.6 1.4E-14 2.9E-19 132.0 11.9 124 98-265 3-132 (170)
35 PRK11058 GTPase HflX; Provisio 99.6 5E-14 1.1E-18 148.2 17.7 123 95-262 197-324 (426)
36 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1.3E-14 2.7E-19 137.1 11.3 126 97-267 2-136 (196)
37 PRK09518 bifunctional cytidyla 99.6 6.6E-14 1.4E-18 156.4 18.1 126 95-263 450-577 (712)
38 cd00881 GTP_translation_factor 99.6 3.9E-14 8.4E-19 130.6 13.5 130 98-265 2-132 (189)
39 cd04104 p47_IIGP_like p47 (47- 99.6 2.3E-14 5.1E-19 135.5 11.9 119 97-261 3-121 (197)
40 cd04171 SelB SelB subfamily. 99.5 7E-14 1.5E-18 126.0 13.7 117 97-263 2-120 (164)
41 PF05049 IIGP: Interferon-indu 99.5 2.7E-14 5.8E-19 146.5 11.3 191 97-337 37-252 (376)
42 cd01884 EF_Tu EF-Tu subfamily. 99.5 7.2E-14 1.6E-18 132.4 13.4 131 97-264 4-135 (195)
43 cd01897 NOG NOG1 is a nucleola 99.5 7.8E-14 1.7E-18 126.9 12.8 127 96-265 1-131 (168)
44 COG1084 Predicted GTPase [Gene 99.5 2.4E-13 5.1E-18 135.2 17.0 130 94-268 167-301 (346)
45 cd01878 HflX HflX subfamily. 99.5 1.8E-13 4E-18 129.3 14.8 126 95-264 41-170 (204)
46 PRK00454 engB GTP-binding prot 99.5 2.3E-13 5.1E-18 127.1 15.3 127 94-267 23-155 (196)
47 PF00009 GTP_EFTU: Elongation 99.5 8.5E-14 1.8E-18 130.4 12.3 74 183-268 69-142 (188)
48 cd04166 CysN_ATPS CysN_ATPS su 99.5 1.1E-13 2.3E-18 132.2 12.3 134 98-261 2-144 (208)
49 PRK12299 obgE GTPase CgtA; Rev 99.5 1.1E-13 2.5E-18 141.3 12.8 124 97-264 160-288 (335)
50 cd01881 Obg_like The Obg-like 99.5 9.8E-14 2.1E-18 126.7 10.5 124 100-267 1-140 (176)
51 cd01886 EF-G Elongation factor 99.5 2.2E-13 4.8E-18 135.3 13.1 128 98-261 2-130 (270)
52 cd01879 FeoB Ferrous iron tran 99.5 2.7E-13 6E-18 121.5 12.3 114 100-263 1-117 (158)
53 cd01889 SelB_euk SelB subfamil 99.5 5.2E-13 1.1E-17 125.3 14.4 71 183-264 67-137 (192)
54 cd01853 Toc34_like Toc34-like 99.5 3.5E-13 7.5E-18 132.4 13.5 125 95-262 31-164 (249)
55 PRK04213 GTP-binding protein; 99.5 5.8E-13 1.3E-17 125.5 13.9 121 94-262 8-145 (201)
56 cd01890 LepA LepA subfamily. 99.5 4E-13 8.6E-18 123.6 12.4 67 184-261 67-133 (179)
57 PRK12296 obgE GTPase CgtA; Rev 99.5 9.6E-13 2.1E-17 140.0 16.3 125 96-265 160-302 (500)
58 CHL00071 tufA elongation facto 99.5 5.5E-13 1.2E-17 140.0 14.3 132 97-265 14-146 (409)
59 PRK12297 obgE GTPase CgtA; Rev 99.5 4.2E-13 9.1E-18 140.8 13.2 122 97-262 160-289 (424)
60 COG2262 HflX GTPases [General 99.5 1.2E-12 2.6E-17 133.7 15.3 191 16-264 120-321 (411)
61 TIGR02729 Obg_CgtA Obg family 99.4 1.4E-12 3.1E-17 133.1 15.1 124 97-265 159-291 (329)
62 PRK09554 feoB ferrous iron tra 99.4 6.4E-13 1.4E-17 148.8 13.5 122 95-262 3-127 (772)
63 cd01876 YihA_EngB The YihA (En 99.4 3E-12 6.4E-17 114.9 15.2 127 98-268 2-131 (170)
64 cd01891 TypA_BipA TypA (tyrosi 99.4 2E-12 4.3E-17 121.6 14.5 67 184-261 65-131 (194)
65 cd00880 Era_like Era (E. coli 99.4 1.6E-12 3.5E-17 114.6 12.6 123 100-266 1-123 (163)
66 cd01861 Rab6 Rab6 subfamily. 99.4 7.7E-13 1.7E-17 119.3 10.3 114 97-261 2-119 (161)
67 cd00154 Rab Rab family. Rab G 99.4 9E-13 2E-17 117.0 10.3 114 97-260 2-118 (159)
68 cd01885 EF2 EF2 (for archaea a 99.4 1.8E-12 3.8E-17 125.3 12.1 67 183-260 72-138 (222)
69 COG3596 Predicted GTPase [Gene 99.4 6.1E-13 1.3E-17 129.6 8.7 122 94-260 37-161 (296)
70 smart00173 RAS Ras subfamily o 99.4 1.5E-12 3.3E-17 117.9 10.8 114 97-261 2-119 (164)
71 cd04168 TetM_like Tet(M)-like 99.4 2.3E-12 5.1E-17 125.7 12.8 128 98-261 2-130 (237)
72 COG0370 FeoB Fe2+ transport sy 99.4 1.4E-12 3E-17 140.5 12.1 138 95-281 3-149 (653)
73 cd01866 Rab2 Rab2 subfamily. 99.4 1.5E-12 3.3E-17 119.2 10.7 115 97-261 6-123 (168)
74 cd01850 CDC_Septin CDC/Septin. 99.4 2.5E-12 5.5E-17 128.2 12.9 138 97-266 6-162 (276)
75 cd04160 Arfrp1 Arfrp1 subfamil 99.4 4.4E-12 9.5E-17 115.2 13.1 116 98-262 2-122 (167)
76 cd04142 RRP22 RRP22 subfamily. 99.4 1.3E-12 2.9E-17 123.8 9.9 123 97-261 2-130 (198)
77 cd04124 RabL2 RabL2 subfamily. 99.4 2E-12 4.3E-17 117.7 10.5 114 97-260 2-117 (161)
78 PLN03127 Elongation factor Tu; 99.4 4.3E-12 9.4E-17 134.5 14.5 132 97-265 63-195 (447)
79 cd04145 M_R_Ras_like M-Ras/R-R 99.4 2E-12 4.3E-17 116.8 10.2 115 97-262 4-122 (164)
80 cd04154 Arl2 Arl2 subfamily. 99.4 4.2E-12 9.1E-17 116.8 12.5 112 95-261 14-129 (173)
81 cd04136 Rap_like Rap-like subf 99.4 2E-12 4.3E-17 116.7 10.2 115 97-262 3-121 (163)
82 cd04159 Arl10_like Arl10-like 99.4 3.7E-12 8E-17 113.2 11.8 112 98-263 2-117 (159)
83 smart00175 RAB Rab subfamily o 99.4 2.4E-12 5.1E-17 116.1 10.6 115 97-261 2-119 (164)
84 cd04109 Rab28 Rab28 subfamily. 99.4 2.8E-12 6.2E-17 122.7 11.7 115 97-261 2-123 (215)
85 cd01868 Rab11_like Rab11-like. 99.4 2.5E-12 5.5E-17 116.7 10.6 115 97-261 5-122 (165)
86 cd01864 Rab19 Rab19 subfamily. 99.4 2.7E-12 5.8E-17 116.8 10.6 116 97-262 5-123 (165)
87 cd04151 Arl1 Arl1 subfamily. 99.4 4.2E-12 9E-17 114.8 11.8 110 98-262 2-115 (158)
88 smart00178 SAR Sar1p-like memb 99.4 4.9E-12 1.1E-16 118.1 12.6 112 94-260 16-131 (184)
89 cd04138 H_N_K_Ras_like H-Ras/N 99.4 2.7E-12 5.9E-17 115.2 10.4 114 97-261 3-120 (162)
90 cd04169 RF3 RF3 subfamily. Pe 99.4 4E-12 8.7E-17 126.2 12.3 133 97-261 4-137 (267)
91 TIGR00487 IF-2 translation ini 99.4 7.2E-12 1.6E-16 136.6 15.3 116 93-261 85-201 (587)
92 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 3E-12 6.4E-17 116.5 10.3 116 97-262 4-122 (166)
93 cd04112 Rab26 Rab26 subfamily. 99.4 3E-12 6.4E-17 120.1 10.3 116 97-261 2-120 (191)
94 cd04119 RJL RJL (RabJ-Like) su 99.4 3.5E-12 7.6E-17 115.1 10.4 115 97-261 2-124 (168)
95 cd04113 Rab4 Rab4 subfamily. 99.4 3.3E-12 7.1E-17 115.5 10.1 115 97-261 2-119 (161)
96 cd04167 Snu114p Snu114p subfam 99.4 5.2E-12 1.1E-16 120.8 12.0 66 184-260 71-136 (213)
97 TIGR00491 aIF-2 translation in 99.4 4.4E-12 9.6E-17 138.2 12.8 130 94-261 3-135 (590)
98 cd04139 RalA_RalB RalA/RalB su 99.4 4E-12 8.6E-17 114.5 10.5 114 97-261 2-119 (164)
99 cd04144 Ras2 Ras2 subfamily. 99.4 4.5E-12 9.8E-17 118.7 11.1 113 98-261 2-120 (190)
100 cd04157 Arl6 Arl6 subfamily. 99.4 6.9E-12 1.5E-16 113.0 11.8 112 98-262 2-119 (162)
101 cd04111 Rab39 Rab39 subfamily. 99.4 4.3E-12 9.3E-17 121.4 11.0 116 97-261 4-123 (211)
102 cd01888 eIF2_gamma eIF2-gamma 99.3 1.1E-11 2.4E-16 117.8 13.6 72 184-265 83-155 (203)
103 cd04156 ARLTS1 ARLTS1 subfamil 99.3 6.7E-12 1.4E-16 113.2 11.5 110 98-261 2-115 (160)
104 cd04165 GTPBP1_like GTPBP1-lik 99.3 1.8E-11 3.9E-16 118.4 15.2 76 184-270 84-161 (224)
105 PRK00049 elongation factor Tu; 99.3 7E-12 1.5E-16 131.2 13.3 131 97-264 14-145 (396)
106 PRK12735 elongation factor Tu; 99.3 7.8E-12 1.7E-16 130.8 13.6 131 97-264 14-145 (396)
107 cd04140 ARHI_like ARHI subfami 99.3 4.7E-12 1E-16 115.4 10.5 114 97-261 3-122 (165)
108 TIGR00484 EF-G translation elo 99.3 1.9E-11 4.1E-16 136.4 17.3 131 96-261 11-141 (689)
109 cd01863 Rab18 Rab18 subfamily. 99.3 5.9E-12 1.3E-16 113.7 10.9 114 97-260 2-119 (161)
110 cd01867 Rab8_Rab10_Rab13_like 99.3 5.8E-12 1.3E-16 115.0 10.8 115 97-261 5-122 (167)
111 TIGR00991 3a0901s02IAP34 GTP-b 99.3 1E-11 2.2E-16 124.6 13.3 125 94-262 37-168 (313)
112 cd01865 Rab3 Rab3 subfamily. 99.3 5.8E-12 1.2E-16 114.8 10.7 116 97-262 3-121 (165)
113 cd04101 RabL4 RabL4 (Rab-like4 99.3 6.1E-12 1.3E-16 113.9 10.8 118 97-263 2-123 (164)
114 PRK12736 elongation factor Tu; 99.3 9.6E-12 2.1E-16 130.0 13.7 133 97-266 14-147 (394)
115 smart00174 RHO Rho (Ras homolo 99.3 3.8E-12 8.1E-17 116.6 9.3 113 98-261 1-116 (174)
116 cd00878 Arf_Arl Arf (ADP-ribos 99.3 7.7E-12 1.7E-16 112.7 11.2 111 98-263 2-116 (158)
117 cd01860 Rab5_related Rab5-rela 99.3 6.3E-12 1.4E-16 113.6 10.5 115 97-261 3-120 (163)
118 cd01862 Rab7 Rab7 subfamily. 99.3 6.5E-12 1.4E-16 114.3 10.7 115 97-261 2-123 (172)
119 cd04175 Rap1 Rap1 subgroup. T 99.3 9.2E-12 2E-16 113.0 11.5 114 97-261 3-120 (164)
120 TIGR00475 selB selenocysteine- 99.3 2.3E-11 4.9E-16 133.0 16.7 118 97-265 2-121 (581)
121 PLN03126 Elongation factor Tu; 99.3 1.1E-11 2.5E-16 132.1 13.7 131 98-265 84-215 (478)
122 cd04170 EF-G_bact Elongation f 99.3 6.3E-12 1.4E-16 124.5 10.8 130 98-262 2-131 (268)
123 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 1.2E-11 2.7E-16 114.1 12.1 110 97-261 17-130 (174)
124 cd04161 Arl2l1_Arl13_like Arl2 99.3 1.4E-11 3E-16 113.1 12.2 110 98-262 2-115 (167)
125 cd01896 DRG The developmentall 99.3 2.1E-11 4.5E-16 118.7 14.1 88 97-229 2-89 (233)
126 cd04108 Rab36_Rab34 Rab34/Rab3 99.3 1E-11 2.2E-16 114.5 11.2 116 97-262 2-121 (170)
127 cd04118 Rab24 Rab24 subfamily. 99.3 9.2E-12 2E-16 116.4 11.1 117 97-262 2-120 (193)
128 cd04132 Rho4_like Rho4-like su 99.3 1.3E-11 2.8E-16 114.7 11.9 112 97-261 2-119 (187)
129 cd04146 RERG_RasL11_like RERG/ 99.3 4.6E-12 1E-16 115.2 8.7 114 98-261 2-120 (165)
130 cd04127 Rab27A Rab27a subfamil 99.3 1.3E-11 2.7E-16 113.8 11.7 122 97-261 6-134 (180)
131 TIGR02528 EutP ethanolamine ut 99.3 7.1E-12 1.5E-16 111.1 9.6 101 97-261 2-102 (142)
132 cd04123 Rab21 Rab21 subfamily. 99.3 7.7E-12 1.7E-16 112.2 9.9 116 97-262 2-120 (162)
133 cd04149 Arf6 Arf6 subfamily. 99.3 1.8E-11 3.9E-16 112.6 12.5 110 97-261 11-124 (168)
134 cd04106 Rab23_lke Rab23-like s 99.3 1.1E-11 2.3E-16 111.9 10.8 117 97-262 2-121 (162)
135 PRK05306 infB translation init 99.3 1.1E-11 2.4E-16 138.5 13.1 116 92-261 287-403 (787)
136 PRK05506 bifunctional sulfate 99.3 1.2E-11 2.6E-16 136.7 12.9 135 97-261 26-171 (632)
137 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 1.8E-11 4E-16 114.0 12.2 115 97-261 5-123 (183)
138 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 1.5E-11 3.2E-16 116.3 11.6 116 97-261 2-124 (201)
139 PRK04004 translation initiatio 99.3 1.8E-11 3.8E-16 133.8 13.7 133 93-260 4-136 (586)
140 PRK10512 selenocysteinyl-tRNA- 99.3 4.5E-11 9.8E-16 131.3 17.0 122 97-268 2-125 (614)
141 cd01883 EF1_alpha Eukaryotic e 99.3 1.2E-11 2.5E-16 119.1 10.9 137 98-260 2-150 (219)
142 cd04137 RheB Rheb (Ras Homolog 99.3 9.3E-12 2E-16 114.8 9.8 114 97-261 3-120 (180)
143 PRK12317 elongation factor 1-a 99.3 1.8E-11 4E-16 129.1 13.3 134 97-261 8-153 (425)
144 CHL00189 infB translation init 99.3 1.3E-11 2.9E-16 136.8 12.6 120 93-261 242-361 (742)
145 PTZ00369 Ras-like protein; Pro 99.3 1.4E-11 3E-16 115.3 10.8 115 96-261 6-124 (189)
146 cd04114 Rab30 Rab30 subfamily. 99.3 1.7E-11 3.8E-16 111.4 11.1 118 96-263 8-128 (169)
147 COG1163 DRG Predicted GTPase [ 99.3 3.2E-11 6.8E-16 119.8 13.5 89 95-229 63-152 (365)
148 cd04122 Rab14 Rab14 subfamily. 99.3 1.5E-11 3.2E-16 112.2 10.5 116 97-262 4-122 (166)
149 cd04176 Rap2 Rap2 subgroup. T 99.3 1.3E-11 2.8E-16 111.8 9.9 114 97-261 3-120 (163)
150 TIGR00231 small_GTP small GTP- 99.3 8.2E-12 1.8E-16 110.0 8.4 121 97-262 3-123 (161)
151 cd04150 Arf1_5_like Arf1-Arf5- 99.3 2.7E-11 5.8E-16 110.3 12.0 110 97-261 2-115 (159)
152 cd00879 Sar1 Sar1 subfamily. 99.3 3.3E-11 7.1E-16 112.3 12.8 113 94-261 18-134 (190)
153 TIGR00485 EF-Tu translation el 99.3 3.6E-11 7.8E-16 125.7 14.4 132 97-265 14-146 (394)
154 cd00157 Rho Rho (Ras homology) 99.3 8.3E-12 1.8E-16 113.5 8.5 116 97-263 2-120 (171)
155 cd01893 Miro1 Miro1 subfamily. 99.3 1.7E-11 3.8E-16 111.9 10.5 113 97-262 2-118 (166)
156 cd00876 Ras Ras family. The R 99.3 1.5E-11 3.3E-16 110.0 9.8 113 98-261 2-118 (160)
157 cd04115 Rab33B_Rab33A Rab33B/R 99.3 2.3E-11 5E-16 111.5 10.9 117 97-262 4-124 (170)
158 cd04125 RabA_like RabA-like su 99.3 2.3E-11 4.9E-16 113.5 10.9 115 97-261 2-119 (188)
159 TIGR01394 TypA_BipA GTP-bindin 99.3 4.5E-11 9.8E-16 130.7 14.5 128 97-261 3-130 (594)
160 PF04548 AIG1: AIG1 family; I 99.3 4.2E-11 9.1E-16 114.8 12.6 130 97-268 2-137 (212)
161 cd04177 RSR1 RSR1 subgroup. R 99.3 2.5E-11 5.3E-16 111.0 10.5 115 97-262 3-121 (168)
162 PRK12739 elongation factor G; 99.3 1.8E-11 3.9E-16 136.6 11.5 131 97-262 10-140 (691)
163 TIGR00437 feoB ferrous iron tr 99.3 1.7E-11 3.6E-16 134.3 11.0 111 102-261 1-113 (591)
164 cd04155 Arl3 Arl3 subfamily. 99.3 3.2E-11 6.8E-16 110.3 11.1 114 95-263 14-131 (173)
165 smart00177 ARF ARF-like small 99.3 5.4E-11 1.2E-15 110.1 12.5 111 96-261 14-128 (175)
166 KOG1145|consensus 99.3 1.2E-10 2.5E-15 122.1 16.2 116 93-260 151-266 (683)
167 KOG0448|consensus 99.3 1.2E-10 2.7E-15 124.7 16.5 154 97-262 111-276 (749)
168 cd04158 ARD1 ARD1 subfamily. 99.3 4.2E-11 9.2E-16 109.9 11.4 109 98-261 2-114 (169)
169 PRK00007 elongation factor G; 99.3 2.3E-11 4.9E-16 135.7 11.4 131 97-262 12-142 (693)
170 cd04147 Ras_dva Ras-dva subfam 99.3 2.4E-11 5.2E-16 114.7 9.9 113 98-261 2-118 (198)
171 cd04105 SR_beta Signal recogni 99.3 5.3E-11 1.2E-15 113.3 12.2 112 96-261 1-123 (203)
172 cd04116 Rab9 Rab9 subfamily. 99.2 4.1E-11 8.8E-16 109.4 10.9 114 97-260 7-127 (170)
173 TIGR02034 CysN sulfate adenyly 99.2 4.4E-11 9.5E-16 125.6 12.5 135 97-261 2-147 (406)
174 cd04110 Rab35 Rab35 subfamily. 99.2 5E-11 1.1E-15 112.7 11.2 116 97-262 8-125 (199)
175 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 7E-11 1.5E-15 108.2 11.8 111 98-262 2-114 (164)
176 TIGR00503 prfC peptide chain r 99.2 8.6E-11 1.9E-15 126.9 14.1 133 94-260 10-145 (527)
177 KOG1489|consensus 99.2 2.5E-11 5.3E-16 120.1 8.8 121 97-262 198-327 (366)
178 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.2 5.6E-11 1.2E-15 109.8 10.8 114 97-261 4-121 (172)
179 PRK05124 cysN sulfate adenylyl 99.2 6.5E-11 1.4E-15 126.5 12.6 135 97-261 29-174 (474)
180 PRK10218 GTP-binding protein; 99.2 1.8E-10 4E-15 126.0 16.2 128 97-261 7-134 (607)
181 PLN03118 Rab family protein; P 99.2 5.9E-11 1.3E-15 113.2 10.9 115 97-262 16-135 (211)
182 cd01882 BMS1 Bms1. Bms1 is an 99.2 1.3E-10 2.8E-15 112.5 13.1 107 96-262 40-148 (225)
183 PRK00741 prfC peptide chain re 99.2 7.7E-11 1.7E-15 127.2 12.6 136 94-261 9-145 (526)
184 PLN03110 Rab GTPase; Provision 99.2 7.3E-11 1.6E-15 113.3 10.9 115 97-261 14-131 (216)
185 cd04143 Rhes_like Rhes_like su 99.2 8.3E-11 1.8E-15 115.5 11.4 114 97-261 2-127 (247)
186 cd00882 Ras_like_GTPase Ras-li 99.2 6.2E-11 1.4E-15 102.8 9.4 70 184-264 45-119 (157)
187 PTZ00133 ADP-ribosylation fact 99.2 1.1E-10 2.5E-15 108.9 11.8 110 97-261 19-132 (182)
188 PRK15467 ethanolamine utilizat 99.2 6E-11 1.3E-15 108.4 9.6 103 97-261 3-105 (158)
189 PF08477 Miro: Miro-like prote 99.2 1.2E-11 2.6E-16 106.3 4.8 113 98-258 2-119 (119)
190 cd00877 Ran Ran (Ras-related n 99.2 6.9E-11 1.5E-15 108.4 9.7 113 97-260 2-117 (166)
191 TIGR02836 spore_IV_A stage IV 99.2 1.3E-10 2.9E-15 119.5 12.6 134 97-260 19-193 (492)
192 PLN00223 ADP-ribosylation fact 99.2 1.8E-10 3.9E-15 107.4 12.5 112 96-262 18-133 (181)
193 TIGR00993 3a0901s04IAP86 chlor 99.2 1.2E-10 2.5E-15 125.8 12.7 123 95-261 118-250 (763)
194 cd04117 Rab15 Rab15 subfamily. 99.2 1.3E-10 2.8E-15 105.8 11.2 116 97-262 2-120 (161)
195 cd01892 Miro2 Miro2 subfamily. 99.2 8.9E-11 1.9E-15 108.0 10.2 116 97-261 6-122 (169)
196 TIGR01393 lepA GTP-binding pro 99.2 1.2E-10 2.5E-15 127.6 12.8 129 97-261 5-136 (595)
197 cd01870 RhoA_like RhoA-like su 99.2 8.3E-11 1.8E-15 107.7 9.7 115 97-262 3-120 (175)
198 cd04135 Tc10 TC10 subfamily. 99.2 7.2E-11 1.6E-15 108.0 9.3 114 97-262 2-119 (174)
199 PRK09602 translation-associate 99.2 3.2E-10 6.9E-15 118.5 14.8 110 97-228 3-113 (396)
200 cd01874 Cdc42 Cdc42 subfamily. 99.2 1.1E-10 2.3E-15 108.3 10.0 115 97-262 3-120 (175)
201 KOG0447|consensus 99.2 5.8E-10 1.3E-14 116.4 16.3 229 14-261 243-493 (980)
202 cd04120 Rab12 Rab12 subfamily. 99.2 1.5E-10 3.3E-15 110.2 10.9 115 97-261 2-119 (202)
203 PLN03108 Rab family protein; P 99.2 1.4E-10 3.1E-15 110.7 10.7 115 97-261 8-125 (210)
204 cd04134 Rho3 Rho3 subfamily. 99.2 9.4E-11 2E-15 109.8 9.3 115 97-263 2-120 (189)
205 cd04148 RGK RGK subfamily. Th 99.2 1.8E-10 3.9E-15 111.0 11.2 114 97-262 2-121 (221)
206 cd04130 Wrch_1 Wrch-1 subfamil 99.2 9.9E-11 2.2E-15 107.6 8.9 114 97-262 2-119 (173)
207 cd04131 Rnd Rnd subfamily. Th 99.2 2E-10 4.3E-15 107.0 10.9 114 97-261 3-119 (178)
208 cd04126 Rab20 Rab20 subfamily. 99.2 2.2E-10 4.8E-15 110.6 11.5 110 97-261 2-114 (220)
209 PLN03071 GTP-binding nuclear p 99.2 2.1E-10 4.5E-15 110.5 11.3 116 96-261 14-131 (219)
210 COG1217 TypA Predicted membran 99.1 1.8E-10 3.9E-15 118.8 10.9 160 97-293 7-168 (603)
211 COG0532 InfB Translation initi 99.1 2.5E-10 5.5E-15 120.2 12.1 117 93-261 3-121 (509)
212 cd04121 Rab40 Rab40 subfamily. 99.1 3.1E-10 6.6E-15 107.0 11.5 115 97-261 8-124 (189)
213 PTZ00416 elongation factor 2; 99.1 1.7E-10 3.7E-15 131.0 11.3 66 184-260 92-157 (836)
214 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.1 3.1E-10 6.6E-15 106.3 10.9 114 97-261 7-123 (182)
215 cd01871 Rac1_like Rac1-like su 99.1 2.6E-10 5.7E-15 105.5 9.7 114 97-261 3-119 (174)
216 PRK05433 GTP-binding protein L 99.1 4.6E-10 1E-14 123.1 13.1 67 184-261 74-140 (600)
217 cd04102 RabL3 RabL3 (Rab-like3 99.1 5.7E-10 1.2E-14 106.4 11.7 117 97-262 2-144 (202)
218 cd04128 Spg1 Spg1p. Spg1p (se 99.1 5.1E-10 1.1E-14 104.5 10.9 113 97-260 2-117 (182)
219 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.1 5.6E-10 1.2E-14 107.9 11.5 111 97-261 3-119 (222)
220 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.1 6.4E-10 1.4E-14 108.2 11.7 113 97-260 15-130 (232)
221 COG0536 Obg Predicted GTPase [ 99.1 3.5E-10 7.7E-15 113.2 9.9 126 98-268 162-297 (369)
222 PF09439 SRPRB: Signal recogni 99.1 3E-10 6.5E-15 106.0 8.9 116 94-261 2-126 (181)
223 PF10662 PduV-EutP: Ethanolami 99.1 5.9E-10 1.3E-14 100.0 10.4 106 97-268 3-111 (143)
224 PRK13351 elongation factor G; 99.1 4.2E-10 9.1E-15 125.7 11.2 131 96-262 9-140 (687)
225 PF00735 Septin: Septin; Inte 99.1 5.7E-10 1.2E-14 111.5 10.9 143 97-273 6-168 (281)
226 TIGR00483 EF-1_alpha translati 99.1 1.1E-09 2.5E-14 115.6 13.0 68 184-261 85-155 (426)
227 PLN00116 translation elongatio 99.1 1E-09 2.2E-14 124.9 12.8 66 184-260 98-163 (843)
228 cd01875 RhoG RhoG subfamily. 99.1 1.3E-09 2.9E-14 102.3 11.5 114 97-261 5-121 (191)
229 TIGR03680 eif2g_arch translati 99.0 2.2E-09 4.8E-14 112.7 14.1 71 184-265 80-152 (406)
230 cd04133 Rop_like Rop subfamily 99.0 1E-09 2.2E-14 102.2 9.9 114 97-261 3-119 (176)
231 PTZ00141 elongation factor 1- 99.0 2.2E-09 4.7E-14 114.0 13.0 65 184-259 85-157 (446)
232 PTZ00327 eukaryotic translatio 99.0 3.9E-09 8.4E-14 112.2 14.5 77 184-270 117-194 (460)
233 TIGR00490 aEF-2 translation el 99.0 1.9E-09 4E-14 121.0 12.3 67 183-260 85-151 (720)
234 PTZ00258 GTP-binding protein; 99.0 1E-09 2.3E-14 113.9 9.5 104 95-228 21-126 (390)
235 cd01900 YchF YchF subfamily. 99.0 6.6E-10 1.4E-14 110.5 7.6 103 98-229 1-104 (274)
236 PRK12740 elongation factor G; 99.0 1.8E-09 3.9E-14 120.3 11.8 67 184-261 60-126 (668)
237 PF00071 Ras: Ras family; Int 99.0 1.2E-09 2.7E-14 98.5 8.2 114 98-261 2-118 (162)
238 cd04129 Rho2 Rho2 subfamily. 99.0 1.4E-09 3E-14 101.7 8.7 113 97-260 3-118 (187)
239 PRK07560 elongation factor EF- 99.0 1.5E-09 3.2E-14 122.0 10.5 130 96-260 21-152 (731)
240 PRK09601 GTP-binding protein Y 99.0 1.4E-09 2.9E-14 111.9 8.9 102 97-229 4-108 (364)
241 PLN00023 GTP-binding protein; 99.0 2.9E-09 6.4E-14 107.7 11.2 128 95-262 21-166 (334)
242 PF00025 Arf: ADP-ribosylation 99.0 3.2E-09 6.9E-14 98.6 10.1 111 96-261 15-129 (175)
243 PRK04000 translation initiatio 99.0 5.3E-09 1.1E-13 110.1 12.8 70 184-264 85-156 (411)
244 smart00176 RAN Ran (Ras-relate 99.0 3.2E-09 7E-14 101.0 10.1 68 184-261 44-113 (200)
245 cd01873 RhoBTB RhoBTB subfamil 98.9 5.3E-09 1.2E-13 99.0 10.9 66 184-261 66-134 (195)
246 COG1100 GTPase SAR1 and relate 98.9 6E-09 1.3E-13 99.1 11.2 117 97-263 7-127 (219)
247 KOG1490|consensus 98.9 3.8E-09 8.3E-14 109.9 9.2 138 94-274 167-308 (620)
248 KOG0094|consensus 98.9 8.7E-09 1.9E-13 95.8 10.6 123 94-266 21-147 (221)
249 cd01858 NGP_1 NGP-1. Autoanti 98.9 2.3E-09 5E-14 97.6 6.6 30 97-126 104-133 (157)
250 PTZ00132 GTP-binding nuclear p 98.9 1.4E-08 3.1E-13 96.9 12.2 67 184-261 58-127 (215)
251 KOG0410|consensus 98.9 1.7E-08 3.6E-13 100.5 12.7 123 94-260 177-307 (410)
252 KOG0092|consensus 98.9 3.9E-09 8.4E-14 97.9 7.7 115 97-261 7-124 (200)
253 COG5019 CDC3 Septin family pro 98.9 1.7E-08 3.7E-13 102.3 12.7 144 97-272 25-187 (373)
254 KOG0462|consensus 98.9 9.6E-09 2.1E-13 108.0 11.2 154 97-292 62-217 (650)
255 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 1.4E-08 3E-13 98.7 11.4 154 98-296 2-162 (232)
256 COG2229 Predicted GTPase [Gene 98.8 3.8E-08 8.3E-13 90.8 12.6 126 94-262 9-136 (187)
257 KOG2486|consensus 98.8 1.2E-08 2.7E-13 99.6 9.2 157 93-292 134-298 (320)
258 COG0480 FusA Translation elong 98.8 1.2E-08 2.7E-13 112.7 10.2 132 95-261 10-142 (697)
259 KOG1486|consensus 98.8 1.3E-08 2.8E-13 98.0 8.8 88 96-229 63-151 (364)
260 cd04103 Centaurin_gamma Centau 98.8 1.4E-08 3E-13 92.6 8.4 107 97-260 2-112 (158)
261 cd04178 Nucleostemin_like Nucl 98.8 7.4E-09 1.6E-13 96.2 6.6 31 96-126 118-148 (172)
262 PLN00043 elongation factor 1-a 98.8 3.5E-08 7.6E-13 104.9 11.6 67 184-260 85-158 (447)
263 COG5256 TEF1 Translation elong 98.8 9.7E-08 2.1E-12 98.1 13.9 135 98-262 10-160 (428)
264 KOG0468|consensus 98.8 1.8E-08 3.8E-13 107.6 8.7 129 97-260 130-262 (971)
265 PRK09435 membrane ATPase/prote 98.8 4.1E-08 8.9E-13 100.2 11.1 64 183-264 148-211 (332)
266 KOG2655|consensus 98.8 6.7E-08 1.5E-12 98.6 12.2 147 97-276 23-187 (366)
267 KOG0078|consensus 98.8 6.5E-08 1.4E-12 91.1 11.0 115 97-261 14-131 (207)
268 PRK13768 GTPase; Provisional 98.8 9E-09 1.9E-13 101.4 5.5 78 184-266 97-181 (253)
269 cd03112 CobW_like The function 98.7 6.7E-09 1.5E-13 95.1 4.3 71 184-259 87-158 (158)
270 cd01899 Ygr210 Ygr210 subfamil 98.7 2.6E-08 5.7E-13 101.2 8.3 43 184-229 69-111 (318)
271 KOG1547|consensus 98.7 2.1E-07 4.6E-12 89.2 13.1 132 97-264 48-201 (336)
272 KOG1144|consensus 98.7 2.3E-08 5E-13 107.8 7.3 136 90-260 470-605 (1064)
273 TIGR00750 lao LAO/AO transport 98.7 2.6E-07 5.6E-12 93.3 14.0 64 183-264 126-189 (300)
274 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 3E-08 6.4E-13 88.8 6.4 29 97-125 85-113 (141)
275 cd01849 YlqF_related_GTPase Yl 98.7 3.2E-08 7E-13 89.9 6.6 29 94-122 99-127 (155)
276 cd01855 YqeH YqeH. YqeH is an 98.7 2.5E-08 5.3E-13 93.6 5.7 26 95-120 127-152 (190)
277 cd01851 GBP Guanylate-binding 98.6 1.6E-07 3.5E-12 90.9 10.2 91 97-229 9-103 (224)
278 KOG0073|consensus 98.6 2.5E-07 5.4E-12 83.9 10.5 109 97-260 18-130 (185)
279 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.2E-07 2.6E-12 95.2 9.5 30 96-125 122-151 (287)
280 KOG0093|consensus 98.6 7E-07 1.5E-11 79.6 11.7 124 89-262 15-141 (193)
281 TIGR01425 SRP54_euk signal rec 98.6 7.7E-07 1.7E-11 93.6 13.8 71 184-261 183-253 (429)
282 PF03193 DUF258: Protein of un 98.6 5.6E-08 1.2E-12 89.2 4.3 27 94-120 34-60 (161)
283 KOG0461|consensus 98.6 7.3E-07 1.6E-11 89.5 12.3 129 97-262 9-137 (522)
284 COG1161 Predicted GTPases [Gen 98.5 8.7E-08 1.9E-12 97.7 5.8 30 97-126 134-163 (322)
285 KOG0458|consensus 98.5 6.9E-07 1.5E-11 95.0 12.1 75 184-268 255-338 (603)
286 COG4108 PrfC Peptide chain rel 98.5 2.3E-07 4.9E-12 95.7 8.2 69 183-262 80-148 (528)
287 TIGR03596 GTPase_YlqF ribosome 98.5 1.6E-07 3.4E-12 93.7 6.6 29 96-124 119-147 (276)
288 TIGR03597 GTPase_YqeH ribosome 98.5 8.8E-08 1.9E-12 99.1 4.8 124 96-261 155-280 (360)
289 PRK12288 GTPase RsgA; Reviewed 98.5 1.6E-07 3.4E-12 96.7 6.0 27 96-122 206-232 (347)
290 PRK12289 GTPase RsgA; Reviewed 98.5 1.7E-07 3.7E-12 96.6 6.0 28 95-122 172-199 (352)
291 KOG0084|consensus 98.5 7.4E-07 1.6E-11 83.2 9.6 116 97-262 11-129 (205)
292 cd01856 YlqF YlqF. Proteins o 98.5 2.8E-07 6E-12 85.2 6.7 27 96-122 116-142 (171)
293 KOG0087|consensus 98.4 3E-07 6.5E-12 86.6 6.2 115 97-261 16-133 (222)
294 KOG0098|consensus 98.4 1.2E-06 2.6E-11 81.1 9.9 119 97-265 8-129 (216)
295 KOG0394|consensus 98.4 3.7E-07 8.1E-12 84.3 6.6 115 97-261 11-132 (210)
296 KOG0395|consensus 98.4 7.3E-07 1.6E-11 84.7 8.5 114 97-261 5-122 (196)
297 COG5192 BMS1 GTP-binding prote 98.4 6E-07 1.3E-11 94.6 8.3 111 94-264 67-180 (1077)
298 KOG0095|consensus 98.4 3.1E-06 6.7E-11 75.6 11.2 125 97-271 9-136 (213)
299 PF03308 ArgK: ArgK protein; 98.4 1.1E-06 2.5E-11 85.9 9.1 90 183-292 121-211 (266)
300 TIGR00157 ribosome small subun 98.4 3.8E-07 8.2E-12 89.5 5.6 28 94-121 119-146 (245)
301 KOG0080|consensus 98.4 9.2E-07 2E-11 80.0 7.5 111 97-260 13-130 (209)
302 PRK14845 translation initiatio 98.4 1.6E-06 3.5E-11 99.8 10.7 66 184-260 526-591 (1049)
303 PRK13796 GTPase YqeH; Provisio 98.4 4.9E-07 1.1E-11 93.8 5.9 25 95-119 160-184 (365)
304 KOG0090|consensus 98.3 1.6E-06 3.5E-11 82.0 8.1 113 95-261 38-159 (238)
305 KOG0075|consensus 98.3 1.1E-06 2.4E-11 78.4 5.8 110 98-261 23-136 (186)
306 COG1162 Predicted GTPases [Gen 98.3 8.1E-07 1.8E-11 88.7 5.3 27 94-120 163-189 (301)
307 KOG1707|consensus 98.3 3.1E-06 6.8E-11 90.1 9.6 110 97-261 11-129 (625)
308 TIGR00092 GTP-binding protein 98.2 3E-06 6.6E-11 87.4 8.4 106 97-229 4-109 (368)
309 KOG3883|consensus 98.2 9.5E-06 2.1E-10 73.0 10.1 122 94-263 8-134 (198)
310 PRK14722 flhF flagellar biosyn 98.2 4.8E-05 1E-09 78.9 16.9 26 93-118 135-160 (374)
311 COG2895 CysN GTPases - Sulfate 98.2 7.9E-06 1.7E-10 82.6 10.6 67 184-262 86-154 (431)
312 TIGR00064 ftsY signal recognit 98.2 1.5E-05 3.2E-10 79.5 12.5 75 184-261 155-231 (272)
313 KOG1424|consensus 98.2 1.4E-06 3.1E-11 91.5 5.0 58 96-197 315-372 (562)
314 KOG1532|consensus 98.2 3.9E-06 8.4E-11 82.2 7.4 76 184-263 116-197 (366)
315 cd01859 MJ1464 MJ1464. This f 98.2 3.1E-06 6.8E-11 76.6 6.5 27 96-122 102-128 (156)
316 PRK05703 flhF flagellar biosyn 98.2 5.3E-05 1.1E-09 80.2 16.3 72 184-261 300-371 (424)
317 COG0012 Predicted GTPase, prob 98.2 3.3E-06 7.1E-11 86.3 6.9 105 97-229 4-109 (372)
318 PF00448 SRP54: SRP54-type pro 98.2 3.7E-06 8E-11 79.8 6.8 71 184-261 84-154 (196)
319 COG4917 EutP Ethanolamine util 98.2 6E-06 1.3E-10 72.0 7.3 108 97-269 3-112 (148)
320 PRK00098 GTPase RsgA; Reviewed 98.2 3E-06 6.5E-11 85.5 6.4 28 94-121 163-190 (298)
321 PRK10416 signal recognition pa 98.1 7.9E-06 1.7E-10 83.3 9.1 75 184-261 197-273 (318)
322 COG1703 ArgK Putative periplas 98.1 2E-05 4.4E-10 78.4 11.5 93 182-292 142-235 (323)
323 PF03029 ATP_bind_1: Conserved 98.1 2.2E-07 4.8E-12 90.8 -2.2 75 185-262 92-171 (238)
324 KOG0079|consensus 98.1 1.3E-05 2.8E-10 71.7 9.0 114 98-261 11-126 (198)
325 KOG1487|consensus 98.1 2.3E-06 4.9E-11 83.1 4.5 88 96-229 60-148 (358)
326 COG0050 TufB GTPases - transla 98.1 1.7E-05 3.7E-10 78.4 10.4 89 184-283 75-164 (394)
327 KOG0446|consensus 98.1 1.8E-06 3.8E-11 95.5 3.6 169 90-262 24-214 (657)
328 PRK11889 flhF flagellar biosyn 98.1 1.9E-05 4.1E-10 82.1 10.8 70 184-261 321-391 (436)
329 PRK12727 flagellar biosynthesi 98.1 0.00019 4.2E-09 77.2 18.5 69 184-260 429-497 (559)
330 KOG0086|consensus 98.1 1.6E-05 3.5E-10 71.4 8.7 114 97-263 11-130 (214)
331 cd01854 YjeQ_engC YjeQ/EngC. 98.1 5.4E-06 1.2E-10 83.3 6.5 28 94-121 160-187 (287)
332 COG3276 SelB Selenocysteine-sp 98.1 6.9E-05 1.5E-09 77.9 14.4 131 97-277 2-133 (447)
333 KOG0467|consensus 98.1 1.2E-05 2.7E-10 87.7 9.3 126 97-259 11-136 (887)
334 COG0523 Putative GTPases (G3E 98.1 3.2E-05 6.8E-10 78.9 11.6 148 96-266 2-164 (323)
335 COG0481 LepA Membrane GTPase L 98.1 7.2E-06 1.6E-10 85.6 6.7 67 183-261 75-142 (603)
336 PF02492 cobW: CobW/HypB/UreG, 98.0 9E-07 1.9E-11 82.5 -0.2 73 184-264 85-158 (178)
337 PRK14723 flhF flagellar biosyn 98.0 0.00015 3.3E-09 81.1 17.2 70 184-261 264-337 (767)
338 COG5257 GCD11 Translation init 98.0 1.3E-05 2.9E-10 80.1 7.8 80 181-270 83-163 (415)
339 PRK14721 flhF flagellar biosyn 98.0 0.0001 2.2E-09 77.6 14.5 69 184-261 270-340 (420)
340 cd03114 ArgK-like The function 98.0 5.4E-05 1.2E-09 68.6 10.4 58 183-258 91-148 (148)
341 KOG2485|consensus 98.0 7.6E-06 1.7E-10 81.6 5.1 24 95-118 143-166 (335)
342 KOG0091|consensus 98.0 3.1E-05 6.7E-10 70.4 8.2 118 97-263 10-132 (213)
343 TIGR02475 CobW cobalamin biosy 98.0 1.9E-05 4E-10 81.3 7.6 82 184-271 93-197 (341)
344 PRK14974 cell division protein 97.9 3.9E-05 8.6E-10 78.6 9.8 71 184-261 223-293 (336)
345 COG1419 FlhF Flagellar GTP-bin 97.9 3.2E-05 6.9E-10 80.2 8.1 140 94-261 202-352 (407)
346 KOG1491|consensus 97.9 1.9E-05 4.2E-10 79.4 6.3 108 94-229 19-126 (391)
347 KOG0074|consensus 97.9 4.2E-05 9.2E-10 68.0 7.6 113 96-262 18-134 (185)
348 PRK11537 putative GTP-binding 97.9 1.2E-05 2.7E-10 81.9 4.6 75 184-263 91-166 (318)
349 KOG0077|consensus 97.9 0.00011 2.3E-09 67.2 9.9 113 94-261 19-135 (193)
350 KOG2423|consensus 97.8 1.2E-05 2.5E-10 82.2 3.7 30 97-126 309-338 (572)
351 KOG0081|consensus 97.8 1.3E-05 2.8E-10 72.5 3.4 66 185-263 68-140 (219)
352 PRK06995 flhF flagellar biosyn 97.8 0.00063 1.4E-08 72.9 16.7 69 184-261 335-405 (484)
353 PRK12726 flagellar biosynthesi 97.8 0.00018 4E-09 74.5 12.0 68 184-261 286-356 (407)
354 KOG4252|consensus 97.8 1.1E-05 2.4E-10 74.3 2.7 123 89-264 14-141 (246)
355 KOG3886|consensus 97.8 4.4E-05 9.5E-10 73.3 6.3 103 186-297 55-165 (295)
356 PRK12723 flagellar biosynthesi 97.8 0.00022 4.8E-09 74.5 12.2 70 184-261 255-326 (388)
357 cd03115 SRP The signal recogni 97.8 0.00034 7.4E-09 64.4 12.0 69 184-261 83-153 (173)
358 PRK12724 flagellar biosynthesi 97.7 6.1E-05 1.3E-09 79.0 7.1 72 184-261 300-373 (432)
359 PRK00771 signal recognition pa 97.7 0.00019 4E-09 76.2 10.6 70 184-261 176-246 (437)
360 KOG0070|consensus 97.7 0.0001 2.2E-09 68.4 7.2 110 97-261 19-132 (181)
361 KOG2484|consensus 97.6 3.4E-05 7.4E-10 79.1 3.7 33 94-126 251-283 (435)
362 KOG0076|consensus 97.6 0.00012 2.5E-09 67.4 6.6 97 184-292 69-169 (197)
363 KOG0097|consensus 97.6 0.00021 4.5E-09 63.5 7.5 115 98-262 14-131 (215)
364 PRK06731 flhF flagellar biosyn 97.6 0.00055 1.2E-08 68.2 11.4 70 184-261 155-225 (270)
365 TIGR00073 hypB hydrogenase acc 97.6 8.7E-05 1.9E-09 70.7 5.2 25 94-118 21-45 (207)
366 PTZ00099 rab6; Provisional 97.6 0.00011 2.4E-09 68.4 5.8 68 184-261 29-99 (176)
367 PRK10867 signal recognition pa 97.6 0.00049 1.1E-08 72.9 11.1 70 184-260 184-253 (433)
368 TIGR00959 ffh signal recogniti 97.5 0.00055 1.2E-08 72.5 10.5 70 184-260 183-252 (428)
369 KOG3859|consensus 97.5 0.00025 5.3E-09 69.8 7.1 139 98-273 45-202 (406)
370 cd01857 HSR1_MMR1 HSR1/MMR1. 97.5 0.00027 5.8E-09 63.1 6.7 55 210-265 4-60 (141)
371 KOG0465|consensus 97.5 0.00012 2.6E-09 78.6 4.8 68 184-262 104-171 (721)
372 KOG0083|consensus 97.4 5.5E-05 1.2E-09 66.6 1.8 82 166-260 32-116 (192)
373 KOG1143|consensus 97.4 0.00015 3.3E-09 73.8 5.0 150 97-269 169-325 (591)
374 KOG0464|consensus 97.4 7E-05 1.5E-09 77.0 1.9 70 181-261 99-168 (753)
375 KOG2743|consensus 97.4 0.001 2.3E-08 66.2 9.9 150 93-268 55-232 (391)
376 cd01858 NGP_1 NGP-1. Autoanti 97.4 0.00036 7.7E-09 63.3 6.3 53 212-265 3-57 (157)
377 KOG0088|consensus 97.3 0.00018 3.8E-09 65.2 3.8 112 97-261 15-132 (218)
378 TIGR03348 VI_IcmF type VI secr 97.3 0.0007 1.5E-08 80.3 9.6 128 93-261 109-257 (1169)
379 COG0552 FtsY Signal recognitio 97.3 0.00063 1.4E-08 68.9 7.8 93 184-292 222-319 (340)
380 PRK01889 GTPase RsgA; Reviewed 97.3 0.0002 4.4E-09 74.1 4.0 25 97-121 197-221 (356)
381 PRK10463 hydrogenase nickel in 97.3 0.00066 1.4E-08 68.1 7.3 22 97-118 106-127 (290)
382 cd01859 MJ1464 MJ1464. This f 97.1 0.00095 2.1E-08 60.3 6.3 56 208-264 3-58 (156)
383 KOG0469|consensus 97.1 0.00047 1E-08 72.5 4.7 160 98-281 22-190 (842)
384 KOG0460|consensus 97.1 0.0015 3.2E-08 66.2 7.7 74 184-268 117-191 (449)
385 KOG0393|consensus 96.9 0.00089 1.9E-08 63.4 4.3 115 97-261 6-123 (198)
386 COG3640 CooC CO dehydrogenase 96.9 0.0017 3.6E-08 62.9 6.0 63 184-260 134-198 (255)
387 KOG0780|consensus 96.9 0.005 1.1E-07 63.4 9.1 71 184-261 184-254 (483)
388 COG5258 GTPBP1 GTPase [General 96.8 0.0025 5.3E-08 65.5 6.9 73 184-266 201-274 (527)
389 KOG0071|consensus 96.8 0.016 3.6E-07 51.8 10.9 116 97-267 19-141 (180)
390 cd04178 Nucleostemin_like Nucl 96.8 0.0021 4.5E-08 59.8 5.7 49 219-268 1-51 (172)
391 TIGR03596 GTPase_YlqF ribosome 96.8 0.0026 5.6E-08 63.5 6.6 54 209-265 13-66 (276)
392 cd01856 YlqF YlqF. Proteins o 96.8 0.0023 4.9E-08 59.0 5.5 53 209-264 11-63 (171)
393 cd02036 MinD Bacterial cell di 96.7 0.011 2.5E-07 53.9 10.0 63 185-260 64-127 (179)
394 KOG0072|consensus 96.7 0.0073 1.6E-07 54.2 8.0 68 185-262 63-134 (182)
395 KOG1534|consensus 96.7 0.0012 2.6E-08 62.8 3.2 19 98-116 6-24 (273)
396 COG1341 Predicted GTPase or GT 96.7 0.0079 1.7E-07 62.5 9.2 26 94-119 72-97 (398)
397 cd01983 Fer4_NifH The Fer4_Nif 96.7 0.01 2.2E-07 47.9 8.1 37 185-230 35-71 (99)
398 cd03222 ABC_RNaseL_inhibitor T 96.7 0.019 4.1E-07 53.6 10.9 26 94-119 24-49 (177)
399 PRK13695 putative NTPase; Prov 96.7 0.0051 1.1E-07 56.8 7.0 46 209-257 88-136 (174)
400 COG0541 Ffh Signal recognition 96.7 0.029 6.2E-07 58.9 13.1 70 184-261 183-253 (451)
401 KOG0466|consensus 96.6 0.0015 3.3E-08 65.1 3.5 141 97-264 40-196 (466)
402 cd02038 FleN-like FleN is a me 96.6 0.015 3.2E-07 51.9 9.5 64 184-260 45-110 (139)
403 COG2884 FtsE Predicted ATPase 96.6 0.009 1.9E-07 56.3 8.2 26 96-121 29-54 (223)
404 PRK09563 rbgA GTPase YlqF; Rev 96.5 0.0043 9.4E-08 62.3 5.6 53 209-264 16-68 (287)
405 PF09547 Spore_IV_A: Stage IV 96.5 0.025 5.4E-07 59.3 11.1 146 97-263 19-196 (492)
406 KOG2203|consensus 96.4 0.0023 4.9E-08 68.2 3.5 26 97-122 39-64 (772)
407 cd03111 CpaE_like This protein 96.4 0.019 4.1E-07 48.8 8.5 59 185-256 44-106 (106)
408 cd01849 YlqF_related_GTPase Yl 96.4 0.0059 1.3E-07 55.3 5.6 46 219-265 1-47 (155)
409 PF02263 GBP: Guanylate-bindin 96.3 0.0057 1.2E-07 60.6 5.3 22 97-118 23-44 (260)
410 cd03110 Fer4_NifH_child This p 96.3 0.015 3.3E-07 53.6 7.8 65 184-261 93-157 (179)
411 PF13555 AAA_29: P-loop contai 96.3 0.004 8.7E-08 48.0 3.1 26 91-116 18-44 (62)
412 COG3523 IcmF Type VI protein s 96.2 0.026 5.6E-07 66.2 10.9 128 94-261 124-270 (1188)
413 COG3840 ThiQ ABC-type thiamine 96.2 0.0035 7.6E-08 58.7 3.1 28 94-121 24-51 (231)
414 COG1618 Predicted nucleotide k 96.2 0.068 1.5E-06 49.2 11.1 49 209-259 92-142 (179)
415 PF00005 ABC_tran: ABC transpo 96.1 0.0037 7.9E-08 54.9 2.8 26 95-120 11-36 (137)
416 cd01855 YqeH YqeH. YqeH is an 96.0 0.021 4.5E-07 53.3 7.5 53 207-262 24-76 (190)
417 COG1136 SalX ABC-type antimicr 96.0 0.0052 1.1E-07 59.6 3.5 25 97-121 33-57 (226)
418 COG1116 TauB ABC-type nitrate/ 96.0 0.0043 9.3E-08 60.6 2.8 25 97-121 31-55 (248)
419 cd02042 ParA ParA and ParB of 96.0 0.032 6.9E-07 46.6 7.8 35 184-230 40-74 (104)
420 PRK12289 GTPase RsgA; Reviewed 96.0 0.013 2.8E-07 60.7 6.1 55 211-265 83-138 (352)
421 cd01131 PilT Pilus retraction 95.9 0.005 1.1E-07 58.3 2.8 24 95-118 1-24 (198)
422 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.064 1.4E-06 48.1 9.9 23 97-119 28-50 (144)
423 PF05879 RHD3: Root hair defec 95.9 0.0092 2E-07 67.6 5.2 87 101-225 1-88 (742)
424 KOG4181|consensus 95.9 0.077 1.7E-06 54.1 11.0 23 97-119 190-212 (491)
425 KOG1533|consensus 95.9 0.0032 6.8E-08 60.9 1.1 75 184-262 97-178 (290)
426 COG4988 CydD ABC-type transpor 95.9 0.015 3.2E-07 62.9 6.3 24 97-120 349-372 (559)
427 KOG0463|consensus 95.8 0.029 6.3E-07 57.6 7.8 71 184-263 219-289 (641)
428 COG1126 GlnQ ABC-type polar am 95.8 0.0082 1.8E-07 57.6 3.4 27 94-120 27-53 (240)
429 cd03223 ABCD_peroxisomal_ALDP 95.7 0.069 1.5E-06 49.0 9.3 24 96-119 28-51 (166)
430 PRK11174 cysteine/glutathione 95.7 0.027 5.7E-07 62.1 7.6 24 96-119 377-400 (588)
431 cd01130 VirB11-like_ATPase Typ 95.7 0.0084 1.8E-07 56.1 3.1 24 95-118 25-48 (186)
432 KOG3887|consensus 95.6 0.094 2E-06 51.1 9.8 72 184-263 75-151 (347)
433 cd03264 ABC_drug_resistance_li 95.5 0.0092 2E-07 56.6 2.9 24 96-119 26-49 (211)
434 PF13207 AAA_17: AAA domain; P 95.5 0.0098 2.1E-07 50.9 2.7 22 97-118 1-22 (121)
435 TIGR00960 3a0501s02 Type II (G 95.5 0.011 2.3E-07 56.5 3.1 26 94-119 28-53 (216)
436 cd03225 ABC_cobalt_CbiO_domain 95.5 0.011 2.3E-07 56.1 3.1 23 97-119 29-51 (211)
437 PF03205 MobB: Molybdopterin g 95.4 0.009 1.9E-07 53.7 2.3 23 96-118 1-23 (140)
438 PF06858 NOG1: Nucleolar GTP-b 95.4 0.045 9.8E-07 41.5 5.7 44 215-258 11-58 (58)
439 cd03261 ABC_Org_Solvent_Resist 95.4 0.011 2.4E-07 57.1 3.1 24 96-119 27-50 (235)
440 PRK10790 putative multidrug tr 95.4 0.015 3.2E-07 64.2 4.4 24 96-119 368-391 (592)
441 KOG0054|consensus 95.4 0.019 4.2E-07 68.2 5.5 26 94-119 545-571 (1381)
442 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.4 0.012 2.6E-07 56.1 3.1 25 95-119 30-54 (218)
443 TIGR01360 aden_kin_iso1 adenyl 95.4 0.012 2.7E-07 54.3 3.0 24 94-117 2-25 (188)
444 smart00010 small_GTPase Small 95.3 0.042 9.1E-07 46.6 6.1 24 97-120 2-25 (124)
445 KOG2484|consensus 95.3 0.037 8E-07 57.4 6.5 62 207-270 136-200 (435)
446 COG3839 MalK ABC-type sugar tr 95.3 0.012 2.6E-07 60.4 3.0 24 97-120 31-54 (338)
447 TIGR02673 FtsE cell division A 95.3 0.013 2.9E-07 55.6 3.2 24 96-119 29-52 (214)
448 cd03226 ABC_cobalt_CbiO_domain 95.3 0.013 2.8E-07 55.4 3.1 25 95-119 26-50 (205)
449 cd03265 ABC_DrrA DrrA is the A 95.3 0.014 3E-07 55.9 3.2 23 96-118 27-49 (220)
450 KOG0096|consensus 95.3 0.062 1.3E-06 50.5 7.3 25 97-121 12-36 (216)
451 COG3638 ABC-type phosphate/pho 95.3 0.014 3E-07 56.8 3.1 22 96-117 31-52 (258)
452 TIGR01166 cbiO cobalt transpor 95.3 0.014 3E-07 54.5 3.2 23 97-119 20-42 (190)
453 KOG1707|consensus 95.3 0.091 2E-06 56.9 9.5 24 98-121 428-451 (625)
454 TIGR02211 LolD_lipo_ex lipopro 95.3 0.014 3E-07 55.8 3.1 26 94-119 30-55 (221)
455 cd03260 ABC_PstB_phosphate_tra 95.2 0.014 3E-07 56.1 3.0 25 95-119 26-50 (227)
456 PF13671 AAA_33: AAA domain; P 95.2 0.013 2.8E-07 51.6 2.7 22 97-118 1-22 (143)
457 cd03263 ABC_subfamily_A The AB 95.2 0.014 3.1E-07 55.6 3.1 23 97-119 30-52 (220)
458 cd03259 ABC_Carb_Solutes_like 95.2 0.015 3.2E-07 55.3 3.2 23 97-119 28-50 (213)
459 smart00382 AAA ATPases associa 95.2 0.017 3.6E-07 49.1 3.2 24 96-119 3-26 (148)
460 PRK13540 cytochrome c biogenes 95.2 0.015 3.3E-07 54.8 3.2 26 94-119 26-51 (200)
461 COG4559 ABC-type hemin transpo 95.2 0.014 3E-07 56.0 2.8 24 97-120 29-52 (259)
462 cd03292 ABC_FtsE_transporter F 95.2 0.015 3.3E-07 55.2 3.1 24 96-119 28-51 (214)
463 TIGR02315 ABC_phnC phosphonate 95.2 0.015 3.3E-07 56.4 3.2 24 96-119 29-52 (243)
464 PRK15177 Vi polysaccharide exp 95.2 0.015 3.4E-07 55.6 3.1 25 95-119 13-37 (213)
465 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.014 3E-07 57.5 2.8 23 96-118 31-53 (254)
466 TIGR02322 phosphon_PhnN phosph 95.2 0.013 2.9E-07 54.0 2.6 22 97-118 3-24 (179)
467 cd03224 ABC_TM1139_LivF_branch 95.2 0.015 3.2E-07 55.6 2.9 23 97-119 28-50 (222)
468 PRK10078 ribose 1,5-bisphospho 95.1 0.015 3.2E-07 54.4 2.9 22 97-118 4-25 (186)
469 cd03262 ABC_HisP_GlnQ_permease 95.1 0.016 3.5E-07 54.9 3.2 24 96-119 27-50 (213)
470 TIGR03608 L_ocin_972_ABC putat 95.1 0.016 3.4E-07 54.7 3.0 23 97-119 26-48 (206)
471 cd03238 ABC_UvrA The excision 95.1 0.016 3.4E-07 54.1 3.0 22 96-117 22-43 (176)
472 cd03293 ABC_NrtD_SsuB_transpor 95.1 0.015 3.3E-07 55.6 3.0 23 97-119 32-54 (220)
473 cd03235 ABC_Metallic_Cations A 95.1 0.016 3.5E-07 55.1 3.0 24 96-119 26-49 (213)
474 PRK10751 molybdopterin-guanine 95.1 0.014 3E-07 54.4 2.5 25 94-118 5-29 (173)
475 cd03257 ABC_NikE_OppD_transpor 95.1 0.017 3.6E-07 55.4 3.1 24 96-119 32-55 (228)
476 KOG0781|consensus 95.1 0.051 1.1E-06 57.6 6.7 74 183-262 466-545 (587)
477 TIGR01189 ccmA heme ABC export 95.1 0.017 3.7E-07 54.3 3.1 25 95-119 26-50 (198)
478 cd03269 ABC_putative_ATPase Th 95.1 0.017 3.7E-07 54.7 3.2 23 97-119 28-50 (210)
479 cd03218 ABC_YhbG The ABC trans 95.1 0.017 3.7E-07 55.6 3.2 24 96-119 27-50 (232)
480 TIGR01193 bacteriocin_ABC ABC- 95.1 0.053 1.2E-06 61.1 7.5 23 97-119 502-524 (708)
481 cd03215 ABC_Carb_Monos_II This 95.0 0.018 3.8E-07 53.6 3.1 26 94-119 25-50 (182)
482 cd03216 ABC_Carb_Monos_I This 95.0 0.018 3.9E-07 52.7 3.1 24 96-119 27-50 (163)
483 cd03268 ABC_BcrA_bacitracin_re 95.0 0.018 3.8E-07 54.6 3.1 25 95-119 26-50 (208)
484 cd03258 ABC_MetN_methionine_tr 95.0 0.018 3.9E-07 55.5 3.2 23 97-119 33-55 (233)
485 PF13521 AAA_28: AAA domain; P 95.0 0.012 2.5E-07 53.7 1.7 22 98-119 2-23 (163)
486 PRK14242 phosphate transporter 95.0 0.017 3.7E-07 56.5 3.0 23 96-118 33-55 (253)
487 PRK11629 lolD lipoprotein tran 95.0 0.018 3.9E-07 55.6 3.1 23 97-119 37-59 (233)
488 TIGR02770 nickel_nikD nickel i 95.0 0.018 3.9E-07 55.6 3.1 24 96-119 13-36 (230)
489 PRK13541 cytochrome c biogenes 95.0 0.019 4.1E-07 54.0 3.1 24 96-119 27-50 (195)
490 KOG2749|consensus 95.0 0.09 1.9E-06 53.9 8.0 51 94-152 102-152 (415)
491 cd03229 ABC_Class3 This class 95.0 0.019 4.2E-07 53.1 3.2 23 96-118 27-49 (178)
492 PRK10584 putative ABC transpor 95.0 0.019 4E-07 55.3 3.1 26 94-119 35-60 (228)
493 COG1149 MinD superfamily P-loo 95.0 0.1 2.2E-06 51.8 8.2 69 185-268 165-234 (284)
494 cd03219 ABC_Mj1267_LivG_branch 95.0 0.018 3.8E-07 55.6 3.0 23 97-119 28-50 (236)
495 cd03301 ABC_MalK_N The N-termi 95.0 0.019 4.1E-07 54.5 3.2 23 97-119 28-50 (213)
496 PRK10908 cell division protein 95.0 0.019 4.2E-07 55.0 3.2 26 94-119 27-52 (222)
497 cd03214 ABC_Iron-Siderophores_ 95.0 0.02 4.3E-07 53.2 3.2 25 95-119 25-49 (180)
498 cd00550 ArsA_ATPase Oxyanion-t 94.9 0.035 7.5E-07 54.8 5.0 72 184-260 125-202 (254)
499 cd03256 ABC_PhnC_transporter A 94.9 0.019 4.2E-07 55.5 3.2 23 97-119 29-51 (241)
500 PRK11248 tauB taurine transpor 94.9 0.019 4.2E-07 56.5 3.2 25 95-119 27-51 (255)
No 1
>KOG1954|consensus
Probab=100.00 E-value=1.2e-98 Score=740.22 Aligned_cols=382 Identities=37% Similarity=0.671 Sum_probs=366.7
Q ss_pred HHHHHHHHHHHHHhhhcchhhhhhccccccCCCCCCccccCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCC
Q psy13475 54 TIETTLKELKRLYDNAIKPLEITYKYRDLSNRHFADPEIFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSP 133 (468)
Q Consensus 54 ~~~~v~~~l~~ly~~~~~ple~~~~~~~~~s~~l~d~~~~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT 133 (468)
....|+++|++||.++++|||+.|+|++|+||.+.|++|+++|||+++|++|+|||||||+|++++++ |.++||+|||
T Consensus 17 ~~~tv~~glkrlY~~kl~PLE~~Yrf~df~sp~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dyp--g~riGpEPTt 94 (532)
T KOG1954|consen 17 VLQTVSEGLKRLYKQKLLPLEELYRFHDFHSPALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYP--GLRIGPEPTT 94 (532)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHhhhhcccccccCcccccCceEEEEeccccchhHHHHHHHhCCCC--ccccCCCCCc
Confidence 46679999999999999999999999999999999999999999999999999999999999999998 6999999999
Q ss_pred ceeEEEecCCCCccccCcccccC--ccccccccccccceeeeEEeecCCCCCcceEEEeCCCCchhhhh-hhhccchhHH
Q psy13475 134 AYFNILSWGESPTILDGTQLAAD--WTFSGLQKFGQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQ-VERQFPFNDA 210 (468)
Q Consensus 134 ~~~~~i~~g~~~~~i~G~~l~~D--~~f~~L~~fg~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~-~~r~~d~~~~ 210 (468)
++|+++|||++++++|||++++| +||++|+.||++|.+++.|.++|++.+.+|+|||||||+++++| ++|+|||+.+
T Consensus 95 d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v 174 (532)
T KOG1954|consen 95 DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGV 174 (532)
T ss_pred ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHH
Confidence 99999999999999999999998 79999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCChHHHHHHhhhhhhccccccCCCCCCeecc
Q psy13475 211 CQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKPEELMRVQGTLIWNISPLMSSSEPPVMYS 290 (468)
Q Consensus 211 ~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~~el~~v~~~l~~~ls~~~~~pe~p~vy~ 290 (468)
++||++++|+||+++|++++++++++.+++.++++++.+++|||||+|+++.++|+||||++||++|+++++||+++||+
T Consensus 175 ~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqVdtqqLmRVyGALmWslgkv~nTpev~rvYi 254 (532)
T KOG1954|consen 175 LEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVMNTPEVSRVYI 254 (532)
T ss_pred HHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEeccccccCHHHHHHHHHHHHHhhhhhcCCCcceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhccceeeEEEEehhhHHhhccCCcccccChhh
Q psy13475 291 TSLWSNPYEVGAPIRLLQAQEHAFLRDLR----NAIDKRVENKIASARRFAVRVRNHAKMVDCYLTTYYNHKTFFGNRKK 366 (468)
Q Consensus 291 ~s~w~~p~~~~~~~~~~~~ee~~l~~eL~----~~~~~~i~~~~~~~~~~~~~~~i~a~i~~~~v~~~~~~~~~~Gk~~~ 366 (468)
+|||++|+....++|+|++|+++|++||+ +++.+++|++++|||+ +++||+|++||... ||.+|||.++
T Consensus 255 gSfw~hPl~~~a~rrLfeaee~dl~rDlq~lp~ka~~rKind~ikrAr~----akvHAyiis~lkke---mp~~~gk~~~ 327 (532)
T KOG1954|consen 255 GSFWDHPLQDPANRRLFEAEEQDLFRDLQTLPRKAALRKLNDLIKRARL----AKVHAYIISCLKKE---MPSVFGKEKK 327 (532)
T ss_pred eccccCcccCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh---hhhhhcchhh
Confidence 99999999999999999999999999985 5999999999999985 89999777776653 8999999987
Q ss_pred HHHHHHhCCCchhhHHHHHhHhCCCCCCCCCHHHHHHHHhcCCCccccccccccccccCCcchhHHHHhhhChHHHhhhc
Q psy13475 367 VADDIIEHPQDYHIYAGLSTLTNISRYDLPDPEVYRDFFRLNPVFEFKKLSDTCTYFRGCPINRLDVAIAYDLPELVGKY 446 (468)
Q Consensus 367 ~~~~~~~~~~~~~i~~~~~~~~~~~~~d~p~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~ 446 (468)
++ +|++++. .||++++++||||+|||||+++||++|+.+||++|++|+ ||+|+.||.||++|||+||.++
T Consensus 328 kk-~lidnl~--~iy~~l~re~~Is~gDfPd~~~mre~l~~~df~kF~~lk-------pklle~vD~mla~di~~Lm~~~ 397 (532)
T KOG1954|consen 328 KK-RLIDNLI--DIYEKLQREHNISPGDFPDVEKMREFLQTQDFSKFKPLK-------PKLLEVVDDMLAYDIAELMGKI 397 (532)
T ss_pred HH-HHHHhHH--HHHHHHhHhhcCCCcCCCCHHHHHHHHhcCChhhccccC-------ccHHHHHHHHHHhhHHHHHHHh
Confidence 75 5999998 799999999999999999999999999999999999886 8899999999999999999999
Q ss_pred cccHHHHH
Q psy13475 447 KKSAETLL 454 (468)
Q Consensus 447 ~~~~~~~~ 454 (468)
++++++..
T Consensus 398 kkee~~~~ 405 (532)
T KOG1954|consen 398 KKEEEAAP 405 (532)
T ss_pred cchhhhCc
Confidence 99988654
No 2
>COG1159 Era GTPase [General function prediction only]
Probab=100.00 E-value=4.9e-40 Score=321.13 Aligned_cols=229 Identities=26% Similarity=0.389 Sum_probs=201.2
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
+++|+|+|+|+||||||||+|+|+|.+++++|++ +||||++
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k---------------------------------------~QTTR~~ 44 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPK---------------------------------------PQTTRNR 44 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCC---------------------------------------cchhhhh
Confidence 4788999999999999999999999999999998 7999999
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEE
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRI 252 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iii 252 (468)
+.|+..... .|++||||||++.+...+++. +++.++..+..+|+|+||+|+.. +++..+..+++.++....|+++
T Consensus 45 I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~--m~~~a~~sl~dvDlilfvvd~~~-~~~~~d~~il~~lk~~~~pvil 119 (298)
T COG1159 45 IRGIVTTDN--AQIIFVDTPGIHKPKHALGEL--MNKAARSALKDVDLILFVVDADE-GWGPGDEFILEQLKKTKTPVIL 119 (298)
T ss_pred eeEEEEcCC--ceEEEEeCCCCCCcchHHHHH--HHHHHHHHhccCcEEEEEEeccc-cCCccHHHHHHHHhhcCCCeEE
Confidence 999996654 899999999999997778888 89999999999999999999998 6788888899999886689999
Q ss_pred EEeCCCCCChHH-HHHH--------hhhhhhccccccCC-------------CCCCeeccCCCCCCCCCCCchHHHHHHH
Q psy13475 253 ILNKADQVKPEE-LMRV--------QGTLIWNISPLMSS-------------SEPPVMYSTSLWSNPYEVGAPIRLLQAQ 310 (468)
Q Consensus 253 VlNK~D~v~~~e-l~~v--------~~~l~~~ls~~~~~-------------pe~p~vy~~s~w~~p~~~~~~~~~~~~e 310 (468)
++||+|.+.++. +... .+..+.++|++.|. |+.|++|+.+ +.+|.+.+|+.+|
T Consensus 120 ~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d-----~itD~~~rf~~aE 194 (298)
T COG1159 120 VVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPED-----QITDRPERFLAAE 194 (298)
T ss_pred EEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChh-----hccCChHHHHHHH
Confidence 999999997665 3333 13456778888876 9999999999 8999999999999
Q ss_pred ---HHHHH---HHHHHHHHHHHHHHHHHhhhccceeeEEEEehhhHHhhccCCcccccChhhHHHHHHhCCC
Q psy13475 311 ---EHAFL---RDLRNAIDKRVENKIASARRFAVRVRNHAKMVDCYLTTYYNHKTFFGNRKKVADDIIEHPQ 376 (468)
Q Consensus 311 ---e~~l~---~eL~~~~~~~i~~~~~~~~~~~~~~~i~a~i~~~~v~~~~~~~~~~Gk~~~~~~~~~~~~~ 376 (468)
|+.++ .|||+++.+.++++..+. ...++|||.| ||++.+||+|+|||+|+++|+|...-.
T Consensus 195 iiREk~~~~l~eElPhsv~VeIe~~~~~~---~~~~~I~a~I---~Ver~sQK~IiIGk~G~~iK~IG~~AR 260 (298)
T COG1159 195 IIREKLLLLLREELPHSVAVEIEEFEERE---KGLLKIHATI---YVERESQKGIIIGKNGAMIKKIGTAAR 260 (298)
T ss_pred HHHHHHHHhcccccCceEEEEEEEEEecC---CCeEEEEEEE---EEecCCccceEECCCcHHHHHHHHHHH
Confidence 66654 489999999999999762 2369999999 999999999999999999998875543
No 3
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.97 E-value=3e-31 Score=262.92 Aligned_cols=224 Identities=21% Similarity=0.307 Sum_probs=176.7
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
|.|+++|+||||||||+|+|+|.+++++++. ++||++.+.+
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~---------------------------------------~~TTr~~i~~ 41 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPK---------------------------------------AQTTRNRISG 41 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEeecCCC---------------------------------------CCcccCcEEE
Confidence 5799999999999999999999998887766 5788887777
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEe
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILN 255 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlN 255 (468)
+..... .+++|+||||+.+......+. +.+.+..++..+|++++|+|++.. .+.+ ..+++.+...+.|+++|+|
T Consensus 42 i~~~~~--~qii~vDTPG~~~~~~~l~~~--~~~~~~~~l~~aDvvl~VvD~~~~-~~~~-~~i~~~l~~~~~p~ilV~N 115 (270)
T TIGR00436 42 IHTTGA--SQIIFIDTPGFHEKKHSLNRL--MMKEARSAIGGVDLILFVVDSDQW-NGDG-EFVLTKLQNLKRPVVLTRN 115 (270)
T ss_pred EEEcCC--cEEEEEECcCCCCCcchHHHH--HHHHHHHHHhhCCEEEEEEECCCC-CchH-HHHHHHHHhcCCCEEEEEE
Confidence 764433 579999999998754334443 556677888999999999999873 3333 5566777777789999999
Q ss_pred CCCCCChHHHHHHh-------h-hhhhccccccCC-------------CCCCeeccCCCCCCCCCCCchHHHHHHH---H
Q psy13475 256 KADQVKPEELMRVQ-------G-TLIWNISPLMSS-------------SEPPVMYSTSLWSNPYEVGAPIRLLQAQ---E 311 (468)
Q Consensus 256 K~D~v~~~el~~v~-------~-~l~~~ls~~~~~-------------pe~p~vy~~s~w~~p~~~~~~~~~~~~e---e 311 (468)
|+|+...+++.... . ...+.+|+..|. |+.|++|+.+ +.++.+.+++.+| |
T Consensus 116 K~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~-----~~t~~~~~~~~~e~ire 190 (270)
T TIGR00436 116 KLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPED-----YVTDQPDRFKISEIIRE 190 (270)
T ss_pred CeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCc-----ccCCCCHHHHHHHHHHH
Confidence 99998655432221 1 135678887776 8899999988 7889999999999 5
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHhhhccceeeEEEEehhhHHhhccCCcccccChhhHHHHHHhCC
Q psy13475 312 HAFL---RDLRNAIDKRVENKIASARRFAVRVRNHAKMVDCYLTTYYNHKTFFGNRKKVADDIIEHP 375 (468)
Q Consensus 312 ~~l~---~eL~~~~~~~i~~~~~~~~~~~~~~~i~a~i~~~~v~~~~~~~~~~Gk~~~~~~~~~~~~ 375 (468)
+.|. +|+|+++.+.++++..+.. ..++|+|.| ||++.+||+|++||+|+++++|...-
T Consensus 191 ~~~~~~~~e~p~~~~~~~~~~~~~~~---~~~~i~~~i---~v~~~s~k~iiig~~g~~ik~i~~~a 251 (270)
T TIGR00436 191 KIIRYTKEEIPHSVRVEIERKSFNEK---GLLKIHALI---SVERESQKKIIIGKNGSMIKAIGIAA 251 (270)
T ss_pred HHHHhcccccCceEEEEEEEEEECCC---CeEEEEEEE---EECcCCceeEEEcCCcHHHHHHHHHH
Confidence 5543 4899999999998875431 247899999 99999999999999999999886544
No 4
>PRK00089 era GTPase Era; Reviewed
Probab=99.97 E-value=1.4e-30 Score=260.61 Aligned_cols=226 Identities=26% Similarity=0.364 Sum_probs=179.4
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
++++|+++|++|||||||+|+|+|.+++++++. ++|+++.+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~---------------------------------------~~tt~~~i 44 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPK---------------------------------------PQTTRHRI 44 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCC---------------------------------------CCcccccE
Confidence 678999999999999999999999999877665 56777777
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
.++..... .+++|+||||+.++....++. +...+...+..+|++++|+|++. .++.....+++.+...+.|+++|
T Consensus 45 ~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~--~~~~~~~~~~~~D~il~vvd~~~-~~~~~~~~i~~~l~~~~~pvilV 119 (292)
T PRK00089 45 RGIVTEDD--AQIIFVDTPGIHKPKRALNRA--MNKAAWSSLKDVDLVLFVVDADE-KIGPGDEFILEKLKKVKTPVILV 119 (292)
T ss_pred EEEEEcCC--ceEEEEECCCCCCchhHHHHH--HHHHHHHHHhcCCEEEEEEeCCC-CCChhHHHHHHHHhhcCCCEEEE
Confidence 77664322 689999999998876555554 56677888999999999999987 56777777888887767899999
Q ss_pred EeCCCCC-ChHHHHHHhh--------hhhhccccccCC-------------CCCCeeccCCCCCCCCCCCchHHHHHHH-
Q psy13475 254 LNKADQV-KPEELMRVQG--------TLIWNISPLMSS-------------SEPPVMYSTSLWSNPYEVGAPIRLLQAQ- 310 (468)
Q Consensus 254 lNK~D~v-~~~el~~v~~--------~l~~~ls~~~~~-------------pe~p~vy~~s~w~~p~~~~~~~~~~~~e- 310 (468)
+||+|+. +.+++.+... ..++.+|+..+. |+.|++|+.+ ..++.+.+++.+|
T Consensus 120 lNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~-----~~td~~~r~~~~Ei 194 (292)
T PRK00089 120 LNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPED-----QITDRPERFLAAEI 194 (292)
T ss_pred EECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCC-----CCCCCCHHHHHHHH
Confidence 9999998 4444433322 223456666554 7778888887 7899999999998
Q ss_pred --HHHHH---HHHHHHHHHHHHHHHHHhhhccceeeEEEEehhhHHhhccCCcccccChhhHHHHHHhCCC
Q psy13475 311 --EHAFL---RDLRNAIDKRVENKIASARRFAVRVRNHAKMVDCYLTTYYNHKTFFGNRKKVADDIIEHPQ 376 (468)
Q Consensus 311 --e~~l~---~eL~~~~~~~i~~~~~~~~~~~~~~~i~a~i~~~~v~~~~~~~~~~Gk~~~~~~~~~~~~~ 376 (468)
|+.+. +|+|+++.+.++++.++ ..++|||.| ||++.+||+|++||+|+++++|...-.
T Consensus 195 iRe~~~~~l~~e~p~~~~v~~~~~~~~-----~~~~i~~~i---~v~~~~~k~i~ig~~g~~i~~i~~~ar 257 (292)
T PRK00089 195 IREKLLRLLGDELPYSVAVEIEKFEER-----GLVRIEATI---YVERDSQKGIIIGKGGAMLKKIGTEAR 257 (292)
T ss_pred HHHHHHhhCCccCCceEEEEEEEEEEC-----CeEEEEEEE---EEccCCceeEEEeCCcHHHHHHHHHHH
Confidence 44443 48899999999988764 248899999 999999999999999999998865543
No 5
>PRK15494 era GTPase Era; Provisional
Probab=99.96 E-value=1e-29 Score=259.89 Aligned_cols=228 Identities=20% Similarity=0.296 Sum_probs=176.1
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+.+.|+++|.+|||||||+|+|+|.+++++++. ++||++..
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k---------------------------------------~~tTr~~~ 91 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPK---------------------------------------VQTTRSII 91 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCC---------------------------------------CCCccCcE
Confidence 445799999999999999999999998876665 46666666
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
.++.... ..++.||||||+.+....+.+. +.+.+...+..||++++|+|+.. .+......+++.++..+.|.++|
T Consensus 92 ~~~~~~~--~~qi~~~DTpG~~~~~~~l~~~--~~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~IlV 166 (339)
T PRK15494 92 TGIITLK--DTQVILYDTPGIFEPKGSLEKA--MVRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPIFL 166 (339)
T ss_pred EEEEEeC--CeEEEEEECCCcCCCcccHHHH--HHHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEEE
Confidence 5544322 2579999999997654444443 55666677899999999999876 45666666777777767788899
Q ss_pred EeCCCCCCh--HHHHHHhh-----hhhhccccccCC-------------CCCCeeccCCCCCCCCCCCchHHHHHHH---
Q psy13475 254 LNKADQVKP--EELMRVQG-----TLIWNISPLMSS-------------SEPPVMYSTSLWSNPYEVGAPIRLLQAQ--- 310 (468)
Q Consensus 254 lNK~D~v~~--~el~~v~~-----~l~~~ls~~~~~-------------pe~p~vy~~s~w~~p~~~~~~~~~~~~e--- 310 (468)
+||+|+.+. .++.+.+. ..++++|+..|. |+.|++|+.+ +.++.+.+++.+|
T Consensus 167 iNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~-----~~td~~~~~~~~eiiR 241 (339)
T PRK15494 167 LNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAED-----DITDLPMRFIAAEITR 241 (339)
T ss_pred EEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCC-----CCCCCCHHHHHHHHHH
Confidence 999998643 22222221 235677887765 9999999998 8999999999999
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHhhhccceeeEEEEehhhHHhhccCCcccccChhhHHHHHHhCCC
Q psy13475 311 EHAFL---RDLRNAIDKRVENKIASARRFAVRVRNHAKMVDCYLTTYYNHKTFFGNRKKVADDIIEHPQ 376 (468)
Q Consensus 311 e~~l~---~eL~~~~~~~i~~~~~~~~~~~~~~~i~a~i~~~~v~~~~~~~~~~Gk~~~~~~~~~~~~~ 376 (468)
|+.|. +|+|+++.+.++++..+.. ..++|+|.| ||++.+||+|+|||+|+++++|...-.
T Consensus 242 e~~~~~~~~EiP~~~~v~i~~~~~~~~---~~~~i~~~i---~v~~~sqk~iiiG~~g~~ik~i~~~ar 304 (339)
T PRK15494 242 EQLFLNLQKELPYKLTVQTEKWEDLKD---KSVKINQVI---VVSRESYKTIILGKNGSKIKEIGAKSR 304 (339)
T ss_pred HHHHhhCCcccCceEEEEEEEEEEcCC---CeEEEEEEE---EECCCCceeEEEcCCcHHHHHHHHHHH
Confidence 55554 4899999999998886432 247899999 999999999999999999998865543
No 6
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.93 E-value=3.2e-26 Score=235.87 Aligned_cols=194 Identities=25% Similarity=0.259 Sum_probs=153.6
Q ss_pred HHHHHHHHHhhhhcccCCC--------CCcchhhHHHHhhcCcchhHH--HHHHHHHHHHHHHHHHHHHhhhcchhhhhh
Q psy13475 8 KKIAQRLQTQKQEDIEIPD--------NLRDKRHVHGILKLDEEFKEE--EELLAKTIETTLKELKRLYDNAIKPLEITY 77 (468)
Q Consensus 8 ~~~~~~~q~~~~~~~~~~~--------~~~~~~~ie~~l~~~ee~~~~--d~~~~~~~~~v~~~l~~ly~~~~~ple~~~ 77 (468)
+...|+.+|++|++|.++. +++.++++|+.|||+||+.+. .......++.+...|.++....
T Consensus 137 ~te~a~r~A~~~l~G~ls~~i~~lr~~li~~~a~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~-------- 208 (454)
T COG0486 137 KTEQAARIALRQLQGALSQLINELREALLELLAQVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATA-------- 208 (454)
T ss_pred CCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhh--------
Confidence 4568999999999999994 567899999999999983322 1122333444444444444321
Q ss_pred ccccccCCCCCCccccCCCE-EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccC
Q psy13475 78 KYRDLSNRHFADPEIFSKPL-VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAAD 156 (468)
Q Consensus 78 ~~~~~~s~~l~d~~~~~~p~-V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D 156 (468)
..+...+.|+ |+++|+||||||||+|+|++++.++|+..
T Consensus 209 ----------~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI------------------------------ 248 (454)
T COG0486 209 ----------KQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDI------------------------------ 248 (454)
T ss_pred ----------hhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCC------------------------------
Confidence 2344557777 99999999999999999999999999987
Q ss_pred ccccccccccccceeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH
Q psy13475 157 WTFSGLQKFGQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET 236 (468)
Q Consensus 157 ~~f~~L~~fg~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~ 236 (468)
++|||+.+++...-+ +.++.++||+|+.+..+.+++. ..+.++..+++||+||+|+|++. ..+.++
T Consensus 249 ---------~GTTRDviee~i~i~--G~pv~l~DTAGiRet~d~VE~i--GIeRs~~~i~~ADlvL~v~D~~~-~~~~~d 314 (454)
T COG0486 249 ---------AGTTRDVIEEDINLN--GIPVRLVDTAGIRETDDVVERI--GIERAKKAIEEADLVLFVLDASQ-PLDKED 314 (454)
T ss_pred ---------CCCccceEEEEEEEC--CEEEEEEecCCcccCccHHHHH--HHHHHHHHHHhCCEEEEEEeCCC-CCchhh
Confidence 789999999877333 3789999999999988888887 78999999999999999999998 457777
Q ss_pred HHHHHHHhcCCCcEEEEEeCCCCCChHH
Q psy13475 237 EAILDQLKGREYQTRIILNKADQVKPEE 264 (468)
Q Consensus 237 ~~ll~~l~~~~~~iiiVlNK~D~v~~~e 264 (468)
..++. +...+.|+++|+||+|+.....
T Consensus 315 ~~~~~-~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 315 LALIE-LLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred HHHHH-hcccCCCEEEEEechhcccccc
Confidence 77777 4455689999999999987654
No 7
>KOG1423|consensus
Probab=99.87 E-value=3.6e-22 Score=194.96 Aligned_cols=232 Identities=16% Similarity=0.225 Sum_probs=170.6
Q ss_pred cccCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccce
Q psy13475 91 EIFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLL 170 (468)
Q Consensus 91 ~~~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~ 170 (468)
+-.+...|+|+|.||+|||||.|.++|.++++||.+ .+||+
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K---------------------------------------~~TTr 108 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRK---------------------------------------VHTTR 108 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCcccccccc---------------------------------------cccee
Confidence 334666799999999999999999999999999988 58999
Q ss_pred eeeEEeecCCCCCcceEEEeCCCCchhhhh--hhhccchhHHHHHhhcccCEEEEEEcCC--CCCCCHhHHHHHHHHhcC
Q psy13475 171 DRLRGLQLPHPLLEKINIVEIPGILEIRKQ--VERQFPFNDACQWFIDRADIIFLVYDPS--KLDVGPETEAILDQLKGR 246 (468)
Q Consensus 171 ~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~--~~r~~d~~~~~~~~~~~aDlIllV~Da~--~~~i~~e~~~ll~~l~~~ 246 (468)
.++.++.+... .+++|+||||+.+.... ......+.+..+.++.+||+|++|+|++ +-.++......++...
T Consensus 109 ~~ilgi~ts~e--TQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys-- 184 (379)
T KOG1423|consen 109 HRILGIITSGE--TQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS-- 184 (379)
T ss_pred eeeeEEEecCc--eEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh--
Confidence 99999986555 89999999999876433 1111124456788899999999999998 3234444444443332
Q ss_pred CCcEEEEEeCCCCCChHH-HHHH----------------h--------------------hhhhhccccccCC-------
Q psy13475 247 EYQTRIILNKADQVKPEE-LMRV----------------Q--------------------GTLIWNISPLMSS------- 282 (468)
Q Consensus 247 ~~~iiiVlNK~D~v~~~e-l~~v----------------~--------------------~~l~~~ls~~~~~------- 282 (468)
..|-++|+||+|...... ++.. + +..++.+|++.|.
T Consensus 185 ~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~Gikdlkq 264 (379)
T KOG1423|consen 185 KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQ 264 (379)
T ss_pred cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHH
Confidence 368999999999864322 1111 0 1113456777665
Q ss_pred ------CCCCeeccCCCCCCCCCCCchHHHHHHH--HHHHH----HHHHHHHHHHHHHHHHHhhhccceeeEEEEehhhH
Q psy13475 283 ------SEPPVMYSTSLWSNPYEVGAPIRLLQAQ--EHAFL----RDLRNAIDKRVENKIASARRFAVRVRNHAKMVDCY 350 (468)
Q Consensus 283 ------pe~p~vy~~s~w~~p~~~~~~~~~~~~e--e~~l~----~eL~~~~~~~i~~~~~~~~~~~~~~~i~a~i~~~~ 350 (468)
|..||-|+.. ..++.+.+++-.| ++.++ +|+++.+..++..+.++- +..++|...+ .
T Consensus 265 yLmsqa~~gpW~y~a~-----i~T~~s~e~l~~e~VReklLd~~pqEVPY~lq~~i~~w~e~~---~g~l~I~~~v---~ 333 (379)
T KOG1423|consen 265 YLMSQAPPGPWKYPAD-----IVTEESPEFLCSESVREKLLDHLPQEVPYNLQVRILSWKERP---AGVLFIQVEV---V 333 (379)
T ss_pred HHHhcCCCCCCCCCcc-----cccccCHHHHHHHHHHHHHHhhCccccCcceEEEEEEeeecC---CcEEEEEEEE---E
Confidence 7788888877 7888888888888 44444 377788888888887642 2236666666 6
Q ss_pred HhhccCCcccccChhhHHHHHHhCCC
Q psy13475 351 LTTYYNHKTFFGNRKKVADDIIEHPQ 376 (468)
Q Consensus 351 v~~~~~~~~~~Gk~~~~~~~~~~~~~ 376 (468)
+.+.+++.+++||+|+++.+|...-+
T Consensus 334 ~pK~s~~klliGkgG~ki~qI~~~a~ 359 (379)
T KOG1423|consen 334 CPKNSQKKLLIGKGGKKISQIGTRAN 359 (379)
T ss_pred cCCCcceeEEEcCCCccHHHHHHHHH
Confidence 88889999999999999998876554
No 8
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.85 E-value=8.3e-21 Score=200.28 Aligned_cols=190 Identities=22% Similarity=0.171 Sum_probs=132.9
Q ss_pred HHHHHHHHhhhhcccCCC--------CCcchhhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhccc
Q psy13475 9 KIAQRLQTQKQEDIEIPD--------NLRDKRHVHGILKLDEEFKEEEELLAKTIETTLKELKRLYDNAIKPLEITYKYR 80 (468)
Q Consensus 9 ~~~~~~q~~~~~~~~~~~--------~~~~~~~ie~~l~~~ee~~~~d~~~~~~~~~v~~~l~~ly~~~~~ple~~~~~~ 80 (468)
...|+.+|++|+.|.+++ ++..++++|+.|||+||+.+. ..+...+..+...|+++.... . .+.
T Consensus 128 t~~~~~~A~~~l~G~ls~~~~~~r~~l~~~~a~iea~iDf~ee~~~~-~~~~~~l~~~~~~l~~ll~~~-~-~~~----- 199 (442)
T TIGR00450 128 NNKVKDIALNKLAGELDQKIEAIRKSLLQLLAQVEVNIDYEEDDDEQ-DSLNQLLLSIIAELKDILNSY-K-LEK----- 199 (442)
T ss_pred CHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHeeEECCcCCCCccH-HHHHHHHHHHHHHHHHHHHHH-H-HHH-----
Confidence 457999999999999994 567889999999999976433 234445666667777666543 1 111
Q ss_pred cccCCCCCCccccCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcccc
Q psy13475 81 DLSNRHFADPEIFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFS 160 (468)
Q Consensus 81 ~~~s~~l~d~~~~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~ 160 (468)
......|+++|++|||||||+|+|++.+.++++..
T Consensus 200 -----------~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~---------------------------------- 234 (442)
T TIGR00450 200 -----------LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI---------------------------------- 234 (442)
T ss_pred -----------hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC----------------------------------
Confidence 11223599999999999999999999887665544
Q ss_pred ccccccccceeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHH
Q psy13475 161 GLQKFGQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAIL 240 (468)
Q Consensus 161 ~L~~fg~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll 240 (468)
++||++......... ...+.++||||+.+....+++. ....+..++..+|++++|+|++. ..+.+.. ++
T Consensus 235 -----pgtTrd~~~~~i~~~--g~~v~l~DTaG~~~~~~~ie~~--gi~~~~~~~~~aD~il~V~D~s~-~~s~~~~-~l 303 (442)
T TIGR00450 235 -----KGTTRDVVEGDFELN--GILIKLLDTAGIREHADFVERL--GIEKSFKAIKQADLVIYVLDASQ-PLTKDDF-LI 303 (442)
T ss_pred -----CCcEEEEEEEEEEEC--CEEEEEeeCCCcccchhHHHHH--HHHHHHHHHhhCCEEEEEEECCC-CCChhHH-HH
Confidence 345555444333222 2568999999997654333322 22445677899999999999986 3444433 56
Q ss_pred HHHhcCCCcEEEEEeCCCCCCh
Q psy13475 241 DQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 241 ~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
..+...+.|+++|+||+|+...
T Consensus 304 ~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 304 IDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHhhCCCCEEEEEECccCCCc
Confidence 6665557899999999998643
No 9
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.83 E-value=2.2e-20 Score=197.74 Aligned_cols=192 Identities=23% Similarity=0.213 Sum_probs=127.0
Q ss_pred HHHHHHHHhhhhcccCCC--------CCcchhhHHHHhhcCcchhH--HHHHHHHHHHHHHHHHHHHHhhhcchhhhhhc
Q psy13475 9 KIAQRLQTQKQEDIEIPD--------NLRDKRHVHGILKLDEEFKE--EEELLAKTIETTLKELKRLYDNAIKPLEITYK 78 (468)
Q Consensus 9 ~~~~~~q~~~~~~~~~~~--------~~~~~~~ie~~l~~~ee~~~--~d~~~~~~~~~v~~~l~~ly~~~~~ple~~~~ 78 (468)
...|+.+|++|++|.+++ +++.++++|+.|||+||+.. ....+...+..+..+|+++....- .
T Consensus 136 t~~~~~~al~~l~G~l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~i~~~i~~l~~~l~~l~~~~~----~--- 208 (449)
T PRK05291 136 TEAAARLALRQLQGALSKLINELREELLELLALVEAAIDFPEEDIEFLSDEKILEKLEELIAELEALLASAR----Q--- 208 (449)
T ss_pred CHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHheEEccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHH----H---
Confidence 457899999999999994 45678899999999997542 111233445555555555543321 0
Q ss_pred cccccCCCCCCccccCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcc
Q psy13475 79 YRDLSNRHFADPEIFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWT 158 (468)
Q Consensus 79 ~~~~~s~~l~d~~~~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~ 158 (468)
. ........|+++|.+|+|||||+|+|++.+.++++..
T Consensus 209 -~---------~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-------------------------------- 246 (449)
T PRK05291 209 -G---------EILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDI-------------------------------- 246 (449)
T ss_pred -H---------HHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCC--------------------------------
Confidence 0 0011223699999999999999999999887655443
Q ss_pred ccccccccccceeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHH
Q psy13475 159 FSGLQKFGQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEA 238 (468)
Q Consensus 159 f~~L~~fg~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ 238 (468)
+++|++......... ...+.++||||+.+....++.. ....+...+..+|++++|+|++. ..+.+...
T Consensus 247 -------~gtT~d~~~~~i~~~--g~~i~l~DT~G~~~~~~~ie~~--gi~~~~~~~~~aD~il~VvD~s~-~~s~~~~~ 314 (449)
T PRK05291 247 -------AGTTRDVIEEHINLD--GIPLRLIDTAGIRETDDEVEKI--GIERSREAIEEADLVLLVLDASE-PLTEEDDE 314 (449)
T ss_pred -------CCcccccEEEEEEEC--CeEEEEEeCCCCCCCccHHHHH--HHHHHHHHHHhCCEEEEEecCCC-CCChhHHH
Confidence 344544443322212 2568999999997643333221 12345567899999999999987 34444444
Q ss_pred HHHHHhcCCCcEEEEEeCCCCCChH
Q psy13475 239 ILDQLKGREYQTRIILNKADQVKPE 263 (468)
Q Consensus 239 ll~~l~~~~~~iiiVlNK~D~v~~~ 263 (468)
++.. ..+.|+++|+||+|+....
T Consensus 315 ~l~~--~~~~piiiV~NK~DL~~~~ 337 (449)
T PRK05291 315 ILEE--LKDKPVIVVLNKADLTGEI 337 (449)
T ss_pred HHHh--cCCCCcEEEEEhhhccccc
Confidence 4443 3457999999999997543
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=3.7e-20 Score=190.71 Aligned_cols=126 Identities=23% Similarity=0.305 Sum_probs=108.5
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
+|.|+|+|+||||||||+|+|+|+..++|+.. +++||+++.
T Consensus 3 ~~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~---------------------------------------pGvTRDr~y 43 (444)
T COG1160 3 TPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDT---------------------------------------PGVTRDRIY 43 (444)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCeeeEeecC---------------------------------------CCCccCCcc
Confidence 37899999999999999999999999988766 689999987
Q ss_pred EeecCCCCCcceEEEeCCCCchhh-hhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIR-KQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~-~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
+..-..+ ..+.+|||+|+.... ..+++. +.+.+..++++||+||||+|+.. ++++.+..+.+.|+..++|+++|
T Consensus 44 ~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~--i~~Qa~~Ai~eADvilfvVD~~~-Git~~D~~ia~~Lr~~~kpviLv 118 (444)
T COG1160 44 GDAEWLG--REFILIDTGGLDDGDEDELQEL--IREQALIAIEEADVILFVVDGRE-GITPADEEIAKILRRSKKPVILV 118 (444)
T ss_pred ceeEEcC--ceEEEEECCCCCcCCchHHHHH--HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCEEEE
Confidence 7653333 569999999999654 346665 67889999999999999999988 89999999999999878999999
Q ss_pred EeCCCCCChHH
Q psy13475 254 LNKADQVKPEE 264 (468)
Q Consensus 254 lNK~D~v~~~e 264 (468)
+||+|..+.++
T Consensus 119 vNK~D~~~~e~ 129 (444)
T COG1160 119 VNKIDNLKAEE 129 (444)
T ss_pred EEcccCchhhh
Confidence 99999875443
No 11
>KOG1191|consensus
Probab=99.80 E-value=9.2e-20 Score=187.89 Aligned_cols=196 Identities=20% Similarity=0.140 Sum_probs=138.8
Q ss_pred HHHHHHHHhhhhcccCCC--------CCcchhhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhccc
Q psy13475 9 KIAQRLQTQKQEDIEIPD--------NLRDKRHVHGILKLDEEFKEEEELLAKTIETTLKELKRLYDNAIKPLEITYKYR 80 (468)
Q Consensus 9 ~~~~~~q~~~~~~~~~~~--------~~~~~~~ie~~l~~~ee~~~~d~~~~~~~~~v~~~l~~ly~~~~~ple~~~~~~ 80 (468)
.-+||.+|+.+.+|+... ++..++++++.+||.++....+....+...++++ |+......+.-.+..
T Consensus 188 t~~q~~~Al~~v~g~~~~l~~~~r~~lIe~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~-l~d~v~s~l~~~~~~---- 262 (531)
T KOG1191|consen 188 TESQRRAALDEVAGEALALCFGWRKILIEALAGLEARIDFEEERPLEEIETVEIFIESLS-LLDDVLSHLNKADEI---- 262 (531)
T ss_pred hHhhhhhhhhhhcchhHHhhhhHHHHHHHHHhccceeechhhcCchhhccchhhhhHHHH-HHHHHHHHHHhhhhH----
Confidence 468999999999999964 3567889999999999887766555544444444 222222211111111
Q ss_pred cccCCCCCCccccCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcccc
Q psy13475 81 DLSNRHFADPEIFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFS 160 (468)
Q Consensus 81 ~~~s~~l~d~~~~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~ 160 (468)
......+.|+|+|+||+|||||+|+|...+.++||+.
T Consensus 263 ---------e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv---------------------------------- 299 (531)
T KOG1191|consen 263 ---------ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPV---------------------------------- 299 (531)
T ss_pred ---------HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCC----------------------------------
Confidence 1122334699999999999999999999999999887
Q ss_pred ccccccccceeeeEEeecCCCCCcceEEEeCCCCch-hhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH--
Q psy13475 161 GLQKFGQGLLDRLRGLQLPHPLLEKINIVEIPGILE-IRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-- 237 (468)
Q Consensus 161 ~L~~fg~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~-~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-- 237 (468)
++|||+.+......+ +..+.|+||+|+.+ ..+.++.. ..+.++..+.+||+|++|+||.... ..++.
T Consensus 300 -----~GTTRDaiea~v~~~--G~~v~L~DTAGiRe~~~~~iE~~--gI~rA~k~~~~advi~~vvda~~~~-t~sd~~i 369 (531)
T KOG1191|consen 300 -----PGTTRDAIEAQVTVN--GVPVRLSDTAGIREESNDGIEAL--GIERARKRIERADVILLVVDAEESD-TESDLKI 369 (531)
T ss_pred -----CCcchhhheeEeecC--CeEEEEEeccccccccCChhHHH--hHHHHHHHHhhcCEEEEEecccccc-cccchHH
Confidence 689999998877544 48899999999998 33334443 5678899999999999999995422 23332
Q ss_pred -HHHHHHh---------cCCCcEEEEEeCCCCCCh
Q psy13475 238 -AILDQLK---------GREYQTRIILNKADQVKP 262 (468)
Q Consensus 238 -~ll~~l~---------~~~~~iiiVlNK~D~v~~ 262 (468)
+.++... ....|+++|.||+|+..+
T Consensus 370 ~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 370 ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 3333322 122588999999998754
No 12
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.76 E-value=1.5e-18 Score=158.74 Aligned_cols=149 Identities=24% Similarity=0.423 Sum_probs=99.7
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccc-------cCccccccccc-----
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLA-------ADWTFSGLQKF----- 165 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~-------~D~~f~~L~~f----- 165 (468)
|+|+|..|+|||||||+|+|.++. ++|..|+|..++.+.+|++.....+.... ....+..+...
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~il----p~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPIL----PSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEF 76 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-S----SSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccC----cccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccc
Confidence 789999999999999999999874 47888999999999999776643211111 11122222111
Q ss_pred ------cccceeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCH-hHHH
Q psy13475 166 ------GQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGP-ETEA 238 (468)
Q Consensus 166 ------g~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~-e~~~ 238 (468)
...............+...+++||||||+.+..... .+.+.+++..+|++|+|++++. ..+. +...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~------~~~~~~~~~~~d~vi~V~~~~~-~~~~~~~~~ 149 (168)
T PF00350_consen 77 DSIEGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH------TEITEEYLPKADVVIFVVDANQ-DLTESDMEF 149 (168)
T ss_dssp HHHHTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT------SHHHHHHHSTTEEEEEEEETTS-TGGGHHHHH
T ss_pred ccccccccccccceeEEeeccccccceEEEeCCccccchhhh------HHHHHHhhccCCEEEEEeccCc-ccchHHHHH
Confidence 011111223333334555789999999998743221 2568888999999999999998 4443 4445
Q ss_pred HHHHHhcCCCcEEEEEeCC
Q psy13475 239 ILDQLKGREYQTRIILNKA 257 (468)
Q Consensus 239 ll~~l~~~~~~iiiVlNK~ 257 (468)
+.+.+......+++|+||+
T Consensus 150 l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 150 LKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHHTTTCSSEEEEEE-G
T ss_pred HHHHhcCCCCeEEEEEcCC
Confidence 5566666677899999995
No 13
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.76 E-value=1.5e-18 Score=158.22 Aligned_cols=117 Identities=20% Similarity=0.328 Sum_probs=85.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.||+|||||+|+|+|.+.. ++.. +++|.+...+.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~-v~n~---------------------------------------pG~Tv~~~~g~ 41 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQK-VGNW---------------------------------------PGTTVEKKEGI 41 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE-EEES---------------------------------------TTSSSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCce-ecCC---------------------------------------CCCCeeeeeEE
Confidence 4899999999999999999999843 3444 67777877776
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhh--cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFI--DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIIL 254 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~--~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVl 254 (468)
....+ ..+.||||||+.+....... ..+++.++ ++.|++++|+|++.+ +....+..++.+.+.|+++|+
T Consensus 42 ~~~~~--~~~~lvDlPG~ysl~~~s~e----e~v~~~~l~~~~~D~ii~VvDa~~l---~r~l~l~~ql~e~g~P~vvvl 112 (156)
T PF02421_consen 42 FKLGD--QQVELVDLPGIYSLSSKSEE----ERVARDYLLSEKPDLIIVVVDATNL---ERNLYLTLQLLELGIPVVVVL 112 (156)
T ss_dssp EEETT--EEEEEEE----SSSSSSSHH----HHHHHHHHHHTSSSEEEEEEEGGGH---HHHHHHHHHHHHTTSSEEEEE
T ss_pred EEecC--ceEEEEECCCcccCCCCCcH----HHHHHHHHhhcCCCEEEEECCCCCH---HHHHHHHHHHHHcCCCEEEEE
Confidence 64333 78999999999765332111 13444444 689999999999874 445567788888899999999
Q ss_pred eCCCCCCh
Q psy13475 255 NKADQVKP 262 (468)
Q Consensus 255 NK~D~v~~ 262 (468)
||+|....
T Consensus 113 N~~D~a~~ 120 (156)
T PF02421_consen 113 NKMDEAER 120 (156)
T ss_dssp ETHHHHHH
T ss_pred eCHHHHHH
Confidence 99997643
No 14
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.75 E-value=1.4e-17 Score=171.80 Aligned_cols=151 Identities=21% Similarity=0.210 Sum_probs=115.0
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|+||+|||||+|+|+|++..+|++. ++|||+.+..
T Consensus 179 ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~---------------------------------------aGTTRD~I~~ 219 (444)
T COG1160 179 IKIAIIGRPNVGKSSLINAILGEERVIVSDI---------------------------------------AGTTRDSIDI 219 (444)
T ss_pred eEEEEEeCCCCCchHHHHHhccCceEEecCC---------------------------------------CCccccceee
Confidence 3599999999999999999999999988876 6889988876
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhh--hccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVE--RQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~--r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
....+ +..+.+|||.|+..-.+..+ +.| -...+...+++||++++|+|++. ++++++.+++..+.+.+.++++|
T Consensus 220 ~~e~~--~~~~~liDTAGiRrk~ki~e~~E~~-Sv~rt~~aI~~a~vvllviDa~~-~~~~qD~~ia~~i~~~g~~~vIv 295 (444)
T COG1160 220 EFERD--GRKYVLIDTAGIRRKGKITESVEKY-SVARTLKAIERADVVLLVIDATE-GISEQDLRIAGLIEEAGRGIVIV 295 (444)
T ss_pred eEEEC--CeEEEEEECCCCCcccccccceEEE-eehhhHhHHhhcCEEEEEEECCC-CchHHHHHHHHHHHHcCCCeEEE
Confidence 66333 37899999999986433321 222 23456677999999999999999 89999999999999999999999
Q ss_pred EeCCCCCChH--HHHHHhhhhhhccccccCCCCCCeeccCC
Q psy13475 254 LNKADQVKPE--ELMRVQGTLIWNISPLMSSSEPPVMYSTS 292 (468)
Q Consensus 254 lNK~D~v~~~--el~~v~~~l~~~ls~~~~~pe~p~vy~~s 292 (468)
+||||++..+ .+......+.. .+-.....|.+|++.
T Consensus 296 vNKWDl~~~~~~~~~~~k~~i~~---~l~~l~~a~i~~iSA 333 (444)
T COG1160 296 VNKWDLVEEDEATMEEFKKKLRR---KLPFLDFAPIVFISA 333 (444)
T ss_pred EEccccCCchhhHHHHHHHHHHH---HhccccCCeEEEEEe
Confidence 9999998753 22222222211 122224578888887
No 15
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=2.2e-17 Score=171.64 Aligned_cols=165 Identities=17% Similarity=0.171 Sum_probs=111.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
-|+|||.||||||||||+|++.+. .++.. ++||+....++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~---------------------------------------p~TT~~p~~Gi 200 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADY---------------------------------------PFTTLVPNLGV 200 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCC---------------------------------------CCCccCcEEEE
Confidence 499999999999999999998764 44444 57888877776
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCC---CCCHhHHHHHHHHhcC-----CC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKL---DVGPETEAILDQLKGR-----EY 248 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~---~i~~e~~~ll~~l~~~-----~~ 248 (468)
.... ....++|+||||+..+... ..+ +.......++++|++++|+|++.+ +.......+++.+... ..
T Consensus 201 v~~~-~~~~i~~vDtPGi~~~a~~-~~~--Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~k 276 (390)
T PRK12298 201 VRVD-DERSFVVADIPGLIEGASE-GAG--LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEK 276 (390)
T ss_pred EEeC-CCcEEEEEeCCCccccccc-hhh--HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCC
Confidence 5322 1245999999999865422 111 112233468999999999998732 2223445555655542 47
Q ss_pred cEEEEEeCCCCCChHHHHHHh----hh-----hhhccccccCC-------------CCCCeeccCCCCCCCCCCCchHHH
Q psy13475 249 QTRIILNKADQVKPEELMRVQ----GT-----LIWNISPLMSS-------------SEPPVMYSTSLWSNPYEVGAPIRL 306 (468)
Q Consensus 249 ~iiiVlNK~D~v~~~el~~v~----~~-----l~~~ls~~~~~-------------pe~p~vy~~s~w~~p~~~~~~~~~ 306 (468)
|+++|+||+|+...+++.... .. .++.+|+..+. ++.|++|+.+ ..++.+.++
T Consensus 277 P~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~-----~~td~~~~~ 351 (390)
T PRK12298 277 PRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPREEAEE-----AEAPEKVEF 351 (390)
T ss_pred CEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCcccCCcc-----cccCccHHH
Confidence 999999999998654432211 11 23456776665 6778888877 677788888
Q ss_pred HHHH
Q psy13475 307 LQAQ 310 (468)
Q Consensus 307 ~~~e 310 (468)
+.+|
T Consensus 352 ~~~E 355 (390)
T PRK12298 352 MWDD 355 (390)
T ss_pred HHHH
Confidence 7765
No 16
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.72 E-value=3.8e-17 Score=140.98 Aligned_cols=115 Identities=26% Similarity=0.266 Sum_probs=79.7
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+|+|.+|+|||||||+|+|.+...++.. +.+|+....+..
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~---------------------------------------~~~T~~~~~~~~ 42 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSNI---------------------------------------PGTTRDPVYGQF 42 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESSS---------------------------------------TTSSSSEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHhcccccccccc---------------------------------------ccceeeeeeeee
Confidence 89999999999999999999776554433 123333222211
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
... ...+.|+||||+.+........ .....+...+..+|++++|+|++. ...+.+..+++.++ ...|+++|+||
T Consensus 43 ~~~--~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~~~~d~ii~vv~~~~-~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 43 EYN--NKKFILVDTPGINDGESQDNDG-KEIRKFLEQISKSDLIIYVVDASN-PITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp EET--TEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHHCTESEEEEEEETTS-HSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred eec--eeeEEEEeCCCCcccchhhHHH-HHHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 111 2567899999998764432211 022234444599999999999877 55667788888887 78999999998
No 17
>PRK09866 hypothetical protein; Provisional
Probab=99.71 E-value=1.6e-16 Score=169.94 Aligned_cols=155 Identities=18% Similarity=0.249 Sum_probs=102.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCcc--c-------------------------
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTI--L------------------------- 148 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~--i------------------------- 148 (468)
++|+++|++|+|||||+|+|+|..+. ++|+.|+|...+++.++...+. +
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vl----pt~~~~~t~lpT~i~~~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~a 145 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVL----PNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIK 145 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccc----cCCCcccccccEEEEecCCcCceeeecCCccchHHHHHHhhHHHHHhhhh
Confidence 68999999999999999999999985 4667888888888877642211 0
Q ss_pred --------------------cCcc---------------------------cccCccccccccccccceeeeE--EeecC
Q psy13475 149 --------------------DGTQ---------------------------LAADWTFSGLQKFGQGLLDRLR--GLQLP 179 (468)
Q Consensus 149 --------------------~G~~---------------------------l~~D~~f~~L~~fg~tt~~~i~--~~~~~ 179 (468)
.|.+ +-.+.||..+..|-.-..-.+. ....+
T Consensus 146 tl~e~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~ 225 (741)
T PRK09866 146 HLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGL 225 (741)
T ss_pred HHHHHHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHHhhhhcCceeeeeeeecccc
Confidence 0100 0011233332222110000011 11112
Q ss_pred CCCCcceEEEeCCCCchhhhh-hhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCC--cEEEEEeC
Q psy13475 180 HPLLEKINIVEIPGILEIRKQ-VERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREY--QTRIILNK 256 (468)
Q Consensus 180 ~~~l~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~--~iiiVlNK 256 (468)
.....+++||||||++.+... +++. ....+.+||+|+||+|+.. ..+..+..+++.++..+. |+++|+||
T Consensus 226 l~~~~QIIFVDTPGIhk~~~~~L~k~------M~eqL~eADvVLFVVDat~-~~s~~DeeIlk~Lkk~~K~~PVILVVNK 298 (741)
T PRK09866 226 ESYPGQLTLLDTPGPNEAGQPHLQKM------LNQQLARASAVLAVLDYTQ-LKSISDEEVREAILAVGQSVPLYVLVNK 298 (741)
T ss_pred ccccCCEEEEECCCCCCccchHHHHH------HHHHHhhCCEEEEEEeCCC-CCChhHHHHHHHHHhcCCCCCEEEEEEc
Confidence 233478999999999976433 3333 3346999999999999987 457777888888887664 99999999
Q ss_pred CCCCC
Q psy13475 257 ADQVK 261 (468)
Q Consensus 257 ~D~v~ 261 (468)
+|..+
T Consensus 299 IDl~d 303 (741)
T PRK09866 299 FDQQD 303 (741)
T ss_pred ccCCC
Confidence 99975
No 18
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.71 E-value=3.5e-16 Score=160.79 Aligned_cols=198 Identities=20% Similarity=0.228 Sum_probs=115.6
Q ss_pred HHHHHHHHHhhhhcccCCCCC---cchhhHHHHhhcC--cch-hHHH-HHHHHHHHHHHHHHHHHHhhhcchhhhhhccc
Q psy13475 8 KKIAQRLQTQKQEDIEIPDNL---RDKRHVHGILKLD--EEF-KEEE-ELLAKTIETTLKELKRLYDNAIKPLEITYKYR 80 (468)
Q Consensus 8 ~~~~~~~q~~~~~~~~~~~~~---~~~~~ie~~l~~~--ee~-~~~d-~~~~~~~~~v~~~l~~ly~~~~~ple~~~~~~ 80 (468)
.+.+.-..+++|+.|+++++. +..+.+++.++|+ +|. .+.+ ..+...+..+.+.|+++-... +..-.
T Consensus 109 t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~----~~~r~-- 182 (351)
T TIGR03156 109 THEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIGTRGPGETQLETDRRLIRERIAQLKKELEKVEKQR----ERQRR-- 182 (351)
T ss_pred ChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHh--
Confidence 345666678999999999764 3467777778875 332 1221 122333444444444443221 11100
Q ss_pred cccCCCCCCccccCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcccc
Q psy13475 81 DLSNRHFADPEIFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFS 160 (468)
Q Consensus 81 ~~~s~~l~d~~~~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~ 160 (468)
.. .-...+.|+++|.+|||||||+|+|+|.+. .++..
T Consensus 183 ------~r--~~~~~~~ValvG~~NvGKSSLln~L~~~~~-~v~~~---------------------------------- 219 (351)
T TIGR03156 183 ------RR--KRADVPTVALVGYTNAGKSTLFNALTGADV-YAADQ---------------------------------- 219 (351)
T ss_pred ------hh--cccCCcEEEEECCCCCCHHHHHHHHhCCce-eeccC----------------------------------
Confidence 00 001236799999999999999999999874 22222
Q ss_pred ccccccccceeeeE-EeecCCCCCcceEEEeCCCCchh-hhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH--
Q psy13475 161 GLQKFGQGLLDRLR-GLQLPHPLLEKINIVEIPGILEI-RKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET-- 236 (468)
Q Consensus 161 ~L~~fg~tt~~~i~-~~~~~~~~l~~i~lIDTPGi~~~-~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~-- 236 (468)
+.+|++... .+.+++. ..+.|+||||+... ....-.. | ..+...+..||++++|+|++.....+..
T Consensus 220 -----~~tT~d~~~~~i~~~~~--~~i~l~DT~G~~~~l~~~lie~--f-~~tle~~~~ADlil~VvD~s~~~~~~~~~~ 289 (351)
T TIGR03156 220 -----LFATLDPTTRRLDLPDG--GEVLLTDTVGFIRDLPHELVAA--F-RATLEEVREADLLLHVVDASDPDREEQIEA 289 (351)
T ss_pred -----CccccCCEEEEEEeCCC--ceEEEEecCcccccCCHHHHHH--H-HHHHHHHHhCCEEEEEEECCCCchHHHHHH
Confidence 122222222 2333332 57999999998432 1121122 2 2345568899999999999873322222
Q ss_pred -HHHHHHHhcCCCcEEEEEeCCCCCChHH
Q psy13475 237 -EAILDQLKGREYQTRIILNKADQVKPEE 264 (468)
Q Consensus 237 -~~ll~~l~~~~~~iiiVlNK~D~v~~~e 264 (468)
..+++.+...+.|+++|+||+|+.+..+
T Consensus 290 ~~~~L~~l~~~~~piIlV~NK~Dl~~~~~ 318 (351)
T TIGR03156 290 VEKVLEELGAEDIPQLLVYNKIDLLDEPR 318 (351)
T ss_pred HHHHHHHhccCCCCEEEEEEeecCCChHh
Confidence 2344554444679999999999976543
No 19
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.68 E-value=5.1e-16 Score=138.99 Aligned_cols=130 Identities=28% Similarity=0.406 Sum_probs=91.1
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
++.|+++|.+|+|||||+|+|+|.+++.++.. ..++.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~---------------------------------------~~~~~~~~~ 43 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPK---------------------------------------PQTTRNRIR 43 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCC---------------------------------------CCceeceEE
Confidence 55799999999999999999999877543222 123333333
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIIL 254 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVl 254 (468)
+..... ...+.++||||+.+........ +.......+..+|++++|+|++.. .+.....++..+...+.|+++|+
T Consensus 44 ~~~~~~--~~~~~liDtpG~~~~~~~~~~~--~~~~~~~~~~~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~~~~~iiv~ 118 (168)
T cd04163 44 GIYTDD--DAQIIFVDTPGIHKPKKKLGER--MVKAAWSALKDVDLVLFVVDASEP-IGEGDEFILELLKKSKTPVILVL 118 (168)
T ss_pred EEEEcC--CeEEEEEECCCCCcchHHHHHH--HHHHHHHHHHhCCEEEEEEECCCc-cCchHHHHHHHHHHhCCCEEEEE
Confidence 333111 2568999999998765433222 445566778999999999999873 45556667777777678999999
Q ss_pred eCCCCC-ChHHHHHH
Q psy13475 255 NKADQV-KPEELMRV 268 (468)
Q Consensus 255 NK~D~v-~~~el~~v 268 (468)
||+|+. ..+++...
T Consensus 119 nK~Dl~~~~~~~~~~ 133 (168)
T cd04163 119 NKIDLVKDKEDLLPL 133 (168)
T ss_pred EchhccccHHHHHHH
Confidence 999998 34444333
No 20
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.65 E-value=4.2e-15 Score=156.89 Aligned_cols=151 Identities=21% Similarity=0.195 Sum_probs=101.6
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+|+|+|.+...++.. +++|++.+..
T Consensus 174 ~~v~ivG~~n~GKStlin~ll~~~~~~~~~~---------------------------------------~gtt~~~~~~ 214 (435)
T PRK00093 174 IKIAIIGRPNVGKSSLINALLGEERVIVSDI---------------------------------------AGTTRDSIDT 214 (435)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCceeecCC---------------------------------------CCceEEEEEE
Confidence 4599999999999999999999876554433 3455555433
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhh--hhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQV--ERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~--~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
..... ...+.+|||||+....... .+.| ....+..++..+|++++|+|+.. +.+..+..++..+...+.|+++|
T Consensus 215 ~~~~~--~~~~~lvDT~G~~~~~~~~~~~e~~-~~~~~~~~~~~ad~~ilViD~~~-~~~~~~~~i~~~~~~~~~~~ivv 290 (435)
T PRK00093 215 PFERD--GQKYTLIDTAGIRRKGKVTEGVEKY-SVIRTLKAIERADVVLLVIDATE-GITEQDLRIAGLALEAGRALVIV 290 (435)
T ss_pred EEEEC--CeeEEEEECCCCCCCcchhhHHHHH-HHHHHHHHHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCcEEEE
Confidence 33222 2579999999987543221 1111 22334556889999999999988 67888888888887778999999
Q ss_pred EeCCCCCChHHHHHHhhhhhhccccccCCCCCCeeccCC
Q psy13475 254 LNKADQVKPEELMRVQGTLIWNISPLMSSSEPPVMYSTS 292 (468)
Q Consensus 254 lNK~D~v~~~el~~v~~~l~~~ls~~~~~pe~p~vy~~s 292 (468)
+||+|+.+.+....+...+...+. ..+..|.++++.
T Consensus 291 ~NK~Dl~~~~~~~~~~~~~~~~l~---~~~~~~i~~~SA 326 (435)
T PRK00093 291 VNKWDLVDEKTMEEFKKELRRRLP---FLDYAPIVFISA 326 (435)
T ss_pred EECccCCCHHHHHHHHHHHHHhcc---cccCCCEEEEeC
Confidence 999999865443333222221121 123456666665
No 21
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.64 E-value=1.1e-15 Score=136.50 Aligned_cols=123 Identities=21% Similarity=0.275 Sum_probs=83.2
Q ss_pred EEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEeec
Q psy13475 99 LFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQL 178 (468)
Q Consensus 99 ~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~~ 178 (468)
+++|.+|+|||||+|+|++.....++.. +.++++.......
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~---------------------------------------~~~t~~~~~~~~~ 41 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDT---------------------------------------PGVTRDRIYGEAE 41 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCC---------------------------------------CCceeCceeEEEE
Confidence 4799999999999999999864322211 1222222221111
Q ss_pred CCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCC
Q psy13475 179 PHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKAD 258 (468)
Q Consensus 179 ~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D 258 (468)
.. ...+.+|||||+.+........ +...+...+..+|++++|+|+.. ..+.....+.+.++..+.|+++|+||+|
T Consensus 42 ~~--~~~~~i~DtpG~~~~~~~~~~~--~~~~~~~~~~~~d~ii~v~d~~~-~~~~~~~~~~~~~~~~~~piiiv~nK~D 116 (157)
T cd01894 42 WG--GREFILIDTGGIEPDDEGISKE--IREQAELAIEEADVILFVVDGRE-GLTPADEEIAKYLRKSKKPVILVVNKVD 116 (157)
T ss_pred EC--CeEEEEEECCCCCCchhHHHHH--HHHHHHHHHHhCCEEEEEEeccc-cCCccHHHHHHHHHhcCCCEEEEEECcc
Confidence 11 2569999999998754322222 33445566889999999999976 4455555677777777799999999999
Q ss_pred CCChHHH
Q psy13475 259 QVKPEEL 265 (468)
Q Consensus 259 ~v~~~el 265 (468)
+......
T Consensus 117 ~~~~~~~ 123 (157)
T cd01894 117 NIKEEDE 123 (157)
T ss_pred cCChHHH
Confidence 9865543
No 22
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=6.2e-15 Score=137.90 Aligned_cols=127 Identities=22% Similarity=0.361 Sum_probs=89.7
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCc-ccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNE-YSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~-~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
..|-|+++|++|||||||||+|+|++ .+.+|.. | |.|-.-.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSkt----P----------------------------------GrTq~iN 64 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKT----P----------------------------------GRTQLIN 64 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCC----C----------------------------------CccceeE
Confidence 56789999999999999999999976 4544433 2 3332111
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhh--hhhhhccchhHHHHHhhc---ccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIR--KQVERQFPFNDACQWFID---RADIIFLVYDPSKLDVGPETEAILDQLKGRE 247 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~--~~~~r~~d~~~~~~~~~~---~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~ 247 (468)
...+. ..+.|||.||++=.. +...+. +.+.+..+++ +..++++++|+.. .+.+.+.++++.+...+
T Consensus 65 --ff~~~----~~~~lVDlPGYGyAkv~k~~~e~--w~~~i~~YL~~R~~L~~vvlliD~r~-~~~~~D~em~~~l~~~~ 135 (200)
T COG0218 65 --FFEVD----DELRLVDLPGYGYAKVPKEVKEK--WKKLIEEYLEKRANLKGVVLLIDARH-PPKDLDREMIEFLLELG 135 (200)
T ss_pred --EEEec----CcEEEEeCCCcccccCCHHHHHH--HHHHHHHHHhhchhheEEEEEEECCC-CCcHHHHHHHHHHHHcC
Confidence 11211 238999999997432 222222 4444555543 3457889999988 67888999999999999
Q ss_pred CcEEEEEeCCCCCChHHHHH
Q psy13475 248 YQTRIILNKADQVKPEELMR 267 (468)
Q Consensus 248 ~~iiiVlNK~D~v~~~el~~ 267 (468)
.|+++|+||+|.+...+..+
T Consensus 136 i~~~vv~tK~DKi~~~~~~k 155 (200)
T COG0218 136 IPVIVVLTKADKLKKSERNK 155 (200)
T ss_pred CCeEEEEEccccCChhHHHH
Confidence 99999999999998655433
No 23
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.63 E-value=1.9e-15 Score=159.06 Aligned_cols=122 Identities=25% Similarity=0.260 Sum_probs=92.4
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|++|||||||+|+|+|...++++.. +++|++...+..
T Consensus 2 i~ivG~~nvGKStL~n~l~~~~~~~v~~~---------------------------------------~g~t~d~~~~~~ 42 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLTGKRDAIVSDT---------------------------------------PGVTRDRKYGDA 42 (429)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcceecCC---------------------------------------CCcccCceEEEE
Confidence 89999999999999999999886654433 345555444332
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCC
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKA 257 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~ 257 (468)
... ...+.+|||||+......++.. +...+..++..+|++++|+|+.. +++..+..+.+.+++.+.|+++|+||+
T Consensus 43 ~~~--~~~~~liDTpG~~~~~~~~~~~--~~~~~~~~~~~ad~vl~vvD~~~-~~~~~d~~i~~~l~~~~~piilVvNK~ 117 (429)
T TIGR03594 43 EWG--GREFILIDTGGIEEDDDGLDKQ--IREQAEIAIEEADVILFVVDGRE-GLTPEDEEIAKWLRKSGKPVILVANKI 117 (429)
T ss_pred EEC--CeEEEEEECCCCCCcchhHHHH--HHHHHHHHHhhCCEEEEEEeCCC-CCCHHHHHHHHHHHHhCCCEEEEEECc
Confidence 112 2569999999986543333333 55667778899999999999987 678888888888888889999999999
Q ss_pred CCCChH
Q psy13475 258 DQVKPE 263 (468)
Q Consensus 258 D~v~~~ 263 (468)
|..+.+
T Consensus 118 D~~~~~ 123 (429)
T TIGR03594 118 DGKKED 123 (429)
T ss_pred cCCccc
Confidence 987543
No 24
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.62 E-value=1.2e-14 Score=162.34 Aligned_cols=124 Identities=18% Similarity=0.149 Sum_probs=93.8
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
.+.|+|+|.+|||||||+|+|+|...++++.. +++|++++.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~---------------------------------------pGvT~d~~~ 315 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDT---------------------------------------PGVTRDRVS 315 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCC---------------------------------------CCeeEEEEE
Confidence 45699999999999999999999877654433 345556555
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIIL 254 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVl 254 (468)
....... ..+.+|||||+......++.. +...+..++..||++++|+|++. +++..+..+++.++..+.|+++|+
T Consensus 316 ~~~~~~~--~~~~liDT~G~~~~~~~~~~~--~~~~~~~~~~~aD~iL~VvDa~~-~~~~~d~~i~~~Lr~~~~pvIlV~ 390 (712)
T PRK09518 316 YDAEWAG--TDFKLVDTGGWEADVEGIDSA--IASQAQIAVSLADAVVFVVDGQV-GLTSTDERIVRMLRRAGKPVVLAV 390 (712)
T ss_pred EEEEECC--EEEEEEeCCCcCCCCccHHHH--HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4332222 579999999987432223333 55667778899999999999987 667777788888888889999999
Q ss_pred eCCCCCCh
Q psy13475 255 NKADQVKP 262 (468)
Q Consensus 255 NK~D~v~~ 262 (468)
||+|+...
T Consensus 391 NK~D~~~~ 398 (712)
T PRK09518 391 NKIDDQAS 398 (712)
T ss_pred ECcccccc
Confidence 99998653
No 25
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.61 E-value=4e-15 Score=158.88 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=91.7
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
..|.|+|+|.+|||||||+|+|+|...+.++.. +++|++.+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~---------------------------------------~gvT~d~~ 77 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDV---------------------------------------PGVTRDRV 77 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCC---------------------------------------CCCCEeeE
Confidence 447899999999999999999999876554433 34455554
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
........ ..+.||||||+......+... +...+..++..||++|+|+|++. ..+..+..+.+.++..+.|+++|
T Consensus 78 ~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~--~~~~~~~~~~~aD~il~VvD~~~-~~s~~~~~i~~~l~~~~~piilV 152 (472)
T PRK03003 78 SYDAEWNG--RRFTVVDTGGWEPDAKGLQAS--VAEQAEVAMRTADAVLFVVDATV-GATATDEAVARVLRRSGKPVILA 152 (472)
T ss_pred EEEEEECC--cEEEEEeCCCcCCcchhHHHH--HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEE
Confidence 44332222 568999999986432223333 45566777899999999999987 56666777888888778999999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+..
T Consensus 153 ~NK~Dl~~ 160 (472)
T PRK03003 153 ANKVDDER 160 (472)
T ss_pred EECccCCc
Confidence 99999864
No 26
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.61 E-value=1.3e-14 Score=155.02 Aligned_cols=125 Identities=20% Similarity=0.203 Sum_probs=87.8
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
.+.|+++|.+|+|||||+|+|+|.+...++.. +++|++.+.
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~---------------------------------------~gtT~d~~~ 251 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDV---------------------------------------AGTTVDPVD 251 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCC---------------------------------------CCccCCcce
Confidence 45699999999999999999999887554433 234444333
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhh-h-hhccchhH-HHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQ-V-ERQFPFND-ACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTR 251 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~-~-~r~~d~~~-~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ii 251 (468)
...... ...+.||||||+...... . ... +.. .+..++.+||++++|+|++. ..+.....++..+...+.|++
T Consensus 252 ~~~~~~--~~~~~l~DTaG~~~~~~~~~~~e~--~~~~~~~~~i~~ad~vilV~Da~~-~~s~~~~~~~~~~~~~~~piI 326 (472)
T PRK03003 252 SLIELG--GKTWRFVDTAGLRRRVKQASGHEY--YASLRTHAAIEAAEVAVVLIDASE-PISEQDQRVLSMVIEAGRALV 326 (472)
T ss_pred EEEEEC--CEEEEEEECCCccccccccchHHH--HHHHHHHHHHhcCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEE
Confidence 222112 256889999998542211 0 111 111 23456789999999999988 677777788888777789999
Q ss_pred EEEeCCCCCChH
Q psy13475 252 IILNKADQVKPE 263 (468)
Q Consensus 252 iVlNK~D~v~~~ 263 (468)
+|+||+|+.+.+
T Consensus 327 iV~NK~Dl~~~~ 338 (472)
T PRK03003 327 LAFNKWDLVDED 338 (472)
T ss_pred EEEECcccCChh
Confidence 999999998643
No 27
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.60 E-value=2.4e-14 Score=150.77 Aligned_cols=129 Identities=21% Similarity=0.172 Sum_probs=90.2
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+|+|+|.+...++.. ++||++.+..
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~---------------------------------------~gtt~~~~~~ 213 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDI---------------------------------------AGTTRDSIDI 213 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeecCCC---------------------------------------CCceECcEeE
Confidence 3599999999999999999999876543332 2344443332
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhh--hhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQV--ERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~--~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
...... ..+.+|||||+....... .+.| ....+..++..+|++++|+|+.. +++..+..++..+...+.|+++|
T Consensus 214 ~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~-~~~~~~~~~~~ad~~ilV~D~~~-~~~~~~~~~~~~~~~~~~~iiiv 289 (429)
T TIGR03594 214 PFERNG--KKYLLIDTAGIRRKGKVTEGVEKY-SVLRTLKAIERADVVLLVLDATE-GITEQDLRIAGLILEAGKALVIV 289 (429)
T ss_pred EEEECC--cEEEEEECCCccccccchhhHHHH-HHHHHHHHHHhCCEEEEEEECCC-CccHHHHHHHHHHHHcCCcEEEE
Confidence 221122 479999999987543211 1111 12334556899999999999987 67888888888887778999999
Q ss_pred EeCCCCC-ChHHHHH
Q psy13475 254 LNKADQV-KPEELMR 267 (468)
Q Consensus 254 lNK~D~v-~~~el~~ 267 (468)
+||+|++ +.+....
T Consensus 290 ~NK~Dl~~~~~~~~~ 304 (429)
T TIGR03594 290 VNKWDLVKDEKTREE 304 (429)
T ss_pred EECcccCCCHHHHHH
Confidence 9999998 4433333
No 28
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.60 E-value=2.9e-14 Score=129.00 Aligned_cols=124 Identities=23% Similarity=0.191 Sum_probs=80.5
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+|+|++......+.. | .+++.....
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~----~-----------------------------------~~~~~~~~~ 43 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDI----A-----------------------------------GTTRDSIDV 43 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCC----C-----------------------------------CCccCceee
Confidence 3599999999999999999999865432211 1 122222111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhh--hhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQ--VERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~--~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
..... ...+.+|||||+.+.... ..+.+.. ......+..+|++++|+|+.. ..+.....++..+...+.|+++|
T Consensus 44 ~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~-~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~~~iiv 119 (174)
T cd01895 44 PFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSV-LRTLKAIERADVVLLVIDATE-GITEQDLRIAGLILEEGKALVIV 119 (174)
T ss_pred EEEEC--CeeEEEEECCCCccccchhccHHHHHH-HHHHHHHhhcCeEEEEEeCCC-CcchhHHHHHHHHHhcCCCEEEE
Confidence 11111 245899999998754211 0011101 122345679999999999987 55666666677666667899999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 120 ~nK~Dl~~~ 128 (174)
T cd01895 120 VNKWDLVEK 128 (174)
T ss_pred EeccccCCc
Confidence 999999865
No 29
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.59 E-value=1.9e-14 Score=128.30 Aligned_cols=122 Identities=23% Similarity=0.263 Sum_probs=80.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|++|+|||||+|+|++...+.++. .|+ ++.+.....
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~----~~~-----------------------------------~~~~~~~~~ 43 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSD----IAG-----------------------------------TTRDVIEES 43 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccC----CCC-----------------------------------CccceEEEE
Confidence 48999999999999999999987643222 221 211111111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
.... ...++++||||+.+......+. ........+.++|++++|+|++. ..+.....++.. ....|+++|+||
T Consensus 44 ~~~~--~~~~~i~DtpG~~~~~~~~~~~--~~~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~--~~~~~vi~v~nK 116 (157)
T cd04164 44 IDIG--GIPVRLIDTAGIRETEDEIEKI--GIERAREAIEEADLVLFVIDASR-GLDEEDLEILEL--PADKPIIVVLNK 116 (157)
T ss_pred EEeC--CEEEEEEECCCcCCCcchHHHH--HHHHHHHHHhhCCEEEEEEECCC-CCCHHHHHHHHh--hcCCCEEEEEEc
Confidence 1111 2468999999987654332221 22345566789999999999986 345555555444 346899999999
Q ss_pred CCCCChHH
Q psy13475 257 ADQVKPEE 264 (468)
Q Consensus 257 ~D~v~~~e 264 (468)
+|+.+...
T Consensus 117 ~D~~~~~~ 124 (157)
T cd04164 117 SDLLPDSE 124 (157)
T ss_pred hhcCCccc
Confidence 99986544
No 30
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.59 E-value=2.6e-14 Score=132.71 Aligned_cols=127 Identities=22% Similarity=0.291 Sum_probs=83.3
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCc-ccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNE-YSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~-~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
+.+.|+++|.+|+|||||+|+|++.. .+.++.. .++|.+.
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~---------------------------------------~~~t~~~ 57 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKT---------------------------------------PGRTQLI 57 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC---------------------------------------CCcceEE
Confidence 56679999999999999999999986 3322211 1222221
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhc---ccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFID---RADIIFLVYDPSKLDVGPETEAILDQLKGREYQ 249 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~---~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ 249 (468)
.. ... + .++.||||||+...........++......++. .+|++++|+|++. +++.....+++.+...+.|
T Consensus 58 ~~-~~~--~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~-~~~~~~~~~~~~~~~~~~p 131 (179)
T TIGR03598 58 NF-FEV--N--DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRH-PLKELDLEMLEWLRERGIP 131 (179)
T ss_pred EE-EEe--C--CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCC-CCCHHHHHHHHHHHHcCCC
Confidence 11 111 1 369999999986432110100113333333433 4689999999987 5777777777777777889
Q ss_pred EEEEEeCCCCCChHHH
Q psy13475 250 TRIILNKADQVKPEEL 265 (468)
Q Consensus 250 iiiVlNK~D~v~~~el 265 (468)
+++|+||+|+.+..+.
T Consensus 132 viiv~nK~D~~~~~~~ 147 (179)
T TIGR03598 132 VLIVLTKADKLKKSEL 147 (179)
T ss_pred EEEEEECcccCCHHHH
Confidence 9999999999865543
No 31
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.59 E-value=2.6e-14 Score=139.24 Aligned_cols=160 Identities=19% Similarity=0.314 Sum_probs=107.2
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCcc------ccCcccccCccccccccc-
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTI------LDGTQLAADWTFSGLQKF- 165 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~------i~G~~l~~D~~f~~L~~f- 165 (468)
...|.|+++|+.|+||||+||+|+|..+.+ .|....|.+.+.+........ .++... ..|+.+...
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~----~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~---~~~~~v~~~i 96 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLP----RGSGIVTRRPLILQLINSSTEYAEFLHCKGKKF---TDFDEVRNEI 96 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccc----cCCCcccccceEEEccCCCCcceEEEecCCccc---CCHHHHHHHH
Confidence 367899999999999999999999987542 455667777776644322111 111110 022222211
Q ss_pred ----------cccceeeeEEeecCCCCCcceEEEeCCCCchhh-----hhhhhccchhHHHHHhhc-ccCEEEEEEcCCC
Q psy13475 166 ----------GQGLLDRLRGLQLPHPLLEKINIVEIPGILEIR-----KQVERQFPFNDACQWFID-RADIIFLVYDPSK 229 (468)
Q Consensus 166 ----------g~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~-----~~~~r~~d~~~~~~~~~~-~aDlIllV~Da~~ 229 (468)
+..+.+....+.+..|...+++||||||+.... ...... +.+.+..+++ ..++|++|+|+..
T Consensus 97 ~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~--i~~lv~~yi~~~~~IIL~Vvda~~ 174 (240)
T smart00053 97 EAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQ--IKDMIKQFISKEECLILAVTPANV 174 (240)
T ss_pred HHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHH--HHHHHHHHHhCccCeEEEEEECCC
Confidence 223444444555556777899999999997431 112222 4566777887 5569999999976
Q ss_pred CCCCHhH-HHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 230 LDVGPET-EAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 230 ~~i~~e~-~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
++...+ .++.+.+...+.++++|+||+|..++
T Consensus 175 -d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 175 -DLANSDALKLAKEVDPQGERTIGVITKLDLMDE 207 (240)
T ss_pred -CCCchhHHHHHHHHHHcCCcEEEEEECCCCCCc
Confidence 666655 58888888888999999999999864
No 32
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=1.3e-14 Score=153.06 Aligned_cols=122 Identities=23% Similarity=0.284 Sum_probs=88.7
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
+.|+++|.+|||||||+|+|+|...+.++.. +++|++...+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~---------------------------------------~~~t~d~~~~ 42 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADT---------------------------------------PGVTRDRIYG 42 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCC---------------------------------------CCCcccceEE
Confidence 5799999999999999999999887654433 2344443333
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEe
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILN 255 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlN 255 (468)
...... ..+.+|||||+.......... +...+..++..+|++++|+|+.. +.+..+..+.+.++..+.|+++|+|
T Consensus 43 ~~~~~~--~~~~liDT~G~~~~~~~~~~~--~~~~~~~~~~~ad~il~vvd~~~-~~~~~~~~~~~~l~~~~~piilv~N 117 (435)
T PRK00093 43 EAEWLG--REFILIDTGGIEPDDDGFEKQ--IREQAELAIEEADVILFVVDGRA-GLTPADEEIAKILRKSNKPVILVVN 117 (435)
T ss_pred EEEECC--cEEEEEECCCCCCcchhHHHH--HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCcEEEEEE
Confidence 221122 579999999998632212222 34456667899999999999987 5677777777888877899999999
Q ss_pred CCCCCC
Q psy13475 256 KADQVK 261 (468)
Q Consensus 256 K~D~v~ 261 (468)
|+|..+
T Consensus 118 K~D~~~ 123 (435)
T PRK00093 118 KVDGPD 123 (435)
T ss_pred CccCcc
Confidence 999764
No 33
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.58 E-value=1.7e-14 Score=130.84 Aligned_cols=115 Identities=18% Similarity=0.201 Sum_probs=77.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee-eE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR-LR 174 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~-i~ 174 (468)
|.|+|+|.+|+|||||+|+|.+..+...... .++.+. ..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~----------------------------------------~~t~~~~~~ 40 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAG----------------------------------------GITQHIGAF 40 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCC----------------------------------------CeEEeeccE
Confidence 6799999999999999999998766421100 111110 11
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIIL 254 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVl 254 (468)
...........+.+|||||.... ......++..+|++++|+|++. ....+....+..+...+.|+++|+
T Consensus 41 ~~~~~~~~~~~~~iiDtpG~~~~----------~~~~~~~~~~~d~il~v~d~~~-~~~~~~~~~~~~~~~~~~p~ivv~ 109 (168)
T cd01887 41 EVPAEVLKIPGITFIDTPGHEAF----------TNMRARGASLTDIAILVVAADD-GVMPQTIEAIKLAKAANVPFIVAL 109 (168)
T ss_pred EEecccCCcceEEEEeCCCcHHH----------HHHHHHHHhhcCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEE
Confidence 11111112367999999997542 1223344678999999999987 345555566666666778999999
Q ss_pred eCCCCCC
Q psy13475 255 NKADQVK 261 (468)
Q Consensus 255 NK~D~v~ 261 (468)
||+|+..
T Consensus 110 NK~Dl~~ 116 (168)
T cd01887 110 NKIDKPN 116 (168)
T ss_pred Eceeccc
Confidence 9999874
No 34
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.58 E-value=1.4e-14 Score=131.96 Aligned_cols=124 Identities=23% Similarity=0.255 Sum_probs=74.9
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|.+|+|||||+|+|.+.+. .++.. | .++.+...+..
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~~-~v~~~----~-----------------------------------~~t~~~~~~~~ 42 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAKP-KIADY----P-----------------------------------FTTLVPNLGVV 42 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCCc-cccCC----C-----------------------------------ccccCCcceEE
Confidence 89999999999999999998654 22211 1 11111111111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCC-CCCHhHHHHHHHHhc-----CCCcEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKL-DVGPETEAILDQLKG-----REYQTR 251 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~-~i~~e~~~ll~~l~~-----~~~~ii 251 (468)
.... ...+.|+||||+.+..... +. +.....+.+..+|++++|+|++.. ...+....+++.+.. ...|++
T Consensus 43 ~~~~-~~~~~l~DtpG~~~~~~~~-~~--~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~i 118 (170)
T cd01898 43 RVDD-GRSFVVADIPGLIEGASEG-KG--LGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRI 118 (170)
T ss_pred EcCC-CCeEEEEecCcccCccccc-CC--chHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccE
Confidence 1111 1479999999986432111 11 223334446689999999999863 122333444444432 247899
Q ss_pred EEEeCCCCCChHHH
Q psy13475 252 IILNKADQVKPEEL 265 (468)
Q Consensus 252 iVlNK~D~v~~~el 265 (468)
+|+||+|+.+....
T Consensus 119 vv~NK~Dl~~~~~~ 132 (170)
T cd01898 119 VVLNKIDLLDEEEL 132 (170)
T ss_pred EEEEchhcCCchhh
Confidence 99999998765443
No 35
>PRK11058 GTPase HflX; Provisional
Probab=99.58 E-value=5e-14 Score=148.24 Aligned_cols=123 Identities=18% Similarity=0.288 Sum_probs=79.3
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
.|.|+++|.+|||||||+|+|+|.++. ++.. +.+|++...
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~---------------------------------------~~tTld~~~ 236 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY-AADQ---------------------------------------LFATLDPTL 236 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee-eccC---------------------------------------CCCCcCCce
Confidence 368999999999999999999998765 2222 122222222
Q ss_pred -EeecCCCCCcceEEEeCCCCchh-hhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH---HHHHHHHhcCCCc
Q psy13475 175 -GLQLPHPLLEKINIVEIPGILEI-RKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET---EAILDQLKGREYQ 249 (468)
Q Consensus 175 -~~~~~~~~l~~i~lIDTPGi~~~-~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~---~~ll~~l~~~~~~ 249 (468)
.+.++. ...+.|+||||+... ....-+. |. .+...+..||++++|+|++........ ..++..+...+.|
T Consensus 237 ~~i~l~~--~~~~~l~DTaG~~r~lp~~lve~--f~-~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p 311 (426)
T PRK11058 237 RRIDVAD--VGETVLADTVGFIRHLPHDLVAA--FK-ATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP 311 (426)
T ss_pred EEEEeCC--CCeEEEEecCcccccCCHHHHHH--HH-HHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC
Confidence 222222 236899999998432 1111122 32 244557899999999999873222222 2445555555689
Q ss_pred EEEEEeCCCCCCh
Q psy13475 250 TRIILNKADQVKP 262 (468)
Q Consensus 250 iiiVlNK~D~v~~ 262 (468)
+++|+||+|+.+.
T Consensus 312 vIiV~NKiDL~~~ 324 (426)
T PRK11058 312 TLLVMNKIDMLDD 324 (426)
T ss_pred EEEEEEcccCCCc
Confidence 9999999998753
No 36
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.57 E-value=1.3e-14 Score=137.06 Aligned_cols=126 Identities=17% Similarity=0.242 Sum_probs=84.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE-
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG- 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~- 175 (468)
.|+++|++|+|||||+|+|+|.+...++.. ..++ |......
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~--~~~~------------------------------------T~~~~~~~ 43 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLS--ASSV------------------------------------TKTCQKES 43 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccC--CCCc------------------------------------ccccceee
Confidence 489999999999999999999987543221 1111 1111111
Q ss_pred eecCCCCCcceEEEeCCCCchhhh---hhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC-----C
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRK---QVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR-----E 247 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~---~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~-----~ 247 (468)
... ...++++|||||+.+... .+.+. +...+......+|+||+|+++.. ++.++..+++.++.. .
T Consensus 44 ~~~---~~~~i~viDTPG~~d~~~~~~~~~~~--i~~~~~~~~~g~~~illVi~~~~--~t~~d~~~l~~l~~~fg~~~~ 116 (196)
T cd01852 44 AVW---DGRRVNVIDTPGLFDTSVSPEQLSKE--IVRCLSLSAPGPHAFLLVVPLGR--FTEEEEQAVETLQELFGEKVL 116 (196)
T ss_pred EEE---CCeEEEEEECcCCCCccCChHHHHHH--HHHHHHhcCCCCEEEEEEEECCC--cCHHHHHHHHHHHHHhChHhH
Confidence 111 225799999999997642 12222 33334444678999999999986 578888888877653 2
Q ss_pred CcEEEEEeCCCCCChHHHHH
Q psy13475 248 YQTRIILNKADQVKPEELMR 267 (468)
Q Consensus 248 ~~iiiVlNK~D~v~~~el~~ 267 (468)
.++++|+|++|.+..+.+..
T Consensus 117 ~~~ivv~T~~d~l~~~~~~~ 136 (196)
T cd01852 117 DHTIVLFTRGDDLEGGTLED 136 (196)
T ss_pred hcEEEEEECccccCCCcHHH
Confidence 58899999999886554443
No 37
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.56 E-value=6.6e-14 Score=156.43 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=89.5
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
.+.|+++|.+|||||||+|+|++.+...++.. ++||++.+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~---------------------------------------~gtT~d~~~ 490 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDL---------------------------------------AGTTRDPVD 490 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCC---------------------------------------CCCCcCcce
Confidence 46799999999999999999999987554433 344444443
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhh-h-hccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQV-E-RQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRI 252 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~-~-r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iii 252 (468)
...... ...+.||||||+....... . +.| -.-.+..++..+|++++|+|++. +.+.+...++..+...+.|+++
T Consensus 491 ~~~~~~--~~~~~liDTaG~~~~~~~~~~~e~~-~~~r~~~~i~~advvilViDat~-~~s~~~~~i~~~~~~~~~piIi 566 (712)
T PRK09518 491 EIVEID--GEDWLFIDTAGIKRRQHKLTGAEYY-SSLRTQAAIERSELALFLFDASQ-PISEQDLKVMSMAVDAGRALVL 566 (712)
T ss_pred eEEEEC--CCEEEEEECCCcccCcccchhHHHH-HHHHHHHHhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEE
Confidence 322112 2568899999986432221 1 111 11124456789999999999987 6777777788777777889999
Q ss_pred EEeCCCCCChH
Q psy13475 253 ILNKADQVKPE 263 (468)
Q Consensus 253 VlNK~D~v~~~ 263 (468)
|+||+|+.+..
T Consensus 567 V~NK~DL~~~~ 577 (712)
T PRK09518 567 VFNKWDLMDEF 577 (712)
T ss_pred EEEchhcCChh
Confidence 99999998643
No 38
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.56 E-value=3.9e-14 Score=130.63 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=81.5
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcccccccccccccee-eeEEe
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLD-RLRGL 176 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~-~i~~~ 176 (468)
|+|+|.+|+|||||+|+|++......... ..++ .+...... ..-.+.+.. .....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~---~~~~-~~~~~~~~--------------------~~~~~~~~~~~~~~~ 57 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDG---TVEE-TFLDVLKE--------------------ERERGITIKSGVATF 57 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCC---ceec-ccccCCHH--------------------HHHcCCCeecceEEE
Confidence 89999999999999999999876531111 1111 00000000 000111111 11111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
.. ....++||||||..+. ......++..+|++++|+|++. .........+..+...+.|+++|+||
T Consensus 58 ~~---~~~~~~liDtpG~~~~----------~~~~~~~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~i~iv~nK 123 (189)
T cd00881 58 EW---PDRRVNFIDTPGHEDF----------SSEVIRGLSVSDGAILVVDANE-GVQPQTREHLRIAREGGLPIIVAINK 123 (189)
T ss_pred ee---CCEEEEEEeCCCcHHH----------HHHHHHHHHhcCEEEEEEECCC-CCcHHHHHHHHHHHHCCCCeEEEEEC
Confidence 11 1357999999997642 2334555779999999999987 45666667777776677899999999
Q ss_pred CCCCChHHH
Q psy13475 257 ADQVKPEEL 265 (468)
Q Consensus 257 ~D~v~~~el 265 (468)
+|+..++++
T Consensus 124 ~D~~~~~~~ 132 (189)
T cd00881 124 IDRVGEEDL 132 (189)
T ss_pred CCCcchhcH
Confidence 999875443
No 39
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.56 E-value=2.3e-14 Score=135.53 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=76.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|+|..... .|..++. . ..++... ...
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~----~~~~~~~-~------------------------------~~~t~~~-~~~ 46 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEE----EGAAPTG-V------------------------------VETTMKR-TPY 46 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC----CCccccC-c------------------------------cccccCc-eee
Confidence 48999999999999999999975532 1111110 0 0111111 011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
. .+...+++++||||+.+.....+ .| + ....+..+|++++|.+. +++..+..+++.++..+.|+++|+||
T Consensus 47 ~--~~~~~~l~l~DtpG~~~~~~~~~-~~-l---~~~~~~~~d~~l~v~~~---~~~~~d~~~~~~l~~~~~~~ilV~nK 116 (197)
T cd04104 47 P--HPKFPNVTLWDLPGIGSTAFPPD-DY-L---EEMKFSEYDFFIIISST---RFSSNDVKLAKAIQCMGKKFYFVRTK 116 (197)
T ss_pred e--cCCCCCceEEeCCCCCcccCCHH-HH-H---HHhCccCcCEEEEEeCC---CCCHHHHHHHHHHHHhCCCEEEEEec
Confidence 1 12245799999999986432211 11 1 11225688999998654 35777778888888888899999999
Q ss_pred CCCCC
Q psy13475 257 ADQVK 261 (468)
Q Consensus 257 ~D~v~ 261 (468)
+|+..
T Consensus 117 ~D~~~ 121 (197)
T cd04104 117 VDRDL 121 (197)
T ss_pred ccchh
Confidence 99964
No 40
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.55 E-value=7e-14 Score=125.98 Aligned_cols=117 Identities=21% Similarity=0.268 Sum_probs=72.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee-EE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL-RG 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i-~~ 175 (468)
.|+++|.+|+|||||+|+|.|......... .. +.++.+.. ..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~--~~-----------------------------------~~~t~~~~~~~ 44 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEE--KK-----------------------------------RGITIDLGFAY 44 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhh--hc-----------------------------------cCceEEeeeEE
Confidence 589999999999999999998643211100 00 01111111 11
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCC-cEEEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREY-QTRIIL 254 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~-~iiiVl 254 (468)
..... ...+.+|||||... +......++..+|++++|+|++. +...+....+..+...+. |+++|+
T Consensus 45 ~~~~~--~~~~~~~DtpG~~~----------~~~~~~~~~~~ad~ii~V~d~~~-~~~~~~~~~~~~~~~~~~~~~ilv~ 111 (164)
T cd04171 45 LDLPS--GKRLGFIDVPGHEK----------FIKNMLAGAGGIDLVLLVVAADE-GIMPQTREHLEILELLGIKRGLVVL 111 (164)
T ss_pred EEecC--CcEEEEEECCChHH----------HHHHHHhhhhcCCEEEEEEECCC-CccHhHHHHHHHHHHhCCCcEEEEE
Confidence 11111 25799999999743 22334455789999999999976 333444444444433344 899999
Q ss_pred eCCCCCChH
Q psy13475 255 NKADQVKPE 263 (468)
Q Consensus 255 NK~D~v~~~ 263 (468)
||+|+....
T Consensus 112 NK~Dl~~~~ 120 (164)
T cd04171 112 TKADLVDED 120 (164)
T ss_pred ECccccCHH
Confidence 999997653
No 41
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.54 E-value=2.7e-14 Score=146.50 Aligned_cols=191 Identities=21% Similarity=0.268 Sum_probs=99.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCccc-ccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYS-QNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~-~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
-|+|+|.+|+|||||||+|.|-... ..+.++|+..|| .+.
T Consensus 37 ~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT------------------------------------~~~--- 77 (376)
T PF05049_consen 37 NIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETT------------------------------------MEP--- 77 (376)
T ss_dssp EEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCC------------------------------------TS----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCC------------------------------------CCC---
Confidence 3999999999999999999874321 011233332222 221
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEe
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILN 255 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlN 255 (468)
..+++|...++++||.||+..+.-..+.. +. ..-+.+.|.+|++.+. .++..+..+.+.++..++|+.+|.|
T Consensus 78 ~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Y--l~---~~~~~~yD~fiii~s~---rf~~ndv~La~~i~~~gK~fyfVRT 149 (376)
T PF05049_consen 78 TPYPHPKFPNVTLWDLPGIGTPNFPPEEY--LK---EVKFYRYDFFIIISSE---RFTENDVQLAKEIQRMGKKFYFVRT 149 (376)
T ss_dssp EEEE-SS-TTEEEEEE--GGGSS--HHHH--HH---HTTGGG-SEEEEEESS---S--HHHHHHHHHHHHTT-EEEEEE-
T ss_pred eeCCCCCCCCCeEEeCCCCCCCCCCHHHH--HH---HccccccCEEEEEeCC---CCchhhHHHHHHHHHcCCcEEEEEe
Confidence 22335666789999999998764333332 11 1126788988877654 3478888999999999999999999
Q ss_pred CCCC------------CChHHH-HHHhhhhhhccccccCCCCCCeeccCCCCCCCCCCCc--hHHHHHHH-----HHHHH
Q psy13475 256 KADQ------------VKPEEL-MRVQGTLIWNISPLMSSSEPPVMYSTSLWSNPYEVGA--PIRLLQAQ-----EHAFL 315 (468)
Q Consensus 256 K~D~------------v~~~el-~~v~~~l~~~ls~~~~~pe~p~vy~~s~w~~p~~~~~--~~~~~~~e-----e~~l~ 315 (468)
|+|. .+.+++ .++...-..++.+ .|.++ |+||.-|-|+-. .-|- ....+..+ +..++
T Consensus 150 KvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k-~gv~~-P~VFLVS~~dl~-~yDFp~L~~tL~~dLp~~Kr~~fl 226 (376)
T PF05049_consen 150 KVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK-AGVSE-PQVFLVSSFDLS-KYDFPKLEETLEKDLPAHKRHAFL 226 (376)
T ss_dssp -HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC-TT-SS---EEEB-TTTTT-STTHHHHHHHHHHHS-GGGHHHHH
T ss_pred cccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH-cCCCc-CceEEEeCCCcc-cCChHHHHHHHHHHhHHHHHHHHH
Confidence 9995 122232 2333333444443 34344 555544434321 1111 11222222 34444
Q ss_pred HHHHH----HHHHHHHHHHHHhhhcc
Q psy13475 316 RDLRN----AIDKRVENKIASARRFA 337 (468)
Q Consensus 316 ~eL~~----~~~~~i~~~~~~~~~~~ 337 (468)
.-|++ ++.++.+.+.+++|..|
T Consensus 227 lsLp~is~~~I~kKk~~lk~~Iw~~A 252 (376)
T PF05049_consen 227 LSLPNISEAAIEKKKESLKQKIWLEA 252 (376)
T ss_dssp HHS---SHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44543 77777777777777643
No 42
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.54 E-value=7.2e-14 Score=132.35 Aligned_cols=131 Identities=18% Similarity=0.113 Sum_probs=84.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|+.++|||||+++|++... ..|.... ....... +...++..+.+.+.....
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~-----~~g~~~~-~~~~~~d------------------~~~~E~~rg~Ti~~~~~~ 59 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLA-----KKGGAKF-KKYDEID------------------KAPEEKARGITINTAHVE 59 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-----hcccccc-ccccccc------------------CChhhhhcCccEEeeeeE
Confidence 499999999999999999997521 1111100 0000000 001111122333322111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc-EEEEEe
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ-TRIILN 255 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~-iiiVlN 255 (468)
. .....+++||||||+.+ |...+...+..+|++++|+|+.. ++...+.+++..+...+.| +++|+|
T Consensus 60 ~--~~~~~~i~~iDtPG~~~----------~~~~~~~~~~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~~~~iIvviN 126 (195)
T cd01884 60 Y--ETANRHYAHVDCPGHAD----------YIKNMITGAAQMDGAILVVSATD-GPMPQTREHLLLARQVGVPYIVVFLN 126 (195)
T ss_pred e--cCCCeEEEEEECcCHHH----------HHHHHHHHhhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCcEEEEEe
Confidence 1 12236799999999864 44555666889999999999987 6788888888888877776 789999
Q ss_pred CCCCCChHH
Q psy13475 256 KADQVKPEE 264 (468)
Q Consensus 256 K~D~v~~~e 264 (468)
|+|++..++
T Consensus 127 K~D~~~~~~ 135 (195)
T cd01884 127 KADMVDDEE 135 (195)
T ss_pred CCCCCCcHH
Confidence 999985444
No 43
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.54 E-value=7.8e-14 Score=126.85 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=75.2
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
|.|+++|.+|+|||||+|+|++..+.. +.. +.++.....+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~-~~~---------------------------------------~~~t~~~~~~ 40 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV-APY---------------------------------------PFTTKSLFVG 40 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc-CCC---------------------------------------CCcccceeEE
Confidence 579999999999999999999976531 111 1122221111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCC-C-HhHHHHHHHHhcC--CCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDV-G-PETEAILDQLKGR--EYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i-~-~e~~~ll~~l~~~--~~~ii 251 (468)
.. ......+.|+||||+.+........+++ .........+|++++|+|++.... + +....+++.++.. +.|++
T Consensus 41 ~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~-~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvi 117 (168)
T cd01897 41 HF--DYKYLRWQVIDTPGLLDRPLEERNTIEM-QAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVI 117 (168)
T ss_pred EE--ccCceEEEEEECCCcCCccccCCchHHH-HHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeE
Confidence 11 1112579999999985421110011101 111122234699999999976321 1 3334566666554 68999
Q ss_pred EEEeCCCCCChHHH
Q psy13475 252 IILNKADQVKPEEL 265 (468)
Q Consensus 252 iVlNK~D~v~~~el 265 (468)
+|+||+|+......
T Consensus 118 lv~NK~Dl~~~~~~ 131 (168)
T cd01897 118 VVLNKIDLLTFEDL 131 (168)
T ss_pred EEEEccccCchhhH
Confidence 99999999865543
No 44
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.53 E-value=2.4e-13 Score=135.16 Aligned_cols=130 Identities=21% Similarity=0.266 Sum_probs=87.8
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
..|+|+|.|.||||||||++.|.+.+.-+ +++ |-||....
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEv--------------------------------A~Y--------PFTTK~i~ 206 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEV--------------------------------APY--------PFTTKGIH 206 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCcc--------------------------------CCC--------Ccccccee
Confidence 57899999999999999999999876532 112 34555555
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhh-hhhccchhH-HHHHhhcccCEEEEEEcCCCC-CCCHh-HHHHHHHHhcCC-C
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQ-VERQFPFND-ACQWFIDRADIIFLVYDPSKL-DVGPE-TEAILDQLKGRE-Y 248 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~-~~r~~d~~~-~~~~~~~~aDlIllV~Da~~~-~i~~e-~~~ll~~l~~~~-~ 248 (468)
.|..- .....+.+|||||+++-.-. .+. ... .+.....-.++|+|+||++.. +.+-+ ...+++.++..- .
T Consensus 207 vGhfe--~~~~R~QvIDTPGlLDRPl~ErN~---IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~ 281 (346)
T COG1084 207 VGHFE--RGYLRIQVIDTPGLLDRPLEERNE---IERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKA 281 (346)
T ss_pred Eeeee--cCCceEEEecCCcccCCChHHhcH---HHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCC
Confidence 55542 22357999999999974321 111 112 233334466899999999752 23333 346777776543 5
Q ss_pred cEEEEEeCCCCCChHHHHHH
Q psy13475 249 QTRIILNKADQVKPEELMRV 268 (468)
Q Consensus 249 ~iiiVlNK~D~v~~~el~~v 268 (468)
|+++|+||+|..+.+.+.+.
T Consensus 282 p~v~V~nK~D~~~~e~~~~~ 301 (346)
T COG1084 282 PIVVVINKIDIADEEKLEEI 301 (346)
T ss_pred CeEEEEecccccchhHHHHH
Confidence 89999999999987766555
No 45
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.52 E-value=1.8e-13 Score=129.32 Aligned_cols=126 Identities=24% Similarity=0.312 Sum_probs=76.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
.+.|+|+|++|||||||+|+|++.++... .. + +.|......
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~-~~----~----------------------------------~~t~~~~~~ 81 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAE-DQ----L----------------------------------FATLDPTTR 81 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccC-Cc----c----------------------------------ceeccceeE
Confidence 45799999999999999999999864311 11 0 011111111
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhh-hhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH---HHHHHHhcCCCcE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQ-VERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE---AILDQLKGREYQT 250 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~---~ll~~l~~~~~~i 250 (468)
.+..++. ..++||||||+.+.... .... +.. ....+..+|++++|+|++......... .++..+...+.|+
T Consensus 82 ~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~--~~~-~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~v 156 (204)
T cd01878 82 RLRLPDG--REVLLTDTVGFIRDLPHQLVEA--FRS-TLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPM 156 (204)
T ss_pred EEEecCC--ceEEEeCCCccccCCCHHHHHH--HHH-HHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCE
Confidence 2222221 37999999998643211 1111 212 223467899999999998633222222 3444444445799
Q ss_pred EEEEeCCCCCChHH
Q psy13475 251 RIILNKADQVKPEE 264 (468)
Q Consensus 251 iiVlNK~D~v~~~e 264 (468)
++|+||+|+.....
T Consensus 157 iiV~NK~Dl~~~~~ 170 (204)
T cd01878 157 ILVLNKIDLLDDEE 170 (204)
T ss_pred EEEEEccccCChHH
Confidence 99999999976543
No 46
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.52 E-value=2.3e-13 Score=127.14 Aligned_cols=127 Identities=21% Similarity=0.319 Sum_probs=79.8
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCc-ccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNE-YSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~-~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
..+.|+++|.+|+|||||||+|++.+ .+.++.. | ++++.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~----~-----------------------------------~~t~~- 62 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKT----P-----------------------------------GRTQL- 62 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC----C-----------------------------------CceeE-
Confidence 45679999999999999999999976 3322221 1 11111
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhhhh--hhhccchhHHHHHhh---cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIRKQ--VERQFPFNDACQWFI---DRADIIFLVYDPSKLDVGPETEAILDQLKGRE 247 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~~~--~~r~~d~~~~~~~~~---~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~ 247 (468)
+..... ..++.||||||+...... ..+. +......++ ..++++++|+|++. ..+.....+.+.+...+
T Consensus 63 ~~~~~~----~~~l~l~DtpG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~i~~~l~~~~ 135 (196)
T PRK00454 63 INFFEV----NDKLRLVDLPGYGYAKVSKEEKEK--WQKLIEEYLRTRENLKGVVLLIDSRH-PLKELDLQMIEWLKEYG 135 (196)
T ss_pred EEEEec----CCeEEEeCCCCCCCcCCCchHHHH--HHHHHHHHHHhCccceEEEEEEecCC-CCCHHHHHHHHHHHHcC
Confidence 111111 157999999997542111 1111 223333333 34578889999876 44555555666676677
Q ss_pred CcEEEEEeCCCCCChHHHHH
Q psy13475 248 YQTRIILNKADQVKPEELMR 267 (468)
Q Consensus 248 ~~iiiVlNK~D~v~~~el~~ 267 (468)
.|+++|+||+|+.+..+..+
T Consensus 136 ~~~iiv~nK~Dl~~~~~~~~ 155 (196)
T PRK00454 136 IPVLIVLTKADKLKKGERKK 155 (196)
T ss_pred CcEEEEEECcccCCHHHHHH
Confidence 89999999999987655433
No 47
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.52 E-value=8.5e-14 Score=130.44 Aligned_cols=74 Identities=30% Similarity=0.441 Sum_probs=59.7
Q ss_pred CcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 183 LEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 183 l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
...++||||||..+ |...+...+..+|++++|+|+.. ++.....+.+..+...+.|+++|+||+|+. .
T Consensus 69 ~~~i~~iDtPG~~~----------f~~~~~~~~~~~D~ailvVda~~-g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~-~ 136 (188)
T PF00009_consen 69 NRKITLIDTPGHED----------FIKEMIRGLRQADIAILVVDAND-GIQPQTEEHLKILRELGIPIIVVLNKMDLI-E 136 (188)
T ss_dssp SEEEEEEEESSSHH----------HHHHHHHHHTTSSEEEEEEETTT-BSTHHHHHHHHHHHHTT-SEEEEEETCTSS-H
T ss_pred ccceeecccccccc----------eeecccceecccccceeeeeccc-ccccccccccccccccccceEEeeeeccch-h
Confidence 36799999999865 33445555889999999999988 688889999999998899999999999999 4
Q ss_pred HHHHHH
Q psy13475 263 EELMRV 268 (468)
Q Consensus 263 ~el~~v 268 (468)
.++.++
T Consensus 137 ~~~~~~ 142 (188)
T PF00009_consen 137 KELEEI 142 (188)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 444444
No 48
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.51 E-value=1.1e-13 Score=132.17 Aligned_cols=134 Identities=21% Similarity=0.093 Sum_probs=80.2
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCC-----CCCC---ceeEEEecCCCCccccCcccccCccccccccccccc
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGA-----EPSP---AYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGL 169 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~-----~ptT---~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt 169 (468)
|+|+|++|+|||||+|+|++..-.+++...|. ..++ -.+..++. +...++-.++|
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d-----------------~~~~e~~rg~T 64 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVD-----------------GLQAEREQGIT 64 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeecc-----------------CChhhhcCCcC
Confidence 79999999999999999998755443211000 0000 01111111 11122223455
Q ss_pred eeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC-C
Q psy13475 170 LDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE-Y 248 (468)
Q Consensus 170 ~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~-~ 248 (468)
++....... ....++.|+||||+.+ |...+...+..+|++++|+|++. +........+..+...+ .
T Consensus 65 ~~~~~~~~~--~~~~~~~liDTpG~~~----------~~~~~~~~~~~ad~~llVvD~~~-~~~~~~~~~~~~~~~~~~~ 131 (208)
T cd04166 65 IDVAYRYFS--TPKRKFIIADTPGHEQ----------YTRNMVTGASTADLAILLVDARK-GVLEQTRRHSYILSLLGIR 131 (208)
T ss_pred eecceeEEe--cCCceEEEEECCcHHH----------HHHHHHHhhhhCCEEEEEEECCC-CccHhHHHHHHHHHHcCCC
Confidence 554433331 2236799999999743 22334445789999999999987 45555555555554444 4
Q ss_pred cEEEEEeCCCCCC
Q psy13475 249 QTRIILNKADQVK 261 (468)
Q Consensus 249 ~iiiVlNK~D~v~ 261 (468)
++++|+||+|+..
T Consensus 132 ~iIvviNK~D~~~ 144 (208)
T cd04166 132 HVVVAVNKMDLVD 144 (208)
T ss_pred cEEEEEEchhccc
Confidence 5788999999874
No 49
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.51 E-value=1.1e-13 Score=141.29 Aligned_cols=124 Identities=20% Similarity=0.221 Sum_probs=80.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
-|+|||.||||||||||+|.+.+.. ++.. +.||+....+.
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~-va~y---------------------------------------pfTT~~p~~G~ 199 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPK-IADY---------------------------------------PFTTLHPNLGV 199 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCc-cCCC---------------------------------------CCceeCceEEE
Confidence 4999999999999999999986532 2222 23444444443
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc-----CCCcEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG-----REYQTR 251 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~-----~~~~ii 251 (468)
... .....++++||||+.+...+ .++ +.......++++|++++|+|++..+..+....+.+.+.. .+.|++
T Consensus 200 v~~-~~~~~~~i~D~PGli~ga~~-~~g--Lg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~I 275 (335)
T PRK12299 200 VRV-DDYKSFVIADIPGLIEGASE-GAG--LGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRI 275 (335)
T ss_pred EEe-CCCcEEEEEeCCCccCCCCc-ccc--HHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeE
Confidence 311 12256999999999764322 112 222334457899999999999864322334445555543 257999
Q ss_pred EEEeCCCCCChHH
Q psy13475 252 IILNKADQVKPEE 264 (468)
Q Consensus 252 iVlNK~D~v~~~e 264 (468)
+|+||+|+.+..+
T Consensus 276 IV~NKiDL~~~~~ 288 (335)
T PRK12299 276 LVLNKIDLLDEEE 288 (335)
T ss_pred EEEECcccCCchh
Confidence 9999999976543
No 50
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.50 E-value=9.8e-14 Score=126.66 Aligned_cols=124 Identities=27% Similarity=0.248 Sum_probs=73.5
Q ss_pred EeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEeecC
Q psy13475 100 FMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQLP 179 (468)
Q Consensus 100 ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~~~ 179 (468)
++|++|||||||+|+|.|.+. .++.. +.+|.....+....
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~---------------------------------------~~~t~~~~~~~~~~ 40 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANY---------------------------------------PFTTLEPNLGVVEV 40 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCC---------------------------------------CceeecCcceEEEc
Confidence 589999999999999999875 22222 11222111111111
Q ss_pred CCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC------CCHhHHHHHHHHhc--------
Q psy13475 180 HPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD------VGPETEAILDQLKG-------- 245 (468)
Q Consensus 180 ~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~------i~~e~~~ll~~l~~-------- 245 (468)
. ....+.|+||||+....... +. +.......+..+|++++|+|+.... ..++...+...+..
T Consensus 41 ~-~~~~~~i~DtpG~~~~~~~~-~~--~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (176)
T cd01881 41 P-DGARIQVADIPGLIEGASEG-RG--LGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILG 116 (176)
T ss_pred C-CCCeEEEEeccccchhhhcC-CC--ccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHH
Confidence 1 13678999999986432211 11 2223344577899999999998641 11122222222221
Q ss_pred --CCCcEEEEEeCCCCCChHHHHH
Q psy13475 246 --REYQTRIILNKADQVKPEELMR 267 (468)
Q Consensus 246 --~~~~iiiVlNK~D~v~~~el~~ 267 (468)
...|+++|+||+|+........
T Consensus 117 ~~~~~p~ivv~NK~Dl~~~~~~~~ 140 (176)
T cd01881 117 LLTAKPVIYVLNKIDLDDAEELEE 140 (176)
T ss_pred HHhhCCeEEEEEchhcCchhHHHH
Confidence 3579999999999986655433
No 51
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.49 E-value=2.2e-13 Score=135.33 Aligned_cols=128 Identities=19% Similarity=0.237 Sum_probs=83.0
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee-eEEe
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR-LRGL 176 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~-i~~~ 176 (468)
|+++|++|+|||||+|+|+...-.+ .+.|. +-.|++. .| +...++..+.+++. ....
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~--~~~g~-----------------v~~~~~~-~D--~~~~E~~rgiti~~~~~~~ 59 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRI--HKIGE-----------------VHGGGAT-MD--FMEQERERGITIQSAATTC 59 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCC--ccccc-----------------ccCCccc-cC--CCccccCCCcCeeccEEEE
Confidence 7899999999999999998632211 11110 0011111 11 01111112222221 2222
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
.+ . ..+++||||||+.+ |...+..++..+|++++|+|+.. ++......+++.+...+.|+++++||
T Consensus 60 ~~-~--~~~i~liDTPG~~d----------f~~~~~~~l~~aD~ailVVDa~~-g~~~~t~~~~~~~~~~~~p~ivviNK 125 (270)
T cd01886 60 FW-K--DHRINIIDTPGHVD----------FTIEVERSLRVLDGAVAVFDAVA-GVEPQTETVWRQADRYNVPRIAFVNK 125 (270)
T ss_pred EE-C--CEEEEEEECCCcHH----------HHHHHHHHHHHcCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 22 2 26799999999865 33446667899999999999987 67778888888888888999999999
Q ss_pred CCCCC
Q psy13475 257 ADQVK 261 (468)
Q Consensus 257 ~D~v~ 261 (468)
+|+..
T Consensus 126 ~D~~~ 130 (270)
T cd01886 126 MDRTG 130 (270)
T ss_pred CCCCC
Confidence 99874
No 52
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.49 E-value=2.7e-13 Score=121.50 Aligned_cols=114 Identities=22% Similarity=0.322 Sum_probs=72.1
Q ss_pred EeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee-EEeec
Q psy13475 100 FMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL-RGLQL 178 (468)
Q Consensus 100 ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i-~~~~~ 178 (468)
++|.+|+|||||+|+|.|.... ++..| +++.+.. ..+.+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~-----~~~~~-----------------------------------~~t~~~~~~~~~~ 40 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-----VGNWP-----------------------------------GVTVEKKEGRFKL 40 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc-----ccCCC-----------------------------------CcccccceEEEee
Confidence 5899999999999999997632 22112 2222211 11222
Q ss_pred CCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhh--cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 179 PHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFI--DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 179 ~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~--~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
+ ..++.+|||||+.+....-.. ......++ ..+|++++|+|+... +.....+..+...+.|+++|+||
T Consensus 41 ~---~~~~~liDtpG~~~~~~~~~~----~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~~~~~~~~~iiv~NK 110 (158)
T cd01879 41 G---GKEIEIVDLPGTYSLSPYSED----EKVARDFLLGEKPDLIVNVVDATNL---ERNLYLTLQLLELGLPVVVALNM 110 (158)
T ss_pred C---CeEEEEEECCCccccCCCChh----HHHHHHHhcCCCCcEEEEEeeCCcc---hhHHHHHHHHHHcCCCEEEEEeh
Confidence 2 147999999998653221000 01223334 599999999999863 22334455566667899999999
Q ss_pred CCCCChH
Q psy13475 257 ADQVKPE 263 (468)
Q Consensus 257 ~D~v~~~ 263 (468)
+|+.+..
T Consensus 111 ~Dl~~~~ 117 (158)
T cd01879 111 IDEAEKR 117 (158)
T ss_pred hhhcccc
Confidence 9997543
No 53
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.48 E-value=5.2e-13 Score=125.33 Aligned_cols=71 Identities=24% Similarity=0.224 Sum_probs=49.3
Q ss_pred CcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 183 LEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 183 l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
...++||||||..+ +.......+..+|++++|+|+.. +......+.+......+.|+++|+||+|+...
T Consensus 67 ~~~~~i~DtpG~~~----------~~~~~~~~~~~~d~vi~VvD~~~-~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 67 NLQITLVDCPGHAS----------LIRTIIGGAQIIDLMLLVVDATK-GIQTQTAECLVIGEILCKKLIVVLNKIDLIPE 135 (192)
T ss_pred CceEEEEECCCcHH----------HHHHHHHHHhhCCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 35799999999853 22333444678999999999987 44444443333333346799999999999865
Q ss_pred HH
Q psy13475 263 EE 264 (468)
Q Consensus 263 ~e 264 (468)
.+
T Consensus 136 ~~ 137 (192)
T cd01889 136 EE 137 (192)
T ss_pred HH
Confidence 44
No 54
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.48 E-value=3.5e-13 Score=132.36 Aligned_cols=125 Identities=20% Similarity=0.243 Sum_probs=80.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+++|++|+|||||+|+|+|.+.+.++.. .|+| .....
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~---~~~T------------------------------------~~~~~ 71 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERKAATSAF---QSET------------------------------------LRVRE 71 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCcccCCC---CCce------------------------------------EEEEE
Confidence 34699999999999999999999987654322 1222 11111
Q ss_pred EeecCCCCCcceEEEeCCCCchhh--hhhhhccchhHHHHHhhc--ccCEEEEEEcCCCCCCCHhHHHHHHHHhcC----
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIR--KQVERQFPFNDACQWFID--RADIIFLVYDPSKLDVGPETEAILDQLKGR---- 246 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~--~~~~r~~d~~~~~~~~~~--~aDlIllV~Da~~~~i~~e~~~ll~~l~~~---- 246 (468)
.... .....++||||||+.+.. ...++. ....+..++. ..|+|++|...+....+..+..+++.+...
T Consensus 72 ~~~~--~~g~~i~vIDTPGl~~~~~~~~~~~~--~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~ 147 (249)
T cd01853 72 VSGT--VDGFKLNIIDTPGLLESVMDQRVNRK--ILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS 147 (249)
T ss_pred EEEE--ECCeEEEEEECCCcCcchhhHHHHHH--HHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh
Confidence 1111 112579999999999763 222222 2233343443 678999997665444566666777766542
Q ss_pred -CCcEEEEEeCCCCCCh
Q psy13475 247 -EYQTRIILNKADQVKP 262 (468)
Q Consensus 247 -~~~iiiVlNK~D~v~~ 262 (468)
-.++++|+||+|...+
T Consensus 148 i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 148 IWRNAIVVLTHAASSPP 164 (249)
T ss_pred hHhCEEEEEeCCccCCC
Confidence 1479999999998744
No 55
>PRK04213 GTP-binding protein; Provisional
Probab=99.47 E-value=5.8e-13 Score=125.49 Aligned_cols=121 Identities=21% Similarity=0.297 Sum_probs=74.6
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
..+.|+++|.+|+|||||+|+|.|..+. ++..| ++++...
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-----~~~~~-----------------------------------~~t~~~~ 47 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-----VGKRP-----------------------------------GVTRKPN 47 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-----cCCCC-----------------------------------ceeeCce
Confidence 3457999999999999999999997643 22222 2222211
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhh---hhhhccchhHHH----HHhhcccCEEEEEEcCCCCC-C---------CHhH
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRK---QVERQFPFNDAC----QWFIDRADIIFLVYDPSKLD-V---------GPET 236 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~---~~~r~~d~~~~~----~~~~~~aDlIllV~Da~~~~-i---------~~e~ 236 (468)
. ... .++.+|||||+..... ..... +.... ...+..+|++++|+|+.... + .+..
T Consensus 48 ~-~~~-----~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~ 119 (201)
T PRK04213 48 H-YDW-----GDFILTDLPGFGFMSGVPKEVQEK--IKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPID 119 (201)
T ss_pred E-Eee-----cceEEEeCCccccccccCHHHHHH--HHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHH
Confidence 1 111 2589999999743211 11111 22222 22355678999999986421 1 1223
Q ss_pred HHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 237 EAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 237 ~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
.+++..+...+.|+++|+||+|+...
T Consensus 120 ~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 120 VEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred HHHHHHHHHcCCCeEEEEECccccCc
Confidence 45566666667899999999998754
No 56
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.47 E-value=4e-13 Score=123.63 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=49.0
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..+.|+||||..+. ......++..+|++++|+|++. +.+.+....+..+...+.|+++|+||+|+.+
T Consensus 67 ~~~~l~Dt~G~~~~----------~~~~~~~~~~ad~~i~v~D~~~-~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 67 YLLNLIDTPGHVDF----------SYEVSRSLAACEGALLLVDATQ-GVEAQTLANFYLALENNLEIIPVINKIDLPS 133 (179)
T ss_pred EEEEEEECCCChhh----------HHHHHHHHHhcCeEEEEEECCC-CccHhhHHHHHHHHHcCCCEEEEEECCCCCc
Confidence 56889999998653 3345556789999999999987 4444444444444445689999999999864
No 57
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=9.6e-13 Score=140.04 Aligned_cols=125 Identities=22% Similarity=0.222 Sum_probs=78.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
.-|+|||.||||||||||+|.+.+..+ +.. +.||+....+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkI-ady---------------------------------------pfTTl~P~lG 199 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKI-ADY---------------------------------------PFTTLVPNLG 199 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccc-ccc---------------------------------------CcccccceEE
Confidence 359999999999999999999865321 211 3455554444
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC----CCHhHHHHHHHHh-------
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD----VGPETEAILDQLK------- 244 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~----i~~e~~~ll~~l~------- 244 (468)
+..... .+++|+||||+.++..+ .++ +.......++++|++++|+|++... .-.....+.+.|.
T Consensus 200 vv~~~~--~~f~laDtPGliegas~-g~g--Lg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~ 274 (500)
T PRK12296 200 VVQAGD--TRFTVADVPGLIPGASE-GKG--LGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALD 274 (500)
T ss_pred EEEECC--eEEEEEECCCCccccch-hhH--HHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhccc
Confidence 432222 57999999999754322 111 2222344578999999999997521 1112222222221
Q ss_pred -------cCCCcEEEEEeCCCCCChHHH
Q psy13475 245 -------GREYQTRIILNKADQVKPEEL 265 (468)
Q Consensus 245 -------~~~~~iiiVlNK~D~v~~~el 265 (468)
-...|+++|+||+|+.+..++
T Consensus 275 ~~~~~~~l~~kP~IVVlNKiDL~da~el 302 (500)
T PRK12296 275 GDLGLGDLAERPRLVVLNKIDVPDAREL 302 (500)
T ss_pred ccchhhhhcCCCEEEEEECccchhhHHH
Confidence 135799999999998755443
No 58
>CHL00071 tufA elongation factor Tu
Probab=99.46 E-value=5.5e-13 Score=139.98 Aligned_cols=132 Identities=17% Similarity=0.118 Sum_probs=85.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|++++|||||+|+|++....+.+.. . ..+....+ ...++-.+.|++.....
T Consensus 14 ~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~-----~-~~~~~~d~------------------~~~e~~rg~T~~~~~~~ 69 (409)
T CHL00071 14 NIGTIGHVDHGKTTLTAAITMTLAAKGGAK-----A-KKYDEIDS------------------APEEKARGITINTAHVE 69 (409)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCcccccc-----c-cccccccC------------------ChhhhcCCEeEEccEEE
Confidence 399999999999999999998633211100 0 00000000 01111123333322211
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc-EEEEEe
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ-TRIILN 255 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~-iiiVlN 255 (468)
. .....+++||||||+.+ |...+...+..+|++++|+|+.. ++..++.+++..+...+.| +++|+|
T Consensus 70 ~--~~~~~~~~~iDtPGh~~----------~~~~~~~~~~~~D~~ilVvda~~-g~~~qt~~~~~~~~~~g~~~iIvvvN 136 (409)
T CHL00071 70 Y--ETENRHYAHVDCPGHAD----------YVKNMITGAAQMDGAILVVSAAD-GPMPQTKEHILLAKQVGVPNIVVFLN 136 (409)
T ss_pred E--ccCCeEEEEEECCChHH----------HHHHHHHHHHhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEEE
Confidence 1 12236799999999653 44555666889999999999987 6788888888888777778 778999
Q ss_pred CCCCCChHHH
Q psy13475 256 KADQVKPEEL 265 (468)
Q Consensus 256 K~D~v~~~el 265 (468)
|+|+++.++.
T Consensus 137 K~D~~~~~~~ 146 (409)
T CHL00071 137 KEDQVDDEEL 146 (409)
T ss_pred ccCCCCHHHH
Confidence 9999876554
No 59
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.46 E-value=4.2e-13 Score=140.79 Aligned_cols=122 Identities=21% Similarity=0.153 Sum_probs=76.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
-|+++|.||||||||||+|.+.+..+ +.. +.||+....+.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kI-a~y---------------------------------------pfTTl~PnlG~ 199 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKI-ANY---------------------------------------HFTTLVPNLGV 199 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCcc-ccC---------------------------------------CcceeceEEEE
Confidence 59999999999999999999876321 111 22333332222
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCC---CCCHhHHHHHHHHhc-----CCC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKL---DVGPETEAILDQLKG-----REY 248 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~---~i~~e~~~ll~~l~~-----~~~ 248 (468)
.... ....++|+||||+.+.... ..+ +.......++++|++++|+|++.. +..+....+.+.|.. ...
T Consensus 200 v~~~-~~~~~~laD~PGliega~~-~~g--Lg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~k 275 (424)
T PRK12297 200 VETD-DGRSFVMADIPGLIEGASE-GVG--LGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLER 275 (424)
T ss_pred EEEe-CCceEEEEECCCCcccccc-cch--HHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCC
Confidence 2111 1257999999999764322 111 222233447889999999999753 222334445555543 357
Q ss_pred cEEEEEeCCCCCCh
Q psy13475 249 QTRIILNKADQVKP 262 (468)
Q Consensus 249 ~iiiVlNK~D~v~~ 262 (468)
|+++|+||+|+...
T Consensus 276 P~IVV~NK~DL~~~ 289 (424)
T PRK12297 276 PQIVVANKMDLPEA 289 (424)
T ss_pred cEEEEEeCCCCcCC
Confidence 99999999997543
No 60
>COG2262 HflX GTPases [General function prediction only]
Probab=99.45 E-value=1.2e-12 Score=133.68 Aligned_cols=191 Identities=24% Similarity=0.295 Sum_probs=113.8
Q ss_pred HhhhhcccCCCCCcchhhHH------HHhhcCcchhHHHH-HHHHHHHHHHHHHHHHHhhhcchhhhhhccccccCCCCC
Q psy13475 16 TQKQEDIEIPDNLRDKRHVH------GILKLDEEFKEEEE-LLAKTIETTLKELKRLYDNAIKPLEITYKYRDLSNRHFA 88 (468)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ie------~~l~~~ee~~~~d~-~~~~~~~~v~~~l~~ly~~~~~ple~~~~~~~~~s~~l~ 88 (468)
.++|+.-+++++.+...+++ ....-+|-..+.|. .+...+..+..+|.++-+.. +...+ .
T Consensus 120 eLAqL~Y~lpRl~~~~~~l~~~GggiG~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R----~~~R~-------~-- 186 (411)
T COG2262 120 ELAQLRYELPRLVGSGSHLSRLGGGIGFRGPGETQLETDRRRIRRRIAKLKRELENVEKAR----EPRRK-------K-- 186 (411)
T ss_pred hHHhhhhhhhHhHhhhhhcccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhh-------h--
Confidence 57888889998877777777 23333343333332 22233333333333332221 11100 0
Q ss_pred CccccCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcccccccccccc
Q psy13475 89 DPEIFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQG 168 (468)
Q Consensus 89 d~~~~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~t 168 (468)
-.-..-|.|+++|.+|+|||||+|+|.|..... .|.-|..|. .|
T Consensus 187 -R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~--------------------------------~d~LFATLd---pt 230 (411)
T COG2262 187 -RSRSGIPLVALVGYTNAGKSTLFNALTGADVYV--------------------------------ADQLFATLD---PT 230 (411)
T ss_pred -hcccCCCeEEEEeeccccHHHHHHHHhccCeec--------------------------------ccccccccc---Cc
Confidence 001134679999999999999999999876531 222233332 12
Q ss_pred ceeeeEEeecCCCCCcceEEEeCCCCchhhh-hhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHH---HHHHh
Q psy13475 169 LLDRLRGLQLPHPLLEKINIVEIPGILEIRK-QVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAI---LDQLK 244 (468)
Q Consensus 169 t~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~-~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~l---l~~l~ 244 (468)
+ ..+.+++ +.++.+-||-|+...-. .+-.. | ..+..-...||++++|+|++...+......+ +..+.
T Consensus 231 t----R~~~l~~--g~~vlLtDTVGFI~~LP~~LV~A--F-ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~ 301 (411)
T COG2262 231 T----RRIELGD--GRKVLLTDTVGFIRDLPHPLVEA--F-KSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIG 301 (411)
T ss_pred e----eEEEeCC--CceEEEecCccCcccCChHHHHH--H-HHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcC
Confidence 2 2234444 37899999999986433 23333 2 4455667899999999999985444444444 44443
Q ss_pred cCCCcEEEEEeCCCCCChHH
Q psy13475 245 GREYQTRIILNKADQVKPEE 264 (468)
Q Consensus 245 ~~~~~iiiVlNK~D~v~~~e 264 (468)
-...|++.|+||+|++....
T Consensus 302 ~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 302 ADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred CCCCCEEEEEecccccCchh
Confidence 35579999999999986654
No 61
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.44 E-value=1.4e-12 Score=133.06 Aligned_cols=124 Identities=26% Similarity=0.293 Sum_probs=77.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
-|+++|.||||||||+|+|.+.+.. ++..| .||+....+.
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~-----va~y~-----------------------------------fTT~~p~ig~ 198 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPK-----IADYP-----------------------------------FTTLVPNLGV 198 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCcc-----ccCCC-----------------------------------CCccCCEEEE
Confidence 4999999999999999999986432 21111 2222222222
Q ss_pred e-cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC---CCHhHHHHHHHHhc-----CC
Q psy13475 177 Q-LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD---VGPETEAILDQLKG-----RE 247 (468)
Q Consensus 177 ~-~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~---i~~e~~~ll~~l~~-----~~ 247 (468)
. +.. ..+++|+||||+.+.... .++ +.......++++|++++|+|++..+ .-+....+.+.+.. ..
T Consensus 199 v~~~~--~~~~~i~D~PGli~~a~~-~~g--Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~ 273 (329)
T TIGR02729 199 VRVDD--GRSFVIADIPGLIEGASE-GAG--LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAE 273 (329)
T ss_pred EEeCC--ceEEEEEeCCCcccCCcc-ccc--HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhcc
Confidence 2 111 257999999999754322 111 2233344578999999999998631 11233344444432 24
Q ss_pred CcEEEEEeCCCCCChHHH
Q psy13475 248 YQTRIILNKADQVKPEEL 265 (468)
Q Consensus 248 ~~iiiVlNK~D~v~~~el 265 (468)
.|+++|+||+|+......
T Consensus 274 kp~IIV~NK~DL~~~~~~ 291 (329)
T TIGR02729 274 KPRIVVLNKIDLLDEEEL 291 (329)
T ss_pred CCEEEEEeCccCCChHHH
Confidence 799999999999865443
No 62
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.44 E-value=6.4e-13 Score=148.79 Aligned_cols=122 Identities=18% Similarity=0.217 Sum_probs=82.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
+..|+++|++|+|||||+|+|.|.+. .+++. +++|.++..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~---------------------------------------pGvTve~k~ 42 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNW---------------------------------------AGVTVERKE 42 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCC---------------------------------------CCceEeeEE
Confidence 34699999999999999999999754 22222 345556555
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchh-HHHHHh--hcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFN-DACQWF--IDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTR 251 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~-~~~~~~--~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ii 251 (468)
+.... ....+.+|||||+.+-...... +... .+++.+ .+.+|++++|+|++.. +....+..++.+.+.|++
T Consensus 43 g~~~~--~~~~i~lvDtPG~ysl~~~~~~-~s~~E~i~~~~l~~~~aD~vI~VvDat~l---er~l~l~~ql~e~giPvI 116 (772)
T PRK09554 43 GQFST--TDHQVTLVDLPGTYSLTTISSQ-TSLDEQIACHYILSGDADLLINVVDASNL---ERNLYLTLQLLELGIPCI 116 (772)
T ss_pred EEEEc--CceEEEEEECCCcccccccccc-ccHHHHHHHHHHhccCCCEEEEEecCCcc---hhhHHHHHHHHHcCCCEE
Confidence 54422 2367999999999764321110 0011 123333 3589999999999873 233445667777889999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|+||+|..+.
T Consensus 117 vVlNK~Dl~~~ 127 (772)
T PRK09554 117 VALNMLDIAEK 127 (772)
T ss_pred EEEEchhhhhc
Confidence 99999998643
No 63
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.44 E-value=3e-12 Score=114.92 Aligned_cols=127 Identities=24% Similarity=0.315 Sum_probs=77.5
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|.+|+|||||+|.|++..... ..++.+ +. +.. .....
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~---~~~~~~----------------------------------~~-t~~-~~~~~ 42 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA---RTSKTP----------------------------------GK-TQL-INFFN 42 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee---eecCCC----------------------------------Cc-cee-EEEEE
Confidence 7899999999999999999543321 111111 11 111 11111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHh---hcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWF---IDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIIL 254 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~---~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVl 254 (468)
. . ..++++||||+............+......+ .+.++++++++|... ..+.....+++.+...+.|+++|+
T Consensus 43 ~--~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~l~~~~~~vi~v~ 117 (170)
T cd01876 43 V--N--DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRH-GPTEIDLEMLDWLEELGIPFLVVL 117 (170)
T ss_pred c--c--CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCc-CCCHhHHHHHHHHHHcCCCEEEEE
Confidence 1 1 2799999999876421100000022222222 245688999999976 345566667777777778999999
Q ss_pred eCCCCCChHHHHHH
Q psy13475 255 NKADQVKPEELMRV 268 (468)
Q Consensus 255 NK~D~v~~~el~~v 268 (468)
||+|+...++....
T Consensus 118 nK~D~~~~~~~~~~ 131 (170)
T cd01876 118 TKADKLKKSELAKA 131 (170)
T ss_pred EchhcCChHHHHHH
Confidence 99999866554443
No 64
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.44 E-value=2e-12 Score=121.57 Aligned_cols=67 Identities=27% Similarity=0.437 Sum_probs=51.8
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..+.|+||||..+ |......++..+|++++|+|++. +.......++..+...+.|+++|+||+|+..
T Consensus 65 ~~~~l~DtpG~~~----------~~~~~~~~~~~~d~~ilV~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 65 TKINIVDTPGHAD----------FGGEVERVLSMVDGVLLLVDASE-GPMPQTRFVLKKALELGLKPIVVINKIDRPD 131 (194)
T ss_pred EEEEEEECCCcHH----------HHHHHHHHHHhcCEEEEEEECCC-CccHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 5789999999865 33445566889999999999987 4445555666666666789999999999864
No 65
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.43 E-value=1.6e-12 Score=114.55 Aligned_cols=123 Identities=27% Similarity=0.325 Sum_probs=79.4
Q ss_pred EeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEeecC
Q psy13475 100 FMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQLP 179 (468)
Q Consensus 100 ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~~~ 179 (468)
++|++|+|||||+|+|.+......+.. .+ ++........ .
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~---~~------------------------------------~~~~~~~~~~-~ 40 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPV---PG------------------------------------TTTDPVEYVW-E 40 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCC---CC------------------------------------cEECCeEEEE-E
Confidence 589999999999999999876532211 11 1111111111 1
Q ss_pred CCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCC
Q psy13475 180 HPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQ 259 (468)
Q Consensus 180 ~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~ 259 (468)
......+.++||||+.+....... +...+..++..+|++++|+|+... .......++........|+++|+||+|+
T Consensus 41 ~~~~~~~~~~Dt~g~~~~~~~~~~---~~~~~~~~~~~~d~il~v~~~~~~-~~~~~~~~~~~~~~~~~~~ivv~nK~D~ 116 (163)
T cd00880 41 LGPLGPVVLIDTPGIDEAGGLGRE---REELARRVLERADLILFVVDADLR-ADEEEEKLLELLRERGKPVLLVLNKIDL 116 (163)
T ss_pred ecCCCcEEEEECCCCCccccchhh---HHHHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHhcCCeEEEEEEcccc
Confidence 111367999999999875432111 123456678899999999999884 3444433455555667899999999999
Q ss_pred CChHHHH
Q psy13475 260 VKPEELM 266 (468)
Q Consensus 260 v~~~el~ 266 (468)
.......
T Consensus 117 ~~~~~~~ 123 (163)
T cd00880 117 LPEEEEE 123 (163)
T ss_pred CChhhHH
Confidence 8765443
No 66
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.42 E-value=7.7e-13 Score=119.29 Aligned_cols=114 Identities=20% Similarity=0.314 Sum_probs=72.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE-
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG- 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~- 175 (468)
.|+++|++|+|||||+|.|++.++... ..|+ ++.+....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~-----~~~~-----------------------------------~~~~~~~~~ 41 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQ-----YQAT-----------------------------------IGIDFLSKT 41 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-----CCCc-----------------------------------eeeeEEEEE
Confidence 389999999999999999999887531 1111 11111111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh-cC--CCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK-GR--EYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~-~~--~~~iii 252 (468)
+..+ .....+.++||||... +......++..+|++++|+|.+....-.....++..+. .. +.|+++
T Consensus 42 ~~~~-~~~~~l~~~D~~G~~~----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iil 110 (161)
T cd01861 42 MYLE-DKTVRLQLWDTAGQER----------FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVL 110 (161)
T ss_pred EEEC-CEEEEEEEEECCCcHH----------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 1111 1113589999999543 22345556889999999999976311122233444332 22 479999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+..
T Consensus 111 v~nK~D~~~ 119 (161)
T cd01861 111 VGNKTDLSD 119 (161)
T ss_pred EEEChhccc
Confidence 999999853
No 67
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.42 E-value=9e-13 Score=116.96 Aligned_cols=114 Identities=18% Similarity=0.267 Sum_probs=73.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|.+..+.... .||+. .+... ...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~-----~~t~~--------------------------------~~~~~--~~~ 42 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENY-----KSTIG--------------------------------VDFKS--KTI 42 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCcc-----CCcee--------------------------------eeeEE--EEE
Confidence 4899999999999999999998775321 11110 00000 001
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC---CCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR---EYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~---~~~iiiV 253 (468)
.. ......+.++||||... +......++..+|++++|+|++....-.....++..+... ..|+++|
T Consensus 43 ~~-~~~~~~~~l~D~~g~~~----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv 111 (159)
T cd00154 43 EI-DGKTVKLQIWDTAGQER----------FRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILV 111 (159)
T ss_pred EE-CCEEEEEEEEecCChHH----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 11 11224688999999743 3344666788999999999997622112233444444433 4799999
Q ss_pred EeCCCCC
Q psy13475 254 LNKADQV 260 (468)
Q Consensus 254 lNK~D~v 260 (468)
+||+|..
T Consensus 112 ~nK~D~~ 118 (159)
T cd00154 112 GNKIDLE 118 (159)
T ss_pred EEccccc
Confidence 9999996
No 68
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.41 E-value=1.8e-12 Score=125.31 Aligned_cols=67 Identities=24% Similarity=0.364 Sum_probs=55.8
Q ss_pred CcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 183 LEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 183 l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
...+.||||||+.+ |...+..++..+|.+++|+|+.. +...+...++..+...+.|+++|+||+|+.
T Consensus 72 ~~~i~iiDTPG~~~----------f~~~~~~~l~~aD~~ilVvD~~~-g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVD----------FSSEVTAALRLCDGALVVVDAVE-GVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccc----------cHHHHHHHHHhcCeeEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 35789999999875 44556677899999999999988 677788888887766678999999999975
No 69
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.40 E-value=6.1e-13 Score=129.56 Aligned_cols=122 Identities=20% Similarity=0.345 Sum_probs=82.5
Q ss_pred CCCE-EEEeccCCCChhhHHHHHhCCcccccccC-CCCCCCCceeEEEecCCCCccccCcccccCcccccccccccccee
Q psy13475 94 SKPL-VLFMGPWSGGKSSIINYLLDNEYSQNSLR-TGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLD 171 (468)
Q Consensus 94 ~~p~-V~ivG~~n~GKSTLIN~Llg~~~~~vs~~-~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~ 171 (468)
..|+ |+++|.+|+|||||||+|++.+...|+.- +|..|+| +
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~------------------------------------~- 79 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITT------------------------------------R- 79 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchh------------------------------------h-
Confidence 4566 78999999999999999997766654421 2222221 1
Q ss_pred eeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH-hcCCCcE
Q psy13475 172 RLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL-KGREYQT 250 (468)
Q Consensus 172 ~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l-~~~~~~i 250 (468)
... ...+..++|+||||+.++... ++. +.+.....+.+.|+|++++++...+++.....+.+.+ ...+.++
T Consensus 80 ---~~~--~~~~~~l~lwDtPG~gdg~~~-D~~--~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~ 151 (296)
T COG3596 80 ---LRL--SYDGENLVLWDTPGLGDGKDK-DAE--HRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRV 151 (296)
T ss_pred ---HHh--hccccceEEecCCCcccchhh-hHH--HHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCcee
Confidence 011 122377999999999986533 222 4456788899999999999998755444333222222 2345899
Q ss_pred EEEEeCCCCC
Q psy13475 251 RIILNKADQV 260 (468)
Q Consensus 251 iiVlNK~D~v 260 (468)
++|+|.+|..
T Consensus 152 i~~VtQ~D~a 161 (296)
T COG3596 152 LFVVTQADRA 161 (296)
T ss_pred EEEEehhhhh
Confidence 9999999975
No 70
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.40 E-value=1.5e-12 Score=117.88 Aligned_cols=114 Identities=15% Similarity=0.255 Sum_probs=70.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|||||||+|++++..+.. ...||+.. .+. ...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~-----~~~~t~~~--------------------------------~~~---~~~ 41 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD-----DYDPTIED--------------------------------SYR---KQI 41 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc-----ccCCchhh--------------------------------hEE---EEE
Confidence 48999999999999999999887642 11222211 000 011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH----hcCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL----KGREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l----~~~~~~iii 252 (468)
.. ......+.++||||... +......++..+|.+++|+|++....-+....+...+ ...+.|+++
T Consensus 42 ~~-~~~~~~l~i~Dt~g~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~ 110 (164)
T smart00173 42 EI-DGEVCLLDILDTAGQEE----------FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVL 110 (164)
T ss_pred EE-CCEEEEEEEEECCCccc----------chHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 11 11124578999999654 2233455678899999999997621111122222222 233579999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|.||+|+..
T Consensus 111 v~nK~Dl~~ 119 (164)
T smart00173 111 VGNKCDLES 119 (164)
T ss_pred EEECccccc
Confidence 999999864
No 71
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.40 E-value=2.3e-12 Score=125.65 Aligned_cols=128 Identities=21% Similarity=0.291 Sum_probs=82.3
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccc-cccceeeeEEe
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKF-GQGLLDRLRGL 176 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~f-g~tt~~~i~~~ 176 (468)
|+++|++|+|||||+|+|+...-.+ .+.|.- ..|++ ..|+ ...++. |-+.......+
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i--~~~g~v-----------------~~~~~-~~D~--~~~e~~rg~ti~~~~~~~ 59 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAI--RKLGSV-----------------DKGTT-RTDT--MELERQRGITIFSAVASF 59 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCc--cccccc-----------------cCCcc-cCCC--chhHhhCCCceeeeeEEE
Confidence 7899999999999999999864332 111110 01111 1110 000000 11111112222
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
.. ...+++||||||+.+ |...+..++..+|.+++|+|+.. ++......+++.+...+.|+++|+||
T Consensus 60 ~~---~~~~i~liDTPG~~~----------f~~~~~~~l~~aD~~IlVvd~~~-g~~~~~~~~~~~~~~~~~P~iivvNK 125 (237)
T cd04168 60 QW---EDTKVNLIDTPGHMD----------FIAEVERSLSVLDGAILVISAVE-GVQAQTRILWRLLRKLNIPTIIFVNK 125 (237)
T ss_pred EE---CCEEEEEEeCCCccc----------hHHHHHHHHHHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 21 125799999999865 33445566889999999999988 67777778888887778999999999
Q ss_pred CCCCC
Q psy13475 257 ADQVK 261 (468)
Q Consensus 257 ~D~v~ 261 (468)
+|+..
T Consensus 126 ~D~~~ 130 (237)
T cd04168 126 IDRAG 130 (237)
T ss_pred ccccC
Confidence 99874
No 72
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.4e-12 Score=140.52 Aligned_cols=138 Identities=21% Similarity=0.233 Sum_probs=96.7
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
+..|+++|+||+|||||+|+|.|.+.. |++. ++.|.++-+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~-VgNw---------------------------------------pGvTVEkke 42 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQK-VGNW---------------------------------------PGVTVEKKE 42 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCce-ecCC---------------------------------------CCeeEEEEE
Confidence 345999999999999999999998653 3333 678888888
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhh--cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFI--DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRI 252 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~--~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iii 252 (468)
+...... ..+.+||.||+.+-..--.. ..+++.++ .++|+|+-|+||+.+ +.-..+--++.+.+.|+++
T Consensus 43 g~~~~~~--~~i~ivDLPG~YSL~~~S~D----E~Var~~ll~~~~D~ivnVvDAtnL---eRnLyltlQLlE~g~p~il 113 (653)
T COG0370 43 GKLKYKG--HEIEIVDLPGTYSLTAYSED----EKVARDFLLEGKPDLIVNVVDATNL---ERNLYLTLQLLELGIPMIL 113 (653)
T ss_pred EEEEecC--ceEEEEeCCCcCCCCCCCch----HHHHHHHHhcCCCCEEEEEcccchH---HHHHHHHHHHHHcCCCeEE
Confidence 8774433 67999999999875332111 24566665 477999999999875 2223344566678899999
Q ss_pred EEeCCCCCC-------hHHHHHHhhhhhhccccccC
Q psy13475 253 ILNKADQVK-------PEELMRVQGTLIWNISPLMS 281 (468)
Q Consensus 253 VlNK~D~v~-------~~el~~v~~~l~~~ls~~~~ 281 (468)
++|++|... .+.|.+..|.-..++++..|
T Consensus 114 aLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g 149 (653)
T COG0370 114 ALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRG 149 (653)
T ss_pred EeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecC
Confidence 999999753 34455554444444444444
No 73
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.40 E-value=1.5e-12 Score=119.18 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=72.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|++++.++..... ||+ |..+... .+
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~~~~~~~~~-----~t~--------------------------------~~~~~~~--~~ 46 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTDKRFQPVHD-----LTI--------------------------------GVEFGAR--MI 46 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCC-----Ccc--------------------------------ceeEEEE--EE
Confidence 59999999999999999999987643211 110 0000000 01
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~iiiV 253 (468)
.. ......+.++||||... +......++..+|++++|+|++....-.....++..++. .+.|+++|
T Consensus 47 ~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv 115 (168)
T cd01866 47 TI-DGKQIKLQIWDTAGQES----------FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLI 115 (168)
T ss_pred EE-CCEEEEEEEEECCCcHH----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 11 11124689999999532 334456667899999999998752111222344444433 35799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+..
T Consensus 116 ~nK~Dl~~ 123 (168)
T cd01866 116 GNKCDLES 123 (168)
T ss_pred EECccccc
Confidence 99999874
No 74
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.40 E-value=2.5e-12 Score=128.19 Aligned_cols=138 Identities=18% Similarity=0.315 Sum_probs=83.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|++|+|||||||+|++..+...+...+ |++.. ...|+.-.....
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~--~~~~~-----------------------------~~~T~~i~~~~~ 54 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPD--PAEEH-----------------------------IDKTVEIKSSKA 54 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCC--ccccc-----------------------------cCCceEEEEEEE
Confidence 49999999999999999999998764322111 00000 011211111111
Q ss_pred ec-CCCCCcceEEEeCCCCchhhhh----------hhhccc--hhHHH---H-Hhh--cccCEEEEEEcCCCCCCCHhHH
Q psy13475 177 QL-PHPLLEKINIVEIPGILEIRKQ----------VERQFP--FNDAC---Q-WFI--DRADIIFLVYDPSKLDVGPETE 237 (468)
Q Consensus 177 ~~-~~~~l~~i~lIDTPGi~~~~~~----------~~r~~d--~~~~~---~-~~~--~~aDlIllV~Da~~~~i~~e~~ 237 (468)
.+ ..+.-..+++|||||+.+.... +...|+ +.+.. + ..+ .++|+++++++++..++.+.+.
T Consensus 55 ~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~ 134 (276)
T cd01850 55 EIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDI 134 (276)
T ss_pred EEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHH
Confidence 11 1222246999999999764321 000000 00000 0 011 2689999999987656777788
Q ss_pred HHHHHHhcCCCcEEEEEeCCCCCChHHHH
Q psy13475 238 AILDQLKGREYQTRIILNKADQVKPEELM 266 (468)
Q Consensus 238 ~ll~~l~~~~~~iiiVlNK~D~v~~~el~ 266 (468)
.+++.+.+ ..|+++|+||+|++..+++.
T Consensus 135 ~~lk~l~~-~v~vi~VinK~D~l~~~e~~ 162 (276)
T cd01850 135 EFMKRLSK-RVNIIPVIAKADTLTPEELK 162 (276)
T ss_pred HHHHHHhc-cCCEEEEEECCCcCCHHHHH
Confidence 88998886 68999999999998766654
No 75
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.39 E-value=4.4e-12 Score=115.18 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=69.9
Q ss_pred EEEeccCCCChhhHHHHHhCCccccccc-CCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSL-RTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~-~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
|+++|.+|+|||||+|+|.+......+. .....|| ....+..+
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t------------------------------------~~~~~~~~ 45 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPT------------------------------------VGLNIGTI 45 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCc------------------------------------cccceEEE
Confidence 7899999999999999998753320000 0000111 00011112
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~iii 252 (468)
... ...+.++||||... +......++..+|++++|+|++....-......+..+. ..+.|+++
T Consensus 46 ~~~---~~~~~l~Dt~G~~~----------~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~il 112 (167)
T cd04160 46 EVG---NARLKFWDLGGQES----------LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLI 112 (167)
T ss_pred EEC---CEEEEEEECCCChh----------hHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEE
Confidence 221 25799999999754 33345566889999999999876321112222333222 23579999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+...
T Consensus 113 v~NK~D~~~~ 122 (167)
T cd04160 113 LANKQDLPDA 122 (167)
T ss_pred EEEccccccC
Confidence 9999998653
No 76
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.39 E-value=1.3e-12 Score=123.78 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=73.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|||||||+|.+++.++... ..||+..- + ....+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~-----~~pt~~~~--------------------------------~--~~~~i 42 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEE-----YIPTEHRR--------------------------------L--YRPAV 42 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcc-----cCCccccc--------------------------------c--ceeEE
Confidence 489999999999999999999877531 22333110 0 00111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh------cCCCcE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK------GREYQT 250 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~------~~~~~i 250 (468)
.. ......+.|+||||........... +.......+..+|++++|+|++....-+....+++.+. ..+.|+
T Consensus 43 ~~-~~~~~~l~i~Dt~G~~~~~~~~~~e--~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pi 119 (198)
T cd04142 43 VL-SGRVYDLHILDVPNMQRYPGTAGQE--WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPI 119 (198)
T ss_pred EE-CCEEEEEEEEeCCCcccCCccchhH--HHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCE
Confidence 11 1112457899999975422111111 12234455789999999999976211111223333332 235799
Q ss_pred EEEEeCCCCCC
Q psy13475 251 RIILNKADQVK 261 (468)
Q Consensus 251 iiVlNK~D~v~ 261 (468)
++|.||+|+..
T Consensus 120 iivgNK~Dl~~ 130 (198)
T cd04142 120 VVVGNKRDQQR 130 (198)
T ss_pred EEEEECccccc
Confidence 99999999964
No 77
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.38 E-value=2e-12 Score=117.67 Aligned_cols=114 Identities=16% Similarity=0.229 Sum_probs=72.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||++.+++..+.... .|+. +.++... ..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~-----~~~~--------------------------------~~~~~~~--~~ 42 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQ-----LSTY--------------------------------ALTLYKH--NA 42 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc-----CCce--------------------------------eeEEEEE--EE
Confidence 4899999999999999999987764211 1110 0111000 01
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC--CCcEEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR--EYQTRIIL 254 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~--~~~iiiVl 254 (468)
.. ......+.++||||... +......++..+|++++|+|++....-.....++..++.. +.|+++|+
T Consensus 43 ~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~ 111 (161)
T cd04124 43 KF-EGKTILVDFWDTAGQER----------FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVA 111 (161)
T ss_pred EE-CCEEEEEEEEeCCCchh----------hhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 11 12124588999999643 3344566789999999999987621112233455555433 57999999
Q ss_pred eCCCCC
Q psy13475 255 NKADQV 260 (468)
Q Consensus 255 NK~D~v 260 (468)
||+|+.
T Consensus 112 nK~Dl~ 117 (161)
T cd04124 112 NKIDLD 117 (161)
T ss_pred ECccCc
Confidence 999985
No 78
>PLN03127 Elongation factor Tu; Provisional
Probab=99.38 E-value=4.3e-12 Score=134.46 Aligned_cols=132 Identities=17% Similarity=0.106 Sum_probs=84.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|+.++|||||+++|.+... ..|.... -.+......+ .++..+.|++.....
T Consensus 63 ni~iiGhvd~GKSTL~~~L~~~~~-----~~g~~~~-~~~~~~D~~~------------------~E~~rGiTi~~~~~~ 118 (447)
T PLN03127 63 NVGTIGHVDHGKTTLTAAITKVLA-----EEGKAKA-VAFDEIDKAP------------------EEKARGITIATAHVE 118 (447)
T ss_pred EEEEECcCCCCHHHHHHHHHhHHH-----Hhhcccc-eeeccccCCh------------------hHhhcCceeeeeEEE
Confidence 399999999999999999975421 1111100 0000011111 111134444432222
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc-EEEEEe
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ-TRIILN 255 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~-iiiVlN 255 (468)
. .....+++||||||+.+ |...+...+..+|++++|+|+.. ++..++.+++..+...+.| +++|+|
T Consensus 119 ~--~~~~~~i~~iDtPGh~~----------f~~~~~~g~~~aD~allVVda~~-g~~~qt~e~l~~~~~~gip~iIvviN 185 (447)
T PLN03127 119 Y--ETAKRHYAHVDCPGHAD----------YVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVVFLN 185 (447)
T ss_pred E--cCCCeEEEEEECCCccc----------hHHHHHHHHhhCCEEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEEEEE
Confidence 2 12236899999999864 33444445677999999999987 6778888888888888888 578899
Q ss_pred CCCCCChHHH
Q psy13475 256 KADQVKPEEL 265 (468)
Q Consensus 256 K~D~v~~~el 265 (468)
|+|+++.+++
T Consensus 186 KiDlv~~~~~ 195 (447)
T PLN03127 186 KVDVVDDEEL 195 (447)
T ss_pred eeccCCHHHH
Confidence 9999865443
No 79
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.38 E-value=2e-12 Score=116.79 Aligned_cols=115 Identities=16% Similarity=0.230 Sum_probs=70.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|++++..+.. . ..||+... +. ...
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~~~~~--~---~~~t~~~~--------------------------------~~---~~~ 43 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQSYFVT--D---YDPTIEDS--------------------------------YT---KQC 43 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCc--c---cCCCccce--------------------------------EE---EEE
Confidence 49999999999999999999876531 1 12222110 00 001
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH----hcCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL----KGREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l----~~~~~~iii 252 (468)
.+ ......+.++||||..+ +......++..+|++++|+|++....-.....++..+ ...+.|+++
T Consensus 44 ~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piii 112 (164)
T cd04145 44 EI-DGQWAILDILDTAGQEE----------FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMIL 112 (164)
T ss_pred EE-CCEEEEEEEEECCCCcc----------hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 11 11124588999999654 3334556678999999999997621111122223332 223579999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+...
T Consensus 113 v~NK~Dl~~~ 122 (164)
T cd04145 113 VGNKADLEHQ 122 (164)
T ss_pred EeeCcccccc
Confidence 9999998653
No 80
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.38 E-value=4.2e-12 Score=116.79 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=70.6
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+++|++|+|||||+|+|.+..+.. ..||. |.. +.
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~------~~~t~--------------------------------g~~----~~ 51 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDT------ISPTL--------------------------------GFQ----IK 51 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC------cCCcc--------------------------------ccc----eE
Confidence 3469999999999999999999875432 11221 100 11
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH----hcCCCcE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL----KGREYQT 250 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l----~~~~~~i 250 (468)
.+.. . ...+.++||||.... ......++..+|++++|+|++....-.+....+..+ ...+.|+
T Consensus 52 ~~~~-~--~~~l~l~D~~G~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 118 (173)
T cd04154 52 TLEY-E--GYKLNIWDVGGQKTL----------RPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATL 118 (173)
T ss_pred EEEE-C--CEEEEEEECCCCHHH----------HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCE
Confidence 1111 1 256899999997542 223445578999999999997631111122222222 1245799
Q ss_pred EEEEeCCCCCC
Q psy13475 251 RIILNKADQVK 261 (468)
Q Consensus 251 iiVlNK~D~v~ 261 (468)
++|+||+|+..
T Consensus 119 iiv~nK~Dl~~ 129 (173)
T cd04154 119 LILANKQDLPG 129 (173)
T ss_pred EEEEECccccc
Confidence 99999999864
No 81
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.38 E-value=2e-12 Score=116.65 Aligned_cols=115 Identities=15% Similarity=0.233 Sum_probs=71.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|||||||+|++++..+... ..||+.. ... ..+
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~-----~~~t~~~--------------------------------~~~---~~~ 42 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGIFVEK-----YDPTIED--------------------------------SYR---KQI 42 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcc-----cCCchhh--------------------------------hEE---EEE
Confidence 589999999999999999998766421 1122210 111 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~iii 252 (468)
.. ......+.|+||||... +......+...+|++++|+|.+....-+....+++.+.. .+.|+++
T Consensus 43 ~~-~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 111 (163)
T cd04136 43 EV-DGQQCMLEILDTAGTEQ----------FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVL 111 (163)
T ss_pred EE-CCEEEEEEEEECCCccc----------cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 11 11124578999999643 223345567899999999998762111222333333332 3579999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+...
T Consensus 112 v~nK~Dl~~~ 121 (163)
T cd04136 112 VGNKCDLEDE 121 (163)
T ss_pred EEECcccccc
Confidence 9999998653
No 82
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.38 E-value=3.7e-12 Score=113.21 Aligned_cols=112 Identities=15% Similarity=0.243 Sum_probs=70.4
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|++|+|||||+|+|.+.++.... .||+. .. +..+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~-----~~t~~--------------------------------~~----~~~~~ 40 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDT-----IPTVG--------------------------------FN----MRKVT 40 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCc-----cCCCC--------------------------------cc----eEEEE
Confidence 789999999999999999998764211 12110 00 11111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCcEEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQTRII 253 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~iiiV 253 (468)
. .. ..+.++||||... +......++..+|++++|+|++....-......+..+. ..+.|+++|
T Consensus 41 ~-~~--~~~~~~D~~g~~~----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 107 (159)
T cd04159 41 K-GN--VTLKVWDLGGQPR----------FRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVL 107 (159)
T ss_pred E-CC--EEEEEEECCCCHh----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEE
Confidence 1 11 4689999999744 22335556889999999999976311111112222221 135799999
Q ss_pred EeCCCCCChH
Q psy13475 254 LNKADQVKPE 263 (468)
Q Consensus 254 lNK~D~v~~~ 263 (468)
+||+|..+..
T Consensus 108 ~nK~D~~~~~ 117 (159)
T cd04159 108 GNKNDLPGAL 117 (159)
T ss_pred EeCccccCCc
Confidence 9999987543
No 83
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.38 E-value=2.4e-12 Score=116.12 Aligned_cols=115 Identities=19% Similarity=0.264 Sum_probs=72.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|++|+|||||+|+|++.++.. . ..|+. +..-....+
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~---~--~~~~~----------------------------------~~~~~~~~~ 42 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE---Q--YKSTI----------------------------------GVDFKTKTI 42 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---C--CCCce----------------------------------eeEEEEEEE
Confidence 38999999999999999999987642 1 11110 000011111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~iiiV 253 (468)
.. ......+.++||||... +......++..+|++++|+|++....-+....++..+.. .+.|+++|
T Consensus 43 ~~-~~~~~~~~l~D~~G~~~----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv 111 (164)
T smart00175 43 EV-DGKRVKLQIWDTAGQER----------FRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLV 111 (164)
T ss_pred EE-CCEEEEEEEEECCChHH----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 11 11113688999999543 334456668899999999999763211222234444332 35799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+..
T Consensus 112 ~nK~D~~~ 119 (164)
T smart00175 112 GNKSDLED 119 (164)
T ss_pred EEchhccc
Confidence 99999875
No 84
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.38 E-value=2.8e-12 Score=122.72 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=71.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee-eEE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR-LRG 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~-i~~ 175 (468)
.|+++|.+|+|||||+|.|++..+.. ...||.. .+. ...
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~-----~~~~T~~-----------------------------------~d~~~~~ 41 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGK-----SYKQTIG-----------------------------------LDFFSKR 41 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC-----CCCCcee-----------------------------------EEEEEEE
Confidence 38999999999999999999876641 1112210 011 112
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc------CCCc
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG------REYQ 249 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~------~~~~ 249 (468)
+.+++.....+.|+||||... +......++..+|++++|+|.+....-.....++..+.. ...|
T Consensus 42 i~~~~~~~~~~~i~Dt~G~~~----------~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~p 111 (215)
T cd04109 42 VTLPGNLNVTLQVWDIGGQSI----------GGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPL 111 (215)
T ss_pred EEeCCCCEEEEEEEECCCcHH----------HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCce
Confidence 232222235688999999543 223345568899999999999863211222233333332 2347
Q ss_pred EEEEEeCCCCCC
Q psy13475 250 TRIILNKADQVK 261 (468)
Q Consensus 250 iiiVlNK~D~v~ 261 (468)
+++|.||+|+..
T Consensus 112 iilVgNK~DL~~ 123 (215)
T cd04109 112 VVLVGNKTDLEH 123 (215)
T ss_pred EEEEEECccccc
Confidence 899999999874
No 85
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.38 E-value=2.5e-12 Score=116.68 Aligned_cols=115 Identities=21% Similarity=0.267 Sum_probs=71.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++.++.... .||+. ..+ ....+
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~~~~~~~-----~~t~~--------------------------------~~~--~~~~~ 45 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNEFNLDS-----KSTIG--------------------------------VEF--ATRSI 45 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC-----CCccc--------------------------------eEE--EEEEE
Confidence 5999999999999999999998765321 12211 000 00111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~iiiV 253 (468)
... .....+.++||||... +......++..+|++++|+|++....-.....++..+.. .+.|+++|
T Consensus 46 ~~~-~~~~~~~l~D~~g~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv 114 (165)
T cd01868 46 QID-GKTIKAQIWDTAGQER----------YRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLV 114 (165)
T ss_pred EEC-CEEEEEEEEeCCChHH----------HHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 111 1113588999999643 223345567899999999999752211222234443332 34799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+..
T Consensus 115 ~nK~Dl~~ 122 (165)
T cd01868 115 GNKSDLRH 122 (165)
T ss_pred EECccccc
Confidence 99999864
No 86
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.37 E-value=2.7e-12 Score=116.78 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=72.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+..... ||. +.......+
T Consensus 5 kv~vvG~~~~GKTsli~~l~~~~~~~~~~-----~t~----------------------------------~~~~~~~~~ 45 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRFKSGTFSERQG-----NTI----------------------------------GVDFTMKTL 45 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCcccCC-----Ccc----------------------------------ceEEEEEEE
Confidence 59999999999999999998876542110 110 000111122
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~iiiV 253 (468)
... .....+.|+||||... +......++..+|++++|+|++....-.....++..+.. .+.|+++|
T Consensus 46 ~~~-~~~~~l~i~D~~G~~~----------~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv 114 (165)
T cd01864 46 EIE-GKRVKLQIWDTAGQER----------FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLI 114 (165)
T ss_pred EEC-CEEEEEEEEECCChHH----------HHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEE
Confidence 211 1113689999999532 334455667899999999999873211222344444432 35689999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
.||+|+...
T Consensus 115 ~nK~Dl~~~ 123 (165)
T cd01864 115 GNKCDLEEQ 123 (165)
T ss_pred EECcccccc
Confidence 999998744
No 87
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.37 E-value=4.2e-12 Score=114.82 Aligned_cols=110 Identities=19% Similarity=0.237 Sum_probs=69.2
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|.+|+|||||+|+|...++.. ..||. +.+. ..+.
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~~~~------~~~t~--------------------------------~~~~----~~~~ 39 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVT------TIPTI--------------------------------GFNV----ETVT 39 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCCCcC------cCCcc--------------------------------CcCe----EEEE
Confidence 7899999999999999997765421 11221 1110 0111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH-HHHHHHHhc---CCCcEEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET-EAILDQLKG---REYQTRII 253 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~-~~ll~~l~~---~~~~iiiV 253 (468)
. . ...+.++||||... +......++..+|++++|+|++....-... ..+...++. .+.|+++|
T Consensus 40 ~-~--~~~~~i~Dt~G~~~----------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv 106 (158)
T cd04151 40 Y-K--NLKFQVWDLGGQTS----------IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVF 106 (158)
T ss_pred E-C--CEEEEEEECCCCHH----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEE
Confidence 1 1 25689999999864 233455668899999999998763111111 222222222 35799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 107 ~nK~Dl~~~ 115 (158)
T cd04151 107 ANKQDMPGA 115 (158)
T ss_pred EeCCCCCCC
Confidence 999998743
No 88
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.37 E-value=4.9e-12 Score=118.11 Aligned_cols=112 Identities=20% Similarity=0.255 Sum_probs=70.9
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+...|+++|.+|||||||+|.|.+..+..+ .||.. .+ .
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~------~~t~~--------------------------------~~-~--- 53 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH------QPTQH--------------------------------PT-S--- 53 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc------CCccc--------------------------------cc-e---
Confidence 446799999999999999999999766421 22211 00 0
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH-h---cCCCc
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL-K---GREYQ 249 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l-~---~~~~~ 249 (468)
..+.. . ...+.++||||..... .....++..+|++++|+|++..+--.+....+..+ . ..+.|
T Consensus 54 ~~~~~-~--~~~~~~~D~~G~~~~~----------~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p 120 (184)
T smart00178 54 EELAI-G--NIKFTTFDLGGHQQAR----------RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP 120 (184)
T ss_pred EEEEE-C--CEEEEEEECCCCHHHH----------HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC
Confidence 01111 1 1468999999986432 22345578999999999997621111122222222 2 13579
Q ss_pred EEEEEeCCCCC
Q psy13475 250 TRIILNKADQV 260 (468)
Q Consensus 250 iiiVlNK~D~v 260 (468)
+++|+||+|+.
T Consensus 121 iliv~NK~Dl~ 131 (184)
T smart00178 121 FLILGNKIDAP 131 (184)
T ss_pred EEEEEeCcccc
Confidence 99999999985
No 89
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.37 E-value=2.7e-12 Score=115.16 Aligned_cols=114 Identities=14% Similarity=0.224 Sum_probs=70.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++.++... ..||+.. .+. ..+
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~~~-----~~~t~~~--------------------------------~~~---~~~ 42 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFVDE-----YDPTIED--------------------------------SYR---KQV 42 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcCC-----cCCcchh--------------------------------eEE---EEE
Confidence 589999999999999999998876421 1122210 100 011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~iii 252 (468)
.+ ......+.++||||... +......++..+|.+++|+|.+....-.....++..+. ..+.|+++
T Consensus 43 ~~-~~~~~~~~i~Dt~G~~~----------~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiv 111 (162)
T cd04138 43 VI-DGETCLLDILDTAGQEE----------YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVL 111 (162)
T ss_pred EE-CCEEEEEEEEECCCCcc----------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 11 11123477899999643 23345556888999999999875210011222223222 34579999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+..
T Consensus 112 v~nK~Dl~~ 120 (162)
T cd04138 112 VGNKCDLAA 120 (162)
T ss_pred EEECccccc
Confidence 999999875
No 90
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.37 E-value=4e-12 Score=126.16 Aligned_cols=133 Identities=20% Similarity=0.269 Sum_probs=81.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccc-cccceeeeEE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKF-GQGLLDRLRG 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~f-g~tt~~~i~~ 175 (468)
.|+++|++|+|||||+|+|+...-.+ .+.|... + ..-.|++ ..|+. ..++. +.+.......
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i--~~~g~v~----------~---~~~~~~t-~~D~~--~~e~~rg~si~~~~~~ 65 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAI--REAGAVK----------A---RKSRKHA-TSDWM--EIEKQRGISVTSSVMQ 65 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCc--ccCceec----------c---cccCCCc-cCCCc--HHHHhCCCCeEEEEEE
Confidence 59999999999999999999753332 1111100 0 0001222 12221 11100 1111111222
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEe
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILN 255 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlN 255 (468)
+.. ....+.||||||..+ |...+...+..+|++++|+|++. ++......+++.+...+.|+++++|
T Consensus 66 ~~~---~~~~i~liDTPG~~d----------f~~~~~~~l~~aD~~IlVvda~~-g~~~~~~~i~~~~~~~~~P~iivvN 131 (267)
T cd04169 66 FEY---RDCVINLLDTPGHED----------FSEDTYRTLTAVDSAVMVIDAAK-GVEPQTRKLFEVCRLRGIPIITFIN 131 (267)
T ss_pred Eee---CCEEEEEEECCCchH----------HHHHHHHHHHHCCEEEEEEECCC-CccHHHHHHHHHHHhcCCCEEEEEE
Confidence 221 236799999999865 33445566789999999999987 5666666777777777889999999
Q ss_pred CCCCCC
Q psy13475 256 KADQVK 261 (468)
Q Consensus 256 K~D~v~ 261 (468)
|+|...
T Consensus 132 K~D~~~ 137 (267)
T cd04169 132 KLDREG 137 (267)
T ss_pred CCccCC
Confidence 999764
No 91
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.37 E-value=7.2e-12 Score=136.63 Aligned_cols=116 Identities=20% Similarity=0.238 Sum_probs=81.4
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
.+.|.|+++|.+|+|||||+|+|.+..+.... . ++.|.+.
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e-~---------------------------------------~GIT~~i 124 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGE-A---------------------------------------GGITQHI 124 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccc-C---------------------------------------Cceeecc
Confidence 37789999999999999999999987664211 1 1111110
Q ss_pred -eEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEE
Q psy13475 173 -LRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTR 251 (468)
Q Consensus 173 -i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ii 251 (468)
...+.+.+ ...++||||||+.+.. ......+..+|++++|+|++. +...+..+.+..++..+.|++
T Consensus 125 g~~~v~~~~--~~~i~~iDTPGhe~F~----------~~r~rga~~aDiaILVVda~d-gv~~qT~e~i~~~~~~~vPiI 191 (587)
T TIGR00487 125 GAYHVENED--GKMITFLDTPGHEAFT----------SMRARGAKVTDIVVLVVAADD-GVMPQTIEAISHAKAANVPII 191 (587)
T ss_pred eEEEEEECC--CcEEEEEECCCCcchh----------hHHHhhhccCCEEEEEEECCC-CCCHhHHHHHHHHHHcCCCEE
Confidence 01111111 1379999999986532 223344788999999999987 566777777777777778999
Q ss_pred EEEeCCCCCC
Q psy13475 252 IILNKADQVK 261 (468)
Q Consensus 252 iVlNK~D~v~ 261 (468)
+++||+|+.+
T Consensus 192 VviNKiDl~~ 201 (587)
T TIGR00487 192 VAINKIDKPE 201 (587)
T ss_pred EEEECccccc
Confidence 9999999863
No 92
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.37 E-value=3e-12 Score=116.49 Aligned_cols=116 Identities=19% Similarity=0.291 Sum_probs=71.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|++++.++... ..||.. ..+ ....+
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~~-----~~~t~~--------------------------------~~~--~~~~~ 44 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTES-----YISTIG--------------------------------VDF--KIRTI 44 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-----CCCccc--------------------------------eeE--EEEEE
Confidence 489999999999999999998876421 111110 000 01111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~iiiV 253 (468)
.. ......+.++||||... +......++..+|++++|+|++....-.+...++..+.. .+.|+++|
T Consensus 45 ~~-~~~~~~~~i~D~~G~~~----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv 113 (166)
T cd01869 45 EL-DGKTIKLQIWDTAGQER----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 113 (166)
T ss_pred EE-CCEEEEEEEEECCCcHh----------HHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEE
Confidence 11 11124588999999543 233455668899999999999763211222233333332 34699999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
.||+|+...
T Consensus 114 ~nK~Dl~~~ 122 (166)
T cd01869 114 GNKCDLTDK 122 (166)
T ss_pred EEChhcccc
Confidence 999998643
No 93
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.36 E-value=3e-12 Score=120.12 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=71.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|.+.+.++... . ..||+ +..+.... +
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~-~---~~~t~--------------------------------~~~~~~~~--~ 43 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNG-N---FIATV--------------------------------GIDFRNKV--V 43 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcc-C---cCCcc--------------------------------cceeEEEE--E
Confidence 489999999999999999998766311 0 01111 11111111 1
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.. ......+.|+||||... +......++..+|++++|+|++....-++...++..+. ....|+++|
T Consensus 44 ~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv 112 (191)
T cd04112 44 TV-DGVKVKLQIWDTAGQER----------FRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLL 112 (191)
T ss_pred EE-CCEEEEEEEEeCCCcHH----------HHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 11 11124688999999533 23334556789999999999976321112233333333 235799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+..
T Consensus 113 ~NK~Dl~~ 120 (191)
T cd04112 113 GNKADMSG 120 (191)
T ss_pred EEcccchh
Confidence 99999864
No 94
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.36 E-value=3.5e-12 Score=115.13 Aligned_cols=115 Identities=20% Similarity=0.281 Sum_probs=71.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++.++.. . ..||.. ..+ ....+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~---~--~~~t~~--------------------------------~~~--~~~~~ 42 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS---K--YLPTIG--------------------------------IDY--GVKKV 42 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---C--CCCccc--------------------------------eeE--EEEEE
Confidence 48999999999999999999987642 1 112110 000 00111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----c----CCC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----G----REY 248 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~----~~~ 248 (468)
.. ......+.|+||||... +......+...+|++++|+|.+....-+....++..+. . ...
T Consensus 43 ~~-~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 111 (168)
T cd04119 43 SV-RNKEVRVNFFDLSGHPE----------YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENI 111 (168)
T ss_pred EE-CCeEEEEEEEECCccHH----------HHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCc
Confidence 11 12225689999999743 22334556789999999999976311112223333332 1 346
Q ss_pred cEEEEEeCCCCCC
Q psy13475 249 QTRIILNKADQVK 261 (468)
Q Consensus 249 ~iiiVlNK~D~v~ 261 (468)
|+++|.||+|+..
T Consensus 112 piilv~nK~Dl~~ 124 (168)
T cd04119 112 VVVVCANKIDLTK 124 (168)
T ss_pred eEEEEEEchhccc
Confidence 8999999999873
No 95
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.36 E-value=3.3e-12 Score=115.47 Aligned_cols=115 Identities=17% Similarity=0.244 Sum_probs=72.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++.++...... +. +..+... .+
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~-----~~--------------------------------~~~~~~~--~~ 42 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQH-----TI--------------------------------GVEFGSK--II 42 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC-----ce--------------------------------eeeEEEE--EE
Confidence 389999999999999999998876421111 10 0000000 01
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH---hcCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL---KGREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l---~~~~~~iiiV 253 (468)
.. ......+.|+||||... +......++..+|.+++|+|++....-.....++..+ ...+.|+++|
T Consensus 43 ~~-~~~~~~l~l~D~~G~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv 111 (161)
T cd04113 43 RV-GGKRVKLQIWDTAGQER----------FRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILV 111 (161)
T ss_pred EE-CCEEEEEEEEECcchHH----------HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 11 11124688999999643 3334556688999999999998632112223343333 3346799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+..
T Consensus 112 ~nK~D~~~ 119 (161)
T cd04113 112 GNKSDLAD 119 (161)
T ss_pred EEchhcch
Confidence 99999874
No 96
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.36 E-value=5.2e-12 Score=120.84 Aligned_cols=66 Identities=24% Similarity=0.351 Sum_probs=51.3
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
..+.+|||||..+ |...+..++..+|++++|+|+.. ..+.....++..+...+.|+++|+||+|.+
T Consensus 71 ~~i~iiDtpG~~~----------f~~~~~~~~~~aD~~llVvD~~~-~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 71 YLFNIIDTPGHVN----------FMDEVAAALRLSDGVVLVVDVVE-GVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEECCCCcc----------hHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 5699999999865 33445566889999999999987 455555566666655568999999999986
No 97
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.36 E-value=4.4e-12 Score=138.17 Aligned_cols=130 Identities=17% Similarity=0.281 Sum_probs=81.2
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCcee--EEEecCCCCccccCcccccCcccccccccccccee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYF--NILSWGESPTILDGTQLAADWTFSGLQKFGQGLLD 171 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~--~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~ 171 (468)
|.|.|+++|++|+|||||||+|.+..+.. ...| -+|..+ +.+.... ......
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~--~e~g--giTq~iG~~~v~~~~----------------------~~~~~~ 56 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAK--REAG--GITQHIGATEIPMDV----------------------IEGICG 56 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccc--ccCC--ceecccCeeEeeecc----------------------cccccc
Confidence 78999999999999999999999986642 1110 011100 0000000 000000
Q ss_pred ee-EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcE
Q psy13475 172 RL-RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQT 250 (468)
Q Consensus 172 ~i-~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~i 250 (468)
.. ....+ .....+++|+||||+.. |......++..+|++++|+|++. +...+..+.+..+...+.|+
T Consensus 57 ~~~~~~~v-~~~~~~l~~iDTpG~e~----------f~~l~~~~~~~aD~~IlVvD~~~-g~~~qt~e~i~~l~~~~vpi 124 (590)
T TIGR00491 57 DLLKKFKI-RLKIPGLLFIDTPGHEA----------FTNLRKRGGALADLAILIVDINE-GFKPQTQEALNILRMYKTPF 124 (590)
T ss_pred cccccccc-ccccCcEEEEECCCcHh----------HHHHHHHHHhhCCEEEEEEECCc-CCCHhHHHHHHHHHHcCCCE
Confidence 00 00000 01123599999999754 22333445789999999999987 56677777777777777899
Q ss_pred EEEEeCCCCCC
Q psy13475 251 RIILNKADQVK 261 (468)
Q Consensus 251 iiVlNK~D~v~ 261 (468)
++|+||+|+..
T Consensus 125 IVv~NK~Dl~~ 135 (590)
T TIGR00491 125 VVAANKIDRIP 135 (590)
T ss_pred EEEEECCCccc
Confidence 99999999873
No 98
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.36 E-value=4e-12 Score=114.48 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=71.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.. +..|++. +.....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~-----~~~~~~~------------------------------------~~~~~~ 40 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVE-----DYEPTKA------------------------------------DSYRKK 40 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcc-----ccCCcch------------------------------------hhEEEE
Confidence 48999999999999999999876641 1122211 111111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~iii 252 (468)
.........+.++||||... +......++..+|.+++|+|.+....-.........+. ..+.|+++
T Consensus 41 ~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piii 110 (164)
T cd04139 41 VVLDGEDVQLNILDTAGQED----------YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLL 110 (164)
T ss_pred EEECCEEEEEEEEECCChhh----------hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 11122224588999999654 33445667889999999999865210011222222222 24689999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+..
T Consensus 111 v~NK~D~~~ 119 (164)
T cd04139 111 VGNKCDLED 119 (164)
T ss_pred EEEcccccc
Confidence 999999875
No 99
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.35 E-value=4.5e-12 Score=118.75 Aligned_cols=113 Identities=17% Similarity=0.251 Sum_probs=69.9
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|.+|+|||||+|+|++..+... ..||+. ..+. ..+.
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~f~~~-----~~~t~~--------------------------------~~~~---~~~~ 41 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVET-----YDPTIE--------------------------------DSYR---KQVV 41 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcc-----CCCchH--------------------------------hhEE---EEEE
Confidence 78999999999999999998766421 112211 0111 1111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc------CCCcEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG------REYQTR 251 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~------~~~~ii 251 (468)
. ......+.|+||||... +......++..+|++++|+|.+....-+....+++.+.. ...|++
T Consensus 42 ~-~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii 110 (190)
T cd04144 42 V-DGQPCMLEVLDTAGQEE----------YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIM 110 (190)
T ss_pred E-CCEEEEEEEEECCCchh----------hHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEE
Confidence 1 11113588999999643 223344568899999999998762111222334443321 346999
Q ss_pred EEEeCCCCCC
Q psy13475 252 IILNKADQVK 261 (468)
Q Consensus 252 iVlNK~D~v~ 261 (468)
+|.||+|+..
T Consensus 111 lvgNK~Dl~~ 120 (190)
T cd04144 111 IVGNKCDKVY 120 (190)
T ss_pred EEEEChhccc
Confidence 9999999864
No 100
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.35 E-value=6.9e-12 Score=113.02 Aligned_cols=112 Identities=20% Similarity=0.206 Sum_probs=69.0
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|.+|||||||+|.|.+..... ....||. |.+ ...+ .
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~----~~~~~t~--------------------------------g~~-~~~~---~ 41 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQS----QIIVPTV--------------------------------GFN-VESF---E 41 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCc----ceecCcc--------------------------------ccc-eEEE---E
Confidence 7899999999999999999864311 1112221 100 1111 1
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH------hcCCCcEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL------KGREYQTR 251 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l------~~~~~~ii 251 (468)
.....+.++||||... +......++..+|++++|+|++...--......+..+ ...+.|++
T Consensus 42 ---~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 108 (162)
T cd04157 42 ---KGNLSFTAFDMSGQGK----------YRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPIL 108 (162)
T ss_pred ---ECCEEEEEEECCCCHh----------hHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEE
Confidence 1125689999999754 2233455678999999999997621001111222222 12357999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|+||+|+...
T Consensus 109 iv~NK~Dl~~~ 119 (162)
T cd04157 109 FFANKMDLPDA 119 (162)
T ss_pred EEEeCccccCC
Confidence 99999998753
No 101
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.35 E-value=4.3e-12 Score=121.41 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=71.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|.|++..+...+. ||+ +..+.. ..+
T Consensus 4 KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-----~ti--------------------------------~~d~~~--~~i 44 (211)
T cd04111 4 RLIVIGDSTVGKSSLLKRFTEGRFAEVSD-----PTV--------------------------------GVDFFS--RLI 44 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCC-----cee--------------------------------ceEEEE--EEE
Confidence 49999999999999999999987753221 111 000000 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~iii 252 (468)
.+.......+.++||||... +......++..+|++++|+|.+....-+....++..+. ....|+++
T Consensus 45 ~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iil 114 (211)
T cd04111 45 EIEPGVRIKLQLWDTAGQER----------FRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFIL 114 (211)
T ss_pred EECCCCEEEEEEEeCCcchh----------HHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 11122224688999999543 33445566889999999999976321122223333332 23457889
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|.||+|+..
T Consensus 115 vgNK~Dl~~ 123 (211)
T cd04111 115 VGHKCDLES 123 (211)
T ss_pred EEEcccccc
Confidence 999999875
No 102
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.35 E-value=1.1e-11 Score=117.81 Aligned_cols=72 Identities=22% Similarity=0.167 Sum_probs=51.0
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC-CcEEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE-YQTRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~-~~iiiVlNK~D~v~~ 262 (468)
..++||||||... |...+...+..+|++++|+|+.......+....+..+...+ .|+++|+||+|+.+.
T Consensus 83 ~~i~~iDtPG~~~----------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~ 152 (203)
T cd01888 83 RHVSFVDCPGHEI----------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE 152 (203)
T ss_pred cEEEEEECCChHH----------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH
Confidence 6799999999532 44455666788999999999986333444444555444333 478999999999875
Q ss_pred HHH
Q psy13475 263 EEL 265 (468)
Q Consensus 263 ~el 265 (468)
.++
T Consensus 153 ~~~ 155 (203)
T cd01888 153 EQA 155 (203)
T ss_pred HHH
Confidence 543
No 103
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.35 E-value=6.7e-12 Score=113.18 Aligned_cols=110 Identities=23% Similarity=0.285 Sum_probs=69.7
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|.+|+|||||+|++.+.++.. ..||+. .+ +..+.
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~------~~~t~~--------------------------------~~----~~~~~ 39 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVT------TIPTVG--------------------------------FN----VEMLQ 39 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCccc------ccCccC--------------------------------cc----eEEEE
Confidence 7899999999999999999987632 122211 01 11111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHH-HHhc---CCCcEEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILD-QLKG---REYQTRII 253 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~-~l~~---~~~~iiiV 253 (468)
.+. ...+.++||||... +......++..+|++++|+|++....-.+....+. .++. .+.|+++|
T Consensus 40 ~~~--~~~l~i~D~~G~~~----------~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 107 (160)
T cd04156 40 LEK--HLSLTVWDVGGQEK----------MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLL 107 (160)
T ss_pred eCC--ceEEEEEECCCCHh----------HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEE
Confidence 111 25699999999753 22334455789999999999976321122222222 2221 45799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+..
T Consensus 108 ~nK~Dl~~ 115 (160)
T cd04156 108 ANKQDLPG 115 (160)
T ss_pred EECccccc
Confidence 99999854
No 104
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.35 E-value=1.8e-11 Score=118.43 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=58.9
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhh--cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFI--DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~--~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||+... ...+...+ ..+|++++|+|+.. +..+.+.+++..+...+.|+++|+||+|+.+
T Consensus 84 ~~i~liDtpG~~~~----------~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 84 KLVTFIDLAGHERY----------LKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALALNIPVFVVVTKIDLAP 152 (224)
T ss_pred cEEEEEECCCcHHH----------HHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 57999999997542 22233333 37899999999987 6788888999999888899999999999987
Q ss_pred hHHHHHHhh
Q psy13475 262 PEELMRVQG 270 (468)
Q Consensus 262 ~~el~~v~~ 270 (468)
.+++.+...
T Consensus 153 ~~~~~~~~~ 161 (224)
T cd04165 153 ANILQETLK 161 (224)
T ss_pred HHHHHHHHH
Confidence 665544433
No 105
>PRK00049 elongation factor Tu; Reviewed
Probab=99.35 E-value=7e-12 Score=131.15 Aligned_cols=131 Identities=16% Similarity=0.104 Sum_probs=83.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|++++|||||+++|++.... .|... ...+..+.+.+ -+...+.|++.....
T Consensus 14 ni~iiGhvd~GKSTL~~~L~~~~~~-----~g~~~-~~~~~~~d~~~------------------~E~~rg~Ti~~~~~~ 69 (396)
T PRK00049 14 NVGTIGHVDHGKTTLTAAITKVLAK-----KGGAE-AKAYDQIDKAP------------------EEKARGITINTAHVE 69 (396)
T ss_pred EEEEEeECCCCHHHHHHHHHHhhhh-----ccCCc-ccchhhccCCh------------------HHHhcCeEEeeeEEE
Confidence 3999999999999999999984211 11000 00000011111 111123343332212
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEE-EEEe
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTR-IILN 255 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ii-iVlN 255 (468)
. .....+++||||||+.+ |...+...+..+|++++|+|+.. ++...+.+++..+...+.|.+ +++|
T Consensus 70 ~--~~~~~~i~~iDtPG~~~----------f~~~~~~~~~~aD~~llVVDa~~-g~~~qt~~~~~~~~~~g~p~iiVvvN 136 (396)
T PRK00049 70 Y--ETEKRHYAHVDCPGHAD----------YVKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVVFLN 136 (396)
T ss_pred E--cCCCeEEEEEECCCHHH----------HHHHHHhhhccCCEEEEEEECCC-CCchHHHHHHHHHHHcCCCEEEEEEe
Confidence 2 12236799999999853 44455566889999999999987 677888888888887788876 5899
Q ss_pred CCCCCChHH
Q psy13475 256 KADQVKPEE 264 (468)
Q Consensus 256 K~D~v~~~e 264 (468)
|+|+++.++
T Consensus 137 K~D~~~~~~ 145 (396)
T PRK00049 137 KCDMVDDEE 145 (396)
T ss_pred ecCCcchHH
Confidence 999986444
No 106
>PRK12735 elongation factor Tu; Reviewed
Probab=99.35 E-value=7.8e-12 Score=130.79 Aligned_cols=131 Identities=16% Similarity=0.106 Sum_probs=80.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|++++|||||+|+|++.-. ..|... ...+..... ..-++..+.|.+.....
T Consensus 14 ~i~iiGhvd~GKSTL~~~L~~~~~-----~~g~~~-~~~~~~~d~------------------~~~E~~rGiT~~~~~~~ 69 (396)
T PRK12735 14 NVGTIGHVDHGKTTLTAAITKVLA-----KKGGGE-AKAYDQIDN------------------APEEKARGITINTSHVE 69 (396)
T ss_pred EEEEECcCCCCHHHHHHHHHHhhh-----hcCCcc-cchhhhccC------------------ChhHHhcCceEEEeeeE
Confidence 399999999999999999997311 011000 000000000 00011123333321111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEE-EEEe
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTR-IILN 255 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ii-iVlN 255 (468)
. .....+++||||||+.+ |...+...+..+|++++|+|+.. +...++.+.+..+...+.|.+ +|+|
T Consensus 70 ~--~~~~~~i~~iDtPGh~~----------f~~~~~~~~~~aD~~llVvda~~-g~~~qt~e~l~~~~~~gi~~iivvvN 136 (396)
T PRK12735 70 Y--ETANRHYAHVDCPGHAD----------YVKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVVFLN 136 (396)
T ss_pred E--cCCCcEEEEEECCCHHH----------HHHHHHhhhccCCEEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEEEEE
Confidence 1 12236799999999743 44555566889999999999987 566777777777777777855 5799
Q ss_pred CCCCCChHH
Q psy13475 256 KADQVKPEE 264 (468)
Q Consensus 256 K~D~v~~~e 264 (468)
|+|+.+.++
T Consensus 137 K~Dl~~~~~ 145 (396)
T PRK12735 137 KCDMVDDEE 145 (396)
T ss_pred ecCCcchHH
Confidence 999986443
No 107
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.35 E-value=4.7e-12 Score=115.40 Aligned_cols=114 Identities=17% Similarity=0.238 Sum_probs=72.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|++++..+.. ...||+ +.+++..+
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~-----~~~~t~--------------------------------~~~~~~~~--- 42 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRE-----SYIPTI--------------------------------EDTYRQVI--- 42 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-----CcCCcc--------------------------------hheEEEEE---
Confidence 48999999999999999999887632 111221 11221111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc------CCCcE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG------REYQT 250 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~------~~~~i 250 (468)
.. ......+.++||||... +......+...+|++++|+|.+....-++...+++.++. .+.|+
T Consensus 43 ~~-~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi 111 (165)
T cd04140 43 SC-SKNICTLQITDTTGSHQ----------FPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPI 111 (165)
T ss_pred EE-CCEEEEEEEEECCCCCc----------chHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCE
Confidence 11 11124688999999754 223345567889999999999763211223334333332 34799
Q ss_pred EEEEeCCCCCC
Q psy13475 251 RIILNKADQVK 261 (468)
Q Consensus 251 iiVlNK~D~v~ 261 (468)
++|.||+|+..
T Consensus 112 ilv~nK~Dl~~ 122 (165)
T cd04140 112 MLVGNKCDESH 122 (165)
T ss_pred EEEEECccccc
Confidence 99999999865
No 108
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.35 E-value=1.9e-11 Score=136.39 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=85.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|++|+|||||+|+|++..-.+ .+.|. +.+|++ ..| +...++..++|++....
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~--~~~~~-----------------~~~g~~-~~D--~~~~e~~rgiti~~~~~ 68 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRI--HKIGE-----------------VHDGAA-TMD--WMEQEKERGITITSAAT 68 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCc--ccccc-----------------ccCCcc-ccC--CCHHHHhcCCCEecceE
Confidence 369999999999999999998643221 11110 001111 111 11122223344433222
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEe
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILN 255 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlN 255 (468)
..... ..+++||||||+.+. ...+..++..+|++++|+|+.. +...+...++..+...+.|+++|+|
T Consensus 69 ~~~~~--~~~i~liDTPG~~~~----------~~~~~~~l~~~D~~ilVvda~~-g~~~~~~~~~~~~~~~~~p~ivviN 135 (689)
T TIGR00484 69 TVFWK--GHRINIIDTPGHVDF----------TVEVERSLRVLDGAVAVLDAVG-GVQPQSETVWRQANRYEVPRIAFVN 135 (689)
T ss_pred EEEEC--CeEEEEEECCCCcch----------hHHHHHHHHHhCEEEEEEeCCC-CCChhHHHHHHHHHHcCCCEEEEEE
Confidence 22112 268999999999753 2335566889999999999987 6677778888888888899999999
Q ss_pred CCCCCC
Q psy13475 256 KADQVK 261 (468)
Q Consensus 256 K~D~v~ 261 (468)
|+|+..
T Consensus 136 K~D~~~ 141 (689)
T TIGR00484 136 KMDKTG 141 (689)
T ss_pred CCCCCC
Confidence 999885
No 109
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.34 E-value=5.9e-12 Score=113.66 Aligned_cols=114 Identities=22% Similarity=0.340 Sum_probs=70.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|++|+|||||+|+|++..+... . .|+. +.++ ....+
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~---~--~~~~--------------------------------~~~~--~~~~~ 42 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD---L--AATI--------------------------------GVDF--KVKTL 42 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc---c--CCcc--------------------------------cceE--EEEEE
Confidence 489999999999999999998876421 1 1111 0111 01111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~iii 252 (468)
.. +.....+.++||||... +......+++.+|++++|+|++....-.....++..+. ..+.|+++
T Consensus 43 ~~-~~~~~~~~l~D~~g~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~i 111 (161)
T cd01863 43 TV-DGKKVKLAIWDTAGQER----------FRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKML 111 (161)
T ss_pred EE-CCEEEEEEEEECCCchh----------hhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEE
Confidence 11 12224689999999643 22334556789999999999876211111222333332 34578999
Q ss_pred EEeCCCCC
Q psy13475 253 ILNKADQV 260 (468)
Q Consensus 253 VlNK~D~v 260 (468)
|.||+|+.
T Consensus 112 v~nK~D~~ 119 (161)
T cd01863 112 VGNKIDKE 119 (161)
T ss_pred EEECCccc
Confidence 99999987
No 110
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.34 E-value=5.8e-12 Score=115.04 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=71.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|++.+.++... ..||+. ..+ ....+
T Consensus 5 ki~vvG~~~~GKSsl~~~~~~~~f~~~-----~~~t~~--------------------------------~~~--~~~~~ 45 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSEDSFNPS-----FISTIG--------------------------------IDF--KIRTI 45 (167)
T ss_pred EEEEECCCCCCHHHHHHHHhhCcCCcc-----cccCcc--------------------------------ceE--EEEEE
Confidence 599999999999999999998876421 112110 000 11111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~iiiV 253 (468)
... .....+.++||||... +......++..+|++++|+|++....-.+...++..+.. .+.|+++|
T Consensus 46 ~~~-~~~~~l~l~D~~g~~~----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv 114 (167)
T cd01867 46 ELD-GKKIKLQIWDTAGQER----------FRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLV 114 (167)
T ss_pred EEC-CEEEEEEEEeCCchHH----------HHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEE
Confidence 111 1124688999999543 223345567899999999998762111122233433332 35699999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+.+
T Consensus 115 ~nK~Dl~~ 122 (167)
T cd01867 115 GNKCDMEE 122 (167)
T ss_pred EECccccc
Confidence 99999974
No 111
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.34 E-value=1e-11 Score=124.63 Aligned_cols=125 Identities=20% Similarity=0.269 Sum_probs=78.6
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
....|+++|.+|+||||++|+|+|++++.++... ++ +.....
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~---s~-----------------------------------t~~~~~ 78 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ---SE-----------------------------------GLRPMM 78 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCC---Cc-----------------------------------ceeEEE
Confidence 3447999999999999999999999886543221 11 111111
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhh--cccCEEEEEEcCCCCCCCHhHHHHHHHHhcC-----
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFI--DRADIIFLVYDPSKLDVGPETEAILDQLKGR----- 246 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~--~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~----- 246 (468)
.... .....+.+|||||+.+... .++. ..+.++.++ ...|+||||...+....++.+..+++.+...
T Consensus 79 ~~~~---~~G~~l~VIDTPGL~d~~~-~~e~--~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i 152 (313)
T TIGR00991 79 VSRT---RAGFTLNIIDTPGLIEGGY-INDQ--AVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI 152 (313)
T ss_pred EEEE---ECCeEEEEEECCCCCchHH-HHHH--HHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh
Confidence 1111 1236799999999997632 2221 123333333 3689999996544323566666677666542
Q ss_pred CCcEEEEEeCCCCCCh
Q psy13475 247 EYQTRIILNKADQVKP 262 (468)
Q Consensus 247 ~~~iiiVlNK~D~v~~ 262 (468)
..++++|+|++|...+
T Consensus 153 w~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 153 WRKSLVVLTHAQFSPP 168 (313)
T ss_pred hccEEEEEECCccCCC
Confidence 2589999999998743
No 112
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.34 E-value=5.8e-12 Score=114.85 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=71.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++.++.... .||+ |..+ ....+
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~-----~~t~--------------------------------~~~~--~~~~~ 43 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAF-----VSTV--------------------------------GIDF--KVKTV 43 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC-----CCce--------------------------------eeEE--EEEEE
Confidence 4899999999999999999998764211 1111 0000 01111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~iiiV 253 (468)
.. +.....+.++||||... +......++..+|++++|+|.+....-++...++..+.. ...|+++|
T Consensus 44 ~~-~~~~~~~~l~Dt~g~~~----------~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv 112 (165)
T cd01865 44 FR-NDKRVKLQIWDTAGQER----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILV 112 (165)
T ss_pred EE-CCEEEEEEEEECCChHH----------HHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 11 11124588999999643 223345557899999999998753211222334444432 34689999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
.||+|+...
T Consensus 113 ~nK~Dl~~~ 121 (165)
T cd01865 113 GNKCDMEDE 121 (165)
T ss_pred EECcccCcc
Confidence 999998643
No 113
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.34 E-value=6.1e-12 Score=113.90 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=71.8
Q ss_pred EEEEeccCCCChhhHHHHHhCC--cccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN--EYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~--~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
.|+++|.+|||||||+++|.+. .+.. .. .||+ |..+...
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~--~~---~~t~--------------------------------~~~~~~~-- 42 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPK--NY---LMTT--------------------------------GCDFVVK-- 42 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc--cC---CCce--------------------------------EEEEEEE--
Confidence 4899999999999999999864 2321 00 1111 1111000
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC--CCcEEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR--EYQTRI 252 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~--~~~iii 252 (468)
...+.......+.++||||... +......++.++|++++|+|.+....-.+...+++.+... ..|+++
T Consensus 43 ~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~il 112 (164)
T cd04101 43 EVPVDTDNTVELFIFDSAGQEL----------YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVL 112 (164)
T ss_pred EEEeCCCCEEEEEEEECCCHHH----------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 1111122235689999999533 2233556689999999999987621112223444544433 479999
Q ss_pred EEeCCCCCChH
Q psy13475 253 ILNKADQVKPE 263 (468)
Q Consensus 253 VlNK~D~v~~~ 263 (468)
|+||+|+.+..
T Consensus 113 v~nK~Dl~~~~ 123 (164)
T cd04101 113 VGNKMDLADKA 123 (164)
T ss_pred EEECccccccc
Confidence 99999986543
No 114
>PRK12736 elongation factor Tu; Reviewed
Probab=99.34 E-value=9.6e-12 Score=130.03 Aligned_cols=133 Identities=16% Similarity=0.133 Sum_probs=82.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|++++|||||+++|++.... .|..- ...+..+... .-++..+.|++... .
T Consensus 14 ni~i~Ghvd~GKSTL~~~L~~~~~~-----~g~~~-~~~~~~~d~~------------------~~E~~rg~T~~~~~-~ 68 (394)
T PRK12736 14 NIGTIGHVDHGKTTLTAAITKVLAE-----RGLNQ-AKDYDSIDAA------------------PEEKERGITINTAH-V 68 (394)
T ss_pred EEEEEccCCCcHHHHHHHHHhhhhh-----hcccc-ccchhhhcCC------------------HHHHhcCccEEEEe-e
Confidence 3999999999999999999974211 00000 0000000000 01111233433322 1
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc-EEEEEe
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ-TRIILN 255 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~-iiiVlN 255 (468)
.+. ....+++||||||+.+ |.......+..+|++++|+|+.. ++.....+.+..+...+.| +++|+|
T Consensus 69 ~~~-~~~~~i~~iDtPGh~~----------f~~~~~~~~~~~d~~llVvd~~~-g~~~~t~~~~~~~~~~g~~~~IvviN 136 (394)
T PRK12736 69 EYE-TEKRHYAHVDCPGHAD----------YVKNMITGAAQMDGAILVVAATD-GPMPQTREHILLARQVGVPYLVVFLN 136 (394)
T ss_pred Eec-CCCcEEEEEECCCHHH----------HHHHHHHHHhhCCEEEEEEECCC-CCchhHHHHHHHHHHcCCCEEEEEEE
Confidence 221 1236799999999653 33344455678999999999987 6777788888887777777 678999
Q ss_pred CCCCCChHHHH
Q psy13475 256 KADQVKPEELM 266 (468)
Q Consensus 256 K~D~v~~~el~ 266 (468)
|+|+++.+++.
T Consensus 137 K~D~~~~~~~~ 147 (394)
T PRK12736 137 KVDLVDDEELL 147 (394)
T ss_pred ecCCcchHHHH
Confidence 99998655443
No 115
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.34 E-value=3.8e-12 Score=116.56 Aligned_cols=113 Identities=10% Similarity=0.135 Sum_probs=69.5
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+|+|.+|+|||||+|.+++..+.... .|++ +..+ ...+.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~-----~~~~--------------------------------~~~~---~~~~~ 40 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDY-----VPTV--------------------------------FENY---SADVE 40 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCC-----CCcE--------------------------------Eeee---eEEEE
Confidence 589999999999999999998764211 1111 0010 11111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH-HHHHHHHhc--CCCcEEEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET-EAILDQLKG--REYQTRIIL 254 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~-~~ll~~l~~--~~~~iiiVl 254 (468)
.. .....+.++||||.... ......++..+|++++|+|.+....-+.. ..++..+.. .+.|+++|.
T Consensus 41 ~~-~~~~~~~i~Dt~G~~~~----------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~ 109 (174)
T smart00174 41 VD-GKPVELGLWDTAGQEDY----------DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVG 109 (174)
T ss_pred EC-CEEEEEEEEECCCCccc----------chhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 11 12245899999996432 22334457899999999998762111111 123344432 257999999
Q ss_pred eCCCCCC
Q psy13475 255 NKADQVK 261 (468)
Q Consensus 255 NK~D~v~ 261 (468)
||+|+..
T Consensus 110 nK~Dl~~ 116 (174)
T smart00174 110 TKLDLRE 116 (174)
T ss_pred cChhhhh
Confidence 9999875
No 116
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.34 E-value=7.7e-12 Score=112.68 Aligned_cols=111 Identities=20% Similarity=0.225 Sum_probs=70.1
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|.+|+|||||+|++++...... .||+ + ..... ..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~~~------~~t~--------------------------------~-~~~~~---~~ 39 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVTT------IPTI--------------------------------G-FNVET---VE 39 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC------CCCc--------------------------------C-cceEE---EE
Confidence 78999999999999999999863211 1111 0 11111 11
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH----hcCCCcEEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL----KGREYQTRII 253 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l----~~~~~~iiiV 253 (468)
. . ...+.++||||.... ......++..+|++++|+|++..+.-......+..+ ...+.|+++|
T Consensus 40 ~-~--~~~~~i~D~~G~~~~----------~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv 106 (158)
T cd00878 40 Y-K--NVSFTVWDVGGQDKI----------RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIF 106 (158)
T ss_pred E-C--CEEEEEEECCCChhh----------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEE
Confidence 1 1 256999999997542 233455678999999999998631111122222222 1245799999
Q ss_pred EeCCCCCChH
Q psy13475 254 LNKADQVKPE 263 (468)
Q Consensus 254 lNK~D~v~~~ 263 (468)
+||+|+....
T Consensus 107 ~nK~D~~~~~ 116 (158)
T cd00878 107 ANKQDLPGAL 116 (158)
T ss_pred eeccCCcccc
Confidence 9999987543
No 117
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.34 E-value=6.3e-12 Score=113.56 Aligned_cols=115 Identities=21% Similarity=0.305 Sum_probs=72.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|++|+|||||+|+|++.++.. . ..||+. ..+.. ..+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~---~--~~~t~~--------------------------------~~~~~--~~v 43 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSE---N--QESTIG--------------------------------AAFLT--QTV 43 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---C--CCCccc--------------------------------eeEEE--EEE
Confidence 48999999999999999999988753 1 111111 00100 011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~iiiV 253 (468)
.. ......+.++||||... +......++..+|++++|+|++....-.....++..+.. ...|+++|
T Consensus 44 ~~-~~~~~~~~i~D~~G~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv 112 (163)
T cd01860 44 NL-DDTTVKFEIWDTAGQER----------YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALV 112 (163)
T ss_pred EE-CCEEEEEEEEeCCchHH----------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 11 11124588999999532 223345568899999999999763211223344454443 34689999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+..
T Consensus 113 ~nK~D~~~ 120 (163)
T cd01860 113 GNKADLES 120 (163)
T ss_pred EECccccc
Confidence 99999873
No 118
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.34 E-value=6.5e-12 Score=114.32 Aligned_cols=115 Identities=22% Similarity=0.300 Sum_probs=69.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|++|+|||||+|+|++..+.... .||. +..+. ...+
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~-----~~t~--------------------------------~~~~~--~~~~ 42 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQY-----KATI--------------------------------GADFL--TKEV 42 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc-----CCcc--------------------------------ceEEE--EEEE
Confidence 4899999999999999999998764211 1110 00000 0011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHH----HHHHhc---CCCc
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAI----LDQLKG---REYQ 249 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~l----l~~l~~---~~~~ 249 (468)
..++ ....+.++||||... +......+++++|++++|+|++....-.+...+ +..+.. ...|
T Consensus 43 ~~~~-~~~~~~~~D~~g~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 111 (172)
T cd01862 43 TVDD-KLVTLQIWDTAGQER----------FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFP 111 (172)
T ss_pred EECC-EEEEEEEEeCCChHH----------HHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCce
Confidence 1111 123578999999643 233455668999999999999762110112222 222221 2579
Q ss_pred EEEEEeCCCCCC
Q psy13475 250 TRIILNKADQVK 261 (468)
Q Consensus 250 iiiVlNK~D~v~ 261 (468)
+++|+||+|+..
T Consensus 112 ~ilv~nK~Dl~~ 123 (172)
T cd01862 112 FVVLGNKIDLEE 123 (172)
T ss_pred EEEEEECccccc
Confidence 999999999974
No 119
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.33 E-value=9.2e-12 Score=113.01 Aligned_cols=114 Identities=13% Similarity=0.232 Sum_probs=69.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+++...+.. . ..||+. ..+. ...
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~~~~~--~---~~~t~~--------------------------------~~~~---~~~ 42 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQGIFVE--K---YDPTIE--------------------------------DSYR---KQV 42 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc--c---cCCcch--------------------------------heEE---EEE
Confidence 58999999999999999998765431 1 112221 1111 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~iii 252 (468)
.. ......+.++||||... +......+...+|++++|+|.+....-++...++..+. ..+.|+++
T Consensus 43 ~~-~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 111 (164)
T cd04175 43 EV-DGQQCMLEILDTAGTEQ----------FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMIL 111 (164)
T ss_pred EE-CCEEEEEEEEECCCccc----------chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 11 11124578999999743 22334456788999999999875211122223333332 23579999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|.||+|+..
T Consensus 112 v~nK~Dl~~ 120 (164)
T cd04175 112 VGNKCDLED 120 (164)
T ss_pred EEECCcchh
Confidence 999999864
No 120
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.33 E-value=2.3e-11 Score=132.99 Aligned_cols=118 Identities=23% Similarity=0.283 Sum_probs=79.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee-eEE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR-LRG 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~-i~~ 175 (468)
.|+++|.+|+|||||+|+|.|.+.. .. |.. .. .+.|.+. +..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d----~~---~eE-------------~~-----------------rGiTid~~~~~ 44 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAAD----RL---PEE-------------KK-----------------RGMTIDLGFAY 44 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCc----CC---hhH-------------hc-----------------CCceEEeEEEE
Confidence 5899999999999999999986421 10 000 00 1111111 111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc-EEEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ-TRIIL 254 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~-iiiVl 254 (468)
...++ ..+.||||||... |.......+..+|++++|+|++. +...+..+.+..+...+.| +++|+
T Consensus 45 ~~~~~---~~v~~iDtPGhe~----------f~~~~~~g~~~aD~aILVVDa~~-G~~~qT~ehl~il~~lgi~~iIVVl 110 (581)
T TIGR00475 45 FPLPD---YRLGFIDVPGHEK----------FISNAIAGGGGIDAALLVVDADE-GVMTQTGEHLAVLDLLGIPHTIVVI 110 (581)
T ss_pred EEeCC---EEEEEEECCCHHH----------HHHHHHhhhccCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 22222 5799999999643 33445556789999999999987 5566666666666666677 99999
Q ss_pred eCCCCCChHHH
Q psy13475 255 NKADQVKPEEL 265 (468)
Q Consensus 255 NK~D~v~~~el 265 (468)
||+|+++.+.+
T Consensus 111 NK~Dlv~~~~~ 121 (581)
T TIGR00475 111 TKADRVNEEEI 121 (581)
T ss_pred ECCCCCCHHHH
Confidence 99999876544
No 121
>PLN03126 Elongation factor Tu; Provisional
Probab=99.33 E-value=1.1e-11 Score=132.14 Aligned_cols=131 Identities=18% Similarity=0.121 Sum_probs=83.5
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|++++|||||+++|++....+.+.. +. .+....... -++..+.+.+......
T Consensus 84 i~iiGhvd~GKSTLi~~Ll~~~~~i~~~~----~~--~~~~~D~~~------------------~Er~rGiTi~~~~~~~ 139 (478)
T PLN03126 84 IGTIGHVDHGKTTLTAALTMALASMGGSA----PK--KYDEIDAAP------------------EERARGITINTATVEY 139 (478)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhhcccc----cc--ccccccCCh------------------hHHhCCeeEEEEEEEE
Confidence 99999999999999999997543221110 00 000000000 0111122332221111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc-EEEEEeC
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ-TRIILNK 256 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~-iiiVlNK 256 (468)
. .....++||||||+.+ |.......+..+|++++|+|+.. ++..+..+.+..+...+.| +++++||
T Consensus 140 -~-~~~~~i~liDtPGh~~----------f~~~~~~g~~~aD~ailVVda~~-G~~~qt~e~~~~~~~~gi~~iIvvvNK 206 (478)
T PLN03126 140 -E-TENRHYAHVDCPGHAD----------YVKNMITGAAQMDGAILVVSGAD-GPMPQTKEHILLAKQVGVPNMVVFLNK 206 (478)
T ss_pred -e-cCCcEEEEEECCCHHH----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEec
Confidence 1 1235799999999865 33344555778999999999987 6778888888877777777 7789999
Q ss_pred CCCCChHHH
Q psy13475 257 ADQVKPEEL 265 (468)
Q Consensus 257 ~D~v~~~el 265 (468)
+|+++.++.
T Consensus 207 ~Dl~~~~~~ 215 (478)
T PLN03126 207 QDQVDDEEL 215 (478)
T ss_pred ccccCHHHH
Confidence 999875543
No 122
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.33 E-value=6.3e-12 Score=124.55 Aligned_cols=130 Identities=22% Similarity=0.332 Sum_probs=80.7
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|++|+|||||+|+|++..-.+ .+.|. +..|.+. .|+.-....+ +.+....+....
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~~g~~--~~~g~-----------------v~~g~~~-~d~~~~e~~r-~~ti~~~~~~~~ 60 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYATGAI--DRLGS-----------------VEDGTTV-SDYDPEEIKR-KMSISTSVAPLE 60 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC--ccCCe-----------------ecCCccc-CCCCHHHHhh-cccccceeEEEE
Confidence 7899999999999999998753321 11111 0111111 1110000000 111111111222
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCC
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKA 257 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~ 257 (468)
. . ...+++|||||..+ |...+..++..+|++++|+|++. +.......+++.+...+.|.++|+||+
T Consensus 61 ~-~--~~~i~liDtPG~~~----------f~~~~~~~l~~aD~~i~Vvd~~~-g~~~~~~~~~~~~~~~~~p~iivvNK~ 126 (268)
T cd04170 61 W-K--GHKINLIDTPGYAD----------FVGETRAALRAADAALVVVSAQS-GVEVGTEKLWEFADEAGIPRIIFINKM 126 (268)
T ss_pred E-C--CEEEEEEECcCHHH----------HHHHHHHHHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 1 1 25799999999865 33445566789999999999987 556666677777777788999999999
Q ss_pred CCCCh
Q psy13475 258 DQVKP 262 (468)
Q Consensus 258 D~v~~ 262 (468)
|....
T Consensus 127 D~~~~ 131 (268)
T cd04170 127 DRERA 131 (268)
T ss_pred ccCCC
Confidence 98753
No 123
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.33 E-value=1.2e-11 Score=114.09 Aligned_cols=110 Identities=21% Similarity=0.278 Sum_probs=69.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|.|++..+.. ..||. +.+. ...
T Consensus 17 kv~~~G~~~~GKTsl~~~l~~~~~~~------~~~t~--------------------------------~~~~----~~~ 54 (174)
T cd04153 17 KVIIVGLDNAGKTTILYQFLLGEVVH------TSPTI--------------------------------GSNV----EEI 54 (174)
T ss_pred EEEEECCCCCCHHHHHHHHccCCCCC------cCCcc--------------------------------ccce----EEE
Confidence 59999999999999999998876532 12221 1111 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHH-Hhc---CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQ-LKG---REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~-l~~---~~~~iii 252 (468)
.. . ...+.++||||... +......++..+|++++|+|++...--......+.. +.. .+.|+++
T Consensus 55 ~~-~--~~~~~l~D~~G~~~----------~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~vi 121 (174)
T cd04153 55 VY-K--NIRFLMWDIGGQES----------LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLV 121 (174)
T ss_pred EE-C--CeEEEEEECCCCHH----------HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEE
Confidence 11 1 25689999999754 223344557899999999999763111111222222 222 2479999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+..
T Consensus 122 v~NK~Dl~~ 130 (174)
T cd04153 122 LANKQDLKG 130 (174)
T ss_pred EEECCCCCC
Confidence 999999864
No 124
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.32 E-value=1.4e-11 Score=113.11 Aligned_cols=110 Identities=22% Similarity=0.263 Sum_probs=70.2
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|.+|||||||+|+|.+. +. ....||. | .... .+.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~-~~-----~~~~~t~--------------------------------g-~~~~---~~~ 39 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE-IP-----KKVAPTV--------------------------------G-FTPT---KLR 39 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC-CC-----ccccCcc--------------------------------c-ceEE---EEE
Confidence 789999999999999999986 21 1111221 1 1111 111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTRII 253 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~iiiV 253 (468)
. . ...+.++||||... +......++..+|++++|+|++....-.+....+..+.. .+.|+++|
T Consensus 40 ~-~--~~~~~i~D~~G~~~----------~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv 106 (167)
T cd04161 40 L-D--KYEVCIFDLGGGAN----------FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVL 106 (167)
T ss_pred E-C--CEEEEEEECCCcHH----------HHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEE
Confidence 1 1 25689999999643 223345668999999999999863211222334444432 35799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 107 ~NK~Dl~~~ 115 (167)
T cd04161 107 ANKQDKKNA 115 (167)
T ss_pred EeCCCCcCC
Confidence 999998653
No 125
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.32 E-value=2.1e-11 Score=118.67 Aligned_cols=88 Identities=24% Similarity=0.281 Sum_probs=56.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|.|.... ++.. +.+|.+...+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~~---------------------------------------~~tT~~~~~g~ 41 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAAY---------------------------------------EFTTLTCVPGV 41 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCC---------------------------------------CCccccceEEE
Confidence 5899999999999999999997532 1111 12333333332
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSK 229 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~ 229 (468)
.... ..++.++||||+.+.... ..+ +.......++.+|++++|+|++.
T Consensus 42 ~~~~--~~~i~l~DtpG~~~~~~~-~~~--~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 42 LEYK--GAKIQLLDLPGIIEGAAD-GKG--RGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred EEEC--CeEEEEEECCCccccccc-chh--HHHHHHHhhccCCEEEEEecCCc
Confidence 2112 257999999998764321 111 22334456889999999999865
No 126
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.32 E-value=1e-11 Score=114.52 Aligned_cols=116 Identities=16% Similarity=0.247 Sum_probs=71.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|++++..+.. . ..||. +..+. ....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~---~--~~~t~--------------------------------~~~~~--~~~~ 42 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK---N--YKATI--------------------------------GVDFE--MERF 42 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---C--CCCce--------------------------------eeEEE--EEEE
Confidence 48999999999999999999987642 1 11221 11110 0111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~iii 252 (468)
.. ......+.|+||||... +......++..+|++++|+|++....-.....++..+.. ...|+++
T Consensus 43 ~~-~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iil 111 (170)
T cd04108 43 EI-LGVPFSLQLWDTAGQER----------FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFL 111 (170)
T ss_pred EE-CCEEEEEEEEeCCChHH----------HHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 11 12224689999999743 223345568899999999999762212223344444322 2246899
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|.||+|+.+.
T Consensus 112 VgnK~Dl~~~ 121 (170)
T cd04108 112 VGTKKDLSSP 121 (170)
T ss_pred EEEChhcCcc
Confidence 9999998643
No 127
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.32 E-value=9.2e-12 Score=116.41 Aligned_cols=117 Identities=13% Similarity=0.227 Sum_probs=71.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|++++..+.. + . ..||+ +..+.. ..+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~-~-~--~~~t~--------------------------------~~~~~~--~~~ 43 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV-G-P--YQNTI--------------------------------GAAFVA--KRM 43 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC-c-C--cccce--------------------------------eeEEEE--EEE
Confidence 48999999999999999999876631 0 0 11111 111100 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC--CCcEEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR--EYQTRIIL 254 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~--~~~iiiVl 254 (468)
..+ .....+.++||||... +......+...+|++++|+|.+....-+....+++.+... +.|+++|.
T Consensus 44 ~~~-~~~~~l~i~D~~G~~~----------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~ 112 (193)
T cd04118 44 VVG-ERVVTLGIWDTAGSER----------YEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCG 112 (193)
T ss_pred EEC-CEEEEEEEEECCCchh----------hhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 211 1113477999999643 2223445678999999999997631112223445555433 57999999
Q ss_pred eCCCCCCh
Q psy13475 255 NKADQVKP 262 (468)
Q Consensus 255 NK~D~v~~ 262 (468)
||+|+...
T Consensus 113 nK~Dl~~~ 120 (193)
T cd04118 113 TKSDLIEQ 120 (193)
T ss_pred Eccccccc
Confidence 99998643
No 128
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.32 E-value=1.3e-11 Score=114.71 Aligned_cols=112 Identities=12% Similarity=0.205 Sum_probs=70.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|.|++..+.. .. .||+ ..+....+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~--~~---~~t~-----------------------------------~~~~~~~i 41 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPE--EY---VPTV-----------------------------------FENYVTNI 41 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCC--CC---CCee-----------------------------------eeeeEEEE
Confidence 48999999999999999999987641 11 1111 01111112
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHH----HHHHHh--cCCCcE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEA----ILDQLK--GREYQT 250 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~----ll~~l~--~~~~~i 250 (468)
..++.....+.|+||||... +......+...+|++++|+|.+.. ..+.. ++..+. ..+.|+
T Consensus 42 ~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~pi 108 (187)
T cd04132 42 QGPNGKIIELALWDTAGQEE----------YDRLRPLSYPDVDVLLICYAVDNP---TSLDNVEDKWFPEVNHFCPGTPI 108 (187)
T ss_pred EecCCcEEEEEEEECCCchh----------HHHHHHHhCCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHhCCCCCE
Confidence 22222234688999999643 223344457899999999999762 22222 222332 235799
Q ss_pred EEEEeCCCCCC
Q psy13475 251 RIILNKADQVK 261 (468)
Q Consensus 251 iiVlNK~D~v~ 261 (468)
++|.||+|+..
T Consensus 109 ilv~nK~Dl~~ 119 (187)
T cd04132 109 MLVGLKTDLRK 119 (187)
T ss_pred EEEEeChhhhh
Confidence 99999999864
No 129
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.32 E-value=4.6e-12 Score=115.22 Aligned_cols=114 Identities=19% Similarity=0.240 Sum_probs=68.0
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|.+|+|||||++++++..+.. .. .||+. ..+ .....
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~~--~~---~~t~~--------------------------------~~~---~~~~~ 41 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFIG--EY---DPNLE--------------------------------SLY---SRQVT 41 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCcccc--cc---CCChH--------------------------------Hhc---eEEEE
Confidence 7899999999999999998765531 11 12110 000 01111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh-----cCCCcEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK-----GREYQTRI 252 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~-----~~~~~iii 252 (468)
+ ......+.|+||||.... +......++..+|++++|+|++....-+....++..+. ..+.|+++
T Consensus 42 ~-~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piil 111 (165)
T cd04146 42 I-DGEQVSLEILDTAGQQQA---------DTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVIL 111 (165)
T ss_pred E-CCEEEEEEEEECCCCccc---------ccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 1 111135789999998641 11123345778999999999986311111222333322 23579999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|.||+|+..
T Consensus 112 v~nK~Dl~~ 120 (165)
T cd04146 112 VGNKADLLH 120 (165)
T ss_pred EEECCchHH
Confidence 999999753
No 130
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.32 E-value=1.3e-11 Score=113.81 Aligned_cols=122 Identities=19% Similarity=0.209 Sum_probs=71.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCce-eE--EEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAY-FN--ILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~-~~--~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
.|+++|.+|+|||||+|++.+..+.. . ..||... +. .+.++... ++++..
T Consensus 6 ki~ivG~~~vGKTsli~~~~~~~~~~---~--~~~t~~~~~~~~~~~~~~~~--------------------~~~~~~-- 58 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYTDNKFNP---K--FITTVGIDFREKRVVYNSSG--------------------PGGTLG-- 58 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc---c--CCCccceEEEEEEEEEcCcc--------------------cccccc--
Confidence 48999999999999999999876642 1 1122110 00 01100000 011000
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCc
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQ 249 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~ 249 (468)
......+.|+||||... +......++..+|++++|+|++....-.....++..+.. .+.|
T Consensus 59 ------~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 122 (180)
T cd04127 59 ------RGQRIHLQLWDTAGQER----------FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD 122 (180)
T ss_pred ------CCCEEEEEEEeCCChHH----------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 01124588999999543 334456668899999999999762111112233333432 2468
Q ss_pred EEEEEeCCCCCC
Q psy13475 250 TRIILNKADQVK 261 (468)
Q Consensus 250 iiiVlNK~D~v~ 261 (468)
+++|.||+|+.+
T Consensus 123 iiiv~nK~Dl~~ 134 (180)
T cd04127 123 IVLCGNKADLED 134 (180)
T ss_pred EEEEEeCccchh
Confidence 999999999864
No 131
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.32 E-value=7.1e-12 Score=111.15 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=64.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..... . .|. ++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~---~----------------------------------------~t~-----~~ 33 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY---K----------------------------------------KTQ-----AV 33 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc---c----------------------------------------cce-----eE
Confidence 48999999999999999999875421 0 110 01
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
.. .-.+|||||.... ..+. +.. ....+.++|++++|+|++.. .+.....+++.+ ..|+++|+||
T Consensus 34 ~~------~~~~iDt~G~~~~---~~~~--~~~-~~~~~~~ad~vilv~d~~~~-~s~~~~~~~~~~---~~p~ilv~NK 97 (142)
T TIGR02528 34 EY------NDGAIDTPGEYVE---NRRL--YSA-LIVTAADADVIALVQSATDP-ESRFPPGFASIF---VKPVIGLVTK 97 (142)
T ss_pred EE------cCeeecCchhhhh---hHHH--HHH-HHHHhhcCCEEEEEecCCCC-CcCCChhHHHhc---cCCeEEEEEe
Confidence 11 0157999997321 1111 222 22347899999999999763 222223333332 3499999999
Q ss_pred CCCCC
Q psy13475 257 ADQVK 261 (468)
Q Consensus 257 ~D~v~ 261 (468)
+|+.+
T Consensus 98 ~Dl~~ 102 (142)
T TIGR02528 98 IDLAE 102 (142)
T ss_pred eccCC
Confidence 99864
No 132
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.32 E-value=7.7e-12 Score=112.22 Aligned_cols=116 Identities=20% Similarity=0.300 Sum_probs=70.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.... .|++.. ... ...+
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~-----~~~~~~--------------------------------~~~--~~~~ 42 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH-----ESTTQA--------------------------------SFF--QKTV 42 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc-----CCccce--------------------------------eEE--EEEE
Confidence 3899999999999999999988764211 111100 000 0011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.. ......+.++||||... +......++..+|++++|+|.+....-.....++..+. ..+.|+++|
T Consensus 43 ~~-~~~~~~~~~~D~~g~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv 111 (162)
T cd04123 43 NI-GGKRIDLAIWDTAGQER----------YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIV 111 (162)
T ss_pred EE-CCEEEEEEEEECCchHH----------HHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 11 11113588999999543 22334455789999999999876321112223333332 335799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+...
T Consensus 112 ~nK~D~~~~ 120 (162)
T cd04123 112 GNKIDLERQ 120 (162)
T ss_pred EECcccccc
Confidence 999998743
No 133
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.32 E-value=1.8e-11 Score=112.65 Aligned_cols=110 Identities=18% Similarity=0.228 Sum_probs=69.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+++|....+.. ..||+. .+. .. .
T Consensus 11 kv~i~G~~~~GKTsli~~l~~~~~~~------~~~t~g--------------------------------~~~-~~---~ 48 (168)
T cd04149 11 RILMLGLDAAGKTTILYKLKLGQSVT------TIPTVG--------------------------------FNV-ET---V 48 (168)
T ss_pred EEEEECcCCCCHHHHHHHHccCCCcc------ccCCcc--------------------------------cce-EE---E
Confidence 59999999999999999998765531 123221 111 11 1
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHH-HHHhc---CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAIL-DQLKG---REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll-~~l~~---~~~~iii 252 (468)
.. . ...+.++||||.... ......++..+|++++|+|++....-.+....+ +.+.. .+.|+++
T Consensus 49 ~~-~--~~~~~l~Dt~G~~~~----------~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piil 115 (168)
T cd04149 49 TY-K--NVKFNVWDVGGQDKI----------RPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLV 115 (168)
T ss_pred EE-C--CEEEEEEECCCCHHH----------HHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEE
Confidence 11 1 156899999997542 233445688999999999998631112222222 22222 2469999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|.||+|+.+
T Consensus 116 v~NK~Dl~~ 124 (168)
T cd04149 116 FANKQDLPD 124 (168)
T ss_pred EEECcCCcc
Confidence 999999863
No 134
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.31 E-value=1.1e-11 Score=111.91 Aligned_cols=117 Identities=15% Similarity=0.244 Sum_probs=71.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|++.+..+.. ...||.. ..+.. ..+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~-----~~~~t~~--------------------------------~~~~~--~~~ 42 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK-----DYKKTIG--------------------------------VDFLE--KQI 42 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-----CCCCcEE--------------------------------EEEEE--EEE
Confidence 38999999999999999999876532 1112110 00000 011
Q ss_pred ecC-CCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc--CCCcEEEE
Q psy13475 177 QLP-HPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG--REYQTRII 253 (468)
Q Consensus 177 ~~~-~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~--~~~~iiiV 253 (468)
.+. ......+.|+||||... +......++..+|++++|+|++....-.....++..+.. .+.|+++|
T Consensus 43 ~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv 112 (162)
T cd04106 43 FLRQSDEDVRLMLWDTAGQEE----------FDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLV 112 (162)
T ss_pred EEcCCCCEEEEEEeeCCchHH----------HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 111 12224689999999532 333455668899999999998763211122233333322 35799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+...
T Consensus 113 ~nK~Dl~~~ 121 (162)
T cd04106 113 QTKIDLLDQ 121 (162)
T ss_pred EEChhcccc
Confidence 999998753
No 135
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.31 E-value=1.1e-11 Score=138.51 Aligned_cols=116 Identities=21% Similarity=0.251 Sum_probs=82.9
Q ss_pred ccCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcccccccccccccee
Q psy13475 92 IFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLD 171 (468)
Q Consensus 92 ~~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~ 171 (468)
..+.|.|+|+|..|+|||||+|+|.+.++.. +.. ++.|.+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~-~e~---------------------------------------~GIT~~ 326 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAA-GEA---------------------------------------GGITQH 326 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccc---------------------------------------Cceeee
Confidence 3488999999999999999999998876541 100 111111
Q ss_pred e-eEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcE
Q psy13475 172 R-LRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQT 250 (468)
Q Consensus 172 ~-i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~i 250 (468)
. ...+.+. ...++||||||+.. |.......+..+|++++|+|++. +...+..+.+..+...+.|+
T Consensus 327 iga~~v~~~---~~~ItfiDTPGhe~----------F~~m~~rga~~aDiaILVVdAdd-Gv~~qT~e~i~~a~~~~vPi 392 (787)
T PRK05306 327 IGAYQVETN---GGKITFLDTPGHEA----------FTAMRARGAQVTDIVVLVVAADD-GVMPQTIEAINHAKAAGVPI 392 (787)
T ss_pred ccEEEEEEC---CEEEEEEECCCCcc----------chhHHHhhhhhCCEEEEEEECCC-CCCHhHHHHHHHHHhcCCcE
Confidence 0 0111111 25799999999765 33333445788999999999987 56777777888777778899
Q ss_pred EEEEeCCCCCC
Q psy13475 251 RIILNKADQVK 261 (468)
Q Consensus 251 iiVlNK~D~v~ 261 (468)
++|+||+|+..
T Consensus 393 IVviNKiDl~~ 403 (787)
T PRK05306 393 IVAINKIDKPG 403 (787)
T ss_pred EEEEECccccc
Confidence 99999999864
No 136
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.31 E-value=1.2e-11 Score=136.69 Aligned_cols=135 Identities=17% Similarity=0.077 Sum_probs=80.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCC-------CCCCC-cee--EEEecCCCCccccCcccccCcccccccccc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTG-------AEPSP-AYF--NILSWGESPTILDGTQLAADWTFSGLQKFG 166 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G-------~~ptT-~~~--~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg 166 (468)
.|+++|++|+|||||+|+|+...-.+++...+ ..-+| +.| ..++.+..++.- .
T Consensus 26 ~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~-----------------r 88 (632)
T PRK05506 26 RFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAERE-----------------Q 88 (632)
T ss_pred EEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHh-----------------C
Confidence 39999999999999999999876554322100 01111 222 222222211111 1
Q ss_pred ccceeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC
Q psy13475 167 QGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR 246 (468)
Q Consensus 167 ~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~ 246 (468)
+.|++.-..... ....+++||||||+.+ |.......+..+|++++|+|+.. ++..+..+.+..+...
T Consensus 89 g~Tid~~~~~~~--~~~~~~~liDtPG~~~----------f~~~~~~~~~~aD~~llVvda~~-g~~~~t~e~~~~~~~~ 155 (632)
T PRK05506 89 GITIDVAYRYFA--TPKRKFIVADTPGHEQ----------YTRNMVTGASTADLAIILVDARK-GVLTQTRRHSFIASLL 155 (632)
T ss_pred CcCceeeeeEEc--cCCceEEEEECCChHH----------HHHHHHHHHHhCCEEEEEEECCC-CccccCHHHHHHHHHh
Confidence 223332222221 1236799999999754 22223345789999999999987 5555554444444433
Q ss_pred C-CcEEEEEeCCCCCC
Q psy13475 247 E-YQTRIILNKADQVK 261 (468)
Q Consensus 247 ~-~~iiiVlNK~D~v~ 261 (468)
+ .++++|+||+|+++
T Consensus 156 ~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 156 GIRHVVLAVNKMDLVD 171 (632)
T ss_pred CCCeEEEEEEeccccc
Confidence 4 57889999999985
No 137
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.31 E-value=1.8e-11 Score=114.03 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=70.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|||||||+|++++.++.. ..||+. .++ ..+. +
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~~------~~~t~~--------------------------------~~~-~~~~-~ 44 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFVN------TVPTKG--------------------------------FNT-EKIK-V 44 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCC------cCCccc--------------------------------cce-eEEE-e
Confidence 59999999999999999999876531 122221 011 0111 1
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHH----HHHHHhcCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEA----ILDQLKGREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~----ll~~l~~~~~~iii 252 (468)
...+.....+.++||||... +......++..+|++++|+|++....-..... +.......+.|+++
T Consensus 45 ~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~ii 114 (183)
T cd04152 45 SLGNSKGITFHFWDVGGQEK----------LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLV 114 (183)
T ss_pred eccCCCceEEEEEECCCcHh----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 11122225689999999643 22334555789999999999876311111112 22222334679999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+..
T Consensus 115 v~NK~D~~~ 123 (183)
T cd04152 115 LANKQDLPN 123 (183)
T ss_pred EEECcCccc
Confidence 999999863
No 138
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.31 E-value=1.5e-11 Score=116.29 Aligned_cols=116 Identities=20% Similarity=0.263 Sum_probs=71.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|||||||+|.|++..+... ..||.. ..+ ....+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~-----~~~t~~--------------------------------~d~--~~~~v 42 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQH-----YKATIG--------------------------------VDF--ALKVI 42 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC-----CCCcee--------------------------------EEE--EEEEE
Confidence 389999999999999999998766421 112210 001 01112
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh-------cCCCc
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK-------GREYQ 249 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~-------~~~~~ 249 (468)
.........+.|+||||... +......++..+|++++|+|.+....-+....++..+. ....|
T Consensus 43 ~~~~~~~~~l~l~Dt~G~~~----------~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~p 112 (201)
T cd04107 43 EWDPNTVVRLQLWDIAGQER----------FGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP 112 (201)
T ss_pred EECCCCEEEEEEEECCCchh----------hhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCc
Confidence 22212224688999999732 33445667899999999999876211111112222221 23569
Q ss_pred EEEEEeCCCCCC
Q psy13475 250 TRIILNKADQVK 261 (468)
Q Consensus 250 iiiVlNK~D~v~ 261 (468)
+++|.||+|+.+
T Consensus 113 iilv~NK~Dl~~ 124 (201)
T cd04107 113 CLLLANKCDLKK 124 (201)
T ss_pred EEEEEECCCccc
Confidence 999999999863
No 139
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.30 E-value=1.8e-11 Score=133.77 Aligned_cols=133 Identities=19% Similarity=0.281 Sum_probs=80.6
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
.|.|.|+++|++|+|||||+|+|.|..+.... ..|.+++... +.+ |+.......+.....
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~-~g~itq~ig~-~~~------------------~~~~~~~~~~~~~~~ 63 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE-AGGITQHIGA-TEV------------------PIDVIEKIAGPLKKP 63 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCC-CCceEEeece-eec------------------cccccccccceeccc
Confidence 48899999999999999999999987653110 0000011000 000 000000000000000
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEE
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRI 252 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iii 252 (468)
+ .. .-....++|+||||+.+. .......+..+|++++|+|++. ++.++....+..+...+.|+++
T Consensus 64 ~---~~-~~~~~~i~~iDTPG~e~f----------~~~~~~~~~~aD~~IlVvDa~~-g~~~qt~e~i~~~~~~~vpiIv 128 (586)
T PRK04004 64 L---PI-KLKIPGLLFIDTPGHEAF----------TNLRKRGGALADIAILVVDINE-GFQPQTIEAINILKRRKTPFVV 128 (586)
T ss_pred c---cc-ccccCCEEEEECCChHHH----------HHHHHHhHhhCCEEEEEEECCC-CCCHhHHHHHHHHHHcCCCEEE
Confidence 0 00 001134899999998653 2233344678999999999987 5667777777777777889999
Q ss_pred EEeCCCCC
Q psy13475 253 ILNKADQV 260 (468)
Q Consensus 253 VlNK~D~v 260 (468)
|+||+|+.
T Consensus 129 viNK~D~~ 136 (586)
T PRK04004 129 AANKIDRI 136 (586)
T ss_pred EEECcCCc
Confidence 99999985
No 140
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.30 E-value=4.5e-11 Score=131.25 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=80.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee-eEE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR-LRG 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~-i~~ 175 (468)
+|+++|.+++|||||+|+|.|.+.. +. +. .... | .|.+- +..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~d----r~---~e-------------E~~r----------------G-iTI~l~~~~ 44 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNAD----RL---PE-------------EKKR----------------G-MTIDLGYAY 44 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCc----cc---hh-------------cccC----------------C-ceEEeeeEE
Confidence 5899999999999999999986421 10 00 0000 1 11111 111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc-EEEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ-TRIIL 254 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~-iiiVl 254 (468)
... +....+.||||||+.. |...+...+..+|++++|+|++. ++.+++.+.+..+...+.| +++|+
T Consensus 45 ~~~--~~g~~i~~IDtPGhe~----------fi~~m~~g~~~~D~~lLVVda~e-g~~~qT~ehl~il~~lgi~~iIVVl 111 (614)
T PRK10512 45 WPQ--PDGRVLGFIDVPGHEK----------FLSNMLAGVGGIDHALLVVACDD-GVMAQTREHLAILQLTGNPMLTVAL 111 (614)
T ss_pred Eec--CCCcEEEEEECCCHHH----------HHHHHHHHhhcCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEE
Confidence 111 2225689999999743 33445555788999999999987 6777777777777666666 57999
Q ss_pred eCCCCCChHHHHHH
Q psy13475 255 NKADQVKPEELMRV 268 (468)
Q Consensus 255 NK~D~v~~~el~~v 268 (468)
||+|+++.+.+..+
T Consensus 112 NKiDlv~~~~~~~v 125 (614)
T PRK10512 112 TKADRVDEARIAEV 125 (614)
T ss_pred ECCccCCHHHHHHH
Confidence 99999876554443
No 141
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.30 E-value=1.2e-11 Score=119.11 Aligned_cols=137 Identities=19% Similarity=0.101 Sum_probs=75.8
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcc-----cccCccccccccccccceee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQ-----LAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~-----l~~D~~f~~L~~fg~tt~~~ 172 (468)
|+++|++++|||||+.+|+..--.+ .+.|.+. + . ......|+. ...| +...++-.+++++.
T Consensus 2 v~i~Gh~~~GKttL~~~ll~~~g~i--~~~~~~~----~---~---~~~~~~g~~~~~~~~~~d--~~~~E~~rg~T~d~ 67 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLGGV--DKRTIEK----Y---E---KEAKEMGKGSFKYAWVLD--TLKEERERGVTIDV 67 (219)
T ss_pred EEEecCCCCChHHHHHHHHHHhcCc--CHHHHHH----H---H---HHHHhcCCcchhHHhhhc--CCHHHhhCccCeec
Confidence 7899999999999999998642211 0000000 0 0 000000110 0011 11122223455554
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCC------CCCHhHHHHHHHHhcC
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKL------DVGPETEAILDQLKGR 246 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~------~i~~e~~~ll~~l~~~ 246 (468)
........ ...+.||||||+.+. .......+..+|++++|+|++.. +...+..+.+..+...
T Consensus 68 ~~~~~~~~--~~~i~liDtpG~~~~----------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (219)
T cd01883 68 GLAKFETE--KYRFTILDAPGHRDF----------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL 135 (219)
T ss_pred ceEEEeeC--CeEEEEEECCChHHH----------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc
Confidence 33333222 367999999997542 22333457789999999999862 2233444444444444
Q ss_pred C-CcEEEEEeCCCCC
Q psy13475 247 E-YQTRIILNKADQV 260 (468)
Q Consensus 247 ~-~~iiiVlNK~D~v 260 (468)
+ .|+++|+||+|+.
T Consensus 136 ~~~~iiivvNK~Dl~ 150 (219)
T cd01883 136 GVKQLIVAVNKMDDV 150 (219)
T ss_pred CCCeEEEEEEccccc
Confidence 4 5899999999997
No 142
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.30 E-value=9.3e-12 Score=114.84 Aligned_cols=114 Identities=19% Similarity=0.173 Sum_probs=70.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|.+++..+.. ...||+. ..+. ...
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~~-----~~~~t~~--------------------------------~~~~---~~~ 42 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFVE-----SYYPTIE--------------------------------NTFS---KII 42 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcc-----ccCcchh--------------------------------hhEE---EEE
Confidence 48999999999999999999876531 1122221 1110 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHH----HHHHhcCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAI----LDQLKGREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~l----l~~l~~~~~~iii 252 (468)
.. ......+.++||||..+. ......+...+|.+++|+|.+....-+....+ ++.....+.|+++
T Consensus 43 ~~-~~~~~~~~l~D~~g~~~~----------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~il 111 (180)
T cd04137 43 RY-KGQDYHLEIVDTAGQDEY----------SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVL 111 (180)
T ss_pred EE-CCEEEEEEEEECCChHhh----------HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 11 111235789999997542 22344567889999999998762111122222 2222234569999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|.||+|+..
T Consensus 112 v~NK~Dl~~ 120 (180)
T cd04137 112 VGNKSDLHT 120 (180)
T ss_pred EEEchhhhh
Confidence 999999864
No 143
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.30 E-value=1.8e-11 Score=129.10 Aligned_cols=134 Identities=20% Similarity=0.120 Sum_probs=79.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccC----------CCCCCCCceeEEEecCCCCccccCcccccCcccccccccc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLR----------TGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFG 166 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~----------~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg 166 (468)
.|+++|++++|||||+|+|++..-.+.... .|.. +..+..++... .-++..
T Consensus 8 ~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~--~~~~~~~~D~~-----------------~~Er~r 68 (425)
T PRK12317 8 NLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKE--SFKFAWVMDRL-----------------KEERER 68 (425)
T ss_pred EEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCc--ccchhhhhccC-----------------HhHhhc
Confidence 399999999999999999997755432210 0110 11111111111 111223
Q ss_pred ccceeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCC-CCCHhHHHHHHHHhc
Q psy13475 167 QGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKL-DVGPETEAILDQLKG 245 (468)
Q Consensus 167 ~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~-~i~~e~~~ll~~l~~ 245 (468)
++|++........ ....++||||||+.+ |.......+..+|++++|+|++.. ++.....+.+..+..
T Consensus 69 G~T~d~~~~~~~~--~~~~i~liDtpG~~~----------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~ 136 (425)
T PRK12317 69 GVTIDLAHKKFET--DKYYFTIVDCPGHRD----------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART 136 (425)
T ss_pred CccceeeeEEEec--CCeEEEEEECCCccc----------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH
Confidence 4555544433322 236799999999743 222233346789999999999751 234444444444444
Q ss_pred CC-CcEEEEEeCCCCCC
Q psy13475 246 RE-YQTRIILNKADQVK 261 (468)
Q Consensus 246 ~~-~~iiiVlNK~D~v~ 261 (468)
.+ .++++|+||+|+.+
T Consensus 137 ~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 137 LGINQLIVAINKMDAVN 153 (425)
T ss_pred cCCCeEEEEEEcccccc
Confidence 44 36899999999975
No 144
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.30 E-value=1.3e-11 Score=136.80 Aligned_cols=120 Identities=18% Similarity=0.316 Sum_probs=83.1
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
.+.|.|+|+|.+++|||||+|+|.+..++. +...|..+.. + .+ .
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i--------------------------------~-~~--~ 285 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKI--------------------------------G-AY--E 285 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCcccccc--------------------------------c-eE--E
Confidence 477899999999999999999999876642 1110111100 0 00 0
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEE
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRI 252 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iii 252 (468)
+ .... ......++||||||+.. |.......+..+|++++|+|++. +...+..+.+..+...+.|+++
T Consensus 286 v-~~~~-~~~~~kItfiDTPGhe~----------F~~mr~rg~~~aDiaILVVDA~d-Gv~~QT~E~I~~~k~~~iPiIV 352 (742)
T CHL00189 286 V-EFEY-KDENQKIVFLDTPGHEA----------FSSMRSRGANVTDIAILIIAADD-GVKPQTIEAINYIQAANVPIIV 352 (742)
T ss_pred E-EEEe-cCCceEEEEEECCcHHH----------HHHHHHHHHHHCCEEEEEEECcC-CCChhhHHHHHHHHhcCceEEE
Confidence 0 0110 11236799999999754 33444556789999999999987 5667777778878777889999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+..
T Consensus 353 ViNKiDl~~ 361 (742)
T CHL00189 353 AINKIDKAN 361 (742)
T ss_pred EEECCCccc
Confidence 999999874
No 145
>PTZ00369 Ras-like protein; Provisional
Probab=99.30 E-value=1.4e-11 Score=115.33 Aligned_cols=115 Identities=14% Similarity=0.162 Sum_probs=71.5
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||++++++..+... ..||+ +.++. ..
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~~-----~~~t~--------------------------------~~~~~---~~ 45 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFIDE-----YDPTI--------------------------------EDSYR---KQ 45 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcC-----cCCch--------------------------------hhEEE---EE
Confidence 3599999999999999999998766411 11221 11111 11
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~ii 251 (468)
+.++ .....+.|+||||..+. ......+...+|++++|+|.+....-+....++..+. ..+.|++
T Consensus 46 ~~~~-~~~~~l~i~Dt~G~~~~----------~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~pii 114 (189)
T PTZ00369 46 CVID-EETCLLDILDTAGQEEY----------SAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMI 114 (189)
T ss_pred EEEC-CEEEEEEEEeCCCCccc----------hhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 1221 11245789999997542 2334456789999999999976321122333333332 2356999
Q ss_pred EEEeCCCCCC
Q psy13475 252 IILNKADQVK 261 (468)
Q Consensus 252 iVlNK~D~v~ 261 (468)
+|.||+|+..
T Consensus 115 iv~nK~Dl~~ 124 (189)
T PTZ00369 115 LVGNKCDLDS 124 (189)
T ss_pred EEEECccccc
Confidence 9999999854
No 146
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.30 E-value=1.7e-11 Score=111.44 Aligned_cols=118 Identities=16% Similarity=0.218 Sum_probs=71.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+++|.+..+.. . ..||. +..+ ....
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~---~--~~~t~--------------------------------~~~~--~~~~ 48 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPP---G--QGATI--------------------------------GVDF--MIKT 48 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC---C--CCCce--------------------------------eeEE--EEEE
Confidence 359999999999999999999765531 1 11111 0000 0001
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHH---HHHhcCCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAIL---DQLKGREYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll---~~l~~~~~~iii 252 (468)
+.. .+....+.++||||... +......++..+|++++|+|++....-.....++ ..+.....|+++
T Consensus 49 ~~~-~~~~~~~~~~D~~g~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~ 117 (169)
T cd04114 49 VEI-KGEKIKLQIWDTAGQER----------FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITIL 117 (169)
T ss_pred EEE-CCEEEEEEEEECCCcHH----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 111 11113578999999654 2233455688999999999987521111122333 333444678999
Q ss_pred EEeCCCCCChH
Q psy13475 253 ILNKADQVKPE 263 (468)
Q Consensus 253 VlNK~D~v~~~ 263 (468)
|.||+|+....
T Consensus 118 v~NK~D~~~~~ 128 (169)
T cd04114 118 VGNKIDLAERR 128 (169)
T ss_pred EEECccccccc
Confidence 99999987543
No 147
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.29 E-value=3.2e-11 Score=119.82 Aligned_cols=89 Identities=27% Similarity=0.392 Sum_probs=65.0
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
-..|++||.||+|||||+|.|.+.+-. +.|+||+.|.. +-
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~se--------------------------------va~y~FTTl~~--------VP 102 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSE--------------------------------VADYPFTTLEP--------VP 102 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCcc--------------------------------ccccCceeccc--------cc
Confidence 347999999999999999999997542 23455544444 44
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhh-hhhccchhHHHHHhhcccCEEEEEEcCCC
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQ-VERQFPFNDACQWFIDRADIIFLVYDPSK 229 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~~~~aDlIllV~Da~~ 229 (468)
++. ...+.+|.++|+||+.++... ..|+ ..+...+..||+|++|+|+..
T Consensus 103 G~l--~Y~ga~IQild~Pgii~gas~g~grG----~~vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 103 GML--EYKGAQIQLLDLPGIIEGASSGRGRG----RQVLSVARNADLIIIVLDVFE 152 (365)
T ss_pred ceE--eecCceEEEEcCcccccCcccCCCCc----ceeeeeeccCCEEEEEEecCC
Confidence 444 233478999999999987654 4444 345556889999999999975
No 148
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.29 E-value=1.5e-11 Score=112.17 Aligned_cols=116 Identities=17% Similarity=0.222 Sum_probs=71.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|++.+..+... ..||+ +..+... .+
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~~~~~~-----~~~t~--------------------------------~~~~~~~--~~ 44 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEKKFMAD-----CPHTI--------------------------------GVEFGTR--II 44 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-----CCccc--------------------------------ceeEEEE--EE
Confidence 489999999999999999998876421 11111 0011000 01
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.. ......+.++||||... +......++..+|++++|+|.+....-+....++..+. ....|+++|
T Consensus 45 ~~-~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv 113 (166)
T cd04122 45 EV-NGQKIKLQIWDTAGQER----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLI 113 (166)
T ss_pred EE-CCEEEEEEEEECCCcHH----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 11 11124588999999643 33345556889999999999986311112223333332 234689999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
.||+|+...
T Consensus 114 ~nK~Dl~~~ 122 (166)
T cd04122 114 GNKADLEAQ 122 (166)
T ss_pred EECcccccc
Confidence 999998654
No 149
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.29 E-value=1.3e-11 Score=111.78 Aligned_cols=114 Identities=16% Similarity=0.272 Sum_probs=70.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||++.+++..+... ..||+..+ .. ..+
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~-----~~~t~~~~--------------------------------~~---~~~ 42 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEK-----YDPTIEDF--------------------------------YR---KEI 42 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC-----CCCchhhe--------------------------------EE---EEE
Confidence 489999999999999999998766421 11221100 00 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~iii 252 (468)
.+. .....+.|+||||... |......++..+|++++|+|.+....-.+...++..+.. .+.|+++
T Consensus 43 ~~~-~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pivi 111 (163)
T cd04176 43 EVD-SSPSVLEILDTAGTEQ----------FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIIL 111 (163)
T ss_pred EEC-CEEEEEEEEECCCccc----------ccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 111 1113578999999643 223344567899999999998762111222333333332 4579999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+..
T Consensus 112 v~nK~Dl~~ 120 (163)
T cd04176 112 VGNKVDLES 120 (163)
T ss_pred EEECccchh
Confidence 999999864
No 150
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.29 E-value=8.2e-12 Score=109.97 Aligned_cols=121 Identities=21% Similarity=0.279 Sum_probs=64.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++.... .+. .| .++.+.....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~~~-~~~----~~-----------------------------------~~~~~~~~~~ 42 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNKFI-TEY----KP-----------------------------------GTTRNYVTTV 42 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCc-CcC----CC-----------------------------------CceeeeeEEE
Confidence 5999999999999999999998732 111 11 1222222221
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
...+.....+.++||||..+.... ... +...+..++..+|++++|.++.. ........+..... .+.|+++|+||
T Consensus 43 ~~~~~~~~~~~~~D~~G~~~~~~~-~~~--~~~~~~~~i~~~d~~~~v~~~~~-~~~~~~~~~~~~~~-~~~p~ivv~nK 117 (161)
T TIGR00231 43 IEEDGKTYKFNLLDTAGQEDYRAI-RRL--YYRAVESSLRVFDIVILVLDVEE-ILEKQTKEIIHHAE-SNVPIILVGNK 117 (161)
T ss_pred EEECCEEEEEEEEECCCcccchHH-HHH--HHhhhhEEEEEEEEeeeehhhhh-HhHHHHHHHHHhcc-cCCcEEEEEEc
Confidence 111211146889999995432111 111 11122223344455544444433 11122223333333 26799999999
Q ss_pred CCCCCh
Q psy13475 257 ADQVKP 262 (468)
Q Consensus 257 ~D~v~~ 262 (468)
+|+...
T Consensus 118 ~D~~~~ 123 (161)
T TIGR00231 118 IDLRDA 123 (161)
T ss_pred ccCCcc
Confidence 999764
No 151
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.29 E-value=2.7e-11 Score=110.29 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=69.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||++++...++.. ..||+. -. +..+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~------~~pt~g--------------------------------~~----~~~~ 39 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT------TIPTIG--------------------------------FN----VETV 39 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc------cCCCCC--------------------------------cc----eEEE
Confidence 38999999999999999997655531 123221 01 1111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH-hc---CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL-KG---REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l-~~---~~~~iii 252 (468)
.. . ...+.++||||... +......+...+|++++|+|++....-++....+..+ .. ...|+++
T Consensus 40 ~~-~--~~~~~l~D~~G~~~----------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piil 106 (159)
T cd04150 40 EY-K--NISFTVWDVGGQDK----------IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLV 106 (159)
T ss_pred EE-C--CEEEEEEECCCCHh----------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEE
Confidence 11 1 25689999999754 2233455689999999999997632111222223222 21 2479999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|.||+|+.+
T Consensus 107 v~NK~Dl~~ 115 (159)
T cd04150 107 FANKQDLPN 115 (159)
T ss_pred EEECCCCCC
Confidence 999999864
No 152
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.29 E-value=3.3e-11 Score=112.30 Aligned_cols=113 Identities=20% Similarity=0.240 Sum_probs=70.9
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+.+.|+++|++|||||||+|+|.+..+... .||. +.+ .
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~------~~T~--------------------------------~~~----~ 55 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQH------VPTL--------------------------------HPT----S 55 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCccc------CCcc--------------------------------Ccc----e
Confidence 456799999999999999999998765321 1111 000 0
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCc
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQ 249 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~ 249 (468)
..+.. . ...+.++||||.... ......++..+|++++|+|++....-++....+..+. ..+.|
T Consensus 56 ~~i~~-~--~~~~~l~D~~G~~~~----------~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p 122 (190)
T cd00879 56 EELTI-G--NIKFKTFDLGGHEQA----------RRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP 122 (190)
T ss_pred EEEEE-C--CEEEEEEECCCCHHH----------HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC
Confidence 11111 1 146889999996542 2334556789999999999975311111222222222 23479
Q ss_pred EEEEEeCCCCCC
Q psy13475 250 TRIILNKADQVK 261 (468)
Q Consensus 250 iiiVlNK~D~v~ 261 (468)
+++|+||+|+..
T Consensus 123 vivv~NK~Dl~~ 134 (190)
T cd00879 123 FLILGNKIDLPG 134 (190)
T ss_pred EEEEEeCCCCCC
Confidence 999999999863
No 153
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.29 E-value=3.6e-11 Score=125.73 Aligned_cols=132 Identities=16% Similarity=0.142 Sum_probs=81.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|+.++|||||+++|++.-. ..|.... ..+...... ..++..+.|++... .
T Consensus 14 ~i~i~Ghvd~GKStL~~~L~~~~~-----~~g~~~~-~~~~~~d~~------------------~~E~~rG~Ti~~~~-~ 68 (394)
T TIGR00485 14 NIGTIGHVDHGKTTLTAAITTVLA-----KEGGAAA-RAYDQIDNA------------------PEEKARGITINTAH-V 68 (394)
T ss_pred EEEEEeecCCCHHHHHHHHHhhHH-----Hhhcccc-cccccccCC------------------HHHHhcCcceeeEE-E
Confidence 499999999999999999986411 1111000 000000000 00111233444322 2
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEE-EEEe
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTR-IILN 255 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ii-iVlN 255 (468)
.+. ....+++||||||+.+ |.......+..+|.+++|+|+.. ++..+..+.+..+...+.|.+ +|+|
T Consensus 69 ~~~-~~~~~~~liDtpGh~~----------f~~~~~~~~~~~D~~ilVvda~~-g~~~qt~e~l~~~~~~gi~~iIvvvN 136 (394)
T TIGR00485 69 EYE-TENRHYAHVDCPGHAD----------YVKNMITGAAQMDGAILVVSATD-GPMPQTREHILLARQVGVPYIVVFLN 136 (394)
T ss_pred EEc-CCCEEEEEEECCchHH----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEEE
Confidence 221 2235799999999854 33334445678999999999987 567777778877777777755 6899
Q ss_pred CCCCCChHHH
Q psy13475 256 KADQVKPEEL 265 (468)
Q Consensus 256 K~D~v~~~el 265 (468)
|+|+++.++.
T Consensus 137 K~Dl~~~~~~ 146 (394)
T TIGR00485 137 KCDMVDDEEL 146 (394)
T ss_pred ecccCCHHHH
Confidence 9999875543
No 154
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.29 E-value=8.3e-12 Score=113.49 Aligned_cols=116 Identities=9% Similarity=0.115 Sum_probs=70.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++.++.. +..|+... .+ ....
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~--------------------------------~~---~~~~ 41 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPT-----EYVPTVFD--------------------------------NY---SATV 41 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-----CCCCceee--------------------------------ee---EEEE
Confidence 38999999999999999999987631 11111100 00 0001
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC-CCHhHHHHHHHHhc--CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD-VGPETEAILDQLKG--REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~-i~~e~~~ll~~l~~--~~~~iiiV 253 (468)
.. ......+.++||||..... .........+|++++|+|++... .......++..+.. .+.|+++|
T Consensus 42 ~~-~~~~~~l~~~D~~g~~~~~----------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv 110 (171)
T cd00157 42 TV-DGKQVNLGLWDTAGQEEYD----------RLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILV 110 (171)
T ss_pred EE-CCEEEEEEEEeCCCccccc----------ccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 11 1112458899999976421 11223457899999999997621 11111223333332 24899999
Q ss_pred EeCCCCCChH
Q psy13475 254 LNKADQVKPE 263 (468)
Q Consensus 254 lNK~D~v~~~ 263 (468)
+||+|+....
T Consensus 111 ~nK~Dl~~~~ 120 (171)
T cd00157 111 GTKIDLRDDE 120 (171)
T ss_pred EccHHhhhch
Confidence 9999987554
No 155
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.29 E-value=1.7e-11 Score=111.89 Aligned_cols=113 Identities=23% Similarity=0.254 Sum_probs=69.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|||||||+|+|.+..++.. .|+|. +..+ ...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~------~~~~~-------------------------------~~~~----~~~ 40 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN------VPRVL-------------------------------PEIT----IPA 40 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc------CCCcc-------------------------------cceE----eee
Confidence 489999999999999999999876421 11110 0000 001
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH--HHHHHHHh--cCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET--EAILDQLK--GREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~--~~ll~~l~--~~~~~iii 252 (468)
.. ......+.++||||..... .....++..+|++++|+|.+... +-+. ..++..++ ....|+++
T Consensus 41 ~~-~~~~~~~~i~Dt~G~~~~~----------~~~~~~~~~ad~~ilv~d~~~~~-s~~~~~~~~~~~i~~~~~~~pvii 108 (166)
T cd01893 41 DV-TPERVPTTIVDTSSRPQDR----------ANLAAEIRKANVICLVYSVDRPS-TLERIRTKWLPLIRRLGVKVPIIL 108 (166)
T ss_pred ee-cCCeEEEEEEeCCCchhhh----------HHHhhhcccCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEE
Confidence 11 1122468899999975421 22445578999999999987621 2111 12233333 23579999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+.+.
T Consensus 109 v~nK~Dl~~~ 118 (166)
T cd01893 109 VGNKSDLRDG 118 (166)
T ss_pred EEEchhcccc
Confidence 9999998753
No 156
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.28 E-value=1.5e-11 Score=110.04 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=70.0
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|++|+|||||+|+|++..+.. ...|++. +......
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~~~~-----~~~~~~~------------------------------------~~~~~~~ 40 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFVE-----EYDPTIE------------------------------------DSYRKTI 40 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCc-----CcCCChh------------------------------------HeEEEEE
Confidence 7899999999999999999876431 1122221 1111111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH----hcCCCcEEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL----KGREYQTRII 253 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l----~~~~~~iiiV 253 (468)
........+.++||||.... ......++..+|++++|+|.+....-++...+...+ .....|+++|
T Consensus 41 ~~~~~~~~~~l~D~~g~~~~----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv 110 (160)
T cd00876 41 VVDGETYTLDILDTAGQEEF----------SAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLV 110 (160)
T ss_pred EECCEEEEEEEEECCChHHH----------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 11111245889999997542 223445578899999999987632112222333222 2246899999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|...
T Consensus 111 ~nK~D~~~ 118 (160)
T cd00876 111 GNKCDLEN 118 (160)
T ss_pred EECCcccc
Confidence 99999875
No 157
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.28 E-value=2.3e-11 Score=111.52 Aligned_cols=117 Identities=15% Similarity=0.271 Sum_probs=71.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||++++++..+... ..||. +..+.. ..+
T Consensus 4 ki~vvG~~~vGKTsli~~~~~~~~~~~-----~~~t~--------------------------------~~~~~~--~~~ 44 (170)
T cd04115 4 KIIVIGDSNVGKTCLTYRFCAGRFPER-----TEATI--------------------------------GVDFRE--RTV 44 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCc-----cccce--------------------------------eEEEEE--EEE
Confidence 599999999999999999998765421 11111 000100 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~iii 252 (468)
... .....+.++||||...... .....+...+|++++|+|++....-.....++..+.. .+.|+++
T Consensus 45 ~~~-~~~~~~~i~Dt~G~~~~~~---------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ii 114 (170)
T cd04115 45 EID-GERIKVQLWDTAGQERFRK---------SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRIL 114 (170)
T ss_pred EEC-CeEEEEEEEeCCChHHHHH---------hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEE
Confidence 111 1124689999999643211 2244557899999999999863211223334433332 3479999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|.||+|+...
T Consensus 115 v~nK~Dl~~~ 124 (170)
T cd04115 115 VGNKCDLREQ 124 (170)
T ss_pred EEECccchhh
Confidence 9999998643
No 158
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.28 E-value=2.3e-11 Score=113.51 Aligned_cols=115 Identities=20% Similarity=0.355 Sum_probs=71.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|||||||+|++++..+.... .||. |..+ ....+
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~-----~~t~--------------------------------~~~~--~~~~~ 42 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSEST-----KSTI--------------------------------GVDF--KIKTV 42 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC-----CCce--------------------------------eeEE--EEEEE
Confidence 4899999999999999999988774211 1111 1011 11112
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
... .....+.++||||... +......++..+|++++|+|.+....-.....++..+. ....|+++|
T Consensus 43 ~~~-~~~~~~~i~Dt~g~~~----------~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv 111 (188)
T cd04125 43 YIE-NKIIKLQIWDTNGQER----------FRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIV 111 (188)
T ss_pred EEC-CEEEEEEEEECCCcHH----------HHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 211 1124578999999543 22345667899999999999976321112223333333 234689999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+..
T Consensus 112 ~nK~Dl~~ 119 (188)
T cd04125 112 ANKSDLVN 119 (188)
T ss_pred EECCCCcc
Confidence 99999874
No 159
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.27 E-value=4.5e-11 Score=130.71 Aligned_cols=128 Identities=19% Similarity=0.292 Sum_probs=83.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|+.++|||||+++|+...-.. ...+ ..++. +..+.+.++. -|-|.......+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~--~~~~--~v~~~--~~D~~~~Ere-----------------rGiTI~~~~~~v 59 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTF--RANE--AVAER--VMDSNDLERE-----------------RGITILAKNTAI 59 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCC--cccc--cceee--cccCchHHHh-----------------CCccEEeeeEEE
Confidence 48999999999999999999742211 0110 01110 1111111100 022322222223
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
.. . ...++||||||+.+ |......++..+|.+++|+|+.. +...+...++..+...+.|+++|+||
T Consensus 60 ~~-~--~~kinlIDTPGh~D----------F~~ev~~~l~~aD~alLVVDa~~-G~~~qT~~~l~~a~~~~ip~IVviNK 125 (594)
T TIGR01394 60 RY-N--GTKINIVDTPGHAD----------FGGEVERVLGMVDGVLLLVDASE-GPMPQTRFVLKKALELGLKPIVVINK 125 (594)
T ss_pred EE-C--CEEEEEEECCCHHH----------HHHHHHHHHHhCCEEEEEEeCCC-CCcHHHHHHHHHHHHCCCCEEEEEEC
Confidence 32 2 26799999999865 33445556889999999999987 66777888888888888899999999
Q ss_pred CCCCC
Q psy13475 257 ADQVK 261 (468)
Q Consensus 257 ~D~v~ 261 (468)
+|+..
T Consensus 126 iD~~~ 130 (594)
T TIGR01394 126 IDRPS 130 (594)
T ss_pred CCCCC
Confidence 99864
No 160
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.27 E-value=4.2e-11 Score=114.79 Aligned_cols=130 Identities=18% Similarity=0.264 Sum_probs=77.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+||||++|.|+|.+....+. +..+.|... ....+.
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~--~~~~~t~~~----------------------------------~~~~~~ 45 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGS--SAKSVTQEC----------------------------------QKYSGE 45 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--T--TTSS--SS-----------------------------------EEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeecc--ccCCccccc----------------------------------ceeeee
Confidence 48999999999999999999998864321 112222111 111111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhc-cchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc-----CCCcE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQ-FPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG-----REYQT 250 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~-~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~-----~~~~i 250 (468)
. . ...+++|||||+.++....... -.+.+.........+++|+|++..+ ++.++...++.+.. ....+
T Consensus 46 ~--~--g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r--~t~~~~~~l~~l~~~FG~~~~k~~ 119 (212)
T PF04548_consen 46 V--D--GRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR--FTEEDREVLELLQEIFGEEIWKHT 119 (212)
T ss_dssp E--T--TEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB---SHHHHHHHHHHHHHHCGGGGGGE
T ss_pred e--c--ceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc--chHHHHHHHHHHHHHccHHHHhHh
Confidence 1 2 2679999999998764321111 0022222233567899999999985 48887777766653 22479
Q ss_pred EEEEeCCCCCChHHHHHH
Q psy13475 251 RIILNKADQVKPEELMRV 268 (468)
Q Consensus 251 iiVlNK~D~v~~~el~~v 268 (468)
+||+|.+|......+...
T Consensus 120 ivvfT~~d~~~~~~~~~~ 137 (212)
T PF04548_consen 120 IVVFTHADELEDDSLEDY 137 (212)
T ss_dssp EEEEEEGGGGTTTTHHHH
T ss_pred hHHhhhccccccccHHHH
Confidence 999999998866554433
No 161
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.27 E-value=2.5e-11 Score=111.00 Aligned_cols=115 Identities=17% Similarity=0.267 Sum_probs=70.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|++++..+... ..||+. ..+ ...+
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~-----~~~t~~--------------------------------~~~---~~~~ 42 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIES-----YDPTIE--------------------------------DSY---RKQV 42 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcc-----cCCcch--------------------------------heE---EEEE
Confidence 489999999999999999998765311 112211 011 0111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH----hcCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL----KGREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l----~~~~~~iii 252 (468)
.++ .....+.++||||... |......++..+|.+++|+|.+....-.....+...+ ...+.|+++
T Consensus 43 ~~~-~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piii 111 (168)
T cd04177 43 EID-GRQCDLEILDTAGTEQ----------FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVL 111 (168)
T ss_pred EEC-CEEEEEEEEeCCCccc----------chhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEE
Confidence 111 1124578999999654 2233445578899999999987521111122222222 233579999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|.||+|+...
T Consensus 112 v~nK~D~~~~ 121 (168)
T cd04177 112 VGNKADLEDD 121 (168)
T ss_pred EEEChhcccc
Confidence 9999998643
No 162
>PRK12739 elongation factor G; Reviewed
Probab=99.27 E-value=1.8e-11 Score=136.57 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=85.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|++|+|||||+|+|+...-.+ .+.|.. -.|++ ..| +...++..+.|++.....
T Consensus 10 ni~iiGh~~~GKsTL~~~ll~~~g~~--~~~~~v-----------------~~~~~-~~D--~~~~E~~rgiti~~~~~~ 67 (691)
T PRK12739 10 NIGIMAHIDAGKTTTTERILYYTGKS--HKIGEV-----------------HDGAA-TMD--WMEQEQERGITITSAATT 67 (691)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCc--cccccc-----------------cCCcc-ccC--CChhHhhcCCCccceeEE
Confidence 59999999999999999998642211 111100 00111 111 111111123333322211
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
.... ..+++||||||+.+ |...+...+..+|++++|+|+.. ++..++..++..+...+.|+++++||
T Consensus 68 ~~~~--~~~i~liDTPG~~~----------f~~e~~~al~~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~~~p~iv~iNK 134 (691)
T PRK12739 68 CFWK--GHRINIIDTPGHVD----------FTIEVERSLRVLDGAVAVFDAVS-GVEPQSETVWRQADKYGVPRIVFVNK 134 (691)
T ss_pred EEEC--CEEEEEEcCCCHHH----------HHHHHHHHHHHhCeEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 1112 36899999999865 22346666889999999999988 67888888999888888999999999
Q ss_pred CCCCCh
Q psy13475 257 ADQVKP 262 (468)
Q Consensus 257 ~D~v~~ 262 (468)
+|+...
T Consensus 135 ~D~~~~ 140 (691)
T PRK12739 135 MDRIGA 140 (691)
T ss_pred CCCCCC
Confidence 999853
No 163
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.27 E-value=1.7e-11 Score=134.26 Aligned_cols=111 Identities=22% Similarity=0.240 Sum_probs=71.8
Q ss_pred ccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEeecCCC
Q psy13475 102 GPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQLPHP 181 (468)
Q Consensus 102 G~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~~~~~ 181 (468)
|++|+|||||+|+|.|.+.. ++.. +++|.+...+....++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~-v~n~---------------------------------------pG~Tv~~~~~~i~~~~ 40 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT-VGNW---------------------------------------PGVTVEKKEGKLGFQG 40 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe-ecCC---------------------------------------CCeEEEEEEEEEEECC
Confidence 89999999999999998642 2222 3444444433321122
Q ss_pred CCcceEEEeCCCCchhhhhhhhccchhHHHHHh--hcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCC
Q psy13475 182 LLEKINIVEIPGILEIRKQVERQFPFNDACQWF--IDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQ 259 (468)
Q Consensus 182 ~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~--~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~ 259 (468)
.++.++||||..+......+ ..+.+.+ .+.+|++++|+|++.. +....+..++.+.+.|+++|+||+|+
T Consensus 41 --~~i~lvDtPG~~~~~~~s~~----e~v~~~~l~~~~aDvvI~VvDat~l---er~l~l~~ql~~~~~PiIIVlNK~Dl 111 (591)
T TIGR00437 41 --EDIEIVDLPGIYSLTTFSLE----EEVARDYLLNEKPDLVVNVVDASNL---ERNLYLTLQLLELGIPMILALNLVDE 111 (591)
T ss_pred --eEEEEEECCCccccCccchH----HHHHHHHHhhcCCCEEEEEecCCcc---hhhHHHHHHHHhcCCCEEEEEehhHH
Confidence 56899999998753221100 0123333 2479999999999863 23344445556667899999999998
Q ss_pred CC
Q psy13475 260 VK 261 (468)
Q Consensus 260 v~ 261 (468)
.+
T Consensus 112 ~~ 113 (591)
T TIGR00437 112 AE 113 (591)
T ss_pred HH
Confidence 64
No 164
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.26 E-value=3.2e-11 Score=110.31 Aligned_cols=114 Identities=24% Similarity=0.311 Sum_probs=70.7
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+++|++|+|||||+|+|.|..+... .||. |-+ +.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~------~~t~--------------------------------g~~----~~ 51 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHI------TPTQ--------------------------------GFN----IK 51 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCccc------CCCC--------------------------------Ccc----eE
Confidence 44699999999999999999999765321 1110 100 11
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHH-H---hcCCCcE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQ-L---KGREYQT 250 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~-l---~~~~~~i 250 (468)
.+... ...+.++||||.... ......++..+|++++|+|++....-......+.. + ...+.|+
T Consensus 52 ~i~~~---~~~~~~~D~~G~~~~----------~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 118 (173)
T cd04155 52 TVQSD---GFKLNVWDIGGQRAI----------RPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPV 118 (173)
T ss_pred EEEEC---CEEEEEEECCCCHHH----------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCE
Confidence 11211 256899999997532 22344457899999999999752111111222222 2 2235799
Q ss_pred EEEEeCCCCCChH
Q psy13475 251 RIILNKADQVKPE 263 (468)
Q Consensus 251 iiVlNK~D~v~~~ 263 (468)
++|+||+|+.+..
T Consensus 119 ivv~nK~D~~~~~ 131 (173)
T cd04155 119 LVFANKQDLATAA 131 (173)
T ss_pred EEEEECCCCccCC
Confidence 9999999987543
No 165
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.26 E-value=5.4e-11 Score=110.10 Aligned_cols=111 Identities=16% Similarity=0.191 Sum_probs=69.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||++++...++. ...||+. .. +..
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~~------~~~~t~~--------------------------------~~----~~~ 51 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGESV------TTIPTIG--------------------------------FN----VET 51 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCCC------CcCCccc--------------------------------cc----eEE
Confidence 35999999999999999999654442 1123321 11 111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH-hc---CCCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL-KG---REYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l-~~---~~~~ii 251 (468)
... . ...+.|+||||... +......++..||++++|+|++....-++..+.+..+ .. ...|++
T Consensus 52 ~~~-~--~~~l~l~D~~G~~~----------~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pii 118 (175)
T smart00177 52 VTY-K--NISFTVWDVGGQDK----------IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVIL 118 (175)
T ss_pred EEE-C--CEEEEEEECCCChh----------hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEE
Confidence 111 1 14689999999754 2234455689999999999987632112222333332 22 246999
Q ss_pred EEEeCCCCCC
Q psy13475 252 IILNKADQVK 261 (468)
Q Consensus 252 iVlNK~D~v~ 261 (468)
+|+||+|+.+
T Consensus 119 lv~NK~Dl~~ 128 (175)
T smart00177 119 VFANKQDLPD 128 (175)
T ss_pred EEEeCcCccc
Confidence 9999999864
No 166
>KOG1145|consensus
Probab=99.26 E-value=1.2e-10 Score=122.08 Aligned_cols=116 Identities=21% Similarity=0.322 Sum_probs=90.6
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
.|.|+|.|+|...-||||||.+|-+..++..- . |+-| ..
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E-~---------------------------------------GGIT-Qh 189 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGE-A---------------------------------------GGIT-QH 189 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhh-c---------------------------------------CCcc-ce
Confidence 38999999999999999999999998876311 1 1111 22
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEE
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRI 252 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iii 252 (468)
+-...++-+.+..|+|+||||+........|+ +.-+|+|++|+.+.. ++.++..+.++..+..+.|+++
T Consensus 190 IGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRG----------A~vtDIvVLVVAadD-GVmpQT~EaIkhAk~A~VpiVv 258 (683)
T KOG1145|consen 190 IGAFTVTLPSGKSITFLDTPGHAAFSAMRARG----------ANVTDIVVLVVAADD-GVMPQTLEAIKHAKSANVPIVV 258 (683)
T ss_pred eceEEEecCCCCEEEEecCCcHHHHHHHHhcc----------CccccEEEEEEEccC-CccHhHHHHHHHHHhcCCCEEE
Confidence 22223333455899999999988754444455 788999999999988 7899999999999999999999
Q ss_pred EEeCCCCC
Q psy13475 253 ILNKADQV 260 (468)
Q Consensus 253 VlNK~D~v 260 (468)
.+||+|..
T Consensus 259 AinKiDkp 266 (683)
T KOG1145|consen 259 AINKIDKP 266 (683)
T ss_pred EEeccCCC
Confidence 99999976
No 167
>KOG0448|consensus
Probab=99.26 E-value=1.2e-10 Score=124.67 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=105.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCcc---ccCcccccC-----cccccccccccc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTI---LDGTQLAAD-----WTFSGLQKFGQG 168 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~---i~G~~l~~D-----~~f~~L~~fg~t 168 (468)
.|+|.|.+|+||||+||+++..++. +.|..|||.+|..|...+.... ++|.....| .+..+|..-...
T Consensus 111 KV~ifGrts~GKSt~iNAmL~~klL----P~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 111 KVAIFGRTSAGKSTVINAMLHKKLL----PSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHhhC----cccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4999999999999999999999995 5889999999999987654332 345322222 122222222211
Q ss_pred ceeeeEEeecCCC---CC-cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh
Q psy13475 169 LLDRLRGLQLPHP---LL-EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK 244 (468)
Q Consensus 169 t~~~i~~~~~~~~---~l-~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~ 244 (468)
-...+..+..|.. .+ ..+.+||.||+..... +...+..+...||++++|+.+.. ..+...+.++....
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se-------~tswid~~cldaDVfVlV~NaEn-tlt~sek~Ff~~vs 258 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE-------LTSWIDSFCLDADVFVLVVNAEN-TLTLSEKQFFHKVS 258 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchh-------hhHHHHHHhhcCCeEEEEecCcc-HhHHHHHHHHHHhh
Confidence 1122333343332 22 3699999999986421 44556677889999999999977 56677777887776
Q ss_pred cCCCcEEEEEeCCCCCCh
Q psy13475 245 GREYQTRIILNKADQVKP 262 (468)
Q Consensus 245 ~~~~~iiiVlNK~D~v~~ 262 (468)
.....++|+.||+|....
T Consensus 259 ~~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 259 EEKPNIFILNNKWDASAS 276 (749)
T ss_pred ccCCcEEEEechhhhhcc
Confidence 656677888899998743
No 168
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.26 E-value=4.2e-11 Score=109.87 Aligned_cols=109 Identities=21% Similarity=0.276 Sum_probs=68.6
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|.+|||||||+|+|.+..+. ...||+.. .+..+.
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~~~------~~~~T~~~------------------------------------~~~~~~ 39 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFM------QPIPTIGF------------------------------------NVETVE 39 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC------CcCCcCce------------------------------------eEEEEE
Confidence 789999999999999999987442 12233210 011111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh-c---CCCcEEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK-G---REYQTRII 253 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~-~---~~~~iiiV 253 (468)
. ....+.++||||.... ......++..+|++++|+|++....-++....+..+. . .+.|+++|
T Consensus 40 ~---~~~~i~l~Dt~G~~~~----------~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv 106 (169)
T cd04158 40 Y---KNLKFTIWDVGGKHKL----------RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIF 106 (169)
T ss_pred E---CCEEEEEEECCCChhc----------chHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEE
Confidence 1 1256899999997542 2234455789999999999876321122223333332 1 23699999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+..
T Consensus 107 ~NK~Dl~~ 114 (169)
T cd04158 107 ANKQDVAG 114 (169)
T ss_pred EeCcCccc
Confidence 99999864
No 169
>PRK00007 elongation factor G; Reviewed
Probab=99.25 E-value=2.3e-11 Score=135.73 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=85.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|++|+|||||+|+|+...-.+ ...|.. -.|++ ..| +...++..+.+++.....
T Consensus 12 ni~iiG~~~~GKsTL~~~ll~~~g~~--~~~g~v-----------------~~~~~-~~D--~~~~E~~rg~ti~~~~~~ 69 (693)
T PRK00007 12 NIGIMAHIDAGKTTTTERILFYTGVN--HKIGEV-----------------HDGAA-TMD--WMEQEQERGITITSAATT 69 (693)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc--cccccc-----------------cCCcc-cCC--CCHHHHhCCCCEeccEEE
Confidence 69999999999999999998532111 011000 00111 111 111122233443332222
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
.... ...++||||||+.+. ...+...+..+|++++|+|+.. ++..++..++..+...+.|.++++||
T Consensus 70 ~~~~--~~~~~liDTPG~~~f----------~~ev~~al~~~D~~vlVvda~~-g~~~qt~~~~~~~~~~~~p~iv~vNK 136 (693)
T PRK00007 70 CFWK--DHRINIIDTPGHVDF----------TIEVERSLRVLDGAVAVFDAVG-GVEPQSETVWRQADKYKVPRIAFVNK 136 (693)
T ss_pred EEEC--CeEEEEEeCCCcHHH----------HHHHHHHHHHcCEEEEEEECCC-CcchhhHHHHHHHHHcCCCEEEEEEC
Confidence 2112 368999999998653 2335556788999999999987 78888899999998888999999999
Q ss_pred CCCCCh
Q psy13475 257 ADQVKP 262 (468)
Q Consensus 257 ~D~v~~ 262 (468)
+|....
T Consensus 137 ~D~~~~ 142 (693)
T PRK00007 137 MDRTGA 142 (693)
T ss_pred CCCCCC
Confidence 998853
No 170
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.25 E-value=2.4e-11 Score=114.67 Aligned_cols=113 Identities=18% Similarity=0.268 Sum_probs=69.4
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|.+|+|||||+|++++..+... ..||+..+. ...+.
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~~~~~-----~~~t~~~~~-----------------------------------~~~~~ 41 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFEPK-----YRRTVEEMH-----------------------------------RKEYE 41 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcc-----CCCchhhhe-----------------------------------eEEEE
Confidence 78999999999999999998776421 111111100 00111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHH----HHHhcCCCcEEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAIL----DQLKGREYQTRII 253 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll----~~l~~~~~~iiiV 253 (468)
+ ......+.|+||||.... ......++..+|++++|+|++....-+....++ +.....+.|+++|
T Consensus 42 ~-~~~~~~l~i~D~~G~~~~----------~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv 110 (198)
T cd04147 42 V-GGVSLTLDILDTSGSYSF----------PAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVV 110 (198)
T ss_pred E-CCEEEEEEEEECCCchhh----------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 1 111135889999997542 223445678999999999987621111122222 2222346899999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+..
T Consensus 111 ~NK~Dl~~ 118 (198)
T cd04147 111 GNKADSLE 118 (198)
T ss_pred EEcccccc
Confidence 99999865
No 171
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.25 E-value=5.3e-11 Score=113.28 Aligned_cols=112 Identities=24% Similarity=0.342 Sum_probs=69.0
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
|.|+++|++++|||||++.|.+.++... .+++ . ++. ..
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t------~~s~-~------------------------------~~~-----~~ 38 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST------VTSI-E------------------------------PNV-----AT 38 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc------cCcE-e------------------------------ecc-----eE
Confidence 5699999999999999999998765321 0111 0 000 00
Q ss_pred eecC-CCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhccc-CEEEEEEcCCCCCCCHhHHH-------HHHHHh--
Q psy13475 176 LQLP-HPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRA-DIIFLVYDPSKLDVGPETEA-------ILDQLK-- 244 (468)
Q Consensus 176 ~~~~-~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~a-DlIllV~Da~~~~i~~e~~~-------ll~~l~-- 244 (468)
.... ......+.+|||||..... .....++..+ +++++|+|+.... ..... ++....
T Consensus 39 ~~~~~~~~~~~~~l~D~pG~~~~~----------~~~~~~~~~~~~~vV~VvD~~~~~--~~~~~~~~~l~~il~~~~~~ 106 (203)
T cd04105 39 FILNSEGKGKKFRLVDVPGHPKLR----------DKLLETLKNSAKGIVFVVDSATFQ--KNLKDVAEFLYDILTDLEKV 106 (203)
T ss_pred EEeecCCCCceEEEEECCCCHHHH----------HHHHHHHhccCCEEEEEEECccch--hHHHHHHHHHHHHHHHHhhc
Confidence 1110 0122568999999986532 2233345666 9999999998741 22221 222111
Q ss_pred cCCCcEEEEEeCCCCCC
Q psy13475 245 GREYQTRIILNKADQVK 261 (468)
Q Consensus 245 ~~~~~iiiVlNK~D~v~ 261 (468)
....|+++|.||+|+..
T Consensus 107 ~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 107 KNKIPVLIACNKQDLFT 123 (203)
T ss_pred cCCCCEEEEecchhhcc
Confidence 23689999999999864
No 172
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.25 E-value=4.1e-11 Score=109.40 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=68.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|++++..+.... .|+. |..+. ...+
T Consensus 7 ki~vvG~~~~GKTsli~~~~~~~~~~~~-----~~~~--------------------------------~~~~~--~~~~ 47 (170)
T cd04116 7 KVILLGDGGVGKSSLMNRYVTNKFDTQL-----FHTI--------------------------------GVEFL--NKDL 47 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcCc-----CCce--------------------------------eeEEE--EEEE
Confidence 4999999999999999999987664211 1111 00000 0011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh-------cCCCc
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK-------GREYQ 249 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~-------~~~~~ 249 (468)
.. ......+.|+||||... +......++..+|++++|+|.+....-+....++..+. ....|
T Consensus 48 ~~-~~~~~~l~i~D~~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p 116 (170)
T cd04116 48 EV-DGHFVTLQIWDTAGQER----------FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP 116 (170)
T ss_pred EE-CCeEEEEEEEeCCChHH----------HHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc
Confidence 11 12224578999999643 22334455789999999999875211112222222221 13469
Q ss_pred EEEEEeCCCCC
Q psy13475 250 TRIILNKADQV 260 (468)
Q Consensus 250 iiiVlNK~D~v 260 (468)
+++|+||+|+.
T Consensus 117 iilv~nK~Dl~ 127 (170)
T cd04116 117 FVVLGNKNDIP 127 (170)
T ss_pred EEEEEECcccc
Confidence 99999999986
No 173
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.25 E-value=4.4e-11 Score=125.56 Aligned_cols=135 Identities=19% Similarity=0.117 Sum_probs=79.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccC----------CCCCCCCceeEEEecCCCCccccCcccccCcccccccccc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLR----------TGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFG 166 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~----------~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg 166 (468)
.|+++|+.++|||||+++|+...-.+.... .|.....-.+.+++.-..++. -.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~-----------------~r 64 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAER-----------------EQ 64 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHh-----------------cC
Confidence 489999999999999999987643321100 111100122333322211111 11
Q ss_pred ccceeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC
Q psy13475 167 QGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR 246 (468)
Q Consensus 167 ~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~ 246 (468)
+.|++....... ....+++||||||+.+ |.......+..+|++++|+|+.. ++..+..+.+..+...
T Consensus 65 giTid~~~~~~~--~~~~~~~liDtPGh~~----------f~~~~~~~~~~aD~allVVda~~-G~~~qt~~~~~~~~~~ 131 (406)
T TIGR02034 65 GITIDVAYRYFS--TDKRKFIVADTPGHEQ----------YTRNMATGASTADLAVLLVDARK-GVLEQTRRHSYIASLL 131 (406)
T ss_pred CcCeEeeeEEEc--cCCeEEEEEeCCCHHH----------HHHHHHHHHhhCCEEEEEEECCC-CCccccHHHHHHHHHc
Confidence 223332222221 1235799999999654 33334445789999999999987 6666665555544443
Q ss_pred C-CcEEEEEeCCCCCC
Q psy13475 247 E-YQTRIILNKADQVK 261 (468)
Q Consensus 247 ~-~~iiiVlNK~D~v~ 261 (468)
+ .++++|+||+|+.+
T Consensus 132 ~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 132 GIRHVVLAVNKMDLVD 147 (406)
T ss_pred CCCcEEEEEEeccccc
Confidence 3 36889999999985
No 174
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.24 E-value=5e-11 Score=112.66 Aligned_cols=116 Identities=19% Similarity=0.263 Sum_probs=71.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|.+++..+.. . ..||. +..+ ....+
T Consensus 8 kivvvG~~~vGKTsli~~l~~~~~~~---~--~~~t~--------------------------------~~~~--~~~~~ 48 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRFADNTFSG---S--YITTI--------------------------------GVDF--KIRTV 48 (199)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---C--cCccc--------------------------------ccee--EEEEE
Confidence 59999999999999999999887642 1 01111 0000 01111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc--CCCcEEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG--REYQTRIIL 254 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~--~~~~iiiVl 254 (468)
.+. +....+.|+||||... +......++..+|++++|+|++....-.....+++.+.. ...|+++|.
T Consensus 49 ~~~-~~~~~l~l~D~~G~~~----------~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVg 117 (199)
T cd04110 49 EIN-GERVKLQIWDTAGQER----------FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVG 117 (199)
T ss_pred EEC-CEEEEEEEEeCCCchh----------HHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 111 1123588999999643 223345567889999999999762111122334444433 246899999
Q ss_pred eCCCCCCh
Q psy13475 255 NKADQVKP 262 (468)
Q Consensus 255 NK~D~v~~ 262 (468)
||+|+...
T Consensus 118 NK~Dl~~~ 125 (199)
T cd04110 118 NKNDDPER 125 (199)
T ss_pred ECcccccc
Confidence 99998743
No 175
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.24 E-value=7e-11 Score=108.17 Aligned_cols=111 Identities=17% Similarity=0.236 Sum_probs=70.9
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|.+|||||||++.+.+..+. ....||.. .. ...+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-----~~~~pt~g--------------------------------~~----~~~i~ 40 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-----ESVVPTTG--------------------------------FN----SVAIP 40 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-----ccccccCC--------------------------------cc----eEEEe
Confidence 789999999999999999987553 11223321 00 01111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh--cCCCcEEEEEe
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK--GREYQTRIILN 255 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~--~~~~~iiiVlN 255 (468)
. ....+.++||||... +......++..+|++++|+|++...--......+..+. ..+.|+++|.|
T Consensus 41 --~-~~~~l~i~Dt~G~~~----------~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~N 107 (164)
T cd04162 41 --T-QDAIMELLEIGGSQN----------LRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLAN 107 (164)
T ss_pred --e-CCeEEEEEECCCCcc----------hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEe
Confidence 1 125689999999754 22334556899999999999876211122233333332 24579999999
Q ss_pred CCCCCCh
Q psy13475 256 KADQVKP 262 (468)
Q Consensus 256 K~D~v~~ 262 (468)
|+|+...
T Consensus 108 K~Dl~~~ 114 (164)
T cd04162 108 KQDLPAA 114 (164)
T ss_pred CcCCcCC
Confidence 9998653
No 176
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.23 E-value=8.6e-11 Score=126.90 Aligned_cols=133 Identities=18% Similarity=0.258 Sum_probs=83.3
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCC--CCceeEEEecCCCCccccCcccccCccccccccc-cccce
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEP--SPAYFNILSWGESPTILDGTQLAADWTFSGLQKF-GQGLL 170 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~p--tT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~f-g~tt~ 170 (468)
+...|+|+|.+++|||||+++|+...-.+ ...|... .+... ...|+ ...++- |-+..
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i--~~~g~v~~~g~~~~----------------t~~D~--~~~E~~rgisi~ 69 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAI--QTAGAVKGRGSQRH----------------AKSDW--MEMEKQRGISIT 69 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCc--cccceecccccccc----------------ccCCC--CHHHHhcCCcEE
Confidence 44579999999999999999997532221 1111100 00000 01121 111110 11211
Q ss_pred eeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcE
Q psy13475 171 DRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQT 250 (468)
Q Consensus 171 ~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~i 250 (468)
.....+.. ....+.|+||||+.+ |...+...+..+|.+++|+|+.. ++......+++.+...+.|+
T Consensus 70 ~~~~~~~~---~~~~inliDTPG~~d----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~~~Pi 135 (527)
T TIGR00503 70 TSVMQFPY---RDCLVNLLDTPGHED----------FSEDTYRTLTAVDNCLMVIDAAK-GVETRTRKLMEVTRLRDTPI 135 (527)
T ss_pred EEEEEEee---CCeEEEEEECCChhh----------HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCE
Confidence 12222221 236799999999853 44556667889999999999987 66777777888777778899
Q ss_pred EEEEeCCCCC
Q psy13475 251 RIILNKADQV 260 (468)
Q Consensus 251 iiVlNK~D~v 260 (468)
++++||+|+.
T Consensus 136 ivviNKiD~~ 145 (527)
T TIGR00503 136 FTFMNKLDRD 145 (527)
T ss_pred EEEEECcccc
Confidence 9999999986
No 177
>KOG1489|consensus
Probab=99.23 E-value=2.5e-11 Score=120.13 Aligned_cols=121 Identities=23% Similarity=0.302 Sum_probs=79.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
-|.+||-||+|||||+|+|...+- + +.+|+|+.|. .-.+.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp-----k---------------------------Va~YaFTTL~--------P~iG~ 237 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKP-----K---------------------------VAHYAFTTLR--------PHIGT 237 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCC-----c---------------------------ccccceeeec--------cccce
Confidence 488999999999999999987653 2 1234444433 22222
Q ss_pred ecCCCCCcceEEEeCCCCchhhhh-hhhccchhHHHHHhhcccCEEEEEEcCCCC---CCCHhHHHHHHHHhc-----CC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQ-VERQFPFNDACQWFIDRADIIFLVYDPSKL---DVGPETEAILDQLKG-----RE 247 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~~~~aDlIllV~Da~~~---~i~~e~~~ll~~l~~-----~~ 247 (468)
.. .....++++-|.||+..+..+ -.-+|+| ...+++++.++||+|.+.. ...+....+...+.. ..
T Consensus 238 v~-yddf~q~tVADiPGiI~GAh~nkGlG~~F----LrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~ 312 (366)
T KOG1489|consen 238 VN-YDDFSQITVADIPGIIEGAHMNKGLGYKF----LRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLAD 312 (366)
T ss_pred ee-ccccceeEeccCccccccccccCcccHHH----HHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhcc
Confidence 21 122356999999999987544 2334444 3347899999999999874 223334444444432 23
Q ss_pred CcEEEEEeCCCCCCh
Q psy13475 248 YQTRIILNKADQVKP 262 (468)
Q Consensus 248 ~~iiiVlNK~D~v~~ 262 (468)
.|.+||.||+|..+.
T Consensus 313 rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 313 RPALIVANKIDLPEA 327 (366)
T ss_pred CceEEEEeccCchhH
Confidence 689999999998643
No 178
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.23 E-value=5.6e-11 Score=109.76 Aligned_cols=114 Identities=12% Similarity=0.260 Sum_probs=70.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||++.+++.++.... .||+. ..+. ..+
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f~~~~-----~~t~~--------------------------------~~~~---~~~ 43 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSFPDYH-----DPTIE--------------------------------DAYK---QQA 43 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCc-----CCccc--------------------------------ceEE---EEE
Confidence 4899999999999999999988774211 12211 0010 011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHH---HHHHh-cCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAI---LDQLK-GREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~l---l~~l~-~~~~~iii 252 (468)
.+ ......+.|+||||... +......++..+|++++|+|.+....-.....+ +.... ..+.|+++
T Consensus 44 ~~-~~~~~~l~i~Dt~G~~~----------~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piil 112 (172)
T cd04141 44 RI-DNEPALLDILDTAGQAE----------FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVL 112 (172)
T ss_pred EE-CCEEEEEEEEeCCCchh----------hHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 11 11114588999999753 223345567889999999999763211112222 33322 23579999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|.||+|+.+
T Consensus 113 vgNK~Dl~~ 121 (172)
T cd04141 113 VGNKVDLES 121 (172)
T ss_pred EEEChhhhh
Confidence 999999864
No 179
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.23 E-value=6.5e-11 Score=126.53 Aligned_cols=135 Identities=19% Similarity=0.132 Sum_probs=75.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccC----------CCCCCCCceeEEEecCCCCccccCcccccCcccccccccc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLR----------TGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFG 166 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~----------~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg 166 (468)
.|+++|++++|||||+++|+...-.+.... .|...-.-.+..++....+ ++-.
T Consensus 29 ~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~e-----------------Er~r 91 (474)
T PRK05124 29 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQA-----------------EREQ 91 (474)
T ss_pred EEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChH-----------------Hhhc
Confidence 499999999999999999997644322100 1110000011111111110 0111
Q ss_pred ccceeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC
Q psy13475 167 QGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR 246 (468)
Q Consensus 167 ~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~ 246 (468)
+.|.+.-.... .....+++||||||+.+ |.......+..+|++++|+|+.. ++.....+.+..+...
T Consensus 92 giTid~~~~~~--~~~~~~i~~iDTPGh~~----------f~~~~~~~l~~aD~allVVDa~~-G~~~qt~~~~~l~~~l 158 (474)
T PRK05124 92 GITIDVAYRYF--STEKRKFIIADTPGHEQ----------YTRNMATGASTCDLAILLIDARK-GVLDQTRRHSFIATLL 158 (474)
T ss_pred CCCeEeeEEEe--ccCCcEEEEEECCCcHH----------HHHHHHHHHhhCCEEEEEEECCC-CccccchHHHHHHHHh
Confidence 22222211111 12236899999999543 33334444789999999999987 5555444333333222
Q ss_pred C-CcEEEEEeCCCCCC
Q psy13475 247 E-YQTRIILNKADQVK 261 (468)
Q Consensus 247 ~-~~iiiVlNK~D~v~ 261 (468)
+ .++++|+||+|+++
T Consensus 159 g~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 159 GIKHLVVAVNKMDLVD 174 (474)
T ss_pred CCCceEEEEEeecccc
Confidence 2 47899999999984
No 180
>PRK10218 GTP-binding protein; Provisional
Probab=99.22 E-value=1.8e-10 Score=126.00 Aligned_cols=128 Identities=17% Similarity=0.263 Sum_probs=82.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|..++|||||+++|++..-...... .+.+ ++..+.+.+.. .|-|.......+
T Consensus 7 nIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~----~~~~--~v~D~~~~E~e-----------------rGiTi~~~~~~i 63 (607)
T PRK10218 7 NIAIIAHVDHGKTTLVDKLLQQSGTFDSRA----ETQE--RVMDSNDLEKE-----------------RGITILAKNTAI 63 (607)
T ss_pred EEEEECCCCCcHHHHHHHHHHhcCCccccc----ccce--eeecccccccc-----------------CceEEEEEEEEE
Confidence 599999999999999999997422110100 0000 11111111110 022222222222
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
.. ....+.||||||..+. ...+..++..+|.+++|+|+.. +...+...++..+...+.|.++|+||
T Consensus 64 ~~---~~~~inliDTPG~~df----------~~~v~~~l~~aDg~ILVVDa~~-G~~~qt~~~l~~a~~~gip~IVviNK 129 (607)
T PRK10218 64 KW---NDYRINIVDTPGHADF----------GGEVERVMSMVDSVLLVVDAFD-GPMPQTRFVTKKAFAYGLKPIVVINK 129 (607)
T ss_pred ec---CCEEEEEEECCCcchh----------HHHHHHHHHhCCEEEEEEeccc-CccHHHHHHHHHHHHcCCCEEEEEEC
Confidence 21 2367999999998663 3445566899999999999987 56677777777777778899999999
Q ss_pred CCCCC
Q psy13475 257 ADQVK 261 (468)
Q Consensus 257 ~D~v~ 261 (468)
+|...
T Consensus 130 iD~~~ 134 (607)
T PRK10218 130 VDRPG 134 (607)
T ss_pred cCCCC
Confidence 99863
No 181
>PLN03118 Rab family protein; Provisional
Probab=99.22 E-value=5.9e-11 Score=113.15 Aligned_cols=115 Identities=18% Similarity=0.276 Sum_probs=70.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|+|++..+...+ |++. .. -.+..+
T Consensus 16 kv~ivG~~~vGKTsli~~l~~~~~~~~~------~t~~--------------------------------~~--~~~~~~ 55 (211)
T PLN03118 16 KILLIGDSGVGKSSLLVSFISSSVEDLA------PTIG--------------------------------VD--FKIKQL 55 (211)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcC------CCce--------------------------------eE--EEEEEE
Confidence 5999999999999999999988663211 1110 00 011111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHH-HHHh----cCCCcEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAIL-DQLK----GREYQTR 251 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll-~~l~----~~~~~ii 251 (468)
... .....+.|+||||... +......++..+|++++|+|.+....-.....++ ..+. ....|++
T Consensus 56 ~~~-~~~~~l~l~Dt~G~~~----------~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~i 124 (211)
T PLN03118 56 TVG-GKRLKLTIWDTAGQER----------FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKM 124 (211)
T ss_pred EEC-CEEEEEEEEECCCchh----------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 211 1124689999999654 2233455678999999999997621111111111 1121 2346899
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|.||+|+...
T Consensus 125 lv~NK~Dl~~~ 135 (211)
T PLN03118 125 LVGNKVDRESE 135 (211)
T ss_pred EEEECcccccc
Confidence 99999998643
No 182
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.22 E-value=1.3e-10 Score=112.46 Aligned_cols=107 Identities=22% Similarity=0.237 Sum_probs=73.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCccc-ccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYS-QNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~-~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
..|+++|.+|+|||||+|.|++.... .++.. .++.
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~---------------------------------------~g~i----- 75 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDI---------------------------------------KGPI----- 75 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCccccc---------------------------------------cccE-----
Confidence 35999999999999999999885211 00000 1110
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcE-EEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQT-RII 253 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~i-iiV 253 (468)
.+. .+...+++++||||... .+...+..+|++++|+|+.. ++...+..++..+...+.|. ++|
T Consensus 76 ~i~--~~~~~~i~~vDtPg~~~-------------~~l~~ak~aDvVllviDa~~-~~~~~~~~i~~~l~~~g~p~vi~V 139 (225)
T cd01882 76 TVV--TGKKRRLTFIECPNDIN-------------AMIDIAKVADLVLLLIDASF-GFEMETFEFLNILQVHGFPRVMGV 139 (225)
T ss_pred EEE--ecCCceEEEEeCCchHH-------------HHHHHHHhcCEEEEEEecCc-CCCHHHHHHHHHHHHcCCCeEEEE
Confidence 011 11346799999998531 12233688999999999987 66777778888887767775 459
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|++..
T Consensus 140 vnK~D~~~~ 148 (225)
T cd01882 140 LTHLDLFKK 148 (225)
T ss_pred EeccccCCc
Confidence 999999843
No 183
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.21 E-value=7.7e-11 Score=127.25 Aligned_cols=136 Identities=19% Similarity=0.282 Sum_probs=84.5
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccc-cccceee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKF-GQGLLDR 172 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~f-g~tt~~~ 172 (468)
+...|+|+|++++|||||+++|+...-.+ .+.|... ....|.....|+ ...++- |-+....
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i--~~~g~v~--------------~~~~~~~~~~D~--~~~E~~rgiSi~~~ 70 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAI--QEAGTVK--------------GRKSGRHATSDW--MEMEKQRGISVTSS 70 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCc--cccceee--------------ccccCccccCCC--cHHHHhhCCceeee
Confidence 34479999999999999999998532211 1111100 000111111221 111110 1122122
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEE
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRI 252 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iii 252 (468)
+..+.. ....+++|||||..+ |...+..++..+|.+++|+|+.. ++......+++.+...+.|+++
T Consensus 71 ~~~~~~---~~~~inliDTPG~~d----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~~t~~l~~~~~~~~iPiiv 136 (526)
T PRK00741 71 VMQFPY---RDCLINLLDTPGHED----------FSEDTYRTLTAVDSALMVIDAAK-GVEPQTRKLMEVCRLRDTPIFT 136 (526)
T ss_pred eEEEEE---CCEEEEEEECCCchh----------hHHHHHHHHHHCCEEEEEEecCC-CCCHHHHHHHHHHHhcCCCEEE
Confidence 222221 125799999999865 33445566789999999999987 6777777888888778899999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
++||+|+..
T Consensus 137 ~iNK~D~~~ 145 (526)
T PRK00741 137 FINKLDRDG 145 (526)
T ss_pred EEECCcccc
Confidence 999999864
No 184
>PLN03110 Rab GTPase; Provisional
Probab=99.21 E-value=7.3e-11 Score=113.28 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=72.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+||||||+.|++.++.... .||. |..+.. ..+
T Consensus 14 Ki~ivG~~~vGKStLi~~l~~~~~~~~~-----~~t~--------------------------------g~~~~~--~~v 54 (216)
T PLN03110 14 KIVLIGDSGVGKSNILSRFTRNEFCLES-----KSTI--------------------------------GVEFAT--RTL 54 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC-----CCce--------------------------------eEEEEE--EEE
Confidence 4999999999999999999998764211 1111 111100 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~iiiV 253 (468)
.. ......+.|+||||... +......++..+|++++|+|.+....-+....++..+.. .+.|+++|
T Consensus 55 ~~-~~~~~~l~l~Dt~G~~~----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv 123 (216)
T PLN03110 55 QV-EGKTVKAQIWDTAGQER----------YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMA 123 (216)
T ss_pred EE-CCEEEEEEEEECCCcHH----------HHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 11 11224688999999543 334455668899999999999763211223334444433 45799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+..
T Consensus 124 ~nK~Dl~~ 131 (216)
T PLN03110 124 GNKSDLNH 131 (216)
T ss_pred EEChhccc
Confidence 99999864
No 185
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.21 E-value=8.3e-11 Score=115.46 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=70.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|.+++..+.. ...||+..+. .. .+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~-----~y~pTi~d~~---------------------------------~k--~~ 41 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE-----QYTPTIEDFH---------------------------------RK--LY 41 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC-----CCCCChhHhE---------------------------------EE--EE
Confidence 38999999999999999999877641 1223321111 00 01
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc-----------
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----------- 245 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----------- 245 (468)
.+ ......+.|+||||.... ......++..+|++|+|+|.+....-++...+++.+..
T Consensus 42 ~i-~~~~~~l~I~Dt~G~~~~----------~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~ 110 (247)
T cd04143 42 SI-RGEVYQLDILDTSGNHPF----------PAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKE 110 (247)
T ss_pred EE-CCEEEEEEEEECCCChhh----------hHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhccccccccc
Confidence 11 111246889999996542 22233346789999999999762111122233333321
Q ss_pred -CCCcEEEEEeCCCCCC
Q psy13475 246 -REYQTRIILNKADQVK 261 (468)
Q Consensus 246 -~~~~iiiVlNK~D~v~ 261 (468)
.+.|+++|.||+|+..
T Consensus 111 ~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 111 NVKIPMVICGNKADRDF 127 (247)
T ss_pred CCCCcEEEEEECccchh
Confidence 2479999999999864
No 186
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.21 E-value=6.2e-11 Score=102.78 Aligned_cols=70 Identities=26% Similarity=0.265 Sum_probs=47.5
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHH-----HHHHHhcCCCcEEEEEeCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEA-----ILDQLKGREYQTRIILNKAD 258 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~-----ll~~l~~~~~~iiiVlNK~D 258 (468)
..+.++||||...... .....+..+|++++|+|++.. .+.+... ..........|+++|+||+|
T Consensus 45 ~~~~l~D~~g~~~~~~----------~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D 113 (157)
T cd00882 45 VKLQIWDTAGQERFRS----------LRRLYYRGADGIILVYDVTDR-ESFENVKEWLLLILINKEGENIPIILVGNKID 113 (157)
T ss_pred EEEEEEecCChHHHHh----------HHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhhccCCCcEEEEEeccc
Confidence 5699999999875422 124457899999999999873 2222221 22233455689999999999
Q ss_pred CCChHH
Q psy13475 259 QVKPEE 264 (468)
Q Consensus 259 ~v~~~e 264 (468)
......
T Consensus 114 ~~~~~~ 119 (157)
T cd00882 114 LPEERV 119 (157)
T ss_pred cccccc
Confidence 876543
No 187
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.21 E-value=1.1e-10 Score=108.86 Aligned_cols=110 Identities=16% Similarity=0.207 Sum_probs=69.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||++.+...++.. ..||+. ..+ ..+
T Consensus 19 kv~lvG~~~vGKTsli~~~~~~~~~~------~~~T~~--------------------------------~~~----~~~ 56 (182)
T PTZ00133 19 RILMVGLDAAGKTTILYKLKLGEVVT------TIPTIG--------------------------------FNV----ETV 56 (182)
T ss_pred EEEEEcCCCCCHHHHHHHHhcCCccc------cCCccc--------------------------------cce----EEE
Confidence 59999999999999999997655531 123221 111 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHH-HHhc---CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILD-QLKG---REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~-~l~~---~~~~iii 252 (468)
.. ....+.++||||... +......++..+|++++|+|++....-.+....+. .+.. ...|+++
T Consensus 57 ~~---~~~~~~l~D~~G~~~----------~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piil 123 (182)
T PTZ00133 57 EY---KNLKFTMWDVGGQDK----------LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLV 123 (182)
T ss_pred EE---CCEEEEEEECCCCHh----------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEE
Confidence 11 114689999999754 22334556889999999999976321112222222 2222 2469999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|.||.|+..
T Consensus 124 v~NK~Dl~~ 132 (182)
T PTZ00133 124 FANKQDLPN 132 (182)
T ss_pred EEeCCCCCC
Confidence 999999864
No 188
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.21 E-value=6e-11 Score=108.37 Aligned_cols=103 Identities=17% Similarity=0.270 Sum_probs=63.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|.|.... ... | ++ +
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~------~---------------------------------~~-------v 34 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARK------T---------------------------------QA-------V 34 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--Ccc------c---------------------------------eE-------E
Confidence 5999999999999999999886421 000 0 01 0
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
.+... .+|||||........ .......+..+|++++|+|++... +.....+.+ + ....|+++|+||
T Consensus 35 ~~~~~-----~~iDtpG~~~~~~~~------~~~~~~~~~~ad~il~v~d~~~~~-s~~~~~~~~-~-~~~~~ii~v~nK 100 (158)
T PRK15467 35 EFNDK-----GDIDTPGEYFSHPRW------YHALITTLQDVDMLIYVHGANDPE-SRLPAGLLD-I-GVSKRQIAVISK 100 (158)
T ss_pred EECCC-----CcccCCccccCCHHH------HHHHHHHHhcCCEEEEEEeCCCcc-cccCHHHHh-c-cCCCCeEEEEEc
Confidence 11011 269999985432221 122233478999999999998632 221122222 2 235689999999
Q ss_pred CCCCC
Q psy13475 257 ADQVK 261 (468)
Q Consensus 257 ~D~v~ 261 (468)
+|+.+
T Consensus 101 ~Dl~~ 105 (158)
T PRK15467 101 TDMPD 105 (158)
T ss_pred cccCc
Confidence 99854
No 189
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.20 E-value=1.2e-11 Score=106.30 Aligned_cols=113 Identities=22% Similarity=0.327 Sum_probs=63.3
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+|+|..|+||||||++|++......... .+++ +.+.........
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~~~~~~---~~~~--------------------------------~~~~~~~~~~~~ 46 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFPDNSVP---EETS--------------------------------EITIGVDVIVVD 46 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-----------SST--------------------------------TSCEEEEEEEET
T ss_pred EEEECcCCCCHHHHHHHHhcCCCcccccc---cccC--------------------------------CCcEEEEEEEec
Confidence 78999999999999999999876410001 0000 111111111111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHH---HHHHhc--CCCcEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAI---LDQLKG--REYQTRI 252 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~l---l~~l~~--~~~~iii 252 (468)
. ....+.++|++|..... .....++..+|++++|+|.+....-....++ +..+.. ...|+++
T Consensus 47 --~-~~~~~~~~d~~g~~~~~----------~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piil 113 (119)
T PF08477_consen 47 --G-DRQSLQFWDFGGQEEFY----------SQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIIL 113 (119)
T ss_dssp --T-EEEEEEEEEESSSHCHH----------CTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEE
T ss_pred --C-CceEEEEEecCccceec----------ccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEE
Confidence 1 11238899999974421 1122337899999999999862101122223 333332 3489999
Q ss_pred EEeCCC
Q psy13475 253 ILNKAD 258 (468)
Q Consensus 253 VlNK~D 258 (468)
|.||.|
T Consensus 114 v~nK~D 119 (119)
T PF08477_consen 114 VGNKSD 119 (119)
T ss_dssp EEE-TC
T ss_pred EEeccC
Confidence 999998
No 190
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.20 E-value=6.9e-11 Score=108.35 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=68.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|||||||+|.++...+.. . ..||.. ..+...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~---~--~~~t~~------------------------------------~~~~~~ 40 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEK---K--YVATLG------------------------------------VEVHPL 40 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC---C--CCCcee------------------------------------eEEEEE
Confidence 48999999999999999999765531 1 111110 001111
Q ss_pred ec-CCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC--CCcEEEE
Q psy13475 177 QL-PHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR--EYQTRII 253 (468)
Q Consensus 177 ~~-~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~--~~~iiiV 253 (468)
.+ .......+.++||||..... .....+...+|++++|+|.+....-.....++..+... +.|+++|
T Consensus 41 ~~~~~~~~~~l~i~Dt~G~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv 110 (166)
T cd00877 41 DFHTNRGKIRFNVWDTAGQEKFG----------GLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLC 110 (166)
T ss_pred EEEECCEEEEEEEEECCCChhhc----------cccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 10 01122468899999975321 12233467899999999997621111222344444321 5899999
Q ss_pred EeCCCCC
Q psy13475 254 LNKADQV 260 (468)
Q Consensus 254 lNK~D~v 260 (468)
.||+|+.
T Consensus 111 ~nK~Dl~ 117 (166)
T cd00877 111 GNKVDIK 117 (166)
T ss_pred EEchhcc
Confidence 9999986
No 191
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.20 E-value=1.3e-10 Score=119.53 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=86.9
Q ss_pred EEEEeccCCCChhhHHHHHhCC----ccc-----------ccccCCCCCCCCceeEEEecCCCCccccCcccccCccccc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN----EYS-----------QNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSG 161 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~----~~~-----------~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~ 161 (468)
.|+|+|+.|+|||||||++.+. +++ .+++..|-+.||..+..|
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfv---------------------- 76 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFV---------------------- 76 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccc----------------------
Confidence 5999999999999999999999 555 334333333333221111
Q ss_pred cccccccceeeeEEeecCCCCCcceEEEeCCCCchhhhh----hh-----------hccchhHH----HHHhhc-ccCEE
Q psy13475 162 LQKFGQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQ----VE-----------RQFPFNDA----CQWFID-RADII 221 (468)
Q Consensus 162 L~~fg~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~----~~-----------r~~d~~~~----~~~~~~-~aDlI 221 (468)
|+ .-..+........++.||||+|+...... .+ ...+|.+. ++..+. ++|+.
T Consensus 77 ----P~----kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIg 148 (492)
T TIGR02836 77 ----PN----EAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIG 148 (492)
T ss_pred ----cC----cceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEE
Confidence 11 11122222233357999999999864311 11 12334333 456676 99999
Q ss_pred EEEE-cCCCC-----CCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 222 FLVY-DPSKL-----DVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 222 llV~-Da~~~-----~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
++|. |++-. +..+...++++.|+..++|+++|+||+|-.
T Consensus 149 ivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 149 VVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPY 193 (492)
T ss_pred EEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 9998 87511 235567789999999999999999999954
No 192
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.20 E-value=1.8e-10 Score=107.44 Aligned_cols=112 Identities=16% Similarity=0.208 Sum_probs=70.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|..|||||||++.+...++.. ..||+. ..+ ..
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~~------~~pt~g--------------------------------~~~----~~ 55 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIG--------------------------------FNV----ET 55 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCcc------ccCCcc--------------------------------eeE----EE
Confidence 359999999999999999998655531 123321 111 11
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH-hc---CCCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL-KG---REYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l-~~---~~~~ii 251 (468)
+.. . ...+.++||||... +......++..+|++++|+|++..+--.+....+..+ .. .+.|++
T Consensus 56 ~~~-~--~~~~~i~D~~Gq~~----------~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~pii 122 (181)
T PLN00223 56 VEY-K--NISFTVWDVGGQDK----------IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 122 (181)
T ss_pred EEE-C--CEEEEEEECCCCHH----------HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEE
Confidence 111 1 24689999999643 2334455688999999999998632111222222222 21 247999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|.||+|+.+.
T Consensus 123 lv~NK~Dl~~~ 133 (181)
T PLN00223 123 VFANKQDLPNA 133 (181)
T ss_pred EEEECCCCCCC
Confidence 99999998643
No 193
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.20 E-value=1.2e-10 Score=125.80 Aligned_cols=123 Identities=17% Similarity=0.206 Sum_probs=77.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcccccccccccccee-ee
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLD-RL 173 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~-~i 173 (468)
...|+++|++|+||||++|+|+|++...++.. . +.|+.. .+
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~---~-----------------------------------~~TTr~~ei 159 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAF---G-----------------------------------MGTTSVQEI 159 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCC---C-----------------------------------CCceEEEEE
Confidence 34699999999999999999999987654322 1 123321 11
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhh--hhhccchhHHHHHhhc--ccCEEEEEEcCCCCCCCHhHHHHHHHHhc----
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQ--VERQFPFNDACQWFID--RADIIFLVYDPSKLDVGPETEAILDQLKG---- 245 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~--~~r~~d~~~~~~~~~~--~aDlIllV~Da~~~~i~~e~~~ll~~l~~---- 245 (468)
.+.. . ...+.+|||||+.+.... ..+. +...+..++. .+|+||+|+.........+...+++.+..
T Consensus 160 ~~~i--d--G~~L~VIDTPGL~dt~~dq~~nee--ILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~ 233 (763)
T TIGR00993 160 EGLV--Q--GVKIRVIDTPGLKSSASDQSKNEK--ILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGP 233 (763)
T ss_pred EEEE--C--CceEEEEECCCCCccccchHHHHH--HHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCH
Confidence 1111 2 257999999999976321 2222 2333433433 58999999865543223344455655542
Q ss_pred -CCCcEEEEEeCCCCCC
Q psy13475 246 -REYQTRIILNKADQVK 261 (468)
Q Consensus 246 -~~~~iiiVlNK~D~v~ 261 (468)
.-..+|||+|.+|.+.
T Consensus 234 ~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 234 SIWFNAIVTLTHAASAP 250 (763)
T ss_pred HhHcCEEEEEeCCccCC
Confidence 2258999999999985
No 194
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.19 E-value=1.3e-10 Score=105.85 Aligned_cols=116 Identities=22% Similarity=0.319 Sum_probs=70.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||++.+++.++... ..||. +..+. ...+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~-----~~~t~--------------------------------~~~~~--~~~~ 42 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSS-----HISTI--------------------------------GVDFK--MKTI 42 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCC-----CCCce--------------------------------eeEEE--EEEE
Confidence 489999999999999999998877421 11211 10000 0111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.+. .....+.++||||... +......+...+|++++|+|.+....-++...+++.+. ....|+++|
T Consensus 43 ~~~-~~~~~l~i~D~~g~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilv 111 (161)
T cd04117 43 EVD-GIKVRIQIWDTAGQER----------YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILI 111 (161)
T ss_pred EEC-CEEEEEEEEeCCCcHh----------HHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 111 1124588999999543 22334455789999999999876211112223333332 234699999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
.||+|+...
T Consensus 112 gnK~Dl~~~ 120 (161)
T cd04117 112 GNKADEEQK 120 (161)
T ss_pred EECcccccc
Confidence 999998643
No 195
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.19 E-value=8.9e-11 Score=108.02 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=70.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|++++..+.. ....||+. ..+ ....+
T Consensus 6 kv~~vG~~~vGKTsli~~~~~~~f~~----~~~~~T~~--------------------------------~~~--~~~~~ 47 (169)
T cd01892 6 LCFVLGAKGSGKSALLRAFLGRSFSL----NAYSPTIK--------------------------------PRY--AVNTV 47 (169)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCc----ccCCCccC--------------------------------cce--EEEEE
Confidence 49999999999999999999987640 11123221 111 11112
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc-CCCcEEEEEe
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG-REYQTRIILN 255 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~-~~~~iiiVlN 255 (468)
.+.. ....+.++||+|-... ......+..++|++++|+|++....-.....+++.+.. .+.|+++|+|
T Consensus 48 ~~~~-~~~~l~~~d~~g~~~~----------~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~N 116 (169)
T cd01892 48 EVYG-QEKYLILREVGEDEVA----------ILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAA 116 (169)
T ss_pred EECC-eEEEEEEEecCCcccc----------cccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEE
Confidence 2221 1245788999986432 12233346899999999999762100112234444422 3579999999
Q ss_pred CCCCCC
Q psy13475 256 KADQVK 261 (468)
Q Consensus 256 K~D~v~ 261 (468)
|+|+..
T Consensus 117 K~Dl~~ 122 (169)
T cd01892 117 KADLDE 122 (169)
T ss_pred cccccc
Confidence 999864
No 196
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.19 E-value=1.2e-10 Score=127.64 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=76.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccc-cccceeeeEE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKF-GQGLLDRLRG 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~f-g~tt~~~i~~ 175 (468)
.++++|++++|||||+++|+...-.+.....+ . ... | +...++. |-|+......
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~-----~--~~~----------------D--~~~~ErerGiTi~~~~v~ 59 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMR-----E--QVL----------------D--SMDLERERGITIKAQAVR 59 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCcccccc-----c--ccc----------------C--CChHHHhcCCCeeeeEEE
Confidence 58999999999999999999853321100000 0 000 0 0000000 2222222111
Q ss_pred eecC--CCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 176 LQLP--HPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 176 ~~~~--~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
..+. +.....++||||||+.+. ......++..||++++|+|++. +.+.+....+..+...+.|+++|
T Consensus 60 ~~~~~~~g~~~~l~liDTPG~~dF----------~~~v~~~l~~aD~aILVvDat~-g~~~qt~~~~~~~~~~~ipiIiV 128 (595)
T TIGR01393 60 LNYKAKDGETYVLNLIDTPGHVDF----------SYEVSRSLAACEGALLLVDAAQ-GIEAQTLANVYLALENDLEIIPV 128 (595)
T ss_pred EEEEcCCCCEEEEEEEECCCcHHH----------HHHHHHHHHhCCEEEEEecCCC-CCCHhHHHHHHHHHHcCCCEEEE
Confidence 2111 122256899999999763 3344556889999999999987 55555554444444456799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+.+
T Consensus 129 iNKiDl~~ 136 (595)
T TIGR01393 129 INKIDLPS 136 (595)
T ss_pred EECcCCCc
Confidence 99999864
No 197
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.19 E-value=8.3e-11 Score=107.74 Aligned_cols=115 Identities=11% Similarity=0.174 Sum_probs=68.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||++.+++..+... ..||.. ..+. ..+
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~~~~-----~~~t~~--------------------------------~~~~---~~~ 42 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFPEV-----YVPTVF--------------------------------ENYV---ADI 42 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-----CCCccc--------------------------------cceE---EEE
Confidence 589999999999999999999776421 112210 1110 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH-HHHHHHHhc--CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET-EAILDQLKG--REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~-~~ll~~l~~--~~~~iiiV 253 (468)
.. ......+.++||||..... .....++..+|++++|+|.+....-+.. ..++..+.. .+.|+++|
T Consensus 43 ~~-~~~~~~l~i~Dt~G~~~~~----------~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv 111 (175)
T cd01870 43 EV-DGKQVELALWDTAGQEDYD----------RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 111 (175)
T ss_pred EE-CCEEEEEEEEeCCCchhhh----------hccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 11 1112358899999975321 1122346889999999998752100111 112333332 25799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
.||+|+...
T Consensus 112 ~nK~Dl~~~ 120 (175)
T cd01870 112 GNKKDLRND 120 (175)
T ss_pred eeChhcccC
Confidence 999998754
No 198
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.19 E-value=7.2e-11 Score=108.04 Aligned_cols=114 Identities=10% Similarity=0.144 Sum_probs=68.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE-E
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR-G 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~-~ 175 (468)
.|+++|.+|+|||||+|.+++.++... . .||+ .+.+. .
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~--~---~~t~------------------------------------~~~~~~~ 40 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEE--Y---VPTV------------------------------------FDHYAVS 40 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC--C---CCce------------------------------------eeeeEEE
Confidence 389999999999999999998876421 1 1111 11110 1
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH-HHHHHHHh--cCCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET-EAILDQLK--GREYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~-~~ll~~l~--~~~~~iii 252 (468)
+... .....+.++||||..... .....+...+|++++|+|......-+.. ..++..+. ..+.|+++
T Consensus 41 ~~~~-~~~~~~~i~Dt~G~~~~~----------~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piiv 109 (174)
T cd04135 41 VTVG-GKQYLLGLYDTAGQEDYD----------RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLL 109 (174)
T ss_pred EEEC-CEEEEEEEEeCCCccccc----------ccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEE
Confidence 1111 111347899999975421 1222346889999999998762110111 12233333 34579999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|.||+|+.+.
T Consensus 110 v~nK~Dl~~~ 119 (174)
T cd04135 110 VGTQIDLRDD 119 (174)
T ss_pred EeEchhhhcC
Confidence 9999998643
No 199
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.18 E-value=3.2e-10 Score=118.47 Aligned_cols=110 Identities=13% Similarity=0.100 Sum_probs=57.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEE-EecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNI-LSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~-i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
.|+++|.||||||||+|+|.+.+... +.. ..||-..+. +.+-... +.|..+..+.+ ...+
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~~-~~y---~f~t~~p~~g~~~v~~~--------~~~~r~~~~~~-------~~~~ 63 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVEI-ANY---PFTTIDPNVGVAYVRVE--------CPCKELGVKCN-------PRNG 63 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcccc-cCC---CCcceeeeeeeeeeccC--------Cchhhhhhhhc-------cccc
Confidence 59999999999999999999986532 211 112212221 1000000 00000000000 0000
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCC
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPS 228 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~ 228 (468)
.........++.|+||||+..+... .++ +.......+++||++++|+|+.
T Consensus 64 ~~~~~~~~~~i~i~D~aGl~~ga~~-g~g--lg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 64 KCIDGTRFIPVELIDVAGLVPGAHE-GRG--LGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cccCCcceeeEEEEEcCCcCCCccc-hhh--HHHHHHHHHHHCCEEEEEEeCC
Confidence 0000111245899999999764321 122 2233444589999999999996
No 200
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.18 E-value=1.1e-10 Score=108.30 Aligned_cols=115 Identities=7% Similarity=0.084 Sum_probs=71.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||++.+++..+.. ...||+. ..+.. .+
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f~~-----~~~pt~~--------------------------------~~~~~---~~ 42 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKFPS-----EYVPTVF--------------------------------DNYAV---TV 42 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-----CCCCcee--------------------------------eeeEE---EE
Confidence 48999999999999999999877631 1123321 11100 11
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhc--CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKG--REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~--~~~~iiiV 253 (468)
.+. .....+.|+||||.... ......+...+|++++|+|.+....-+... .++..+.. .+.|+++|
T Consensus 43 ~~~-~~~~~l~i~Dt~G~~~~----------~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilv 111 (175)
T cd01874 43 MIG-GEPYTLGLFDTAGQEDY----------DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLV 111 (175)
T ss_pred EEC-CEEEEEEEEECCCccch----------hhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 111 11246889999997542 222334578999999999987621111121 23333432 24799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
.||+|+.+.
T Consensus 112 gnK~Dl~~~ 120 (175)
T cd01874 112 GTQIDLRDD 120 (175)
T ss_pred EECHhhhhC
Confidence 999998654
No 201
>KOG0447|consensus
Probab=99.18 E-value=5.8e-10 Score=116.44 Aligned_cols=229 Identities=16% Similarity=0.226 Sum_probs=148.8
Q ss_pred HHHhhhhcccCCCCCcchhhHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhccccccCCCCCCcccc
Q psy13475 14 LQTQKQEDIEIPDNLRDKRHVHGILKLDEEFKEEEELLAKTIETTLKELKRLYDNAIKPLEITYKYRDLSNRHFADPEIF 93 (468)
Q Consensus 14 ~q~~~~~~~~~~~~~~~~~~ie~~l~~~ee~~~~d~~~~~~~~~v~~~l~~ly~~~~~ple~~~~~~~~~s~~l~d~~~~ 93 (468)
+.+|.+++.+++++.+....+...+-..++..- ....+-..|-..|.+.+-.|.. |+. .+.-+ +
T Consensus 243 l~tQ~kYQreLErlEKENkeLr~lll~kd~k~i-------~~kklKkSLIDMYSEVLD~Ls~---YD~----sYnt~--D 306 (980)
T KOG0447|consen 243 LHTQLKYQRILERLEKENKELRKLVLQKDDKGI-------HHRKLKKSLIDMYSEVLDVLSD---YDA----SYNTQ--D 306 (980)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhccchhh-------HHHHHHHHHHHHHHHHHHHHhc---ccc----ccccc--c
Confidence 446888999999888877777755555443221 2455666777777775443332 221 12222 2
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccC---cccccCc----ccc------
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDG---TQLAADW----TFS------ 160 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G---~~l~~D~----~f~------ 160 (468)
.-|.|+|||..|+||||.+..+....+.+ +..-+-.|..++-+...+.+..+.. ..---|+ ...
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFP---RGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFP---RGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCc---CCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 67899999999999999999999888764 3334566777777766655433210 0000010 011
Q ss_pred -----ccccccccceeeeEEeecCCCCCcceEEEeCCCCchhhhh---hhhccchhHHHHHhhcccCEEEEEEcCCCCCC
Q psy13475 161 -----GLQKFGQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQ---VERQFPFNDACQWFIDRADIIFLVYDPSKLDV 232 (468)
Q Consensus 161 -----~L~~fg~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~---~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i 232 (468)
.--+-|.|..+.+....+..|.+..+++||.||+.+.... -+..-++..+...++++.++||+++--...+.
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA 463 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA 463 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch
Confidence 1112255666667777778899999999999999876432 11222355778889999999999985443221
Q ss_pred -CHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 233 -GPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 233 -~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
......++.++..++..+|+|++|+|+..
T Consensus 464 ERSnVTDLVsq~DP~GrRTIfVLTKVDlAE 493 (980)
T KOG0447|consen 464 ERSIVTDLVSQMDPHGRRTIFVLTKVDLAE 493 (980)
T ss_pred hhhhHHHHHHhcCCCCCeeEEEEeecchhh
Confidence 12344677788888999999999999863
No 202
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.17 E-value=1.5e-10 Score=110.23 Aligned_cols=115 Identities=19% Similarity=0.305 Sum_probs=72.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|..||||||||+.+....+... ..||. |..+. ...+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~-----~~~Ti--------------------------------~~~~~--~~~i 42 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEA-----CKSGV--------------------------------GVDFK--IKTV 42 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCc-----CCCcc--------------------------------eeEEE--EEEE
Confidence 489999999999999999998776421 11211 11110 0111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.+. .....+.|+||+|... |......++..||++++|+|.+....-++...+++.+. ..+.|+++|
T Consensus 43 ~~~-~~~v~l~iwDtaGqe~----------~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilV 111 (202)
T cd04120 43 ELR-GKKIRLQIWDTAGQER----------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLV 111 (202)
T ss_pred EEC-CEEEEEEEEeCCCchh----------hHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 211 1125689999999643 33445667899999999999986321122223333333 345799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+..
T Consensus 112 gNK~DL~~ 119 (202)
T cd04120 112 GNKLDCET 119 (202)
T ss_pred EECccccc
Confidence 99999864
No 203
>PLN03108 Rab family protein; Provisional
Probab=99.17 E-value=1.4e-10 Score=110.74 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=70.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|.|++.++.... .||. +.++.. ..+
T Consensus 8 kivivG~~gvGKStLi~~l~~~~~~~~~-----~~ti--------------------------------~~~~~~--~~i 48 (210)
T PLN03108 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-----DLTI--------------------------------GVEFGA--RMI 48 (210)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC-----CCCc--------------------------------cceEEE--EEE
Confidence 4999999999999999999988764321 1111 001100 011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.+.. ....+.++||||... +......++..+|++++|+|++....-.....++..+. ....|+++|
T Consensus 49 ~~~~-~~i~l~l~Dt~G~~~----------~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv 117 (210)
T PLN03108 49 TIDN-KPIKLQIWDTAGQES----------FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLI 117 (210)
T ss_pred EECC-EEEEEEEEeCCCcHH----------HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 1111 113578999999643 22334455778999999999976321122223333332 235799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+..
T Consensus 118 ~nK~Dl~~ 125 (210)
T PLN03108 118 GNKCDLAH 125 (210)
T ss_pred EECccCcc
Confidence 99999864
No 204
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.17 E-value=9.4e-11 Score=109.82 Aligned_cols=115 Identities=18% Similarity=0.264 Sum_probs=70.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||++.+++..++... .||. +..+. ..+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~-----~~t~--------------------------------~~~~~---~~i 41 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVY-----EPTV--------------------------------FENYV---HDI 41 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCcc-----CCcc--------------------------------eeeeE---EEE
Confidence 4899999999999999999998774211 1211 01111 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHh-HH-HHHHHHhc--CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPE-TE-AILDQLKG--REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e-~~-~ll~~l~~--~~~~iii 252 (468)
... .....+.|+||||.... ......+...+|++++|+|.+... +-+ .. .++..+.. .+.|+++
T Consensus 42 ~~~-~~~~~l~i~Dt~G~~~~----------~~l~~~~~~~a~~~ilv~dv~~~~-sf~~~~~~~~~~i~~~~~~~piil 109 (189)
T cd04134 42 FVD-GLHIELSLWDTAGQEEF----------DRLRSLSYADTDVIMLCFSVDSPD-SLENVESKWLGEIREHCPGVKLVL 109 (189)
T ss_pred EEC-CEEEEEEEEECCCChhc----------cccccccccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhCCCCCEEE
Confidence 111 11246899999996432 122333468899999999987621 111 11 23444433 2579999
Q ss_pred EEeCCCCCChH
Q psy13475 253 ILNKADQVKPE 263 (468)
Q Consensus 253 VlNK~D~v~~~ 263 (468)
|.||+|+....
T Consensus 110 vgNK~Dl~~~~ 120 (189)
T cd04134 110 VALKCDLREAR 120 (189)
T ss_pred EEEChhhccCh
Confidence 99999987543
No 205
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.16 E-value=1.8e-10 Score=111.01 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=67.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCccc-ccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYS-QNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~-~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
.|+++|.+|+|||||++.+++..+. ... .|+. +..+.. ..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~-----~~t~--------------------------------~~~~~~--~~ 42 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAY-----DASG--------------------------------DDDTYE--RT 42 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCc-----CCCc--------------------------------cccceE--EE
Confidence 4899999999999999999876553 100 0110 001100 11
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhc-ccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFID-RADIIFLVYDPSKLDVGPETEAILDQLKG----REYQT 250 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~-~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~i 250 (468)
+.+. .....+.|+||||.... . ...+.. .+|++++|+|++....-.....++..+.. .+.|+
T Consensus 43 i~~~-~~~~~l~i~Dt~G~~~~---~---------~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~pi 109 (221)
T cd04148 43 VSVD-GEESTLVVIDHWEQEMW---T---------EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPI 109 (221)
T ss_pred EEEC-CEEEEEEEEeCCCcchH---H---------HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 1111 12256899999998611 1 112234 89999999999863211122334444433 35799
Q ss_pred EEEEeCCCCCCh
Q psy13475 251 RIILNKADQVKP 262 (468)
Q Consensus 251 iiVlNK~D~v~~ 262 (468)
++|.||+|+...
T Consensus 110 ilV~NK~Dl~~~ 121 (221)
T cd04148 110 ILVGNKSDLARS 121 (221)
T ss_pred EEEEEChhcccc
Confidence 999999998654
No 206
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.16 E-value=9.9e-11 Score=107.62 Aligned_cols=114 Identities=14% Similarity=0.192 Sum_probs=69.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE-E
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR-G 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~-~ 175 (468)
.|+++|.+|+|||||++.+++..+.. . ..||+ .+.+. .
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~--~---~~~t~------------------------------------~~~~~~~ 40 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPT--E---YVPTA------------------------------------FDNFSVV 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--C---CCCce------------------------------------eeeeeEE
Confidence 38999999999999999998876531 1 11221 11111 1
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH-HHHHHHHhc--CCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET-EAILDQLKG--REYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~-~~ll~~l~~--~~~~iii 252 (468)
+.+. .....+.++||||.... ......++..+|++++|+|.+....-+.. ..++..+.. .+.|+++
T Consensus 41 ~~~~-~~~~~~~i~Dt~G~~~~----------~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piil 109 (173)
T cd04130 41 VLVD-GKPVRLQLCDTAGQDEF----------DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIIL 109 (173)
T ss_pred EEEC-CEEEEEEEEECCCChhh----------ccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEE
Confidence 1111 11245889999997432 12223357899999999998762101111 234444443 2479999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|.||+|+...
T Consensus 110 v~nK~Dl~~~ 119 (173)
T cd04130 110 VGTQADLRTD 119 (173)
T ss_pred EeeChhhccC
Confidence 9999998643
No 207
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.16 E-value=2e-10 Score=107.03 Aligned_cols=114 Identities=10% Similarity=0.188 Sum_probs=70.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||++++++..+.. ...||.. ..+ ...+
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~-----~~~~t~~--------------------------------~~~---~~~~ 42 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPE-----TYVPTVF--------------------------------ENY---TASF 42 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCC-----CcCCceE--------------------------------EEE---EEEE
Confidence 48999999999999999999887642 1122210 011 0111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH-HHHHHHHhc--CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET-EAILDQLKG--REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~-~~ll~~l~~--~~~~iiiV 253 (468)
.+. .....+.|+||||.... ......+...+|++++|+|.+....-+.. ..++..++. ...|+++|
T Consensus 43 ~~~-~~~~~l~iwDt~G~~~~----------~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilV 111 (178)
T cd04131 43 EID-EQRIELSLWDTSGSPYY----------DNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLV 111 (178)
T ss_pred EEC-CEEEEEEEEECCCchhh----------hhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEE
Confidence 111 12246889999996432 12233457899999999999763211111 233333332 24699999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+.+
T Consensus 112 gnK~DL~~ 119 (178)
T cd04131 112 GCKTDLRT 119 (178)
T ss_pred EEChhhhc
Confidence 99999853
No 208
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.16 E-value=2.2e-10 Score=110.58 Aligned_cols=110 Identities=19% Similarity=0.255 Sum_probs=69.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||++++++.++.. ..||+. .. +...
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~------~~~Tig--------------------------------~~----~~~~ 39 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD------TVSTVG--------------------------------GA----FYLK 39 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC------CCCccc--------------------------------eE----EEEE
Confidence 38899999999999999999987741 112221 11 1101
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.. . ...+.||||||... +......+...+|++|+|+|.+....-......+..+. ..+.|+++|
T Consensus 40 ~~-~--~~~l~iwDt~G~e~----------~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlV 106 (220)
T cd04126 40 QW-G--PYNISIWDTAGREQ----------FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVV 106 (220)
T ss_pred Ee-e--EEEEEEEeCCCccc----------chhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 11 1 14589999999643 22334556789999999999986321112222222222 234689999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+..
T Consensus 107 gNK~DL~~ 114 (220)
T cd04126 107 GNKLDLTE 114 (220)
T ss_pred EECccccc
Confidence 99999864
No 209
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.16 E-value=2.1e-10 Score=110.45 Aligned_cols=116 Identities=14% Similarity=0.127 Sum_probs=70.7
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|||||||+++++..++.. ...||. |.++. .. .
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~-----~~~~ti--------------------------------g~~~~-~~-~ 54 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-----KYEPTI--------------------------------GVEVH-PL-D 54 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCC-----ccCCcc--------------------------------ceeEE-EE-E
Confidence 359999999999999999988766531 112221 11110 00 0
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc--CCCcEEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG--REYQTRII 253 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~--~~~~iiiV 253 (468)
+.. ......+.++||||... +......+...+|++++|+|.+....-.....++..+.. .+.|+++|
T Consensus 55 ~~~-~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilv 123 (219)
T PLN03071 55 FFT-NCGKIRFYCWDTAGQEK----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLC 123 (219)
T ss_pred EEE-CCeEEEEEEEECCCchh----------hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 111 11124689999999754 223344557899999999999862111122233333332 34799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+..
T Consensus 124 gNK~Dl~~ 131 (219)
T PLN03071 124 GNKVDVKN 131 (219)
T ss_pred EEchhhhh
Confidence 99999853
No 210
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.15 E-value=1.8e-10 Score=118.78 Aligned_cols=160 Identities=21% Similarity=0.379 Sum_probs=112.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
-|+|+-....|||||+..||.+.-. .+. .+-. .+++.+.|.+-... |-|.+.+-..+
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGt---f~~-~e~v-----------~ERvMDSnDlEkER--------GITILaKnTav 63 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGT---FRE-REEV-----------AERVMDSNDLEKER--------GITILAKNTAV 63 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccc---ccc-ccch-----------hhhhcCccchhhhc--------CcEEEecccee
Confidence 4999999999999999999987432 110 0000 01111211111111 33444444444
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
.+.. ..|.+|||||+.+..++++|. +..+|.+++++||.. +.-++.+.+++..-..+.+-|+|+||
T Consensus 64 ~~~~---~~INIvDTPGHADFGGEVERv----------l~MVDgvlLlVDA~E-GpMPQTrFVlkKAl~~gL~PIVVvNK 129 (603)
T COG1217 64 NYNG---TRINIVDTPGHADFGGEVERV----------LSMVDGVLLLVDASE-GPMPQTRFVLKKALALGLKPIVVINK 129 (603)
T ss_pred ecCC---eEEEEecCCCcCCccchhhhh----------hhhcceEEEEEEccc-CCCCchhhhHHHHHHcCCCcEEEEeC
Confidence 4322 679999999999877777776 788999999999998 66778888887666667788899999
Q ss_pred CCCCC--hHHHHHHhhhhhhccccccCCCCCCeeccCCC
Q psy13475 257 ADQVK--PEELMRVQGTLIWNISPLMSSSEPPVMYSTSL 293 (468)
Q Consensus 257 ~D~v~--~~el~~v~~~l~~~ls~~~~~pe~p~vy~~s~ 293 (468)
+|..+ +++.......++.++++-....+.|.+|.+..
T Consensus 130 iDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~ 168 (603)
T COG1217 130 IDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASAR 168 (603)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeecc
Confidence 99874 45555556778888998888899999998863
No 211
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.5e-10 Score=120.15 Aligned_cols=117 Identities=21% Similarity=0.339 Sum_probs=91.0
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
.+.|.|+++|+.-.|||||+.++-+.+++.. -. |+-| ..
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~--Ea--------------------------------------GGIT-Qh 41 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EA--------------------------------------GGIT-QH 41 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccc--cC--------------------------------------Ccee-eE
Confidence 3789999999999999999999999877521 00 1111 22
Q ss_pred eEEeecCCC--CCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcE
Q psy13475 173 LRGLQLPHP--LLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQT 250 (468)
Q Consensus 173 i~~~~~~~~--~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~i 250 (468)
+-...++.+ ....++|+||||+........|+ ++-+|++++|+++.. ++.++..+.++.++..+.|+
T Consensus 42 IGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRG----------a~vtDIaILVVa~dD-Gv~pQTiEAI~hak~a~vP~ 110 (509)
T COG0532 42 IGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARG----------ASVTDIAILVVAADD-GVMPQTIEAINHAKAAGVPI 110 (509)
T ss_pred eeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcC----------CccccEEEEEEEccC-CcchhHHHHHHHHHHCCCCE
Confidence 333333333 34789999999987754444555 578899999999998 78999999999999999999
Q ss_pred EEEEeCCCCCC
Q psy13475 251 RIILNKADQVK 261 (468)
Q Consensus 251 iiVlNK~D~v~ 261 (468)
++++||+|..+
T Consensus 111 iVAiNKiDk~~ 121 (509)
T COG0532 111 VVAINKIDKPE 121 (509)
T ss_pred EEEEecccCCC
Confidence 99999999984
No 212
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.14 E-value=3.1e-10 Score=106.99 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=71.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|..|+|||||++.+.+..+.. .. .||. +..+ ....+
T Consensus 8 KivviG~~~vGKTsll~~~~~~~~~~--~~---~~t~--------------------------------~~~~--~~~~i 48 (189)
T cd04121 8 KFLLVGDSDVGKGEILASLQDGSTES--PY---GYNM--------------------------------GIDY--KTTTI 48 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC--CC---CCcc--------------------------------eeEE--EEEEE
Confidence 49999999999999999999865531 11 0110 0000 01111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc--CCCcEEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG--REYQTRIIL 254 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~--~~~~iiiVl 254 (468)
.+ +.....+.|+||||... +......+...+|++++|+|.+....-+....+++.+.. ...|+++|.
T Consensus 49 ~~-~~~~~~l~iwDt~G~~~----------~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVG 117 (189)
T cd04121 49 LL-DGRRVKLQLWDTSGQGR----------FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVG 117 (189)
T ss_pred EE-CCEEEEEEEEeCCCcHH----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 11 11124688999999754 223345567899999999999863212233344444443 246999999
Q ss_pred eCCCCCC
Q psy13475 255 NKADQVK 261 (468)
Q Consensus 255 NK~D~v~ 261 (468)
||+|+..
T Consensus 118 NK~DL~~ 124 (189)
T cd04121 118 NRLHLAF 124 (189)
T ss_pred ECccchh
Confidence 9999864
No 213
>PTZ00416 elongation factor 2; Provisional
Probab=99.14 E-value=1.7e-10 Score=131.00 Aligned_cols=66 Identities=24% Similarity=0.350 Sum_probs=56.7
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
..++|+||||+.+ |...+...+..+|.+++|+|+.. ++......+++.+...+.|+++++||+|+.
T Consensus 92 ~~i~liDtPG~~~----------f~~~~~~al~~~D~ailVvda~~-g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 92 FLINLIDSPGHVD----------FSSEVTAALRVTDGALVVVDCVE-GVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred eEEEEEcCCCHHh----------HHHHHHHHHhcCCeEEEEEECCC-CcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 4699999999976 34445666899999999999988 788888899998888888999999999986
No 214
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.13 E-value=3.1e-10 Score=106.27 Aligned_cols=114 Identities=9% Similarity=0.200 Sum_probs=70.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|..++|||||++.+++..+.. ...||.. ..+. ..+
T Consensus 7 KivvvGd~~vGKTsli~~~~~~~f~~-----~~~pT~~--------------------------------~~~~---~~~ 46 (182)
T cd04172 7 KIVVVGDSQCGKTALLHVFAKDCFPE-----NYVPTVF--------------------------------ENYT---ASF 46 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-----ccCCcee--------------------------------eeeE---EEE
Confidence 49999999999999999999887642 1122211 1110 011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH-HHHHHHHhc--CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET-EAILDQLKG--REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~-~~ll~~l~~--~~~~iiiV 253 (468)
.+ ......+.|+||+|-.. +......+...+|++++|+|.+....-+.. ..++..++. ...|+++|
T Consensus 47 ~~-~~~~~~l~iwDtaG~e~----------~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilV 115 (182)
T cd04172 47 EI-DTQRIELSLWDTSGSPY----------YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 115 (182)
T ss_pred EE-CCEEEEEEEEECCCchh----------hHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
Confidence 11 11124689999999643 223344567899999999998763111111 233333332 24699999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+.+
T Consensus 116 gNK~DL~~ 123 (182)
T cd04172 116 GCKSDLRT 123 (182)
T ss_pred eEChhhhc
Confidence 99999853
No 215
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.12 E-value=2.6e-10 Score=105.54 Aligned_cols=114 Identities=8% Similarity=0.102 Sum_probs=69.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+.++++..+.. . ..||.. ..+... +
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f~~--~---~~~t~~--------------------------------~~~~~~---~ 42 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAFPG--E---YIPTVF--------------------------------DNYSAN---V 42 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--c---CCCcce--------------------------------eeeEEE---E
Confidence 48999999999999999999876631 1 112211 011001 1
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhc--CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKG--REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~--~~~~iiiV 253 (468)
.. ......+.|+||||... +......++..+|++|+|+|.+....-.... .++..+.. .+.|+++|
T Consensus 43 ~~-~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv 111 (174)
T cd01871 43 MV-DGKPVNLGLWDTAGQED----------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 111 (174)
T ss_pred EE-CCEEEEEEEEECCCchh----------hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 11 11124588999999643 2223344578999999999997632111111 23333322 24799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+.+
T Consensus 112 gnK~Dl~~ 119 (174)
T cd01871 112 GTKLDLRD 119 (174)
T ss_pred eeChhhcc
Confidence 99999864
No 216
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.12 E-value=4.6e-10 Score=123.09 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=51.2
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||+.+.. .....++..+|.+++|+|++. +...+....+..+...+.|+++|+||+|+..
T Consensus 74 ~~lnLiDTPGh~dF~----------~~v~~sl~~aD~aILVVDas~-gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 74 YILNLIDTPGHVDFS----------YEVSRSLAACEGALLVVDASQ-GVEAQTLANVYLALENDLEIIPVLNKIDLPA 140 (600)
T ss_pred EEEEEEECCCcHHHH----------HHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEEEECCCCCc
Confidence 569999999997743 334445788999999999987 5565555555555556789999999999864
No 217
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.11 E-value=5.7e-10 Score=106.35 Aligned_cols=117 Identities=16% Similarity=0.134 Sum_probs=73.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|..++|||||++.+++..+.. ...||... .+..+ .+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~-----~~~~Tig~--------------------------------~~~~k--~~ 42 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG-----RPSWTVGC--------------------------------SVDVK--HH 42 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-----CCCcceee--------------------------------eEEEE--EE
Confidence 38999999999999999999987642 12233211 11000 11
Q ss_pred ecC----CCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh--------
Q psy13475 177 QLP----HPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK-------- 244 (468)
Q Consensus 177 ~~~----~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~-------- 244 (468)
.+. ......+.|+||+|... +......+...+|++|+|+|.+....-+....++..+.
T Consensus 43 ~~~~~~~~~~~~~l~IwDtaG~e~----------~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~ 112 (202)
T cd04102 43 TYKEGTPEEKTFFVELWDVGGSES----------VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTG 112 (202)
T ss_pred EEcCCCCCCcEEEEEEEecCCchh----------HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccc
Confidence 111 11124588999999754 33445567889999999999987321122233333332
Q ss_pred --------------cCCCcEEEEEeCCCCCCh
Q psy13475 245 --------------GREYQTRIILNKADQVKP 262 (468)
Q Consensus 245 --------------~~~~~iiiVlNK~D~v~~ 262 (468)
....|+++|.||+|+.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 113 LLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred cccccccccccccCCCCceEEEEEECccchhh
Confidence 124699999999998643
No 218
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.10 E-value=5.1e-10 Score=104.54 Aligned_cols=113 Identities=14% Similarity=0.214 Sum_probs=68.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|..|+|||||++.+++..+.. ...||.. ..+.. ..+
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~-----~~~~T~g--------------------------------~~~~~--~~i 42 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDE-----DYIQTLG--------------------------------VNFME--KTI 42 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-----CCCCccc--------------------------------eEEEE--EEE
Confidence 38999999999999999999887642 1122221 11100 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~iiiV 253 (468)
...+ ....+.++||+|... +......+...||++++|+|.+....-.+...++..+.. ...| ++|
T Consensus 43 ~~~~-~~~~l~iwDt~G~~~----------~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilV 110 (182)
T cd04128 43 SIRG-TEITFSIWDLGGQRE----------FINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILV 110 (182)
T ss_pred EECC-EEEEEEEEeCCCchh----------HHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEE
Confidence 2111 124688999999654 223344568899999999998763211222234444432 2345 688
Q ss_pred EeCCCCC
Q psy13475 254 LNKADQV 260 (468)
Q Consensus 254 lNK~D~v 260 (468)
.||+|+.
T Consensus 111 gnK~Dl~ 117 (182)
T cd04128 111 GTKYDLF 117 (182)
T ss_pred EEchhcc
Confidence 9999986
No 219
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.10 E-value=5.6e-10 Score=107.90 Aligned_cols=111 Identities=12% Similarity=0.244 Sum_probs=70.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+||||||+.+++..++. ...||.. ..+. ..+
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f~~-----~y~pTi~--------------------------------~~~~---~~~ 42 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAYPG-----SYVPTVF--------------------------------ENYT---ASF 42 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-----ccCCccc--------------------------------cceE---EEE
Confidence 48999999999999999999887642 1223321 0110 011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHH----HHHhc--CCCcE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAIL----DQLKG--REYQT 250 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll----~~l~~--~~~~i 250 (468)
.+ ......+.|+||+|... |......+...+|++++|+|.+.. +.+..+. ..+.. .+.|+
T Consensus 43 ~~-~~~~v~L~iwDt~G~e~----------~~~l~~~~~~~~d~illvfdis~~---~Sf~~i~~~w~~~~~~~~~~~pi 108 (222)
T cd04173 43 EI-DKRRIELNMWDTSGSSY----------YDNVRPLAYPDSDAVLICFDISRP---ETLDSVLKKWQGETQEFCPNAKV 108 (222)
T ss_pred EE-CCEEEEEEEEeCCCcHH----------HHHHhHHhccCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhhCCCCCE
Confidence 11 12224688999999643 223334457899999999999863 3333332 22221 34699
Q ss_pred EEEEeCCCCCC
Q psy13475 251 RIILNKADQVK 261 (468)
Q Consensus 251 iiVlNK~D~v~ 261 (468)
++|.||+|+.+
T Consensus 109 iLVgnK~DL~~ 119 (222)
T cd04173 109 VLVGCKLDMRT 119 (222)
T ss_pred EEEEECccccc
Confidence 99999999864
No 220
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.10 E-value=6.4e-10 Score=108.20 Aligned_cols=113 Identities=14% Similarity=0.220 Sum_probs=70.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|..|||||||++.+++..+.. ...||. +..+. ..+
T Consensus 15 KIvvvGd~~VGKTsLi~r~~~~~F~~-----~y~pTi--------------------------------~~~~~---~~i 54 (232)
T cd04174 15 KLVLVGDVQCGKTAMLQVLAKDCYPE-----TYVPTV--------------------------------FENYT---AGL 54 (232)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-----CcCCce--------------------------------eeeeE---EEE
Confidence 49999999999999999999887642 112221 01110 011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHh-HHHHHHHHhc--CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPE-TEAILDQLKG--REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e-~~~ll~~l~~--~~~~iiiV 253 (468)
.+ ......+.|+||||... |......+...||++++|+|.+....-.. ...++..+.. ...|+++|
T Consensus 55 ~~-~~~~v~l~iwDTaG~e~----------~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilV 123 (232)
T cd04174 55 ET-EEQRVELSLWDTSGSPY----------YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLI 123 (232)
T ss_pred EE-CCEEEEEEEEeCCCchh----------hHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 11 11224689999999543 33334556889999999999976311111 1223344432 24689999
Q ss_pred EeCCCCC
Q psy13475 254 LNKADQV 260 (468)
Q Consensus 254 lNK~D~v 260 (468)
.||+|+.
T Consensus 124 gNK~DL~ 130 (232)
T cd04174 124 GCKTDLR 130 (232)
T ss_pred EECcccc
Confidence 9999985
No 221
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.09 E-value=3.5e-10 Score=113.21 Aligned_cols=126 Identities=25% Similarity=0.324 Sum_probs=83.7
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|.+||-||+|||||||++...+ ++ ++|+||+.|...=+. +.
T Consensus 162 VGLVG~PNaGKSTlls~vS~Ak-----PK---------------------------IadYpFTTL~PnLGv-------V~ 202 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAK-----PK---------------------------IADYPFTTLVPNLGV-------VR 202 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcC-----Cc---------------------------ccCCccccccCcccE-------EE
Confidence 8899999999999999997754 23 356666655433222 12
Q ss_pred cCCCCCcceEEEeCCCCchhhhh-hhhccchhHHHHHhhcccCEEEEEEcCCCCCC---CHhHHHHHHHHhcC-----CC
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQ-VERQFPFNDACQWFIDRADIIFLVYDPSKLDV---GPETEAILDQLKGR-----EY 248 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i---~~e~~~ll~~l~~~-----~~ 248 (468)
+ .....+++-|.||+.++..+ ..-+.+| ...++++-++++|+|.+..+- -+....+...|... ++
T Consensus 203 ~--~~~~sfv~ADIPGLIEGAs~G~GLG~~F----LrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K 276 (369)
T COG0536 203 V--DGGESFVVADIPGLIEGASEGVGLGLRF----LRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEK 276 (369)
T ss_pred e--cCCCcEEEecCcccccccccCCCccHHH----HHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccC
Confidence 1 22367999999999987655 3333333 344789999999999986442 22334444555433 47
Q ss_pred cEEEEEeCCCCCC-hHHHHHH
Q psy13475 249 QTRIILNKADQVK-PEELMRV 268 (468)
Q Consensus 249 ~iiiVlNK~D~v~-~~el~~v 268 (468)
|.++|+||+|+.. .+++...
T Consensus 277 ~~ivv~NKiD~~~~~e~~~~~ 297 (369)
T COG0536 277 PRIVVLNKIDLPLDEEELEEL 297 (369)
T ss_pred ceEEEEeccCCCcCHHHHHHH
Confidence 9999999999664 4444433
No 222
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.09 E-value=3e-10 Score=106.05 Aligned_cols=116 Identities=21% Similarity=0.314 Sum_probs=66.2
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+.+.|+++|+.|+|||+|+..|.......+ . |-...-
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T--~-----------------------------------------tS~e~n 38 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPT--V-----------------------------------------TSMENN 38 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B----------------------------------------------SSEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCe--e-----------------------------------------ccccCC
Confidence 467899999999999999999988744310 0 000111
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHH-------HHh--
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILD-------QLK-- 244 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~-------~l~-- 244 (468)
.+..........+.+||+||+..-+.+.-. ...+...+-.|+||+|++.. ..+...+.+ ...
T Consensus 39 ~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~-------~~~~~~~~k~IIfvvDSs~~--~~~~~~~Ae~Ly~iL~~~~~~ 109 (181)
T PF09439_consen 39 IAYNVNNSKGKKLRLVDIPGHPRLRSKLLD-------ELKYLSNAKGIIFVVDSSTD--QKELRDVAEYLYDILSDTEVQ 109 (181)
T ss_dssp EECCGSSTCGTCECEEEETT-HCCCHHHHH-------HHHHHGGEEEEEEEEETTTH--HHHHHHHHHHHHHHHHHHHCC
T ss_pred ceEEeecCCCCEEEEEECCCcHHHHHHHHH-------hhhchhhCCEEEEEEeCccc--hhhHHHHHHHHHHHHHhhhhc
Confidence 111222344467999999998654332111 01247789999999999742 333332222 222
Q ss_pred cCCCcEEEEEeCCCCCC
Q psy13475 245 GREYQTRIILNKADQVK 261 (468)
Q Consensus 245 ~~~~~iiiVlNK~D~v~ 261 (468)
....|++|+.||.|+..
T Consensus 110 ~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 110 KNKPPILIACNKQDLFT 126 (181)
T ss_dssp TT--EEEEEEE-TTSTT
T ss_pred cCCCCEEEEEeCccccc
Confidence 35679999999999874
No 223
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.09 E-value=5.9e-10 Score=100.01 Aligned_cols=106 Identities=19% Similarity=0.296 Sum_probs=71.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|+.++|||||+++|.|.+... .+ .|. +
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~--~K---------------------------------------Tq~-------i 34 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY--KK---------------------------------------TQA-------I 34 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc--Cc---------------------------------------cce-------e
Confidence 48999999999999999999987631 12 111 1
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC--CCHhHHHHHHHHhcCCCcEEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD--VGPETEAILDQLKGREYQTRIIL 254 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~--i~~e~~~ll~~l~~~~~~iiiVl 254 (468)
... =.+|||||---- ++. |.......+.+||+|++|.|++... .++.+..++ ..|++-|+
T Consensus 35 ~~~------~~~IDTPGEyiE----~~~--~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f------~~pvIGVI 96 (143)
T PF10662_consen 35 EYY------DNTIDTPGEYIE----NPR--FYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF------NKPVIGVI 96 (143)
T ss_pred Eec------ccEEECChhhee----CHH--HHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc------CCCEEEEE
Confidence 211 135999995421 222 3455556678999999999998731 344443332 47999999
Q ss_pred eCCCCC-ChHHHHHH
Q psy13475 255 NKADQV-KPEELMRV 268 (468)
Q Consensus 255 NK~D~v-~~~el~~v 268 (468)
||+|+. +.+++.+.
T Consensus 97 TK~Dl~~~~~~i~~a 111 (143)
T PF10662_consen 97 TKIDLPSDDANIERA 111 (143)
T ss_pred ECccCccchhhHHHH
Confidence 999998 44455544
No 224
>PRK13351 elongation factor G; Reviewed
Probab=99.08 E-value=4.2e-10 Score=125.68 Aligned_cols=131 Identities=21% Similarity=0.346 Sum_probs=83.0
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccc-cccccceeeeE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQ-KFGQGLLDRLR 174 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~-~fg~tt~~~i~ 174 (468)
..|+|+|..|+|||||+++|+...-.+ .+.|. +..|++. .|+ .... ..+-|......
T Consensus 9 rni~iiG~~~~GKTtL~~~ll~~~g~~--~~~~~-----------------v~~~~~~-~d~--~~~e~~r~~ti~~~~~ 66 (687)
T PRK13351 9 RNIGILAHIDAGKTTLTERILFYTGKI--HKMGE-----------------VEDGTTV-TDW--MPQEQERGITIESAAT 66 (687)
T ss_pred cEEEEECCCCCcchhHHHHHHHhcCCc--ccccc-----------------ccCCccc-CCC--CHHHHhcCCCcccceE
Confidence 369999999999999999998643211 11110 0001111 111 0000 01112111111
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIIL 254 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVl 254 (468)
.... . ...+.||||||..+ |...+..++..+|++++|+|++. +.......++..+...+.|+++|+
T Consensus 67 ~~~~-~--~~~i~liDtPG~~d----------f~~~~~~~l~~aD~~ilVvd~~~-~~~~~~~~~~~~~~~~~~p~iivi 132 (687)
T PRK13351 67 SCDW-D--NHRINLIDTPGHID----------FTGEVERSLRVLDGAVVVFDAVT-GVQPQTETVWRQADRYGIPRLIFI 132 (687)
T ss_pred EEEE-C--CEEEEEEECCCcHH----------HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCEEEEE
Confidence 1221 1 26799999999865 33456667899999999999987 567777778888877789999999
Q ss_pred eCCCCCCh
Q psy13475 255 NKADQVKP 262 (468)
Q Consensus 255 NK~D~v~~ 262 (468)
||+|+...
T Consensus 133 NK~D~~~~ 140 (687)
T PRK13351 133 NKMDRVGA 140 (687)
T ss_pred ECCCCCCC
Confidence 99998753
No 225
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.08 E-value=5.7e-10 Score=111.52 Aligned_cols=143 Identities=19% Similarity=0.287 Sum_probs=79.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccc-eeeeEE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGL-LDRLRG 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt-~~~i~~ 175 (468)
.|+|+|.+|+|||||||.|++..+...... ..+... .. ..++ ......
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~--~~~~~~-------------------~~----------~~~~~i~~~~~ 54 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSS--IPPPSA-------------------SI----------SRTLEIEERTV 54 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS-----------S-----------------------------------SCEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccccc--cccccc-------------------cc----------ccccceeeEEE
Confidence 499999999999999999999866422100 000000 00 0111 111111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhh----------hhhccchhHHHH---------HhhcccCEEEEEEcCCCCCCCHhH
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQ----------VERQFPFNDACQ---------WFIDRADIIFLVYDPSKLDVGPET 236 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~----------~~r~~d~~~~~~---------~~~~~aDlIllV~Da~~~~i~~e~ 236 (468)
....+....+++||||||+.+.... ++.. |..... ..=.++|++|++++++..++.+.+
T Consensus 55 ~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~q--f~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~D 132 (281)
T PF00735_consen 55 ELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQ--FDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLD 132 (281)
T ss_dssp EEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHH--HHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHH
T ss_pred EeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHH--HHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHH
Confidence 1111223356999999998753211 1111 111110 112367899999999765788999
Q ss_pred HHHHHHHhcCCCcEEEEEeCCCCCChHHHHHHhhhhh
Q psy13475 237 EAILDQLKGREYQTRIILNKADQVKPEELMRVQGTLI 273 (468)
Q Consensus 237 ~~ll~~l~~~~~~iiiVlNK~D~v~~~el~~v~~~l~ 273 (468)
.+.++.|... .++|-|+.|+|.+..+++.......+
T Consensus 133 i~~mk~Ls~~-vNvIPvIaKaD~lt~~el~~~k~~i~ 168 (281)
T PF00735_consen 133 IEFMKRLSKR-VNVIPVIAKADTLTPEELQAFKQRIR 168 (281)
T ss_dssp HHHHHHHTTT-SEEEEEESTGGGS-HHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccEEeEEecccccCHHHHHHHHHHHH
Confidence 9999988775 68999999999999888765544433
No 226
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.07 E-value=1.1e-09 Score=115.60 Aligned_cols=68 Identities=25% Similarity=0.234 Sum_probs=44.9
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC--CCHhHHHHHHHHhcCC-CcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD--VGPETEAILDQLKGRE-YQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~--i~~e~~~ll~~l~~~~-~~iiiVlNK~D~v 260 (468)
..++||||||..+ |.......+..+|++++|+|++... ...+....+..+...+ .++++|+||+|+.
T Consensus 85 ~~i~iiDtpGh~~----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 85 YEVTIVDCPGHRD----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSV 154 (426)
T ss_pred eEEEEEECCCHHH----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhcc
Confidence 5799999999643 3333444578899999999998731 2223333222222223 4789999999997
Q ss_pred C
Q psy13475 261 K 261 (468)
Q Consensus 261 ~ 261 (468)
+
T Consensus 155 ~ 155 (426)
T TIGR00483 155 N 155 (426)
T ss_pred C
Confidence 4
No 227
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.05 E-value=1e-09 Score=124.88 Aligned_cols=66 Identities=26% Similarity=0.370 Sum_probs=56.7
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
..++||||||+.+ |...+...+..+|.+++|+|+.. ++....+.+++.+...+.|+++++||+|..
T Consensus 98 ~~inliDtPGh~d----------F~~e~~~al~~~D~ailVvda~~-Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVD----------FSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHH----------HHHHHHHHHhhcCEEEEEEECCC-CCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 5689999999976 44445556789999999999998 788888889998888889999999999987
No 228
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.05 E-value=1.3e-09 Score=102.32 Aligned_cols=114 Identities=9% Similarity=0.105 Sum_probs=70.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|..|+|||||++.++...+... ..||. +..+.. .+
T Consensus 5 ki~~vG~~~vGKTsli~~~~~~~f~~~-----~~~t~--------------------------------~~~~~~---~~ 44 (191)
T cd01875 5 KCVVVGDGAVGKTCLLICYTTNAFPKE-----YIPTV--------------------------------FDNYSA---QT 44 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcC-----CCCce--------------------------------EeeeEE---EE
Confidence 599999999999999999998776421 11221 111100 11
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhc--CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKG--REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~--~~~~iiiV 253 (468)
.+ ......+.|+||||... +......+...+|++++|+|.+....-+... .++..+.. .+.|+++|
T Consensus 45 ~~-~~~~~~l~i~Dt~G~e~----------~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilv 113 (191)
T cd01875 45 AV-DGRTVSLNLWDTAGQEE----------YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLV 113 (191)
T ss_pred EE-CCEEEEEEEEECCCchh----------hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 11 12224688999999744 2233445678999999999997622111111 12232322 35799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||.|+.+
T Consensus 114 gNK~DL~~ 121 (191)
T cd01875 114 GTKKDLRN 121 (191)
T ss_pred EeChhhhc
Confidence 99999864
No 229
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.05 E-value=2.2e-09 Score=112.73 Aligned_cols=71 Identities=23% Similarity=0.201 Sum_probs=50.0
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCC-CHhHHHHHHHHhcCC-CcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDV-GPETEAILDQLKGRE-YQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i-~~e~~~ll~~l~~~~-~~iiiVlNK~D~v~ 261 (468)
..++|+||||..+ |.......+..+|++++|+|++. +. ..+..+.+..+...+ .++++|+||+|+.+
T Consensus 80 ~~i~liDtPGh~~----------f~~~~~~g~~~aD~aIlVVDa~~-g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 80 RRVSFVDAPGHET----------LMATMLSGAALMDGALLVIAANE-PCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred cEEEEEECCCHHH----------HHHHHHHHHHHCCEEEEEEECCC-CccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 5799999999754 33334455678999999999986 33 444555555554443 46899999999987
Q ss_pred hHHH
Q psy13475 262 PEEL 265 (468)
Q Consensus 262 ~~el 265 (468)
.+..
T Consensus 149 ~~~~ 152 (406)
T TIGR03680 149 KEKA 152 (406)
T ss_pred HHHH
Confidence 5443
No 230
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.04 E-value=1e-09 Score=102.19 Aligned_cols=114 Identities=11% Similarity=0.125 Sum_probs=71.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+++|||||++.++...+.. . ..||. +..+... +
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~--~---~~~Ti--------------------------------~~~~~~~---~ 42 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPT--D---YIPTV--------------------------------FDNFSAN---V 42 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--C---CCCcc--------------------------------eeeeEEE---E
Confidence 38999999999999999999877742 1 12222 1111111 1
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH-HHHHHHHhc--CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET-EAILDQLKG--REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~-~~ll~~l~~--~~~~iiiV 253 (468)
.. +.....+.|+||+|... +......+...+|++++|+|.+....-+.. ..++..++. .+.|+++|
T Consensus 43 ~~-~~~~v~l~i~Dt~G~~~----------~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilv 111 (176)
T cd04133 43 SV-DGNTVNLGLWDTAGQED----------YNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLV 111 (176)
T ss_pred EE-CCEEEEEEEEECCCCcc----------ccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 11 22225689999999743 223344457899999999999763211111 234444432 35799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+.+
T Consensus 112 gnK~Dl~~ 119 (176)
T cd04133 112 GTKLDLRD 119 (176)
T ss_pred EeChhhcc
Confidence 99999864
No 231
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.02 E-value=2.2e-09 Score=114.03 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=50.2
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCC-------CHhHHHHHHHHhcCCCc-EEEEEe
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDV-------GPETEAILDQLKGREYQ-TRIILN 255 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i-------~~e~~~ll~~l~~~~~~-iiiVlN 255 (468)
..++||||||+.+ |.......+..+|.+++|+|+.. +. ..+..+.+..+...+.| +++++|
T Consensus 85 ~~i~lIDtPGh~~----------f~~~~~~g~~~aD~ailVVda~~-G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vN 153 (446)
T PTZ00141 85 YYFTIIDAPGHRD----------FIKNMITGTSQADVAILVVASTA-GEFEAGISKDGQTREHALLAFTLGVKQMIVCIN 153 (446)
T ss_pred eEEEEEECCChHH----------HHHHHHHhhhhcCEEEEEEEcCC-CceecccCCCccHHHHHHHHHHcCCCeEEEEEE
Confidence 6799999999654 44455556889999999999987 43 35667777777777765 678999
Q ss_pred CCCC
Q psy13475 256 KADQ 259 (468)
Q Consensus 256 K~D~ 259 (468)
|+|.
T Consensus 154 KmD~ 157 (446)
T PTZ00141 154 KMDD 157 (446)
T ss_pred cccc
Confidence 9994
No 232
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.02 E-value=3.9e-09 Score=112.19 Aligned_cols=77 Identities=18% Similarity=0.126 Sum_probs=53.8
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC-CcEEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE-YQTRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~-~~iiiVlNK~D~v~~ 262 (468)
..++||||||+.+ |...+...+..+|.+++|+|+.......+..+.+..+...+ .++++|+||+|+++.
T Consensus 117 ~~i~~IDtPGH~~----------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 117 RHVSFVDCPGHDI----------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKE 186 (460)
T ss_pred ceEeeeeCCCHHH----------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCH
Confidence 4799999999643 44555666789999999999987324454444444443333 468999999999976
Q ss_pred HHHHHHhh
Q psy13475 263 EELMRVQG 270 (468)
Q Consensus 263 ~el~~v~~ 270 (468)
+.+.+.+.
T Consensus 187 ~~~~~~~~ 194 (460)
T PTZ00327 187 AQAQDQYE 194 (460)
T ss_pred HHHHHHHH
Confidence 65554443
No 233
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.01 E-value=1.9e-09 Score=120.97 Aligned_cols=67 Identities=24% Similarity=0.370 Sum_probs=54.7
Q ss_pred CcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 183 LEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 183 l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
..+++||||||+.+ |...+..++..+|++++|+|+.. ++..+...++..+...+.|.++|+||+|..
T Consensus 85 ~~~i~liDTPG~~~----------f~~~~~~al~~aD~~llVvda~~-g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 85 EYLINLIDTPGHVD----------FGGDVTRAMRAVDGAIVVVCAVE-GVMPQTETVLRQALKENVKPVLFINKVDRL 151 (720)
T ss_pred ceEEEEEeCCCccc----------cHHHHHHHHHhcCEEEEEEecCC-CCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence 36799999999976 33445667899999999999987 667777788877766677889999999986
No 234
>PTZ00258 GTP-binding protein; Provisional
Probab=99.01 E-value=1e-09 Score=113.86 Aligned_cols=104 Identities=19% Similarity=0.121 Sum_probs=58.9
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCc-eeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPA-YFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~-~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
...|+|||.||+|||||+|+|.+.+. .++.. |.|. ..+.-+. ...|..+..|.
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~----pftTi~p~~g~v-----------~~~d~r~~~l~---------- 74 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQV-PAENF----PFCTIDPNTARV-----------NVPDERFDWLC---------- 74 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcc-cccCC----CCCcccceEEEE-----------ecccchhhHHH----------
Confidence 33699999999999999999988764 22222 2221 1111100 00000000000
Q ss_pred EEeecC-CCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCC
Q psy13475 174 RGLQLP-HPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPS 228 (468)
Q Consensus 174 ~~~~~~-~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~ 228 (468)
...-+ .....++.|+||||+..+... .++ +.......++++|++++|+|+.
T Consensus 75 -~~~~~~~~~~aqi~lvDtpGLv~ga~~-g~g--Lg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 75 -KHFKPKSIVPAQLDITDIAGLVKGASE-GEG--LGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred -HHcCCcccCCCCeEEEECCCcCcCCcc-hhH--HHHHHHHHHHHCCEEEEEEeCC
Confidence 00000 111256999999999865332 222 3344556688999999999985
No 235
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.00 E-value=6.6e-10 Score=110.51 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=56.1
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|.||||||||+|+|.+.+. .++... .||-.++. |.....|..+..|. ...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~p---ftTi~p~~-----------g~v~v~d~r~~~l~-----------~~~ 54 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYP---FCTIEPNV-----------GIVPVPDERLDKLA-----------EIV 54 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-cccccc---ccchhcee-----------eeEEeccchhhhHH-----------HHh
Confidence 57999999999999999999876 333221 11111111 00000000000010 000
Q ss_pred cCC-CCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCC
Q psy13475 178 LPH-PLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSK 229 (468)
Q Consensus 178 ~~~-~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~ 229 (468)
-+. ....++.|+||||+..+..+ .++ +.......++++|++++|+|+..
T Consensus 55 ~~~k~~~~~i~lvD~pGl~~~a~~-~~g--lg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 55 KPKKIVPATIEFVDIAGLVKGASK-GEG--LGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred CCceeeeeEEEEEECCCcCCCCch-hhH--HHHHHHHHHHhCCEEEEEEeCcC
Confidence 000 01136999999999865432 222 22334455789999999999854
No 236
>PRK12740 elongation factor G; Reviewed
Probab=99.00 E-value=1.8e-09 Score=120.25 Aligned_cols=67 Identities=25% Similarity=0.367 Sum_probs=54.5
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||..+ |...+..++..+|++++|+|++. +.......++..+...+.|+++|+||+|...
T Consensus 60 ~~i~liDtPG~~~----------~~~~~~~~l~~aD~vllvvd~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 60 HKINLIDTPGHVD----------FTGEVERALRVLDGAVVVVCAVG-GVEPQTETVWRQAEKYGVPRIIFVNKMDRAG 126 (668)
T ss_pred EEEEEEECCCcHH----------HHHHHHHHHHHhCeEEEEEeCCC-CcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 6799999999865 33345556789999999999987 5677777777777777889999999999874
No 237
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.99 E-value=1.2e-09 Score=98.52 Aligned_cols=114 Identities=22% Similarity=0.339 Sum_probs=70.8
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|..++|||||++.+.+..+.... .||. | .+......
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~~~~~~-----~~t~--------------------------------~---~~~~~~~~ 41 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGEFPENY-----IPTI--------------------------------G---IDSYSKEV 41 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSTTSSS-----ETTS--------------------------------S---EEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhhcccccc-----cccc--------------------------------c---cccccccc
Confidence 799999999999999999988764211 1111 0 11111111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH---hcCCCcEEEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL---KGREYQTRIIL 254 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l---~~~~~~iiiVl 254 (468)
........+.|+||||... +......+...+|++++|+|.+....-.....++..+ .....|+++|.
T Consensus 42 ~~~~~~~~l~i~D~~g~~~----------~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg 111 (162)
T PF00071_consen 42 SIDGKPVNLEIWDTSGQER----------FDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVG 111 (162)
T ss_dssp EETTEEEEEEEEEETTSGG----------GHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEE
T ss_pred ccccccccccccccccccc----------ccccccccccccccccccccccccccccccccccccccccccccccceeee
Confidence 1122235699999999643 2233456688999999999987521111122333333 33357999999
Q ss_pred eCCCCCC
Q psy13475 255 NKADQVK 261 (468)
Q Consensus 255 NK~D~v~ 261 (468)
||.|+.+
T Consensus 112 ~K~D~~~ 118 (162)
T PF00071_consen 112 NKSDLSD 118 (162)
T ss_dssp ETTTGGG
T ss_pred ccccccc
Confidence 9999875
No 238
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.99 E-value=1.4e-09 Score=101.68 Aligned_cols=113 Identities=12% Similarity=0.178 Sum_probs=66.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|++|+|||||+|.+....+.. . ..||+. ..+.. .+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~---~--~~~t~~--------------------------------~~~~~---~~ 42 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE---E--YHPTVF--------------------------------ENYVT---DC 42 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc---c--cCCccc--------------------------------ceEEE---EE
Confidence 48999999999999999998655431 1 111110 01111 11
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhc--CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKG--REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~--~~~~iiiV 253 (468)
.+. .....+.++||||..... .....+...+|++++++|.+....-.... .++..+.. ...|+++|
T Consensus 43 ~~~-~~~~~l~i~Dt~g~~~~~----------~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilv 111 (187)
T cd04129 43 RVD-GKPVQLALWDTAGQEEYE----------RLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILV 111 (187)
T ss_pred EEC-CEEEEEEEEECCCChhcc----------ccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 111 112357899999964321 11122467899999999986532111111 23333332 24799999
Q ss_pred EeCCCCC
Q psy13475 254 LNKADQV 260 (468)
Q Consensus 254 lNK~D~v 260 (468)
.||+|+.
T Consensus 112 gnK~Dl~ 118 (187)
T cd04129 112 GLKKDLR 118 (187)
T ss_pred eeChhhh
Confidence 9999985
No 239
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.99 E-value=1.5e-09 Score=122.00 Aligned_cols=130 Identities=20% Similarity=0.245 Sum_probs=81.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcccccccccccccee-eeE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLD-RLR 174 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~-~i~ 174 (468)
..|+++|+.++|||||+++|+...-.+.. . ..|.+...|+ ...++..+.+.+ ...
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~-~---------------------~~g~~~~~D~--~~~E~~rgiTi~~~~~ 76 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISE-E---------------------LAGEQLALDF--DEEEQARGITIKAANV 76 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcch-h---------------------hcCcceecCc--cHHHHHhhhhhhccce
Confidence 36999999999999999999875332111 0 0111111221 111111111111 111
Q ss_pred Eeec-CCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 175 GLQL-PHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 175 ~~~~-~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
...+ .......++||||||+.+. ...+...+..+|.+++|+|+.. ++..+...++..+...+.|.+++
T Consensus 77 ~~~~~~~~~~~~i~liDtPG~~df----------~~~~~~~l~~~D~avlVvda~~-g~~~~t~~~~~~~~~~~~~~iv~ 145 (731)
T PRK07560 77 SMVHEYEGKEYLINLIDTPGHVDF----------GGDVTRAMRAVDGAIVVVDAVE-GVMPQTETVLRQALRERVKPVLF 145 (731)
T ss_pred EEEEEecCCcEEEEEEcCCCccCh----------HHHHHHHHHhcCEEEEEEECCC-CCCccHHHHHHHHHHcCCCeEEE
Confidence 1111 1122367999999999873 3445666889999999999988 67778888888766666788999
Q ss_pred EeCCCCC
Q psy13475 254 LNKADQV 260 (468)
Q Consensus 254 lNK~D~v 260 (468)
+||+|..
T Consensus 146 iNK~D~~ 152 (731)
T PRK07560 146 INKVDRL 152 (731)
T ss_pred EECchhh
Confidence 9999976
No 240
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.98 E-value=1.4e-09 Score=111.88 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=57.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEE--EecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNI--LSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~--i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
.|++||.||||||||+|+|.|.+ +.++... .||-..+. +...+ ...+.+.
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt~~~-~~v~nyp---ftTi~p~~G~~~v~d------------------------~r~~~l~ 55 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTKAG-AEAANYP---FCTIEPNVGVVPVPD------------------------PRLDKLA 55 (364)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-Ceecccc---cccccceEEEEEecc------------------------ccchhhH
Confidence 59999999999999999999987 3333321 11111111 11000 0000000
Q ss_pred EeecCC-CCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCC
Q psy13475 175 GLQLPH-PLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSK 229 (468)
Q Consensus 175 ~~~~~~-~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~ 229 (468)
...-|. ....++.|+||||+..+... .++ +.......++++|++++|+|+..
T Consensus 56 ~~~~p~~~~~a~i~lvD~pGL~~~a~~-g~g--lg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 56 EIVKPKKIVPATIEFVDIAGLVKGASK-GEG--LGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred HhcCCccccCceEEEEECCCCCCCCCh-HHH--HHHHHHHHHHhCCEEEEEEeCCc
Confidence 001010 01136999999999864322 222 33445556889999999999853
No 241
>PLN00023 GTP-binding protein; Provisional
Probab=98.98 E-value=2.9e-09 Score=107.65 Aligned_cols=128 Identities=15% Similarity=0.184 Sum_probs=74.8
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCce-e--EEEecCCCCccccCcccccCcccccccccccccee
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAY-F--NILSWGESPTILDGTQLAADWTFSGLQKFGQGLLD 171 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~-~--~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~ 171 (468)
.-.|+++|..||||||||+.+++..+.. ...||... + ..+.++... .+ ..
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~-----~~~pTIG~d~~ik~I~~~~~~---------------------~~-~~ 73 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSSIA-----RPPQTIGCTVGVKHITYGSPG---------------------SS-SN 73 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCccc-----ccCCceeeeEEEEEEEECCcc---------------------cc-cc
Confidence 3359999999999999999999876631 11233211 0 001111000 00 00
Q ss_pred eeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC-----
Q psy13475 172 RLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR----- 246 (468)
Q Consensus 172 ~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~----- 246 (468)
.+ .........+.|+||+|... |......+...+|++|+|+|.+....-.....+++.+...
T Consensus 74 ~i---k~d~~k~v~LqIWDTAGqEr----------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~ 140 (334)
T PLN00023 74 SI---KGDSERDFFVELWDVSGHER----------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSA 140 (334)
T ss_pred cc---cccCCceEEEEEEECCCChh----------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhccccc
Confidence 00 00001113488999999643 3344566789999999999987632222333444444432
Q ss_pred ----------CCcEEEEEeCCCCCCh
Q psy13475 247 ----------EYQTRIILNKADQVKP 262 (468)
Q Consensus 247 ----------~~~iiiVlNK~D~v~~ 262 (468)
..|+++|.||+|+...
T Consensus 141 p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 141 PLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred ccccccccCCCCcEEEEEECcccccc
Confidence 3689999999998643
No 242
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.96 E-value=3.2e-09 Score=98.59 Aligned_cols=111 Identities=23% Similarity=0.273 Sum_probs=71.6
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
-.|+++|..||||||+++.|...+... ..||. .-.+..
T Consensus 15 ~~ililGl~~sGKTtll~~l~~~~~~~------~~pT~------------------------------------g~~~~~ 52 (175)
T PF00025_consen 15 IKILILGLDGSGKTTLLNRLKNGEISE------TIPTI------------------------------------GFNIEE 52 (175)
T ss_dssp EEEEEEESTTSSHHHHHHHHHSSSEEE------EEEES------------------------------------SEEEEE
T ss_pred EEEEEECCCccchHHHHHHhhhccccc------cCccc------------------------------------ccccce
Confidence 359999999999999999998765532 11211 112223
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH-h---cCCCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL-K---GREYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l-~---~~~~~ii 251 (468)
+... ...+.++|.+|-.... .....+...+|+|+||+|++...--.+....+..+ . -.+.|++
T Consensus 53 i~~~---~~~~~~~d~gG~~~~~----------~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piL 119 (175)
T PF00025_consen 53 IKYK---GYSLTIWDLGGQESFR----------PLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPIL 119 (175)
T ss_dssp EEET---TEEEEEEEESSSGGGG----------GGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEE
T ss_pred eeeC---cEEEEEEecccccccc----------ccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEE
Confidence 3322 2579999999965422 22334478999999999998632112333333333 2 2357999
Q ss_pred EEEeCCCCCC
Q psy13475 252 IILNKADQVK 261 (468)
Q Consensus 252 iVlNK~D~v~ 261 (468)
+++||.|..+
T Consensus 120 Il~NK~D~~~ 129 (175)
T PF00025_consen 120 ILANKQDLPD 129 (175)
T ss_dssp EEEESTTSTT
T ss_pred EEeccccccC
Confidence 9999999865
No 243
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.96 E-value=5.3e-09 Score=110.06 Aligned_cols=70 Identities=23% Similarity=0.198 Sum_probs=50.2
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCC-CHhHHHHHHHHhcCC-CcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDV-GPETEAILDQLKGRE-YQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i-~~e~~~ll~~l~~~~-~~iiiVlNK~D~v~ 261 (468)
..++|+||||..+ |.......+..+|++++|+|++. +. ..+....+..+...+ .++++|+||+|+.+
T Consensus 85 ~~i~liDtPG~~~----------f~~~~~~~~~~~D~~llVVDa~~-~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 85 RRVSFVDAPGHET----------LMATMLSGAALMDGAILVIAANE-PCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVS 153 (411)
T ss_pred cEEEEEECCCHHH----------HHHHHHHHHhhCCEEEEEEECCC-CCCChhHHHHHHHHHHcCCCcEEEEEEeecccc
Confidence 5799999999643 33444555678899999999987 33 455555555555444 46899999999986
Q ss_pred hHH
Q psy13475 262 PEE 264 (468)
Q Consensus 262 ~~e 264 (468)
.++
T Consensus 154 ~~~ 156 (411)
T PRK04000 154 KER 156 (411)
T ss_pred chh
Confidence 544
No 244
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.96 E-value=3.2e-09 Score=100.99 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=46.4
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc--CCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG--REYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~--~~~~iiiVlNK~D~v~ 261 (468)
..+.|+||||... |......+...+|++++|+|.+....-.....++..+.. .+.|+++|.||+|+..
T Consensus 44 ~~l~iwDt~G~e~----------~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 113 (200)
T smart00176 44 IRFNVWDTAGQEK----------FGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD 113 (200)
T ss_pred EEEEEEECCCchh----------hhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 5689999999754 333445568899999999999873111222234444433 3579999999999753
No 245
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.94 E-value=5.3e-09 Score=99.01 Aligned_cols=66 Identities=9% Similarity=0.104 Sum_probs=43.2
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhc--CCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKG--REYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~--~~~~iiiVlNK~D~v 260 (468)
..+.|+||+|.... . ...+...+|++++|+|.+....-+... .++..++. ...|+++|.||+|+.
T Consensus 66 v~l~iwDTaG~~~~---~---------~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 66 VSLRLWDTFGDHDK---D---------RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred EEEEEEeCCCChhh---h---------hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 56899999997531 1 122468999999999987622111222 23444432 246999999999986
Q ss_pred C
Q psy13475 261 K 261 (468)
Q Consensus 261 ~ 261 (468)
+
T Consensus 134 ~ 134 (195)
T cd01873 134 Y 134 (195)
T ss_pred c
Confidence 4
No 246
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.94 E-value=6e-09 Score=99.11 Aligned_cols=117 Identities=20% Similarity=0.254 Sum_probs=74.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|..|+|||||+|+|.+..+...... |. +..+... .
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~~~~~~~~-----t~--------------------------------~~~~~~~---~ 46 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDEFPEGYPP-----TI--------------------------------GNLDPAK---T 46 (219)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccCCC-----ce--------------------------------eeeeEEE---E
Confidence 599999999999999999999887532211 10 0011100 0
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCC-HhHHHHHHHHhc---CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVG-PETEAILDQLKG---REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~-~e~~~ll~~l~~---~~~~iii 252 (468)
.........+.++||+|..+. ......+...++.+++++|....... +....+...+.. ...|+++
T Consensus 47 ~~~~~~~~~~~~~Dt~gq~~~----------~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iil 116 (219)
T COG1100 47 IEPYRRNIKLQLWDTAGQEEY----------RSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILL 116 (219)
T ss_pred EEeCCCEEEEEeecCCCHHHH----------HHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEE
Confidence 111111245889999998763 34455567899999999998752222 223344444443 2479999
Q ss_pred EEeCCCCCChH
Q psy13475 253 ILNKADQVKPE 263 (468)
Q Consensus 253 VlNK~D~v~~~ 263 (468)
|.||+|+....
T Consensus 117 v~nK~Dl~~~~ 127 (219)
T COG1100 117 VGNKIDLFDEQ 127 (219)
T ss_pred Eecccccccch
Confidence 99999998654
No 247
>KOG1490|consensus
Probab=98.91 E-value=3.8e-09 Score=109.93 Aligned_cols=138 Identities=18% Similarity=0.185 Sum_probs=84.9
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
..++++++|.||+|||||+|.+...++.. .+ |+-||..-+
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvev-qp---------------------------------------YaFTTksL~ 206 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEV-QP---------------------------------------YAFTTKLLL 206 (620)
T ss_pred CcCeEEEecCCCCCcHhhccccccccccc-CC---------------------------------------cccccchhh
Confidence 56789999999999999999988766531 11 133444434
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCC-CCCHh-HHHHHHHHhc--CCCc
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKL-DVGPE-TEAILDQLKG--REYQ 249 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~-~i~~e-~~~ll~~l~~--~~~~ 249 (468)
.|... .....+.++|||||++..-+--...++..+ ...+.---+|||++|-+.. +.+-+ -..+.+.++. .+.|
T Consensus 207 vGH~d--ykYlrwQViDTPGILD~plEdrN~IEmqsI-TALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~ 283 (620)
T KOG1490|consen 207 VGHLD--YKYLRWQVIDTPGILDRPEEDRNIIEMQII-TALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKV 283 (620)
T ss_pred hhhhh--hheeeeeecCCccccCcchhhhhHHHHHHH-HHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCc
Confidence 33331 122468899999999754331111112221 2223333568889997642 23322 3356666664 3578
Q ss_pred EEEEEeCCCCCChHHHHHHhhhhhh
Q psy13475 250 TRIILNKADQVKPEELMRVQGTLIW 274 (468)
Q Consensus 250 iiiVlNK~D~v~~~el~~v~~~l~~ 274 (468)
+|+|+||+|...++++.+-..+++.
T Consensus 284 ~IlvlNK~D~m~~edL~~~~~~ll~ 308 (620)
T KOG1490|consen 284 TILVLNKIDAMRPEDLDQKNQELLQ 308 (620)
T ss_pred eEEEeecccccCccccCHHHHHHHH
Confidence 9999999999988777655444433
No 248
>KOG0094|consensus
Probab=98.91 E-value=8.7e-09 Score=95.76 Aligned_cols=123 Identities=18% Similarity=0.309 Sum_probs=80.7
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
++-.|+|+|..||||||||+..+-..+-.. . .+| . |-.|....
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~--Y---qAT--------------------I------------GiDFlskt 63 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNT--Y---QAT--------------------I------------GIDFLSKT 63 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhccc--c---cce--------------------e------------eeEEEEEE
Confidence 444699999999999999999987766310 0 000 0 22232222
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc-CC---Cc
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG-RE---YQ 249 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~-~~---~~ 249 (468)
..+ .+.-..+.+|||+|... |...+-.+++++.++++|+|.+.-..-......++.+.. ++ .-
T Consensus 64 ~~l---~d~~vrLQlWDTAGQER----------FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~vi 130 (221)
T KOG0094|consen 64 MYL---EDRTVRLQLWDTAGQER----------FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVI 130 (221)
T ss_pred EEE---cCcEEEEEEEecccHHH----------HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceE
Confidence 111 11125689999999533 667788889999999999998763323344556665543 22 34
Q ss_pred EEEEEeCCCCCChHHHH
Q psy13475 250 TRIILNKADQVKPEELM 266 (468)
Q Consensus 250 iiiVlNK~D~v~~~el~ 266 (468)
+++|.||.|++++.+..
T Consensus 131 I~LVGnKtDL~dkrqvs 147 (221)
T KOG0094|consen 131 IFLVGNKTDLSDKRQVS 147 (221)
T ss_pred EEEEcccccccchhhhh
Confidence 56689999999876543
No 249
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.90 E-value=2.3e-09 Score=97.55 Aligned_cols=30 Identities=37% Similarity=0.286 Sum_probs=25.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLR 126 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~ 126 (468)
.|+++|+||+|||||||+|+|.+...++..
T Consensus 104 ~v~~~G~~nvGKStliN~l~~~~~~~~~~~ 133 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLRSKKVCKVAPI 133 (157)
T ss_pred EEEEEeCCCCChHHHHHHHhcCCceeeCCC
Confidence 588999999999999999999887654443
No 250
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.90 E-value=1.4e-08 Score=96.86 Aligned_cols=67 Identities=9% Similarity=0.111 Sum_probs=42.3
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCC-HhHHHHHHHHh--cCCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVG-PETEAILDQLK--GREYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~-~e~~~ll~~l~--~~~~~iiiVlNK~D~v 260 (468)
..+.++||||.... ......+...+|.+++|+|.+.. .+ .....++..+. ....|+++|.||+|+.
T Consensus 58 i~i~~~Dt~g~~~~----------~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 58 ICFNVWDTAGQEKF----------GGLRDGYYIKGQCAIIMFDVTSR-ITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred EEEEEEECCCchhh----------hhhhHHHhccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 46889999996432 12234456788999999998762 12 11122233222 1246899999999986
Q ss_pred C
Q psy13475 261 K 261 (468)
Q Consensus 261 ~ 261 (468)
+
T Consensus 127 ~ 127 (215)
T PTZ00132 127 D 127 (215)
T ss_pred c
Confidence 4
No 251
>KOG0410|consensus
Probab=98.90 E-value=1.7e-08 Score=100.46 Aligned_cols=123 Identities=22% Similarity=0.259 Sum_probs=80.8
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
..|+|++||.+|+|||||||+|.+..+.+ . ..- |..| .+| .
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p---~------drL-----------------------FATL----DpT---~ 217 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYP---N------DRL-----------------------FATL----DPT---L 217 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCc---c------chh-----------------------heec----cch---h
Confidence 56899999999999999999999654421 1 111 1111 111 1
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhh-hhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc---
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQ-VERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ--- 249 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~--- 249 (468)
....+|+. ..+.+.||-|+.+.-.- +-.. | +.+..-+..||+++.|+|.+...+..+-..++..+++.+.|
T Consensus 218 h~a~Lpsg--~~vlltDTvGFisdLP~~LvaA--F-~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~p 292 (410)
T KOG0410|consen 218 HSAHLPSG--NFVLLTDTVGFISDLPIQLVAA--F-QATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEP 292 (410)
T ss_pred hhccCCCC--cEEEEeechhhhhhCcHHHHHH--H-HHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHH
Confidence 22344444 77999999999875322 2233 3 44555578999999999999865555555677777765542
Q ss_pred ----EEEEEeCCCCC
Q psy13475 250 ----TRIILNKADQV 260 (468)
Q Consensus 250 ----iiiVlNK~D~v 260 (468)
++=|-||+|..
T Consensus 293 kl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 293 KLQNMIEVDNKIDYE 307 (410)
T ss_pred HHhHHHhhccccccc
Confidence 45577787764
No 252
>KOG0092|consensus
Probab=98.89 E-value=3.9e-09 Score=97.87 Aligned_cols=115 Identities=20% Similarity=0.335 Sum_probs=77.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|..|||||||+-.....++... .+||+ |..|+.+...+
T Consensus 7 KvvLLG~~~VGKSSlV~Rfvk~~F~e~-----~e~TI--------------------------------GaaF~tktv~~ 49 (200)
T KOG0092|consen 7 KVVLLGDSGVGKSSLVLRFVKDQFHEN-----IEPTI--------------------------------GAAFLTKTVTV 49 (200)
T ss_pred EEEEECCCCCCchhhhhhhhhCccccc-----ccccc--------------------------------ccEEEEEEEEe
Confidence 599999999999999999888777521 23332 44454443333
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc---EEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ---TRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~---iiiV 253 (468)
. .....+.|+||.|.-. +...+..+.+.|+++|+|+|.++.+.-...+..++.|+....| +.+|
T Consensus 50 ~---~~~ikfeIWDTAGQER----------y~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialv 116 (200)
T KOG0092|consen 50 D---DNTIKFEIWDTAGQER----------YHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALV 116 (200)
T ss_pred C---CcEEEEEEEEcCCccc----------ccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 2 2235688999999643 3445666689999999999998743222344566666654444 4458
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+..
T Consensus 117 GNK~DL~~ 124 (200)
T KOG0092|consen 117 GNKADLLE 124 (200)
T ss_pred cchhhhhh
Confidence 99999986
No 253
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.89 E-value=1.7e-08 Score=102.27 Aligned_cols=144 Identities=15% Similarity=0.216 Sum_probs=86.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccc-eeeeEE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGL-LDRLRG 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt-~~~i~~ 175 (468)
.|+++|+.|.|||||||.|++..+.......+..+.+. ..+. ......
T Consensus 25 ~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~-------------------------------~~~~~i~~~~~ 73 (373)
T COG5019 25 TIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGT-------------------------------SPTLEIKITKA 73 (373)
T ss_pred EEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccC-------------------------------CcceEEEeeee
Confidence 49999999999999999999985431100000001000 0000 000111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhh---hhhccc-hhHHHHH--------------hhcccCEEEEEEcCCCCCCCHhHH
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQ---VERQFP-FNDACQW--------------FIDRADIIFLVYDPSKLDVGPETE 237 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~---~~r~~d-~~~~~~~--------------~~~~aDlIllV~Da~~~~i~~e~~ 237 (468)
.......-.++++|||||+++.-.. .+-..+ +.+.-.. .=.+++++||++.++.-++++-+.
T Consensus 74 ~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI 153 (373)
T COG5019 74 ELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI 153 (373)
T ss_pred eeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH
Confidence 1112233356999999999875321 000000 0011111 123678999999988778899898
Q ss_pred HHHHHHhcCCCcEEEEEeCCCCCChHHHHHHhhhh
Q psy13475 238 AILDQLKGREYQTRIILNKADQVKPEELMRVQGTL 272 (468)
Q Consensus 238 ~ll~~l~~~~~~iiiVlNK~D~v~~~el~~v~~~l 272 (468)
++++.+.+. ..+|=|+-|+|....+++.......
T Consensus 154 e~Mk~ls~~-vNlIPVI~KaD~lT~~El~~~K~~I 187 (373)
T COG5019 154 EAMKRLSKR-VNLIPVIAKADTLTDDELAEFKERI 187 (373)
T ss_pred HHHHHHhcc-cCeeeeeeccccCCHHHHHHHHHHH
Confidence 888888764 6788899999999988876654433
No 254
>KOG0462|consensus
Probab=98.88 E-value=9.6e-09 Score=108.03 Aligned_cols=154 Identities=20% Similarity=0.225 Sum_probs=94.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
-++||-+...|||||...||..--.+. ... .+++..+...+-. .-|-|...+...+
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~-~~~---------------~q~q~LDkl~vER--------ERGITIkaQtasi 117 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTID-NNI---------------GQEQVLDKLQVER--------ERGITIKAQTASI 117 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCC-CCC---------------chhhhhhhhhhhh--------hcCcEEEeeeeEE
Confidence 488899999999999999987532210 000 0011111000000 0023333333344
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
...+....-+.+|||||+.+...+++|. +.-||.+|+|+||++ ++..+....+....+.+..+|.|+||
T Consensus 118 fy~~~~~ylLNLIDTPGHvDFs~EVsRs----------laac~G~lLvVDA~q-GvqAQT~anf~lAfe~~L~iIpVlNK 186 (650)
T KOG0462|consen 118 FYKDGQSYLLNLIDTPGHVDFSGEVSRS----------LAACDGALLVVDASQ-GVQAQTVANFYLAFEAGLAIIPVLNK 186 (650)
T ss_pred EEEcCCceEEEeecCCCcccccceeheh----------hhhcCceEEEEEcCc-CchHHHHHHHHHHHHcCCeEEEeeec
Confidence 4444444669999999999987777766 678999999999998 77777765554444567899999999
Q ss_pred CCCCC--hHHHHHHhhhhhhccccccCCCCCCeeccCC
Q psy13475 257 ADQVK--PEELMRVQGTLIWNISPLMSSSEPPVMYSTS 292 (468)
Q Consensus 257 ~D~v~--~~el~~v~~~l~~~ls~~~~~pe~p~vy~~s 292 (468)
+|+.. +++...... .+++.|..+.+|++.
T Consensus 187 IDlp~adpe~V~~q~~-------~lF~~~~~~~i~vSA 217 (650)
T KOG0462|consen 187 IDLPSADPERVENQLF-------ELFDIPPAEVIYVSA 217 (650)
T ss_pred cCCCCCCHHHHHHHHH-------HHhcCCccceEEEEe
Confidence 99874 344333322 223344446666665
No 255
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.88 E-value=1.4e-08 Score=98.66 Aligned_cols=154 Identities=18% Similarity=0.334 Sum_probs=84.8
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|+.++||||..+.+.+.-.+--+.+. |.|..-....+.
T Consensus 2 iLLmG~~~SGKTSi~~vIF~~~~p~dT~~L--------------------------------------~~T~~ve~~~v~ 43 (232)
T PF04670_consen 2 ILLMGPRRSGKTSIRSVIFHKYSPRDTLRL--------------------------------------EPTIDVEKSHVR 43 (232)
T ss_dssp EEEEESTTSSHHHHHHHHHS---GGGGGG-------------------------------------------SEEEEEEE
T ss_pred EEEEcCCCCChhhHHHHHHcCCCchhcccc--------------------------------------CCcCCceEEEEe
Confidence 799999999999999999987443222221 222221112222
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH---HHHHHHhc--CCCcEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE---AILDQLKG--REYQTRI 252 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~---~ll~~l~~--~~~~iii 252 (468)
....-.+.+||.||..+.... | +...-....++++++|||+|+...+..+... .+++.+.. -+.++.|
T Consensus 44 --~~~~~~l~iwD~pGq~~~~~~----~-~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~v 116 (232)
T PF04670_consen 44 --FLSFLPLNIWDCPGQDDFMEN----Y-FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFV 116 (232)
T ss_dssp --CTTSCEEEEEEE-SSCSTTHT----T-HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEE
T ss_pred --cCCCcEEEEEEcCCccccccc----c-ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 122257999999998765322 1 2222344578999999999998534444433 34444433 2358889
Q ss_pred EEeCCCCCChHHHHHHhhhhhhccccccCC--CCCCeeccCCCCCC
Q psy13475 253 ILNKADQVKPEELMRVQGTLIWNISPLMSS--SEPPVMYSTSLWSN 296 (468)
Q Consensus 253 VlNK~D~v~~~el~~v~~~l~~~ls~~~~~--pe~p~vy~~s~w~~ 296 (468)
.+.|+|++..+.-..++......+...... .+...+|..|-||+
T Consensus 117 fiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D~ 162 (232)
T PF04670_consen 117 FIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWDE 162 (232)
T ss_dssp EEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTST
T ss_pred EEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcCc
Confidence 999999997655444433322222222211 22577899998885
No 256
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.85 E-value=3.8e-08 Score=90.83 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=80.4
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccc-eee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGL-LDR 172 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt-~~~ 172 (468)
....|+|+|+.++|||||+.++.......+.... +.-++.. . .+|| .-.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~-~~~s~k~--------k---------------------r~tTva~D 58 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADA-SSVSGKG--------K---------------------RPTTVAMD 58 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccc-ccccccc--------c---------------------cceeEeec
Confidence 3456999999999999999999887643221110 0000000 0 0111 111
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC-CcEE
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE-YQTR 251 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~-~~ii 251 (468)
+-.+.. .....+.|+||||... |.-+..-+.+.++..++++|++. +...+...+++.+.... .|++
T Consensus 59 ~g~~~~--~~~~~v~LfgtPGq~R----------F~fm~~~l~~ga~gaivlVDss~-~~~~~a~~ii~f~~~~~~ip~v 125 (187)
T COG2229 59 FGSIEL--DEDTGVHLFGTPGQER----------FKFMWEILSRGAVGAIVLVDSSR-PITFHAEEIIDFLTSRNPIPVV 125 (187)
T ss_pred ccceEE--cCcceEEEecCCCcHH----------HHHHHHHHhCCcceEEEEEecCC-CcchHHHHHHHHHhhccCCCEE
Confidence 111121 1225799999999765 33334455788999999999988 45556677777776655 8999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
|.+||.|+.+.
T Consensus 126 Va~NK~DL~~a 136 (187)
T COG2229 126 VAINKQDLFDA 136 (187)
T ss_pred EEeeccccCCC
Confidence 99999999864
No 257
>KOG2486|consensus
Probab=98.83 E-value=1.2e-08 Score=99.60 Aligned_cols=157 Identities=17% Similarity=0.235 Sum_probs=95.5
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
.+.|.++++|++|+|||||||.++..+...-+.. +++ |.| ..
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k----~K~--------------------------------g~T--q~ 175 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSK----SKN--------------------------------GKT--QA 175 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcC----CCC--------------------------------ccc--ee
Confidence 3557899999999999999999998765321111 000 222 11
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHh-hcccC--EEEEEEcCCCCCCCHhHHHHHHHHhcCCCc
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWF-IDRAD--IIFLVYDPSKLDVGPETEAILDQLKGREYQ 249 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~-~~~aD--lIllV~Da~~~~i~~e~~~ll~~l~~~~~~ 249 (468)
+.+.. ....+.+||.||+.-..-..+---|+..+++.+ +++-. .+++++|++. ++..-+...++.+.+++.|
T Consensus 176 in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv-~i~~~D~~~i~~~ge~~VP 250 (320)
T KOG2486|consen 176 INHFH----VGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASV-PIQPTDNPEIAWLGENNVP 250 (320)
T ss_pred eeeee----ccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccC-CCCCCChHHHHHHhhcCCC
Confidence 12222 336799999999553321111112345555544 33333 4678899988 7888888899999999999
Q ss_pred EEEEEeCCCCCChHH--HHHH---hhhhhhccccccCCCCCCeeccCC
Q psy13475 250 TRIILNKADQVKPEE--LMRV---QGTLIWNISPLMSSSEPPVMYSTS 292 (468)
Q Consensus 250 iiiVlNK~D~v~~~e--l~~v---~~~l~~~ls~~~~~pe~p~vy~~s 292 (468)
+.+|+||+|....-. ..+. ....+..+....-....||+|++|
T Consensus 251 ~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ss 298 (320)
T KOG2486|consen 251 MTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSS 298 (320)
T ss_pred eEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeec
Confidence 999999999763211 1111 000011222222235678888887
No 258
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.2e-08 Score=112.74 Aligned_cols=132 Identities=19% Similarity=0.243 Sum_probs=88.0
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcccccccc-ccccceeee
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQK-FGQGLLDRL 173 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~-fg~tt~~~i 173 (468)
-..|.|+|+..+|||||...||-..-.+ .+.|..- .|++. .|+ ...++ -|-|.....
T Consensus 10 ~RNigI~aHidaGKTTltE~lL~~tG~i--~k~G~v~-----------------~g~~~-~D~--~e~EqeRGITI~saa 67 (697)
T COG0480 10 IRNIGIVAHIDAGKTTLTERILFYTGII--SKIGEVH-----------------DGAAT-MDW--MEQEQERGITITSAA 67 (697)
T ss_pred ceEEEEEeccCCChHHHHHHHHHHcCCc--CCCcccc-----------------CCCcc-CCC--cHHHHhcCCEEeeee
Confidence 3369999999999999999998543221 2222221 11111 111 11111 022222222
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
....+.. ...|+||||||+.+.. ..+...+.-+|..++|+|+.. ++..+...+++++.+.+.|.+++
T Consensus 68 ~s~~~~~--~~~iNlIDTPGHVDFt----------~EV~rslrvlDgavvVvdave-GV~~QTEtv~rqa~~~~vp~i~f 134 (697)
T COG0480 68 TTLFWKG--DYRINLIDTPGHVDFT----------IEVERSLRVLDGAVVVVDAVE-GVEPQTETVWRQADKYGVPRILF 134 (697)
T ss_pred eEEEEcC--ceEEEEeCCCCccccH----------HHHHHHHHhhcceEEEEECCC-CeeecHHHHHHHHhhcCCCeEEE
Confidence 2222221 3679999999998744 444445788999999999998 88999999999999999999999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|...
T Consensus 135 iNKmDR~~ 142 (697)
T COG0480 135 VNKMDRLG 142 (697)
T ss_pred EECccccc
Confidence 99999874
No 259
>KOG1486|consensus
Probab=98.82 E-value=1.3e-08 Score=98.02 Aligned_cols=88 Identities=25% Similarity=0.332 Sum_probs=64.0
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|-||+|||||+..+.+..-...+ |.-||+..+.+
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~----------------------------------------yeFTTLtcIpG 102 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAAS----------------------------------------YEFTTLTCIPG 102 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhc----------------------------------------eeeeEEEeecc
Confidence 36999999999999999999876432111 12456666666
Q ss_pred eecCCCCCcceEEEeCCCCchhhhh-hhhccchhHHHHHhhcccCEEEEEEcCCC
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQ-VERQFPFNDACQWFIDRADIIFLVYDPSK 229 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~~~~aDlIllV~Da~~ 229 (468)
+.-.+ +..|.++|.|||.++..+ ..|+ ..+-..+..||+|++|+||++
T Consensus 103 vi~y~--ga~IQllDLPGIieGAsqgkGRG----RQviavArtaDlilMvLDatk 151 (364)
T KOG1486|consen 103 VIHYN--GANIQLLDLPGIIEGASQGKGRG----RQVIAVARTADLILMVLDATK 151 (364)
T ss_pred eEEec--CceEEEecCcccccccccCCCCC----ceEEEEeecccEEEEEecCCc
Confidence 65333 378999999999988766 4444 223344678999999999988
No 260
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.81 E-value=1.4e-08 Score=92.64 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=65.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|..|+|||||++.+++..+... . .|+. ..+. ..+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~--~---~~~~---------------------------------~~~~---~~i 40 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL--E---SPEG---------------------------------GRFK---KEV 40 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC--C---CCCc---------------------------------cceE---EEE
Confidence 389999999999999999887766421 0 1111 1110 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~iii 252 (468)
.+.+ ....+.++||+|.... .+...+|++++|+|.+....-+....++..+.. .+.|+++
T Consensus 41 ~~~~-~~~~l~i~D~~g~~~~---------------~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piil 104 (158)
T cd04103 41 LVDG-QSHLLLIRDEGGAPDA---------------QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLIL 104 (158)
T ss_pred EECC-EEEEEEEEECCCCCch---------------hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 1111 1235889999997431 124678999999999863211222334444432 3469999
Q ss_pred EEeCCCCC
Q psy13475 253 ILNKADQV 260 (468)
Q Consensus 253 VlNK~D~v 260 (468)
|.||.|+.
T Consensus 105 vgnK~Dl~ 112 (158)
T cd04103 105 VGTQDAIS 112 (158)
T ss_pred EeeHHHhh
Confidence 99999974
No 261
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.81 E-value=7.4e-09 Score=96.24 Aligned_cols=31 Identities=29% Similarity=0.146 Sum_probs=26.6
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLR 126 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~ 126 (468)
..|+++|.||+|||||||+|+|.+.+.++..
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~~~ 148 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRACNVGAT 148 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccceecCC
Confidence 4699999999999999999999987655443
No 262
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.78 E-value=3.5e-08 Score=104.86 Aligned_cols=67 Identities=18% Similarity=0.076 Sum_probs=49.2
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCC------CHhHHHHHHHHhcCCC-cEEEEEeC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDV------GPETEAILDQLKGREY-QTRIILNK 256 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i------~~e~~~ll~~l~~~~~-~iiiVlNK 256 (468)
..++||||||+.+ |.......+..+|.+++|+|+....+ ..+..+.+..+...+. ++++++||
T Consensus 85 ~~i~liDtPGh~d----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNK 154 (447)
T PLN00043 85 YYCTVIDAPGHRD----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNK 154 (447)
T ss_pred EEEEEEECCCHHH----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEc
Confidence 5799999999765 44445556789999999999986211 1455566655555566 57889999
Q ss_pred CCCC
Q psy13475 257 ADQV 260 (468)
Q Consensus 257 ~D~v 260 (468)
+|+.
T Consensus 155 mD~~ 158 (447)
T PLN00043 155 MDAT 158 (447)
T ss_pred ccCC
Confidence 9976
No 263
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=9.7e-08 Score=98.08 Aligned_cols=135 Identities=19% Similarity=0.133 Sum_probs=78.9
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccC---------CCCCCCCceeEEEecCCCCccccCcccccCcccccccccccc
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLR---------TGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQG 168 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~---------~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~t 168 (468)
++++|+..+|||||+-.|+=.--.+ ..+ .-....+..|.+++....+.--.| -|
T Consensus 10 l~~iGHVD~GKSTl~GrLly~~G~i-d~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerG----------------vT 72 (428)
T COG5256 10 LVFIGHVDAGKSTLVGRLLYDLGEI-DKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERG----------------VT 72 (428)
T ss_pred EEEEcCCCCCchhhhhhhHHHhCCC-CHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcc----------------eE
Confidence 9999999999999999887431110 000 001234446777765443322222 22
Q ss_pred ceeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC------CCHhHHHHHHH
Q psy13475 169 LLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD------VGPETEAILDQ 242 (468)
Q Consensus 169 t~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~------i~~e~~~ll~~ 242 (468)
+-....... . ....++|+|+||+.+.. .-.-..+..||+.++|+|+.... ...+.++-+-.
T Consensus 73 i~~~~~~fe--t-~k~~~tIiDaPGHrdFv----------knmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~L 139 (428)
T COG5256 73 IDVAHSKFE--T-DKYNFTIIDAPGHRDFV----------KNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFL 139 (428)
T ss_pred EEEEEEEee--c-CCceEEEeeCCchHHHH----------HHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHH
Confidence 211111112 1 22579999999976643 33334478999999999998731 33334432222
Q ss_pred HhcC-CCcEEEEEeCCCCCCh
Q psy13475 243 LKGR-EYQTRIILNKADQVKP 262 (468)
Q Consensus 243 l~~~-~~~iiiVlNK~D~v~~ 262 (468)
.+-. -..++|++||+|.++.
T Consensus 140 a~tlGi~~lIVavNKMD~v~w 160 (428)
T COG5256 140 ARTLGIKQLIVAVNKMDLVSW 160 (428)
T ss_pred HHhcCCceEEEEEEccccccc
Confidence 2212 3589999999999953
No 264
>KOG0468|consensus
Probab=98.77 E-value=1.8e-08 Score=107.65 Aligned_cols=129 Identities=20% Similarity=0.265 Sum_probs=85.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCc--eeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPA--YFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~--~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
.|+++|+-.+|||+|+..|.++.++.. ..++.. +|+-..+-+.++. ...-+ -|-
T Consensus 130 nV~l~GhLhhGKT~l~D~Lv~~tHp~~-----~~~~e~~lrytD~l~~E~eRg---~sIK~---------~p~------- 185 (971)
T KOG0468|consen 130 NVGLVGHLHHGKTALMDLLVEQTHPDF-----SKNTEADLRYTDTLFYEQERG---CSIKS---------TPV------- 185 (971)
T ss_pred EEEEeeccccChhHHHHhhceeccccc-----cccccccccccccchhhHhcC---ceEee---------cce-------
Confidence 599999999999999999999876422 112222 3333322222221 00000 000
Q ss_pred EeecCC--CCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEE
Q psy13475 175 GLQLPH--PLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRI 252 (468)
Q Consensus 175 ~~~~~~--~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iii 252 (468)
...+.. ..-.-++|+||||+.+ |.+.+...+..+|.+++|+|+.. ++.-...++++..-.+..|+++
T Consensus 186 Tl~l~D~~~KS~l~nilDTPGHVn----------F~DE~ta~l~~sDgvVlvvDv~E-GVmlntEr~ikhaiq~~~~i~v 254 (971)
T KOG0468|consen 186 TLVLSDSKGKSYLMNILDTPGHVN----------FSDETTASLRLSDGVVLVVDVAE-GVMLNTERIIKHAIQNRLPIVV 254 (971)
T ss_pred EEEEecCcCceeeeeeecCCCccc----------chHHHHHHhhhcceEEEEEEccc-CceeeHHHHHHHHHhccCcEEE
Confidence 111111 1113489999999987 44445555889999999999998 7788888899887777899999
Q ss_pred EEeCCCCC
Q psy13475 253 ILNKADQV 260 (468)
Q Consensus 253 VlNK~D~v 260 (468)
|+||+|.+
T Consensus 255 viNKiDRL 262 (971)
T KOG0468|consen 255 VINKVDRL 262 (971)
T ss_pred EEehhHHH
Confidence 99999975
No 265
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.77 E-value=4.1e-08 Score=100.20 Aligned_cols=64 Identities=23% Similarity=0.290 Sum_probs=40.3
Q ss_pred CcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 183 LEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 183 l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
...++||||+|+...... .+..||++++|+++.. .++...+...+- +..-++|+||+|+...
T Consensus 148 g~d~viieT~Gv~qs~~~-------------i~~~aD~vlvv~~p~~---gd~iq~~k~gi~--E~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 148 GYDVILVETVGVGQSETA-------------VAGMVDFFLLLQLPGA---GDELQGIKKGIM--ELADLIVINKADGDNK 209 (332)
T ss_pred CCCEEEEECCCCccchhH-------------HHHhCCEEEEEecCCc---hHHHHHHHhhhh--hhhheEEeehhcccch
Confidence 367999999999854221 2567999999987433 233322221111 1234899999999865
Q ss_pred HH
Q psy13475 263 EE 264 (468)
Q Consensus 263 ~e 264 (468)
..
T Consensus 210 ~~ 211 (332)
T PRK09435 210 TA 211 (332)
T ss_pred hH
Confidence 43
No 266
>KOG2655|consensus
Probab=98.76 E-value=6.7e-08 Score=98.55 Aligned_cols=147 Identities=18% Similarity=0.264 Sum_probs=88.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcccccccccccc-ceeeeEE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQG-LLDRLRG 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~t-t~~~i~~ 175 (468)
.++++|+.|.|||||||.|++.++.......++.... ..| .......
T Consensus 23 tlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~--------------------------------~~t~~i~~~~~ 70 (366)
T KOG2655|consen 23 TLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERI--------------------------------KETVEIESTKV 70 (366)
T ss_pred EEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCc--------------------------------cccceeeeeee
Confidence 5999999999999999999998664211010000000 000 0011111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhh----------hhhccc--hhHH---HHHhhc--ccCEEEEEEcCCCCCCCHhHHH
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQ----------VERQFP--FNDA---CQWFID--RADIIFLVYDPSKLDVGPETEA 238 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~----------~~r~~d--~~~~---~~~~~~--~aDlIllV~Da~~~~i~~e~~~ 238 (468)
...+++.--++++|||||+.+.-+. ++..++ |.+. -+..+. +++++||++.+..-++.+-+..
T Consensus 71 ~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~ 150 (366)
T KOG2655|consen 71 EIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE 150 (366)
T ss_pred eecCCCeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHH
Confidence 2222333356999999999876321 010000 0000 011122 7789999999887678888888
Q ss_pred HHHHHhcCCCcEEEEEeCCCCCChHHHHHHhhhhhhcc
Q psy13475 239 ILDQLKGREYQTRIILNKADQVKPEELMRVQGTLIWNI 276 (468)
Q Consensus 239 ll~~l~~~~~~iiiVlNK~D~v~~~el~~v~~~l~~~l 276 (468)
+.+.+.. ..++|=|+-|+|.+..+++.......+..+
T Consensus 151 ~Mk~l~~-~vNiIPVI~KaD~lT~~El~~~K~~I~~~i 187 (366)
T KOG2655|consen 151 FMKKLSK-KVNLIPVIAKADTLTKDELNQFKKRIRQDI 187 (366)
T ss_pred HHHHHhc-cccccceeeccccCCHHHHHHHHHHHHHHH
Confidence 8888766 367888999999999988766644444333
No 267
>KOG0078|consensus
Probab=98.75 E-value=6.5e-08 Score=91.13 Aligned_cols=115 Identities=17% Similarity=0.253 Sum_probs=77.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.++||||.++-.+....+.. ... +..|-.| ++..+
T Consensus 14 kvlliGDs~vGKt~~l~rf~d~~f~~--~~~-----------------------------------sTiGIDF--k~kti 54 (207)
T KOG0078|consen 14 KLLLIGDSGVGKTCLLLRFSDDSFNT--SFI-----------------------------------STIGIDF--KIKTI 54 (207)
T ss_pred EEEEECCCCCchhHhhhhhhhccCcC--Ccc-----------------------------------ceEEEEE--EEEEE
Confidence 59999999999999999998876642 110 0001122 23334
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC---CCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR---EYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~---~~~iiiV 253 (468)
.+++ .-..+.+|||.|-.. |..++..+...|+.|++|+|.+.-..-+....+++.+.++ +.+.++|
T Consensus 55 ~l~g-~~i~lQiWDtaGQer----------f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~Lv 123 (207)
T KOG0078|consen 55 ELDG-KKIKLQIWDTAGQER----------FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILV 123 (207)
T ss_pred EeCC-eEEEEEEEEcccchh----------HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEe
Confidence 4433 224588999999643 5567888899999999999987621112233455555543 4689999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+..
T Consensus 124 GNK~D~~~ 131 (207)
T KOG0078|consen 124 GNKCDLEE 131 (207)
T ss_pred eccccccc
Confidence 99999875
No 268
>PRK13768 GTPase; Provisional
Probab=98.75 E-value=9e-09 Score=101.45 Aligned_cols=78 Identities=22% Similarity=0.194 Sum_probs=48.1
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcc--cCEEEEEEcCCCCCCCHhHHHHHHHHh-----cCCCcEEEEEeC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDR--ADIIFLVYDPSKLDVGPETEAILDQLK-----GREYQTRIILNK 256 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~--aDlIllV~Da~~~~i~~e~~~ll~~l~-----~~~~~iiiVlNK 256 (468)
..++++||||..+...... ........+.+ ++++++|+|+.. ..+..+......+. ..+.|+++|+||
T Consensus 97 ~~~~~~d~~g~~~~~~~~~----~~~~~~~~l~~~~~~~ii~liD~~~-~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK 171 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRE----SGRKLVERLSGSSKSVVVFLIDAVL-AKTPSDFVSLLLLALSVQLRLGLPQIPVLNK 171 (253)
T ss_pred CCEEEEeCCcHHHHHhhhH----HHHHHHHHHHhcCCeEEEEEechHH-hCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence 4799999999876532211 11112222333 899999999976 33333322222221 457899999999
Q ss_pred CCCCChHHHH
Q psy13475 257 ADQVKPEELM 266 (468)
Q Consensus 257 ~D~v~~~el~ 266 (468)
+|..+..+..
T Consensus 172 ~D~~~~~~~~ 181 (253)
T PRK13768 172 ADLLSEEELE 181 (253)
T ss_pred HhhcCchhHH
Confidence 9998776543
No 269
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.75 E-value=6.7e-09 Score=95.08 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=45.4
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCC-HhHHHHHHHHhcCCCcEEEEEeCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVG-PETEAILDQLKGREYQTRIILNKADQ 259 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~-~e~~~ll~~l~~~~~~iiiVlNK~D~ 259 (468)
.+.+||||||+.++....+.. +.+......-++|.+++++|+..+.-. +....+..++... -++|+||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~--~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTF--FMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHH--hhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 678999999999876544332 223334445678999999999764210 1122334555443 3679999995
No 270
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.73 E-value=2.6e-08 Score=101.22 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=30.1
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSK 229 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~ 229 (468)
.++.++||||+..+..+ .++ +.......+.+||++++|+|+..
T Consensus 69 v~i~l~D~aGlv~ga~~-~~g--lg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHE-GKG--LGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccc-hhh--HHHHHHHHHHHCCEEEEEEeCCC
Confidence 46999999999754321 122 22334456899999999999964
No 271
>KOG1547|consensus
Probab=98.71 E-value=2.1e-07 Score=89.23 Aligned_cols=132 Identities=21% Similarity=0.314 Sum_probs=81.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccc-cCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNS-LRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs-~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
-|+|||++|.|||||+|.|....+...+ +....+|+ ++|+--+...
T Consensus 48 NIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~---------------------------------pkT~eik~~t 94 (336)
T KOG1547|consen 48 NIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPI---------------------------------PKTTEIKSIT 94 (336)
T ss_pred EEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcc---------------------------------cceEEEEeee
Confidence 3999999999999999999987764311 11111122 3343222222
Q ss_pred -eecCCCCCcceEEEeCCCCchhhhh------hhhccchhHHHHHh------------h--cccCEEEEEEcCCCCCCCH
Q psy13475 176 -LQLPHPLLEKINIVEIPGILEIRKQ------VERQFPFNDACQWF------------I--DRADIIFLVYDPSKLDVGP 234 (468)
Q Consensus 176 -~~~~~~~l~~i~lIDTPGi~~~~~~------~~r~~d~~~~~~~~------------~--~~aDlIllV~Da~~~~i~~ 234 (468)
........-++++|||||+.+--.. +.+ | +++.-..+ + .++.++++.+.++.-.+.+
T Consensus 95 hvieE~gVklkltviDTPGfGDqInN~ncWePI~k-y-IneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrp 172 (336)
T KOG1547|consen 95 HVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEK-Y-INEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRP 172 (336)
T ss_pred eeeeecceEEEEEEecCCCcccccCccchhHHHHH-H-HHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCc
Confidence 1222233356999999999864210 111 1 11111111 2 2568899999987656778
Q ss_pred hHHHHHHHHhcCCCcEEEEEeCCCCCChHH
Q psy13475 235 ETEAILDQLKGREYQTRIILNKADQVKPEE 264 (468)
Q Consensus 235 e~~~ll~~l~~~~~~iiiVlNK~D~v~~~e 264 (468)
-+.++++.|.+. ..++=|+-|+|...-++
T Consensus 173 lDieflkrLt~v-vNvvPVIakaDtlTleE 201 (336)
T KOG1547|consen 173 LDIEFLKRLTEV-VNVVPVIAKADTLTLEE 201 (336)
T ss_pred ccHHHHHHHhhh-heeeeeEeecccccHHH
Confidence 788888887663 57788999999986554
No 272
>KOG1144|consensus
Probab=98.71 E-value=2.3e-08 Score=107.82 Aligned_cols=136 Identities=16% Similarity=0.225 Sum_probs=88.9
Q ss_pred ccccCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccc
Q psy13475 90 PEIFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGL 169 (468)
Q Consensus 90 ~~~~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt 169 (468)
.+-.++|+++|+|...+|||-|+..|.|.++.. +... ..|.. -|. ..+|...+......+
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqe-geag---gitqq-------------IgA---t~fp~~ni~e~tk~~ 529 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQE-GEAG---GITQQ-------------IGA---TYFPAENIREKTKEL 529 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhcccccc-cccc---ceeee-------------ccc---cccchHHHHHHHHHH
Confidence 345689999999999999999999999986642 0000 00000 000 011211111110000
Q ss_pred eeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc
Q psy13475 170 LDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ 249 (468)
Q Consensus 170 ~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ 249 (468)
.. .... .-..+.+.+|||||+-+......|+ ...||++|+|+|... ++.++..+-++.|+....|
T Consensus 530 ~~-~~K~---~~kvPg~lvIdtpghEsFtnlRsrg----------sslC~~aIlvvdImh-GlepqtiESi~lLR~rktp 594 (1064)
T KOG1144|consen 530 KK-DAKK---RLKVPGLLVIDTPGHESFTNLRSRG----------SSLCDLAILVVDIMH-GLEPQTIESINLLRMRKTP 594 (1064)
T ss_pred Hh-hhhh---hcCCCeeEEecCCCchhhhhhhhcc----------ccccceEEEEeehhc-cCCcchhHHHHHHHhcCCC
Confidence 00 0000 1123568999999977654444454 789999999999988 7889999999999999999
Q ss_pred EEEEEeCCCCC
Q psy13475 250 TRIILNKADQV 260 (468)
Q Consensus 250 iiiVlNK~D~v 260 (468)
++|.|||+|.+
T Consensus 595 FivALNKiDRL 605 (1064)
T KOG1144|consen 595 FIVALNKIDRL 605 (1064)
T ss_pred eEEeehhhhhh
Confidence 99999999974
No 273
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.69 E-value=2.6e-07 Score=93.34 Aligned_cols=64 Identities=25% Similarity=0.238 Sum_probs=43.5
Q ss_pred CcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 183 LEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 183 l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
...++||||||+..... ..+..+|.++++.++.. .++...+...+. +.|.++|+||+|+...
T Consensus 126 g~D~viidT~G~~~~e~-------------~i~~~aD~i~vv~~~~~---~~el~~~~~~l~--~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 126 GYDVIIVETVGVGQSEV-------------DIANMADTFVVVTIPGT---GDDLQGIKAGLM--EIADIYVVNKADGEGA 187 (300)
T ss_pred CCCEEEEeCCCCchhhh-------------HHHHhhceEEEEecCCc---cHHHHHHHHHHh--hhccEEEEEcccccch
Confidence 46899999999874321 12567899998876543 445444444443 4678999999999865
Q ss_pred HH
Q psy13475 263 EE 264 (468)
Q Consensus 263 ~e 264 (468)
..
T Consensus 188 ~~ 189 (300)
T TIGR00750 188 TN 189 (300)
T ss_pred hH
Confidence 43
No 274
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.69 E-value=3e-08 Score=88.75 Aligned_cols=29 Identities=31% Similarity=0.272 Sum_probs=25.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCccccccc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSL 125 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~ 125 (468)
.++++|.+|+|||||||+|++.+...++.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~ 113 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA 113 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC
Confidence 79999999999999999999987754433
No 275
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.68 E-value=3.2e-08 Score=89.87 Aligned_cols=29 Identities=34% Similarity=0.259 Sum_probs=24.9
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQ 122 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~ 122 (468)
+...++++|.+|+|||||+|+|++.....
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~ 127 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK 127 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc
Confidence 44579999999999999999999987543
No 276
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.67 E-value=2.5e-08 Score=93.58 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=23.3
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
.+.++++|.+|+|||||||+|++...
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 45799999999999999999999764
No 277
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.63 E-value=1.6e-07 Score=90.91 Aligned_cols=91 Identities=14% Similarity=0.151 Sum_probs=55.1
Q ss_pred EEEEeccCCCChhhHHHHHhCC--cccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN--EYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~--~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
+|+|+|++++|||||+|.|+|. .+.. + .+..+||..+..-.
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~-~--~~~~~~T~gi~~~~---------------------------------- 51 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDV-M--DTSQQTTKGIWMWS---------------------------------- 51 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEe-c--CCCCCCccceEEEe----------------------------------
Confidence 5999999999999999999998 5542 1 11234443322100
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhc--ccCEEEEEEcCCC
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFID--RADIIFLVYDPSK 229 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~--~aDlIllV~Da~~ 229 (468)
..........++++||||+.+.+... ..+ +....++. -+|++|+.++.+.
T Consensus 52 -~~~~~~~~~~v~~lDteG~~~~~~~~-~~~---~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 52 -VPFKLGKEHAVLLLDTEGTDGRERGE-FED---DARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred -ccccCCCcceEEEEecCCcCccccCc-hhh---hhHHHHHHHHHhCEEEEeccCcc
Confidence 00001122579999999999864321 011 22222233 4899999988764
No 278
>KOG0073|consensus
Probab=98.63 E-value=2.5e-07 Score=83.87 Aligned_cols=109 Identities=21% Similarity=0.224 Sum_probs=72.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|..||||||+++.|+|.+...+++ |+--.+...
T Consensus 18 riLiLGLdNsGKTti~~kl~~~~~~~i~p------------------------------------------t~gf~Iktl 55 (185)
T KOG0073|consen 18 RILILGLDNSGKTTIVKKLLGEDTDTISP------------------------------------------TLGFQIKTL 55 (185)
T ss_pred EEEEEecCCCCchhHHHHhcCCCccccCC------------------------------------------ccceeeEEE
Confidence 59999999999999999999987543221 222223333
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH----hcCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL----KGREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l----~~~~~~iii 252 (468)
..+ ..+++++|.-|-... .+.-..+.+.+|.++||+|++....-++....+..+ +-.+.|+++
T Consensus 56 ~~~---~~~L~iwDvGGq~~l----------r~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lv 122 (185)
T KOG0073|consen 56 EYK---GYTLNIWDVGGQKTL----------RSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLV 122 (185)
T ss_pred Eec---ceEEEEEEcCCcchh----------HHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEE
Confidence 322 267999999997653 233666789999999999986521112222222222 123469999
Q ss_pred EEeCCCCC
Q psy13475 253 ILNKADQV 260 (468)
Q Consensus 253 VlNK~D~v 260 (468)
+.||.|..
T Consensus 123 lank~dl~ 130 (185)
T KOG0073|consen 123 LANKQDLP 130 (185)
T ss_pred EEecCcCc
Confidence 99999987
No 279
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.63 E-value=1.2e-07 Score=95.16 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=25.7
Q ss_pred CEEEEeccCCCChhhHHHHHhCCccccccc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSL 125 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~ 125 (468)
..|+++|.||+|||||||+|+|.+.+.++.
T Consensus 122 ~~~~~~G~pnvGKSsliN~l~~~~~~~~~~ 151 (287)
T PRK09563 122 IRAMIIGIPNVGKSTLINRLAGKKIAKTGN 151 (287)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCccccCC
Confidence 359999999999999999999988765443
No 280
>KOG0093|consensus
Probab=98.58 E-value=7e-07 Score=79.61 Aligned_cols=124 Identities=18% Similarity=0.179 Sum_probs=77.9
Q ss_pred CccccCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcccccccccccc
Q psy13475 89 DPEIFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQG 168 (468)
Q Consensus 89 d~~~~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~t 168 (468)
+..|+-.-.++|+|..++|||||+..-++..+.+. . .+.+|-.
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~a--f-----------------------------------vsTvGid 57 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSA--F-----------------------------------VSTVGID 57 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHHhhccccccc--e-----------------------------------eeeeeee
Confidence 33444445699999999999999999999876421 0 0111222
Q ss_pred ceeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---c
Q psy13475 169 LLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---G 245 (468)
Q Consensus 169 t~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~ 245 (468)
|. +..+. .+.....+.++||.|... +...+-.+.+.|+.+|+++|.+.-..-......+.+++ -
T Consensus 58 FK--vKTvy-r~~kRiklQiwDTagqEr----------yrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw 124 (193)
T KOG0093|consen 58 FK--VKTVY-RSDKRIKLQIWDTAGQER----------YRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSW 124 (193)
T ss_pred EE--EeEee-ecccEEEEEEEecccchh----------hhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeec
Confidence 21 11222 222335689999999643 33456667899999999999876211111223333333 2
Q ss_pred CCCcEEEEEeCCCCCCh
Q psy13475 246 REYQTRIILNKADQVKP 262 (468)
Q Consensus 246 ~~~~iiiVlNK~D~v~~ 262 (468)
.+.|+|+|.||||+-++
T Consensus 125 ~naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 125 DNAQVILVGNKCDMDSE 141 (193)
T ss_pred cCceEEEEecccCCccc
Confidence 35799999999998653
No 281
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.57 E-value=7.7e-07 Score=93.56 Aligned_cols=71 Identities=23% Similarity=0.193 Sum_probs=46.9
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
.+++||||||.+......-.. +.... .....|.+++|+|+.. ..+.....+.+.....+.-+|+||.|...
T Consensus 183 ~DvViIDTaGr~~~d~~lm~E--l~~i~--~~~~p~e~lLVlda~~---Gq~a~~~a~~F~~~~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEE--MLQVA--EAIQPDNIIFVMDGSI---GQAAEAQAKAFKDSVDVGSVIITKLDGHA 253 (429)
T ss_pred CCEEEEECCCCCcchHHHHHH--HHHHh--hhcCCcEEEEEecccc---ChhHHHHHHHHHhccCCcEEEEECccCCC
Confidence 689999999987654332221 11221 1336789999999875 34445556666555567889999999763
No 282
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.56 E-value=5.6e-08 Score=89.16 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=23.5
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
+..+++++|++|||||||||+|++...
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 446899999999999999999999854
No 283
>KOG0461|consensus
Probab=98.55 E-value=7.3e-07 Score=89.46 Aligned_cols=129 Identities=18% Similarity=0.173 Sum_probs=76.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
-+.++|...+|||||-++|..-.-.. .--..|+.++..++ -|+.|+.+. .....
T Consensus 9 N~GiLGHvDSGKTtLarals~~~STa-AFDk~pqS~eRgiT-----------------LDLGFS~~~--------v~~pa 62 (522)
T KOG0461|consen 9 NLGILGHVDSGKTTLARALSELGSTA-AFDKHPQSTERGIT-----------------LDLGFSTMT--------VLSPA 62 (522)
T ss_pred eeeeEeeccCchHHHHHHHHhhccch-hhccCCccccccee-----------------Eeecceeee--------ccccc
Confidence 48999999999999999996431110 01111222222222 133333222 11222
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
.+|....-++++||+||..+- .+.+...+.-.|+.++|+|+.+ +...+..+.+-.-.....+.++|+||
T Consensus 63 rLpq~e~lq~tlvDCPGHasL----------IRtiiggaqiiDlm~lviDv~k-G~QtQtAEcLiig~~~c~klvvvink 131 (522)
T KOG0461|consen 63 RLPQGEQLQFTLVDCPGHASL----------IRTIIGGAQIIDLMILVIDVQK-GKQTQTAECLIIGELLCKKLVVVINK 131 (522)
T ss_pred ccCccccceeEEEeCCCcHHH----------HHHHHhhhheeeeeeEEEehhc-ccccccchhhhhhhhhccceEEEEec
Confidence 334444467999999998763 2334444667799999999988 55555544332222234688999999
Q ss_pred CCCCCh
Q psy13475 257 ADQVKP 262 (468)
Q Consensus 257 ~D~v~~ 262 (468)
+|...+
T Consensus 132 id~lpE 137 (522)
T KOG0461|consen 132 IDVLPE 137 (522)
T ss_pred cccccc
Confidence 998855
No 284
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.54 E-value=8.7e-08 Score=97.71 Aligned_cols=30 Identities=37% Similarity=0.367 Sum_probs=26.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLR 126 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~ 126 (468)
.|+|+|-||||||||||+|+|+..+.+|..
T Consensus 134 ~v~vvG~PNVGKSslIN~L~~k~~~~~s~~ 163 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLLGKKVAKTSNR 163 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHhcccceeeCCC
Confidence 499999999999999999999998765554
No 285
>KOG0458|consensus
Probab=98.53 E-value=6.9e-07 Score=95.00 Aligned_cols=75 Identities=23% Similarity=0.256 Sum_probs=49.7
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC------CCHhHHHHHHHHhcCC-CcEEEEEeC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD------VGPETEAILDQLKGRE-YQTRIILNK 256 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~------i~~e~~~ll~~l~~~~-~~iiiVlNK 256 (468)
..++|+|+||+.+ |+.-+-.-+..||+.++|+|++... ...+.++....++..+ ..++|++||
T Consensus 255 ~~~tliDaPGhkd----------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNK 324 (603)
T KOG0458|consen 255 KIVTLIDAPGHKD----------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINK 324 (603)
T ss_pred eeEEEecCCCccc----------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeec
Confidence 6799999999765 4444444478899999999997522 2223333333333333 478999999
Q ss_pred CCCCCh--HHHHHH
Q psy13475 257 ADQVKP--EELMRV 268 (468)
Q Consensus 257 ~D~v~~--~el~~v 268 (468)
+|+++- +.+..+
T Consensus 325 mD~V~Wsq~RF~eI 338 (603)
T KOG0458|consen 325 MDLVSWSQDRFEEI 338 (603)
T ss_pred ccccCccHHHHHHH
Confidence 999964 334444
No 286
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=2.3e-07 Score=95.72 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=61.0
Q ss_pred CcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 183 LEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 183 l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
...++|+||||+.+ |.+.+...+.-+|..++|+|+.+ ++.+....+++-++-.+.|++-.+||.|....
T Consensus 80 ~~~iNLLDTPGHeD----------FSEDTYRtLtAvDsAvMVIDaAK-GiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 80 DCLVNLLDTPGHED----------FSEDTYRTLTAVDSAVMVIDAAK-GIEPQTLKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred CeEEeccCCCCccc----------cchhHHHHHHhhheeeEEEeccc-CccHHHHHHHHHHhhcCCceEEEeeccccccC
Confidence 36799999999876 66667777889999999999999 89999999999999889999999999998743
No 287
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.51 E-value=1.6e-07 Score=93.75 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=25.1
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNS 124 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs 124 (468)
..|+++|.||+|||||||+|++.....++
T Consensus 119 ~~~~~vG~~nvGKSslin~l~~~~~~~~~ 147 (276)
T TIGR03596 119 IRAMIVGIPNVGKSTLINRLAGKKVAKVG 147 (276)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCccccC
Confidence 35999999999999999999998776543
No 288
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.51 E-value=8.8e-08 Score=99.14 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=65.6
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|||||||||+|++....... .++ .+.+++||++....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~-----~~~-----------------------------~s~~pgtT~~~~~~ 200 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKD-----VIT-----------------------------TSPFPGTTLDLIEI 200 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcc-----eee-----------------------------ecCCCCeEeeEEEE
Confidence 46999999999999999999986431000 000 01125666654432
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHh--hcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWF--IDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~--~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
.+ ..++.++||||+.... ++....+ .+..... -.....+.+.++..+ .+.-.....++.+.+....+.+.
T Consensus 201 -~~----~~~~~l~DtPG~~~~~-~~~~~l~-~~~l~~~~~~~~i~~~~~~l~~~q-~~~~ggl~~~d~~~~~~~~~~~~ 272 (360)
T TIGR03597 201 -PL----DDGHSLYDTPGIINSH-QMAHYLD-KKDLKYITPKKEIKPKTYQLNPNQ-TLFLGGLARFDYLKGEKTSFTFY 272 (360)
T ss_pred -Ee----CCCCEEEECCCCCChh-HhhhhcC-HHHHhhcCCCCccCceEEEeCCCC-EEEEceEEEEEEecCCceEEEEE
Confidence 21 2457899999998653 2111110 0111111 134456677777654 21111111122333334456777
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.++.+.+.
T Consensus 273 ~~~~~~~h 280 (360)
T TIGR03597 273 VSNELNIH 280 (360)
T ss_pred ccCCceeE
Confidence 77777653
No 289
>PRK12288 GTPase RsgA; Reviewed
Probab=98.49 E-value=1.6e-07 Score=96.67 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=23.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQ 122 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~ 122 (468)
.+++|+|++|||||||||+|+|.....
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~ 232 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEIL 232 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhcccccee
Confidence 468999999999999999999987653
No 290
>PRK12289 GTPase RsgA; Reviewed
Probab=98.48 E-value=1.7e-07 Score=96.59 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=24.0
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQ 122 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~ 122 (468)
..+++|+|++|||||||||+|++.....
T Consensus 172 ~ki~v~iG~SgVGKSSLIN~L~~~~~~~ 199 (352)
T PRK12289 172 NKITVVAGPSGVGKSSLINRLIPDVELR 199 (352)
T ss_pred cceEEEEeCCCCCHHHHHHHHcCccccc
Confidence 3468999999999999999999886643
No 291
>KOG0084|consensus
Probab=98.48 E-value=7.4e-07 Score=83.17 Aligned_cols=116 Identities=17% Similarity=0.269 Sum_probs=76.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|..|||||=|+-.+.+..+.. .. .+..|-.|..+- +
T Consensus 11 KiiliGds~VGKtCL~~Rf~~~~f~e---~~----------------------------------~sTIGVDf~~rt--~ 51 (205)
T KOG0084|consen 11 KIILIGDSGVGKTCLLLRFKDDTFTE---SY----------------------------------ISTIGVDFKIRT--V 51 (205)
T ss_pred EEEEECCCCcChhhhhhhhccCCcch---hh----------------------------------cceeeeEEEEEE--e
Confidence 59999999999999999998877642 10 000122332222 2
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC---CCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR---EYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~---~~~iiiV 253 (468)
.+.. ....+.+|||.|--. |..++..+.+.|+.||+|+|.++...-......+..+.++ +.|.++|
T Consensus 52 e~~g-k~iKlQIWDTAGQER----------Frtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLV 120 (205)
T KOG0084|consen 52 ELDG-KTIKLQIWDTAGQER----------FRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLV 120 (205)
T ss_pred eecc-eEEEEEeeeccccHH----------HhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEE
Confidence 2112 123689999999622 5577888899999999999998732112233444444432 3589999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
.||+|+.+.
T Consensus 121 GNK~Dl~~~ 129 (205)
T KOG0084|consen 121 GNKCDLTEK 129 (205)
T ss_pred eeccccHhh
Confidence 999998754
No 292
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.47 E-value=2.8e-07 Score=85.17 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=24.0
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQ 122 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~ 122 (468)
..++++|.+|+|||||+|+|++.....
T Consensus 116 ~~~~~~G~~~vGKstlin~l~~~~~~~ 142 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRGKKVAK 142 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcee
Confidence 469999999999999999999987643
No 293
>KOG0087|consensus
Probab=98.45 E-value=3e-07 Score=86.64 Aligned_cols=115 Identities=22% Similarity=0.265 Sum_probs=78.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+++|||-|+-.....++.+-+..+ .|-.|..+...+
T Consensus 16 KiVliGDS~VGKsnLlsRftrnEF~~~SksT-------------------------------------IGvef~t~t~~v 58 (222)
T KOG0087|consen 16 KIVLIGDSAVGKSNLLSRFTRNEFSLESKST-------------------------------------IGVEFATRTVNV 58 (222)
T ss_pred EEEEeCCCccchhHHHHHhcccccCcccccc-------------------------------------eeEEEEeeceee
Confidence 4999999999999999999999887543221 011221111111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC---CcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE---YQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~---~~iiiV 253 (468)
........||||.|... +..++..+...|-..++|+|.++-..-+...+++..|+++. .++++|
T Consensus 59 ---d~k~vkaqIWDTAGQER----------yrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLv 125 (222)
T KOG0087|consen 59 ---DGKTVKAQIWDTAGQER----------YRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLV 125 (222)
T ss_pred ---cCcEEEEeeecccchhh----------hccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 11124578999999643 33456666789999999999977322244567778887764 478889
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+..
T Consensus 126 GNK~DL~~ 133 (222)
T KOG0087|consen 126 GNKSDLNH 133 (222)
T ss_pred ecchhhhh
Confidence 99999864
No 294
>KOG0098|consensus
Probab=98.44 E-value=1.2e-06 Score=81.12 Aligned_cols=119 Identities=19% Similarity=0.211 Sum_probs=78.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.+.++|.+|||||.|+-......+.++...| . |-.+..+...+
T Consensus 8 KyIiiGd~gVGKSclllrf~~krF~~~hd~T---------i----------------------------Gvefg~r~~~i 50 (216)
T KOG0098|consen 8 KYIIIGDTGVGKSCLLLRFTDKRFQPVHDLT---------I----------------------------GVEFGARMVTI 50 (216)
T ss_pred EEEEECCCCccHHHHHHHHhccCccccccce---------e----------------------------eeeeceeEEEE
Confidence 4889999999999999999998775322110 0 11121121111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC---CCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR---EYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~---~~~iiiV 253 (468)
......+.++||.|.-. |.++++.+...|-.+|+|+|.++-+.-......+..++.+ +..++++
T Consensus 51 ---d~k~IKlqiwDtaGqe~----------frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLi 117 (216)
T KOG0098|consen 51 ---DGKQIKLQIWDTAGQES----------FRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLI 117 (216)
T ss_pred ---cCceEEEEEEecCCcHH----------HHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 12224689999999754 6678888899999999999997732222333445555443 3467788
Q ss_pred EeCCCCCChHHH
Q psy13475 254 LNKADQVKPEEL 265 (468)
Q Consensus 254 lNK~D~v~~~el 265 (468)
.||+|+....++
T Consensus 118 GNKsDL~~rR~V 129 (216)
T KOG0098|consen 118 GNKSDLEARREV 129 (216)
T ss_pred cchhhhhccccc
Confidence 999999765444
No 295
>KOG0394|consensus
Probab=98.44 E-value=3.7e-07 Score=84.27 Aligned_cols=115 Identities=23% Similarity=0.262 Sum_probs=72.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|.++|.+|+|||||+|.+...++..-...+ .|..|..+-..+
T Consensus 11 KViiLGDsGVGKtSLmn~yv~~kF~~qykaT-------------------------------------IgadFltKev~V 53 (210)
T KOG0394|consen 11 KVIILGDSGVGKTSLMNQYVNKKFSQQYKAT-------------------------------------IGADFLTKEVQV 53 (210)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHHHhccc-------------------------------------cchhheeeEEEE
Confidence 3999999999999999999998885311110 033343332222
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHh---H-HHHHHHHhcC---CCc
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPE---T-EAILDQLKGR---EYQ 249 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e---~-~~ll~~l~~~---~~~ 249 (468)
. ....-+.|+||.|-.. |...-..|.+.||..++++|......-+. + .+++.+.... ..|
T Consensus 54 d---~~~vtlQiWDTAGQER----------FqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FP 120 (210)
T KOG0394|consen 54 D---DRSVTLQIWDTAGQER----------FQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFP 120 (210)
T ss_pred c---CeEEEEEEEecccHHH----------hhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCccc
Confidence 2 3335688999999643 22333445789999999999865321111 1 1334333322 259
Q ss_pred EEEEEeCCCCCC
Q psy13475 250 TRIILNKADQVK 261 (468)
Q Consensus 250 iiiVlNK~D~v~ 261 (468)
++++.||+|.-+
T Consensus 121 FVilGNKiD~~~ 132 (210)
T KOG0394|consen 121 FVILGNKIDVDG 132 (210)
T ss_pred EEEEcccccCCC
Confidence 999999999865
No 296
>KOG0395|consensus
Probab=98.43 E-value=7.3e-07 Score=84.66 Aligned_cols=114 Identities=21% Similarity=0.327 Sum_probs=72.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||+|...+++..+... . .||.. .+..+. +
T Consensus 5 kvvvlG~~gVGKSal~~qf~~~~f~~~--y---~ptie---------------------------------d~y~k~--~ 44 (196)
T KOG0395|consen 5 KVVVLGAGGVGKSALTIQFLTGRFVED--Y---DPTIE---------------------------------DSYRKE--L 44 (196)
T ss_pred EEEEECCCCCCcchheeeecccccccc--c---CCCcc---------------------------------ccceEE--E
Confidence 599999999999999999998877531 1 12211 111111 1
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH---hc-CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL---KG-REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l---~~-~~~~iii 252 (468)
.+. .....+.|+||+|..+ +...-..++..+|..++|++.+....-++...+.+.+ ++ ...|+++
T Consensus 45 ~v~-~~~~~l~ilDt~g~~~----------~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~Pivl 113 (196)
T KOG0395|consen 45 TVD-GEVCMLEILDTAGQEE----------FSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIIL 113 (196)
T ss_pred EEC-CEEEEEEEEcCCCccc----------ChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEE
Confidence 111 2224577999999332 3444556688899999999987632122333444444 22 2359999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|.||+|+..
T Consensus 114 VGNK~Dl~~ 122 (196)
T KOG0395|consen 114 VGNKCDLER 122 (196)
T ss_pred EEEcccchh
Confidence 999999875
No 297
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=6e-07 Score=94.64 Aligned_cols=111 Identities=24% Similarity=0.353 Sum_probs=75.5
Q ss_pred CCCE-EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 94 SKPL-VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 94 ~~p~-V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
-.|+ |+|+|+||+||||||..|+.+-- ..|.+.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~t----------------------------------------------k~ti~~ 100 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT----------------------------------------------KQTIDE 100 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHH----------------------------------------------Hhhhhc
Confidence 3555 78999999999999999987521 111111
Q ss_pred eEE-eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCC-cE
Q psy13475 173 LRG-LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREY-QT 250 (468)
Q Consensus 173 i~~-~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~-~i 250 (468)
+.+ +.+.+..-..++|+.+|.-.. . |.++ +.-||+||+++|+.- ++.-+..++++.+..++. ++
T Consensus 101 i~GPiTvvsgK~RRiTflEcp~Dl~------~---miDv----aKIaDLVlLlIdgnf-GfEMETmEFLnil~~HGmPrv 166 (1077)
T COG5192 101 IRGPITVVSGKTRRITFLECPSDLH------Q---MIDV----AKIADLVLLLIDGNF-GFEMETMEFLNILISHGMPRV 166 (1077)
T ss_pred cCCceEEeecceeEEEEEeChHHHH------H---HHhH----HHhhheeEEEecccc-CceehHHHHHHHHhhcCCCce
Confidence 111 111122235799999993211 1 2233 466899999999976 777788899999988886 56
Q ss_pred EEEEeCCCCCChHH
Q psy13475 251 RIILNKADQVKPEE 264 (468)
Q Consensus 251 iiVlNK~D~v~~~e 264 (468)
+.|++..|+...+.
T Consensus 167 lgV~ThlDlfk~~s 180 (1077)
T COG5192 167 LGVVTHLDLFKNPS 180 (1077)
T ss_pred EEEEeecccccChH
Confidence 77999999986543
No 298
>KOG0095|consensus
Probab=98.40 E-value=3.1e-06 Score=75.64 Aligned_cols=125 Identities=19% Similarity=0.279 Sum_probs=80.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|..|+|||-|++.+...-+++ |...| . |-.|+-+. +
T Consensus 9 kivlvgnagvgktclvrrftqglfpp-----gqgat--------------------i------------gvdfmikt--v 49 (213)
T KOG0095|consen 9 KIVLVGNAGVGKTCLVRRFTQGLFPP-----GQGAT--------------------I------------GVDFMIKT--V 49 (213)
T ss_pred EEEEEccCCcCcchhhhhhhccCCCC-----CCCce--------------------e------------eeeEEEEE--E
Confidence 49999999999999999998766642 11111 0 22332222 2
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC---CCHhHHHHHHHHhcCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD---VGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~---i~~e~~~ll~~l~~~~~~iiiV 253 (468)
.+ +.....+.+|||+|... |..+++.+...|+++++|.|.+..+ --+++.+-++.......-.++|
T Consensus 50 ev-~gekiklqiwdtagqer----------frsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilv 118 (213)
T KOG0095|consen 50 EV-NGEKIKLQIWDTAGQER----------FRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILV 118 (213)
T ss_pred EE-CCeEEEEEEeeccchHH----------HHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEee
Confidence 22 22235689999999543 6678888899999999999987632 2234444444444444456789
Q ss_pred EeCCCCCChHHHHHHhhh
Q psy13475 254 LNKADQVKPEELMRVQGT 271 (468)
Q Consensus 254 lNK~D~v~~~el~~v~~~ 271 (468)
.||+|+.+..++-...+.
T Consensus 119 gnk~d~~drrevp~qige 136 (213)
T KOG0095|consen 119 GNKIDLADRREVPQQIGE 136 (213)
T ss_pred ccccchhhhhhhhHHHHH
Confidence 999998876554444333
No 299
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.39 E-value=1.1e-06 Score=85.86 Aligned_cols=90 Identities=21% Similarity=0.229 Sum_probs=46.8
Q ss_pred CcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 183 LEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 183 l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
+..++||.|-|+...+-.+ +.-||.+++|+-+...+--+-.+ -+++ ..-++|+||+|...
T Consensus 121 G~D~IiiETVGvGQsE~~I-------------~~~aD~~v~v~~Pg~GD~iQ~~KaGimE------iaDi~vVNKaD~~g 181 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSEVDI-------------ADMADTVVLVLVPGLGDEIQAIKAGIME------IADIFVVNKADRPG 181 (266)
T ss_dssp T-SEEEEEEESSSTHHHHH-------------HTTSSEEEEEEESSTCCCCCTB-TTHHH------H-SEEEEE--SHHH
T ss_pred CCCEEEEeCCCCCccHHHH-------------HHhcCeEEEEecCCCccHHHHHhhhhhh------hccEEEEeCCChHH
Confidence 4679999999998764322 56789999999886532111111 2222 24489999999554
Q ss_pred hHHHHHHhhhhhhccccccCCCCCCeeccCC
Q psy13475 262 PEELMRVQGTLIWNISPLMSSSEPPVMYSTS 292 (468)
Q Consensus 262 ~~el~~v~~~l~~~ls~~~~~pe~p~vy~~s 292 (468)
.+...+.+.. ++.+..-......|+|+..|
T Consensus 182 A~~~~~~l~~-~l~l~~~~~~~W~ppV~~ts 211 (266)
T PF03308_consen 182 ADRTVRDLRS-MLHLLREREDGWRPPVLKTS 211 (266)
T ss_dssp HHHHHHHHHH-HHHHCSTSCTSB--EEEEEB
T ss_pred HHHHHHHHHH-HHhhccccccCCCCCEEEEE
Confidence 4443333332 22333322333345666544
No 300
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.39 E-value=3.8e-07 Score=89.53 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=24.4
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCccc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYS 121 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~ 121 (468)
...+++++|++|||||||||+|++....
T Consensus 119 ~~~~~~~~G~sgvGKStLiN~L~~~~~~ 146 (245)
T TIGR00157 119 QNRISVFAGQSGVGKSSLINALDPSVKQ 146 (245)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhhhhhc
Confidence 4458999999999999999999997654
No 301
>KOG0080|consensus
Probab=98.38 E-value=9.2e-07 Score=79.97 Aligned_cols=111 Identities=23% Similarity=0.321 Sum_probs=70.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+||||||-......+-... |+|= |-.|.-+. .
T Consensus 13 KiLlIGeSGVGKSSLllrFv~~~fd~~~------~~tI-------------------------------GvDFkvk~--m 53 (209)
T KOG0080|consen 13 KILLIGESGVGKSSLLLRFVSNTFDDLH------PTTI-------------------------------GVDFKVKV--M 53 (209)
T ss_pred EEEEEccCCccHHHHHHHHHhcccCccC------Ccee-------------------------------eeeEEEEE--E
Confidence 5999999999999999999887664211 1110 22332222 2
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHH---HHHHh----cCCCc
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAI---LDQLK----GREYQ 249 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~l---l~~l~----~~~~~ 249 (468)
.+ ......+.||||+|... |...+-.+...|-.||+|+|.++. +.+..+ ++.+. +.+.-
T Consensus 54 ~v-dg~~~KlaiWDTAGqEr----------FRtLTpSyyRgaqGiIlVYDVT~R---dtf~kLd~W~~Eld~Ystn~dii 119 (209)
T KOG0080|consen 54 QV-DGKRLKLAIWDTAGQER----------FRTLTPSYYRGAQGIILVYDVTSR---DTFVKLDIWLKELDLYSTNPDII 119 (209)
T ss_pred EE-cCceEEEEEEeccchHh----------hhccCHhHhccCceeEEEEEccch---hhHHhHHHHHHHHHhhcCCccHh
Confidence 22 12235699999999643 444466678899999999999873 333332 22222 22234
Q ss_pred EEEEEeCCCCC
Q psy13475 250 TRIILNKADQV 260 (468)
Q Consensus 250 iiiVlNK~D~v 260 (468)
.++|.||+|.-
T Consensus 120 kmlVgNKiDke 130 (209)
T KOG0080|consen 120 KMLVGNKIDKE 130 (209)
T ss_pred Hhhhcccccch
Confidence 46799999965
No 302
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.36 E-value=1.6e-06 Score=99.81 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=52.0
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
..++||||||.... ..........+|++++|+|++. ++..+..+.+..+...+.|+++|+||+|+.
T Consensus 526 p~i~fiDTPGhe~F----------~~lr~~g~~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 526 PGLLFIDTPGHEAF----------TSLRKRGGSLADLAVLVVDINE-GFKPQTIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred CcEEEEECCCcHHH----------HHHHHhhcccCCEEEEEEECcc-cCCHhHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 46999999996542 2222334677999999999987 677777778888877788999999999986
No 303
>PRK13796 GTPase YqeH; Provisional
Probab=98.36 E-value=4.9e-07 Score=93.78 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.9
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
...++++|.+|||||||||+|++..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhc
Confidence 3469999999999999999999753
No 304
>KOG0090|consensus
Probab=98.33 E-value=1.6e-06 Score=81.99 Aligned_cols=113 Identities=20% Similarity=0.271 Sum_probs=68.7
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
++.|+++|..++|||+|+-.|....+..+ .|-...-.
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~T-------------------------------------------vtSiepn~ 74 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGT-------------------------------------------VTSIEPNE 74 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCe-------------------------------------------eeeeccce
Confidence 45799999999999999988876543210 00011111
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHH----HHHHH-----hc
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEA----ILDQL-----KG 245 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~----ll~~l-----~~ 245 (468)
+....+. ..+++||-||....+.++.+.+.. -..+-.|+||+|+... ..+.+. +...+ ..
T Consensus 75 a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~-------~~~akaiVFVVDSa~f--~k~vrdvaefLydil~~~~~~~ 143 (238)
T KOG0090|consen 75 ATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKH-------NYSAKAIVFVVDSATF--LKNVRDVAEFLYDILLDSRVKK 143 (238)
T ss_pred eeEeecC--cceEEEeCCCcHHHHHHHHHHccc-------cccceeEEEEEecccc--chhhHHHHHHHHHHHHhhcccc
Confidence 1121122 348999999998765543333100 0278899999998753 332222 22222 24
Q ss_pred CCCcEEEEEeCCCCCC
Q psy13475 246 REYQTRIILNKADQVK 261 (468)
Q Consensus 246 ~~~~iiiVlNK~D~v~ 261 (468)
+..|+.++.||-|+..
T Consensus 144 ~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 144 NKPPVLIACNKQDLFT 159 (238)
T ss_pred CCCCEEEEecchhhhh
Confidence 5679999999999873
No 305
>KOG0075|consensus
Probab=98.30 E-value=1.1e-06 Score=78.40 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=70.2
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
+.++|-.++|||||+|.+...++... . +.|.--++..+.
T Consensus 23 l~lvGLq~sGKtt~Vn~ia~g~~~ed---m--------------------------------------iptvGfnmrk~t 61 (186)
T KOG0075|consen 23 LSLVGLQNSGKTTLVNVIARGQYLED---M--------------------------------------IPTVGFNMRKVT 61 (186)
T ss_pred EEEEeeccCCcceEEEEEeeccchhh---h--------------------------------------cccccceeEEec
Confidence 88999999999999999876555321 0 011111122222
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCC----HhHHHHHHHHhcCCCcEEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVG----PETEAILDQLKGREYQTRII 253 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~----~e~~~ll~~l~~~~~~iiiV 253 (468)
..-..+.++|.||... |..+-..|...+++|++++||...+-- .|...++..-.-.+.|+.++
T Consensus 62 ---kgnvtiklwD~gGq~r----------frsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVL 128 (186)
T KOG0075|consen 62 ---KGNVTIKLWDLGGQPR----------FRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVL 128 (186)
T ss_pred ---cCceEEEEEecCCCcc----------HHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEe
Confidence 1114588999999654 334455668999999999999764321 22233332222245799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||.|..+
T Consensus 129 GnK~d~~~ 136 (186)
T KOG0075|consen 129 GNKIDLPG 136 (186)
T ss_pred cccccCcc
Confidence 99999864
No 306
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.28 E-value=8.1e-07 Score=88.71 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=23.4
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
+..+.+++|++|||||||||+|++...
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~~ 189 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPELN 189 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchhh
Confidence 455899999999999999999998543
No 307
>KOG1707|consensus
Probab=98.27 E-value=3.1e-06 Score=90.07 Aligned_cols=110 Identities=26% Similarity=0.341 Sum_probs=72.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|..|+||||||-+|++.++...-++. +..+
T Consensus 11 RIvliGD~G~GKtSLImSL~~eef~~~VP~r---------------------------------------------l~~i 45 (625)
T KOG1707|consen 11 RIVLIGDEGVGKTSLIMSLLEEEFVDAVPRR---------------------------------------------LPRI 45 (625)
T ss_pred EEEEECCCCccHHHHHHHHHhhhcccccccc---------------------------------------------CCcc
Confidence 4999999999999999999999886422221 0001
Q ss_pred ecC---CCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCC----CCCHhHHHHHHHHhc--CC
Q psy13475 177 QLP---HPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKL----DVGPETEAILDQLKG--RE 247 (468)
Q Consensus 177 ~~~---~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~----~i~~e~~~ll~~l~~--~~ 247 (468)
.+| .|.....++|||+.-.+... ....-+++||+|+++.+.+.. .++.-+.-+++++.+ +.
T Consensus 46 ~IPadvtPe~vpt~ivD~ss~~~~~~----------~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~ 115 (625)
T KOG1707|consen 46 LIPADVTPENVPTSIVDTSSDSDDRL----------CLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHE 115 (625)
T ss_pred ccCCccCcCcCceEEEecccccchhH----------HHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCcc
Confidence 111 12224589999984333211 234447899999999976541 144445556666542 56
Q ss_pred CcEEEEEeCCCCCC
Q psy13475 248 YQTRIILNKADQVK 261 (468)
Q Consensus 248 ~~iiiVlNK~D~v~ 261 (468)
.|+|+|.||+|..+
T Consensus 116 ~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 116 TPVILVGNKSDNGD 129 (625)
T ss_pred CCEEEEeeccCCcc
Confidence 79999999999874
No 308
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.24 E-value=3e-06 Score=87.41 Aligned_cols=106 Identities=15% Similarity=0.021 Sum_probs=60.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.+.|+|.||+|||||+|+|.+.....++.. ..||...+. |...+.|.-+..|+.+-+.
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~~~~a~y---pftTi~p~~-----------g~v~v~d~r~d~L~~~~~~-------- 61 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLGNEAANP---PFTTIEPNA-----------GVVNPSDPRLDLLAIYIKP-------- 61 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCccccCCC---CCCCCCCce-----------eEEEechhHHHHHHHHhCC--------
Confidence 389999999999999999999875221111 122222211 1111122112222221110
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSK 229 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~ 229 (468)
.......+.++|.||+..+... .++ +.......++++|++++|+++..
T Consensus 62 --~~~~~a~i~~~DiaGlv~gAs~-g~G--lgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 62 --EKVPPTTTEFVDIAGLVGGASK-GEG--LGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred --cCcCCceEEEEeccccccchhc-ccC--cchHHHHHHHhCCEEEEEEeCCC
Confidence 0111246899999999875432 122 22344556889999999999854
No 309
>KOG3883|consensus
Probab=98.22 E-value=9.5e-06 Score=72.96 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=74.0
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+...|+++|.-++|||++|..|+-.+..+. +--.||...+.+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~---~e~~pTiEDiY~----------------------------------- 49 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPG---TELHPTIEDIYV----------------------------------- 49 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCC---Cccccchhhhee-----------------------------------
Confidence 344599999999999999999874443211 111232222111
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHH-HHHhc----CCC
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAIL-DQLKG----REY 248 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll-~~l~~----~~~ 248 (468)
..+..+.....++.|.||.|+..+..++ -+.+++-+|..++|+++.... +-+..+++ +.+.+ .+.
T Consensus 50 ~svet~rgarE~l~lyDTaGlq~~~~eL---------prhy~q~aDafVLVYs~~d~e-Sf~rv~llKk~Idk~KdKKEv 119 (198)
T KOG3883|consen 50 ASVETDRGAREQLRLYDTAGLQGGQQEL---------PRHYFQFADAFVLVYSPMDPE-SFQRVELLKKEIDKHKDKKEV 119 (198)
T ss_pred EeeecCCChhheEEEeecccccCchhhh---------hHhHhccCceEEEEecCCCHH-HHHHHHHHHHHHhhccccccc
Confidence 1122223334679999999998763333 344578899999999987631 11112233 22322 235
Q ss_pred cEEEEEeCCCCCChH
Q psy13475 249 QTRIILNKADQVKPE 263 (468)
Q Consensus 249 ~iiiVlNK~D~v~~~ 263 (468)
|++++.||.|+..+.
T Consensus 120 piVVLaN~rdr~~p~ 134 (198)
T KOG3883|consen 120 PIVVLANKRDRAEPR 134 (198)
T ss_pred cEEEEechhhcccch
Confidence 999999999987543
No 310
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.22 E-value=4.8e-05 Score=78.94 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.8
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.+...++++|++|+||||++..|.+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35568999999999999999999875
No 311
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.22 E-value=7.9e-06 Score=82.59 Aligned_cols=67 Identities=25% Similarity=0.290 Sum_probs=48.8
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHH--HHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEA--ILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~--ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..+++.||||+..-... .-.-+..||+.++++||.+ ++-++.++ .+..|-+. ..+++.+||+|+++
T Consensus 86 RkFIiADTPGHeQYTRN----------MaTGASTadlAIlLVDAR~-Gvl~QTrRHs~I~sLLGI-rhvvvAVNKmDLvd 153 (431)
T COG2895 86 RKFIIADTPGHEQYTRN----------MATGASTADLAILLVDARK-GVLEQTRRHSFIASLLGI-RHVVVAVNKMDLVD 153 (431)
T ss_pred ceEEEecCCcHHHHhhh----------hhcccccccEEEEEEecch-hhHHHhHHHHHHHHHhCC-cEEEEEEeeecccc
Confidence 67999999997653222 2223788999999999987 66666653 44555443 47888999999997
Q ss_pred h
Q psy13475 262 P 262 (468)
Q Consensus 262 ~ 262 (468)
-
T Consensus 154 y 154 (431)
T COG2895 154 Y 154 (431)
T ss_pred c
Confidence 4
No 312
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.21 E-value=1.5e-05 Score=79.53 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=42.8
Q ss_pred cceEEEeCCCCchhhhh-hhhccchhHHHH-HhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQ-VERQFPFNDACQ-WFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~-~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||....... +++.-.+.+.+. .....+|.+++|+|+.. ..+.........+.-...-+|+||+|...
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~---~~~~~~~~~~f~~~~~~~g~IlTKlDe~~ 231 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT---GQNALEQAKVFNEAVGLTGIILTKLDGTA 231 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---CHHHHHHHHHHHhhCCCCEEEEEccCCCC
Confidence 57999999998864333 211100111111 11234899999999964 33333323333322246788999999764
No 313
>KOG1424|consensus
Probab=98.20 E-value=1.4e-06 Score=91.51 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=45.1
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
-+|.+||-|||||||+||+|+|++...||... |.| ..|+.
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TP--------------------------------------GkT--KHFQT 354 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTP--------------------------------------GKT--KHFQT 354 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCC--------------------------------------CCc--ceeEE
Confidence 36999999999999999999999987666541 333 35666
Q ss_pred eecCCCCCcceEEEeCCCCchh
Q psy13475 176 LQLPHPLLEKINIVEIPGILEI 197 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~ 197 (468)
+.+. ..+.|.|+||+.-+
T Consensus 355 i~ls----~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 355 IFLS----PSVCLCDCPGLVFP 372 (562)
T ss_pred EEcC----CCceecCCCCcccc
Confidence 6654 45899999998754
No 314
>KOG1532|consensus
Probab=98.19 E-value=3.9e-06 Score=82.21 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=45.7
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhc-ccCEEEEEEcCCCCCCCHh-H----HHHHHHHhcCCCcEEEEEeCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFID-RADIIFLVYDPSKLDVGPE-T----EAILDQLKGREYQTRIILNKA 257 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~-~aDlIllV~Da~~~~i~~e-~----~~ll~~l~~~~~~iiiVlNK~ 257 (468)
.+..+|||||..+.-..-..++ -++..++. -.-+|++|+|..+ ..++. + ......|-+...|+++|+||+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGs---IIte~lass~ptvv~YvvDt~r-s~~p~tFMSNMlYAcSilyktklp~ivvfNK~ 191 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGS---IITETLASSFPTVVVYVVDTPR-STSPTTFMSNMLYACSILYKTKLPFIVVFNKT 191 (366)
T ss_pred cCEEEEcCCCceEEEEecCCcc---chHhhHhhcCCeEEEEEecCCc-CCCchhHHHHHHHHHHHHHhccCCeEEEEecc
Confidence 4689999999876422211121 12223333 2346788999866 22222 2 223344556778999999999
Q ss_pred CCCChH
Q psy13475 258 DQVKPE 263 (468)
Q Consensus 258 D~v~~~ 263 (468)
|..+.+
T Consensus 192 Dv~d~~ 197 (366)
T KOG1532|consen 192 DVSDSE 197 (366)
T ss_pred cccccH
Confidence 998754
No 315
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.18 E-value=3.1e-06 Score=76.59 Aligned_cols=27 Identities=37% Similarity=0.236 Sum_probs=23.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQ 122 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~ 122 (468)
..++++|.+|+|||||+|+|.+.....
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~~~~~~ 128 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKGRHSAS 128 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccc
Confidence 458999999999999999999876543
No 316
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.17 E-value=5.3e-05 Score=80.20 Aligned_cols=72 Identities=13% Similarity=0.217 Sum_probs=42.2
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||........-.. +..... .....+-+++|++++.- .....+++..+...+ .--+|+||+|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~--L~~ll~-~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEE--LKALIE-FSGEPIDVYLVLSATTK--YEDLKDIYKHFSRLP-LDGLIFTKLDETS 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHH--HHHHHh-ccCCCCeEEEEEECCCC--HHHHHHHHHHhCCCC-CCEEEEecccccc
Confidence 579999999986532221111 111111 11133567888988651 345556667666443 3478999999763
No 317
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=3.3e-06 Score=86.34 Aligned_cols=105 Identities=16% Similarity=0.109 Sum_probs=59.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccc-cceeeeEE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQ-GLLDRLRG 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~-tt~~~i~~ 175 (468)
.+.|||.||||||||.|+|......+ +.-|.| .|... -|.+.+.|.+...|....+ .-
T Consensus 4 ~~GIVGlPNVGKSTlFnAlT~~~a~~-----aNYPF~----TIePN------~Giv~v~d~rl~~L~~~~~c~~------ 62 (372)
T COG0012 4 KIGIVGLPNVGKSTLFNALTKAGAEI-----ANYPFC----TIEPN------VGVVYVPDCRLDELAEIVKCPP------ 62 (372)
T ss_pred eeEEecCCCCcHHHHHHHHHcCCccc-----cCCCcc----cccCC------eeEEecCchHHHHHHHhcCCCC------
Confidence 58999999999999999999877431 111211 11100 0122223333333322111 00
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCC
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSK 229 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~ 229 (468)
.-....+.|||.+|+..+..+ .++ +-..-..-++++|+|+.|+|+..
T Consensus 63 ----k~~~~~ve~vDIAGLV~GAs~-GeG--LGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 63 ----KIRPAPVEFVDIAGLVKGASK-GEG--LGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ----cEEeeeeEEEEecccCCCccc-CCC--cchHHHHhhhhcCeEEEEEEecC
Confidence 011145999999999876433 233 22223344789999999999864
No 318
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.17 E-value=3.7e-06 Score=79.83 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=40.2
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
.+++||||||........-.. +.+.... + ..+-+++|++++. ..+....+......-..--+|+||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~e--l~~~~~~-~-~~~~~~LVlsa~~---~~~~~~~~~~~~~~~~~~~lIlTKlDet~ 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEE--LKKLLEA-L-NPDEVHLVLSATM---GQEDLEQALAFYEAFGIDGLILTKLDETA 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHH--HHHHHHH-H-SSSEEEEEEEGGG---GGHHHHHHHHHHHHSSTCEEEEESTTSSS
T ss_pred CCEEEEecCCcchhhHHHHHH--HHHHhhh-c-CCccceEEEeccc---ChHHHHHHHHHhhcccCceEEEEeecCCC
Confidence 469999999987543331111 1111111 2 6788999999976 33333333333222234567899999864
No 319
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.16 E-value=6e-06 Score=71.97 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=69.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.+++||+.|.|||||.|+|.|.+... .+ | +.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kK-----------------------------------------T-----QAv 34 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KK-----------------------------------------T-----QAV 34 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh--cc-----------------------------------------c-----cee
Confidence 48999999999999999999987642 11 1 112
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCC--CCCHhHHHHHHHHhcCCCcEEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKL--DVGPETEAILDQLKGREYQTRIIL 254 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~--~i~~e~~~ll~~l~~~~~~iiiVl 254 (468)
...+ =-.|||||-.-.. .+. -........++|++++|-.+... .+++.+..+ ...|+|-|+
T Consensus 35 e~~d-----~~~IDTPGEy~~~---~~~---Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~------~~k~vIgvV 97 (148)
T COG4917 35 EFND-----KGDIDTPGEYFEH---PRW---YHALITTLQDADVIIYVHAANDPESRFPPGFLDI------GVKKVIGVV 97 (148)
T ss_pred eccC-----ccccCCchhhhhh---hHH---HHHHHHHhhccceeeeeecccCccccCCcccccc------cccceEEEE
Confidence 2211 1258999954221 122 13344457899999999887652 123332222 235799999
Q ss_pred eCCCCCChHHHHHHh
Q psy13475 255 NKADQVKPEELMRVQ 269 (468)
Q Consensus 255 NK~D~v~~~el~~v~ 269 (468)
+|+|+...+++.++.
T Consensus 98 TK~DLaed~dI~~~~ 112 (148)
T COG4917 98 TKADLAEDADISLVK 112 (148)
T ss_pred ecccccchHhHHHHH
Confidence 999999777766553
No 320
>PRK00098 GTPase RsgA; Reviewed
Probab=98.16 E-value=3e-06 Score=85.53 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.0
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCccc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYS 121 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~ 121 (468)
..-+++++|++|+|||||||+|+|....
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~ 190 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLEL 190 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3447999999999999999999997654
No 321
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.14 E-value=7.9e-06 Score=83.25 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=42.5
Q ss_pred cceEEEeCCCCchhhhh-hhhccchhHHHHHh-hcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQ-VERQFPFNDACQWF-IDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~-~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||....... +++.-.+.+++... ....+-+++|+|++. + .....+. ....+.-...-+|+||.|...
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~-g-~~~~~~a-~~f~~~~~~~giIlTKlD~t~ 273 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT-G-QNALSQA-KAFHEAVGLTGIILTKLDGTA 273 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC-C-hHHHHHH-HHHHhhCCCCEEEEECCCCCC
Confidence 57999999998764433 22110022222211 235678999999985 2 2222232 222222346688999999653
No 322
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.14 E-value=2e-05 Score=78.35 Aligned_cols=93 Identities=23% Similarity=0.242 Sum_probs=51.6
Q ss_pred CCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 182 LLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 182 ~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
.+..++||.|-|+..++-.+ ...+|.+++|.-+.- .++..-+=.-+- +.--++|+||+|.-.
T Consensus 142 aG~DvIIVETVGvGQsev~I-------------~~~aDt~~~v~~pg~---GD~~Q~iK~Gim--EiaDi~vINKaD~~~ 203 (323)
T COG1703 142 AGYDVIIVETVGVGQSEVDI-------------ANMADTFLVVMIPGA---GDDLQGIKAGIM--EIADIIVINKADRKG 203 (323)
T ss_pred cCCCEEEEEecCCCcchhHH-------------hhhcceEEEEecCCC---CcHHHHHHhhhh--hhhheeeEeccChhh
Confidence 34689999999998764322 456899999887644 443322211111 234589999999655
Q ss_pred hHHHHHHhhhhhhccc-cccCCCCCCeeccCC
Q psy13475 262 PEELMRVQGTLIWNIS-PLMSSSEPPVMYSTS 292 (468)
Q Consensus 262 ~~el~~v~~~l~~~ls-~~~~~pe~p~vy~~s 292 (468)
.+.-.+.+....-.+. .-...++.|+||..+
T Consensus 204 A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~ 235 (323)
T COG1703 204 AEKAARELRSALDLLREVWRENGWRPPVVTTS 235 (323)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCCceeEee
Confidence 4433332222111111 122335667777655
No 323
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.14 E-value=2.2e-07 Score=90.80 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=35.7
Q ss_pred ceEEEeCCCCchhhhhhhhccchhHHHHHhh-cccCEEEEEEcCCCCCCCHhH-HHHH---HHHhcCCCcEEEEEeCCCC
Q psy13475 185 KINIVEIPGILEIRKQVERQFPFNDACQWFI-DRADIIFLVYDPSKLDVGPET-EAIL---DQLKGREYQTRIILNKADQ 259 (468)
Q Consensus 185 ~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~-~~aDlIllV~Da~~~~i~~e~-~~ll---~~l~~~~~~iiiVlNK~D~ 259 (468)
.+.++||||..+--.-... +...++.+. ...=++++++|+....-...+ ..++ ..+-+.+.|.+.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~---~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDS---GRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHH---HHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechh---HHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCc
Confidence 6999999998765322111 112222222 223467889999763211111 1112 1223457899999999999
Q ss_pred CCh
Q psy13475 260 VKP 262 (468)
Q Consensus 260 v~~ 262 (468)
++.
T Consensus 169 ~~~ 171 (238)
T PF03029_consen 169 LSK 171 (238)
T ss_dssp S-H
T ss_pred ccc
Confidence 973
No 324
>KOG0079|consensus
Probab=98.14 E-value=1.3e-05 Score=71.73 Aligned_cols=114 Identities=18% Similarity=0.280 Sum_probs=75.4
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
.+|+|.+++|||||+-......++. ..+ ||- |-.+ ++..+.
T Consensus 11 llIigDsgVGKssLl~rF~ddtFs~--sYi----tTi-------------------------------GvDf--kirTv~ 51 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADDTFSG--SYI----TTI-------------------------------GVDF--KIRTVD 51 (198)
T ss_pred HHeecCCcccHHHHHHHHhhccccc--ceE----EEe-------------------------------eeeE--EEEEee
Confidence 6789999999999998887765542 111 000 1111 233333
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC--CcEEEEEe
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE--YQTRIILN 255 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~--~~iiiVlN 255 (468)
++ .....+.|+||+|-.. |..++..+.+..+.+++|+|.+....-....+.++.++.+. .|-++|.|
T Consensus 52 i~-G~~VkLqIwDtAGqEr----------Frtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGN 120 (198)
T KOG0079|consen 52 IN-GDRVKLQIWDTAGQER----------FRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGN 120 (198)
T ss_pred cC-CcEEEEEEeecccHHH----------HHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceeccc
Confidence 33 2235689999999533 55667777889999999999987322233456666666543 47789999
Q ss_pred CCCCCC
Q psy13475 256 KADQVK 261 (468)
Q Consensus 256 K~D~v~ 261 (468)
|.|..+
T Consensus 121 K~d~~~ 126 (198)
T KOG0079|consen 121 KNDDPE 126 (198)
T ss_pred CCCCcc
Confidence 999764
No 325
>KOG1487|consensus
Probab=98.13 E-value=2.3e-06 Score=83.11 Aligned_cols=88 Identities=26% Similarity=0.269 Sum_probs=60.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|.++|-||+||||+++-|.|..-+ |... -.|+..++.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~-vasy---------------------------------------efttl~~vpG 99 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSE-VAAY---------------------------------------EFTTLTTVPG 99 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCc-cccc---------------------------------------cceeEEEecc
Confidence 35999999999999999999986322 1111 2455556666
Q ss_pred eecCCCCCcceEEEeCCCCchhhhh-hhhccchhHHHHHhhcccCEEEEEEcCCC
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQ-VERQFPFNDACQWFIDRADIIFLVYDPSK 229 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~~~~aDlIllV~Da~~ 229 (468)
.... ....+.+.|.||+.++.+. ..|+ +..-..++.|++|++|+|.-+
T Consensus 100 ~~~y--~gaKiqlldlpgiiegakdgkgrg----~qviavartcnli~~vld~~k 148 (358)
T KOG1487|consen 100 VIRY--KGAKIQLLDLPGIIEGAKDGKGRG----KQVIAVARTCNLIFIVLDVLK 148 (358)
T ss_pred eEec--cccceeeecCcchhcccccCCCCc----cEEEEEeecccEEEEEeeccC
Confidence 5522 2367999999999987655 3444 223334678899999999754
No 326
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=1.7e-05 Score=78.42 Aligned_cols=89 Identities=19% Similarity=0.151 Sum_probs=57.6
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCC-cEEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREY-QTRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~-~iiiVlNK~D~v~~ 262 (468)
..+..||+||+.+--+. .-.-+.+.|..|+|+.|.. +.-++.++-+-..+..+. .+++.+||+|+++.
T Consensus 75 rhyahVDcPGHaDYvKN----------MItgAaqmDgAILVVsA~d-GpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd 143 (394)
T COG0050 75 RHYAHVDCPGHADYVKN----------MITGAAQMDGAILVVAATD-GPMPQTREHILLARQVGVPYIVVFLNKVDMVDD 143 (394)
T ss_pred ceEEeccCCChHHHHHH----------HhhhHHhcCccEEEEEcCC-CCCCcchhhhhhhhhcCCcEEEEEEecccccCc
Confidence 57899999998774332 2222556788899999887 444555543333344455 56778999999987
Q ss_pred HHHHHHhhhhhhccccccCCC
Q psy13475 263 EELMRVQGTLIWNISPLMSSS 283 (468)
Q Consensus 263 ~el~~v~~~l~~~ls~~~~~p 283 (468)
+++.+...-.+..|-...+.|
T Consensus 144 ~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 144 EELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 776655444444444445554
No 327
>KOG0446|consensus
Probab=98.10 E-value=1.8e-06 Score=95.48 Aligned_cols=169 Identities=18% Similarity=0.263 Sum_probs=102.3
Q ss_pred ccccCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCcc--ccCcccccC--c---ccccc
Q psy13475 90 PEIFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTI--LDGTQLAAD--W---TFSGL 162 (468)
Q Consensus 90 ~~~~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~--i~G~~l~~D--~---~f~~L 162 (468)
.+....|.|+++|..|+||||.++.|+|+++. +.|....|.+..++..-....- -.+.....+ . +|...
T Consensus 24 ~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~fl----pRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~v 99 (657)
T KOG0446|consen 24 SSFIPLPQIVVVGGQSSGKSSVLESLVGFVFL----PRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEV 99 (657)
T ss_pred CCcccCCceEEecCCCCcchhHHHHhhccccc----cccccceecccceeecccccCCcccchhccccccccccCCHHHH
Confidence 34457889999999999999999999999995 4788888888877654221110 011111011 1 22111
Q ss_pred ccc-----------cccceeeeEEeecCCCCCcceEEEeCCCCchhh--hh-hhhccchhHHHHHhhcccCEEEEEEcCC
Q psy13475 163 QKF-----------GQGLLDRLRGLQLPHPLLEKINIVEIPGILEIR--KQ-VERQFPFNDACQWFIDRADIIFLVYDPS 228 (468)
Q Consensus 163 ~~f-----------g~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~--~~-~~r~~d~~~~~~~~~~~aDlIllV~Da~ 228 (468)
.+- +...-..-.......+...++++||+||+.... ++ -+-..+...+...++.....+++.+.+.
T Consensus 100 rkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~a 179 (657)
T KOG0446|consen 100 RKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPA 179 (657)
T ss_pred HHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccch
Confidence 000 000000001112224445789999999997542 11 1122235667888899999998888765
Q ss_pred CCCC-CHhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 229 KLDV-GPETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 229 ~~~i-~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
..++ +.+...+.......+..++.|++|.|+.+.
T Consensus 180 n~d~ats~alkiarevDp~g~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 180 NSDIATSPALVVAREVDPGGSRTLEVITKFDFMDK 214 (657)
T ss_pred hhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhc
Confidence 4342 334456666666667789999999998754
No 328
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.10 E-value=1.9e-05 Score=82.06 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=44.5
Q ss_pred cceEEEeCCCCchhhhh-hhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQ-VERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||....... +.+ +.+... ....|.+++|+|++.- ......+++.+... ..--+|+||.|...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~E---L~~~lk--~~~PdevlLVLsATtk--~~d~~~i~~~F~~~-~idglI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEE---MIETMG--QVEPDYICLTLSASMK--SKDMIEIITNFKDI-HIDGIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHH---HHHHHh--hcCCCeEEEEECCccC--hHHHHHHHHHhcCC-CCCEEEEEcccCCC
Confidence 57999999998754322 222 111121 1245788999998642 34456677777653 45678999999764
No 329
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=0.00019 Score=77.21 Aligned_cols=69 Identities=12% Similarity=0.181 Sum_probs=40.7
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
..++||||||........... + ....... ....++|+++.. . ..+..++++.+... .+.-+|+||+|..
T Consensus 429 ~DLVLIDTaG~s~~D~~l~ee--L-~~L~aa~--~~a~lLVLpAts-s-~~Dl~eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQ--L-NWLRAAR--QVTSLLVLPANA-H-FSDLDEVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred CCEEEecCCCcchhhHHHHHH--H-HHHHHhh--cCCcEEEEECCC-C-hhHHHHHHHHHHhh-CCeEEEEecCcCc
Confidence 579999999987543222111 1 1111111 234677788764 2 33455666666543 5678999999975
No 330
>KOG0086|consensus
Probab=98.09 E-value=1.6e-05 Score=71.40 Aligned_cols=114 Identities=21% Similarity=0.278 Sum_probs=76.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.++++|+.|+|||-|+..++..++-..+.++ .|-.|..++..+
T Consensus 11 Kfl~iG~aGtGKSCLLh~Fie~kfkDdssHT-------------------------------------iGveFgSrIinV 53 (214)
T KOG0086|consen 11 KFLVIGSAGTGKSCLLHQFIENKFKDDSSHT-------------------------------------IGVEFGSRIVNV 53 (214)
T ss_pred eeEEeccCCCChhHHHHHHHHhhhcccccce-------------------------------------eeeeecceeeee
Confidence 4889999999999999999988775322221 023333343322
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc------CCCcE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG------REYQT 250 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~------~~~~i 250 (468)
- .....+.|+||+|... |..+++.+...|-..++|+|.+. .+.+..+-++|.+ ...-+
T Consensus 54 G---gK~vKLQIWDTAGQEr----------FRSVtRsYYRGAAGAlLVYD~Ts---rdsfnaLtnWL~DaR~lAs~nIvv 117 (214)
T KOG0086|consen 54 G---GKTVKLQIWDTAGQER----------FRSVTRSYYRGAAGALLVYDITS---RDSFNALTNWLTDARTLASPNIVV 117 (214)
T ss_pred c---CcEEEEEEeecccHHH----------HHHHHHHHhccccceEEEEeccc---hhhHHHHHHHHHHHHhhCCCcEEE
Confidence 2 1224688999999543 67888999999999999999987 3444444444432 22345
Q ss_pred EEEEeCCCCCChH
Q psy13475 251 RIILNKADQVKPE 263 (468)
Q Consensus 251 iiVlNK~D~v~~~ 263 (468)
+++.||.|+-...
T Consensus 118 iL~GnKkDL~~~R 130 (214)
T KOG0086|consen 118 ILCGNKKDLDPER 130 (214)
T ss_pred EEeCChhhcChhh
Confidence 6678999986443
No 331
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.09 E-value=5.4e-06 Score=83.27 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=24.6
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCccc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYS 121 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~ 121 (468)
...+++++|++|+|||||||+|+|....
T Consensus 160 ~~k~~~~~G~sg~GKSTlin~l~~~~~~ 187 (287)
T cd01854 160 KGKTSVLVGQSGVGKSTLINALLPDLDL 187 (287)
T ss_pred ccceEEEECCCCCCHHHHHHHHhchhhc
Confidence 3458999999999999999999998664
No 332
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=6.9e-05 Score=77.92 Aligned_cols=131 Identities=19% Similarity=0.180 Sum_probs=84.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+-.|..-.|||||+.++.|..-.. .+ + +.+ -++|.+ +.-.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~--l~---E-------------------------------ekK-RG~TiD-lg~~ 43 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDR--LP---E-------------------------------EKK-RGITID-LGFY 43 (447)
T ss_pred eEEEeeeeeccchhhhhhhccccccc--ch---h-------------------------------hhh-cCceEe-eeeE
Confidence 47788999999999999999864321 00 0 000 112211 1112
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCC-cEEEEEe
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREY-QTRIILN 255 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~-~iiiVlN 255 (468)
..+.+ ...+.|||+||+-+ +....-..+..+|..++|+|++. ++..++.+.+..+.-.+. ..++|+|
T Consensus 44 y~~~~-d~~~~fIDvpgh~~----------~i~~miag~~~~d~alLvV~~de-Gl~~qtgEhL~iLdllgi~~giivlt 111 (447)
T COG3276 44 YRKLE-DGVMGFIDVPGHPD----------FISNLLAGLGGIDYALLVVAADE-GLMAQTGEHLLILDLLGIKNGIIVLT 111 (447)
T ss_pred eccCC-CCceEEeeCCCcHH----------HHHHHHhhhcCCceEEEEEeCcc-CcchhhHHHHHHHHhcCCCceEEEEe
Confidence 22222 23799999999865 33334444778999999999977 677777776666655454 5599999
Q ss_pred CCCCCChHHHHHHhhhhhhccc
Q psy13475 256 KADQVKPEELMRVQGTLIWNIS 277 (468)
Q Consensus 256 K~D~v~~~el~~v~~~l~~~ls 277 (468)
|+|.++.+.+..........++
T Consensus 112 k~D~~d~~r~e~~i~~Il~~l~ 133 (447)
T COG3276 112 KADRVDEARIEQKIKQILADLS 133 (447)
T ss_pred ccccccHHHHHHHHHHHHhhcc
Confidence 9999988766555444444444
No 333
>KOG0467|consensus
Probab=98.08 E-value=1.2e-05 Score=87.70 Aligned_cols=126 Identities=20% Similarity=0.213 Sum_probs=80.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.++++.....|||||...|+..+--+ +++- .-+-+| +.+-+++ ..-|.++- -.++
T Consensus 11 n~~~vahvdhgktsladsl~asngvi-s~rl---agkirf--ld~rede-q~rgitmk------------------ss~i 65 (887)
T KOG0467|consen 11 NICLVAHVDHGKTSLADSLVASNGVI-SSRL---AGKIRF--LDTREDE-QTRGITMK------------------SSAI 65 (887)
T ss_pred EEEEEEEecCCccchHHHHHhhccEe-chhh---ccceee--ccccchh-hhhceeee------------------cccc
Confidence 48999999999999999998765433 2220 000011 1111111 00111111 1111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeC
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNK 256 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK 256 (468)
.. -.....++|||+||+.+. ...+..+..-+|..++++|+.. ++..+...++.+.-..+.+.++|+||
T Consensus 66 s~-~~~~~~~nlidspghvdf----------~sevssas~l~d~alvlvdvve-gv~~qt~~vlrq~~~~~~~~~lvink 133 (887)
T KOG0467|consen 66 SL-LHKDYLINLIDSPGHVDF----------SSEVSSASRLSDGALVLVDVVE-GVCSQTYAVLRQAWIEGLKPILVINK 133 (887)
T ss_pred cc-ccCceEEEEecCCCccch----------hhhhhhhhhhcCCcEEEEeecc-ccchhHHHHHHHHHHccCceEEEEeh
Confidence 11 112256999999999874 4444555778899999999998 88889988998766566788999999
Q ss_pred CCC
Q psy13475 257 ADQ 259 (468)
Q Consensus 257 ~D~ 259 (468)
+|.
T Consensus 134 idr 136 (887)
T KOG0467|consen 134 IDR 136 (887)
T ss_pred hhh
Confidence 994
No 334
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.07 E-value=3.2e-05 Score=78.90 Aligned_cols=148 Identities=24% Similarity=0.223 Sum_probs=79.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccC-ccccc-Cccccccccccccceeee
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDG-TQLAA-DWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G-~~l~~-D~~f~~L~~fg~tt~~~i 173 (468)
|+.+|.|-=|||||||||.|+.+.. +. ++.+|++-=.+-.++| ..+.. |-..-.+ .+. .+
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~---g~---------kiAVIVNEfGEvgID~~~~l~~~~e~~~El---~nG---CI 63 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRD---GK---------KIAVIVNEFGEVGIDGGALLSDTGEEVVEL---TNG---CI 63 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccC---CC---------cEEEEEecCccccccCCCccccCCccEEEe---CCc---eE
Confidence 6788999999999999999997644 12 2344444322333342 21111 1111010 111 11
Q ss_pred EEee-----------cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHh-H-HHHH
Q psy13475 174 RGLQ-----------LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPE-T-EAIL 240 (468)
Q Consensus 174 ~~~~-----------~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e-~-~~ll 240 (468)
.|.. .........++|.|-|+..+...++.. +......-.-..|.++-|+|+..+.-.-. . ..+.
T Consensus 64 CCT~r~dl~~~~~~L~~~~~~~D~ivIEtTGlA~P~pv~~t~--~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~ 141 (323)
T COG0523 64 CCTVRDDLLPALERLLRRRDRPDRLVIETTGLADPAPVIQTF--LTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAE 141 (323)
T ss_pred EEeccchhHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHh--ccccccccceeeceEEEEEeHHHhhhhHHHHHHHHH
Confidence 1110 001122568999999999986554332 10001111235588999999987521111 1 2233
Q ss_pred HHHhcCCCcEEEEEeCCCCCChHHHH
Q psy13475 241 DQLKGREYQTRIILNKADQVKPEELM 266 (468)
Q Consensus 241 ~~l~~~~~~iiiVlNK~D~v~~~el~ 266 (468)
+++.- -=++|+||+|+++++++.
T Consensus 142 ~Qia~---AD~ivlNK~Dlv~~~~l~ 164 (323)
T COG0523 142 DQLAF---ADVIVLNKTDLVDAEELE 164 (323)
T ss_pred HHHHh---CcEEEEecccCCCHHHHH
Confidence 44432 348899999999877643
No 335
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=7.2e-06 Score=85.56 Aligned_cols=67 Identities=25% Similarity=0.357 Sum_probs=49.8
Q ss_pred CcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHH-HHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 183 LEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEA-ILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 183 l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~-ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
...+.||||||+.+..-+++|. +.-|...|+|+||++ ++..+... +.-++ +++..++-|+||+|+..
T Consensus 75 ~Y~lnlIDTPGHVDFsYEVSRS----------LAACEGalLvVDAsQ-GveAQTlAN~YlAl-e~~LeIiPViNKIDLP~ 142 (603)
T COG0481 75 TYVLNLIDTPGHVDFSYEVSRS----------LAACEGALLVVDASQ-GVEAQTLANVYLAL-ENNLEIIPVLNKIDLPA 142 (603)
T ss_pred EEEEEEcCCCCccceEEEehhh----------HhhCCCcEEEEECcc-chHHHHHHHHHHHH-HcCcEEEEeeecccCCC
Confidence 3569999999999876555555 667888899999998 66655432 22333 45678899999999974
No 336
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.04 E-value=9e-07 Score=82.50 Aligned_cols=73 Identities=25% Similarity=0.225 Sum_probs=42.5
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
...+||.|.|...+..-. +........-..+.++.|+|+..+.-..... .+..++.. --++|+||+|+++.
T Consensus 85 ~d~IiIE~sG~a~p~~l~-----~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLI-----LQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF---ADVIVLNKIDLVSD 156 (178)
T ss_dssp -SEEEEEEECSSGGGGHH-----HHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----SEEEEE-GGGHHH
T ss_pred cCEEEECCccccccchhh-----hccccccccccccceeEEeccccccccccchhhhhhcchh---cCEEEEeccccCCh
Confidence 578999999988764431 1111222234568999999997642111121 23345543 33789999999977
Q ss_pred HH
Q psy13475 263 EE 264 (468)
Q Consensus 263 ~e 264 (468)
++
T Consensus 157 ~~ 158 (178)
T PF02492_consen 157 EQ 158 (178)
T ss_dssp H-
T ss_pred hh
Confidence 63
No 337
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=0.00015 Score=81.09 Aligned_cols=70 Identities=13% Similarity=0.263 Sum_probs=43.6
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHh--hcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC--CcEEEEEeCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWF--IDRADIIFLVYDPSKLDVGPETEAILDQLKGRE--YQTRIILNKADQ 259 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~--~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~--~~iiiVlNK~D~ 259 (468)
..++||||||.......+.+. .... ....+-+++|+|++.- .+.+.++++..+... ...-+|+||.|.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~ee------l~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDE 335 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQ------IAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDE 335 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHH------HHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCC
Confidence 479999999976543322221 1111 2345678999999752 344556766665421 355789999997
Q ss_pred CC
Q psy13475 260 VK 261 (468)
Q Consensus 260 v~ 261 (468)
..
T Consensus 336 t~ 337 (767)
T PRK14723 336 AT 337 (767)
T ss_pred CC
Confidence 64
No 338
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=1.3e-05 Score=80.06 Aligned_cols=80 Identities=21% Similarity=0.163 Sum_probs=53.4
Q ss_pred CCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC-CcEEEEEeCCCC
Q psy13475 181 PLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE-YQTRIILNKADQ 259 (468)
Q Consensus 181 ~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~-~~iiiVlNK~D~ 259 (468)
.....+.|||.||+.--.. ....-+.--|..++|+.|+..-..++..+-+..|.-.+ +.+++|-||+|+
T Consensus 83 ~l~R~VSfVDaPGHe~LMA----------TMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDl 152 (415)
T COG5257 83 ELVRRVSFVDAPGHETLMA----------TMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDL 152 (415)
T ss_pred cEEEEEEEeeCCchHHHHH----------HHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccce
Confidence 3456799999999754211 11122344588999999987545566665555554333 578999999999
Q ss_pred CChHHHHHHhh
Q psy13475 260 VKPEELMRVQG 270 (468)
Q Consensus 260 v~~~el~~v~~ 270 (468)
++.++..+.|.
T Consensus 153 V~~E~AlE~y~ 163 (415)
T COG5257 153 VSRERALENYE 163 (415)
T ss_pred ecHHHHHHHHH
Confidence 99877655543
No 339
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.01 E-value=0.0001 Score=77.64 Aligned_cols=69 Identities=10% Similarity=0.235 Sum_probs=42.6
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHh--hcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWF--IDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~--~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..+++|||+|.........+ ....+ .....-+++|+|++.- .....+++...... ..--+|+||.|...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~------~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~-~~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAE------QIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGH-GIHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHH------HHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCC-CCCEEEEEeeeCCC
Confidence 57899999998764332211 12222 1234567899998752 34455666665543 35578999999764
No 340
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.98 E-value=5.4e-05 Score=68.61 Aligned_cols=58 Identities=24% Similarity=0.199 Sum_probs=37.6
Q ss_pred CcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCC
Q psy13475 183 LEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKAD 258 (468)
Q Consensus 183 l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D 258 (468)
...++||||||+... ...++..||.+++|..++. .+ ...+++. .....--++|+||+|
T Consensus 91 ~~D~iiIDtaG~~~~-------------~~~~~~~Ad~~ivv~tpe~---~D-~y~~~k~-~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS-------------EVDIASMADTTVVVMAPGA---GD-DIQAIKA-GIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh-------------hhhHHHhCCEEEEEECCCc---hh-HHHHhhh-hHhhhcCEEEEeCCC
Confidence 367999999997643 2236889999999998863 22 2222221 111233478999998
No 341
>KOG2485|consensus
Probab=97.98 E-value=7.6e-06 Score=81.56 Aligned_cols=24 Identities=38% Similarity=0.346 Sum_probs=20.7
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.+.|.|+|-||+|||||||++...
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~ 166 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNV 166 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHH
Confidence 346999999999999999998643
No 342
>KOG0091|consensus
Probab=97.96 E-value=3.1e-05 Score=70.44 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=75.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.+.++|.+-+|||+|+.+....+++..+.++ - |-.|-.++..+
T Consensus 10 rlivigdstvgkssll~~ft~gkfaelsdpt-----v--------------------------------gvdffarlie~ 52 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKFAELSDPT-----V--------------------------------GVDFFARLIEL 52 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCcccccCCCc-----c--------------------------------chHHHHHHHhc
Confidence 4778999999999999999999887654331 0 22333333322
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHH----Hh-cCCCcEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQ----LK-GREYQTR 251 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~----l~-~~~~~ii 251 (468)
. ......+.++||+|... |..+++.+..++-.+++|+|.+....-+.....++. +. ....-+.
T Consensus 53 ~--pg~riklqlwdtagqer----------frsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFl 120 (213)
T KOG0091|consen 53 R--PGYRIKLQLWDTAGQER----------FRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFL 120 (213)
T ss_pred C--CCcEEEEEEeeccchHH----------HHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEE
Confidence 2 23234688999999543 667788889999999999998762111112222222 11 1111235
Q ss_pred EEEeCCCCCChH
Q psy13475 252 IILNKADQVKPE 263 (468)
Q Consensus 252 iVlNK~D~v~~~ 263 (468)
+|..|+|+.+..
T Consensus 121 LVGhKsDL~SqR 132 (213)
T KOG0091|consen 121 LVGHKSDLQSQR 132 (213)
T ss_pred Eeccccchhhhc
Confidence 588999987543
No 343
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.95 E-value=1.9e-05 Score=81.31 Aligned_cols=82 Identities=23% Similarity=0.177 Sum_probs=47.9
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCC----------------------CHhHH-HHH
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDV----------------------GPETE-AIL 240 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i----------------------~~e~~-~ll 240 (468)
...++|.|.|+.++..-.... ........-+.|.|+.|+|+..+.. ..... .+.
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~---~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAF---QWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFE 169 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHh---cCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHH
Confidence 568999999999875432211 0000000125688999999975310 00001 123
Q ss_pred HHHhcCCCcEEEEEeCCCCCChHHHHHHhhh
Q psy13475 241 DQLKGREYQTRIILNKADQVKPEELMRVQGT 271 (468)
Q Consensus 241 ~~l~~~~~~iiiVlNK~D~v~~~el~~v~~~ 271 (468)
.++.. --++|+||+|+++.+++.++...
T Consensus 170 ~Qi~~---AD~IvlnK~Dl~~~~~l~~~~~~ 197 (341)
T TIGR02475 170 DQLAC---ADLVILNKADLLDAAGLARVRAE 197 (341)
T ss_pred HHHHh---CCEEEEeccccCCHHHHHHHHHH
Confidence 44433 34789999999998887666443
No 344
>PRK14974 cell division protein FtsY; Provisional
Probab=97.94 E-value=3.9e-05 Score=78.63 Aligned_cols=71 Identities=13% Similarity=0.244 Sum_probs=42.2
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||........-.. +.... . ....|.+++|+|+.. ..+..+.+......-..--+|+||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~e--L~~i~-~-~~~pd~~iLVl~a~~---g~d~~~~a~~f~~~~~~~giIlTKlD~~~ 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDE--LKKIV-R-VTKPDLVIFVGDALA---GNDAVEQAREFNEAVGIDGVILTKVDADA 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHH--HHHHH-H-hhCCceEEEeecccc---chhHHHHHHHHHhcCCCCEEEEeeecCCC
Confidence 469999999988543221111 11111 1 235789999999965 33333334444333345678999999864
No 345
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.90 E-value=3.2e-05 Score=80.17 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=74.7
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCccc-ccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYS-QNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~-~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
+++.|++|||+||||||.+-.|..+-.- .-..++ .--|||.|-+- ...+|..|+.-.--.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kV-aiITtDtYRIG------------------A~EQLk~Ya~im~vp 262 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKV-AIITTDTYRIG------------------AVEQLKTYADIMGVP 262 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcce-EEEEeccchhh------------------HHHHHHHHHHHhCCc
Confidence 4788999999999999999988765331 001111 11233333220 011222222111111
Q ss_pred eEEeecCC--------CCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhc--ccCEEEEEEcCCCCCCCHhHHHHHHH
Q psy13475 173 LRGLQLPH--------PLLEKINIVEIPGILEIRKQVERQFPFNDACQWFID--RADIIFLVYDPSKLDVGPETEAILDQ 242 (468)
Q Consensus 173 i~~~~~~~--------~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~--~aDlIllV~Da~~~~i~~e~~~ll~~ 242 (468)
+..+..+. -....++||||.|-..-....- +....++. ...-+.+|++++.- .....++++.
T Consensus 263 ~~vv~~~~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i------~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~ 334 (407)
T COG1419 263 LEVVYSPKELAEAIEALRDCDVILVDTAGRSQYDKEKI------EELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQ 334 (407)
T ss_pred eEEecCHHHHHHHHHHhhcCCEEEEeCCCCCccCHHHH------HHHHHHHhccccceEEEEEecCcc--hHHHHHHHHH
Confidence 11111100 0124799999999875433311 11222222 34556778888652 5667788888
Q ss_pred HhcCCCcEEEEEeCCCCCC
Q psy13475 243 LKGREYQTRIILNKADQVK 261 (468)
Q Consensus 243 l~~~~~~iiiVlNK~D~v~ 261 (468)
....+.. -+++||.|...
T Consensus 335 f~~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 335 FSLFPID-GLIFTKLDETT 352 (407)
T ss_pred hccCCcc-eeEEEcccccC
Confidence 7765433 46799999763
No 346
>KOG1491|consensus
Probab=97.90 E-value=1.9e-05 Score=79.44 Aligned_cols=108 Identities=18% Similarity=0.165 Sum_probs=64.4
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
....+.|||.||+|||||+|+|...... ++.-| |+.|...+ +.+.+.|..|+.|.+.-+.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-----~~NfP----F~TIdPn~------a~V~v~d~Rfd~l~~~Y~~----- 78 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-----AANFP----FCTIDPNE------ARVEVPDSRFDLLCPIYGP----- 78 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-----ccCCC----cceecccc------ceeecCchHHHHHHHhcCC-----
Confidence 4457999999999999999999987653 22222 22222111 1233445556555543111
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCC
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSK 229 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~ 229 (468)
.+..-..++++|.+|+..+..+ .++ +-..-..-++.+|.|+.|+++..
T Consensus 79 -----~~~vpa~l~v~DIAGLvkGAs~-G~G--LGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 79 -----KSKVPAFLTVYDIAGLVKGASA-GEG--LGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred -----cceeeeeEEEEeecccccCccc-CcC--chHHHHHhhhhccceeEEEEecC
Confidence 0111146999999999866433 122 11223344678999999998753
No 347
>KOG0074|consensus
Probab=97.89 E-value=4.2e-05 Score=68.00 Aligned_cols=113 Identities=20% Similarity=0.281 Sum_probs=73.0
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
-.++++|--|+|||||+..|.+++..-+. || +.|-. ..
T Consensus 18 irilllGldnAGKTT~LKqL~sED~~hlt------pT----------------------------------~GFn~--k~ 55 (185)
T KOG0074|consen 18 IRILLLGLDNAGKTTFLKQLKSEDPRHLT------PT----------------------------------NGFNT--KK 55 (185)
T ss_pred EEEEEEecCCCcchhHHHHHccCChhhcc------cc----------------------------------CCcce--EE
Confidence 35999999999999999999999874222 21 22211 11
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC----CCHhHHHHHHHHhcCCCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD----VGPETEAILDQLKGREYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~----i~~e~~~ll~~l~~~~~~ii 251 (468)
+. ......++++|.-|-... | .....+.++.|.+|+|+|+..-. ++.+..++++.-+-...|++
T Consensus 56 v~--~~g~f~LnvwDiGGqr~I-----R-----pyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvl 123 (185)
T KOG0074|consen 56 VE--YDGTFHLNVWDIGGQRGI-----R-----PYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVL 123 (185)
T ss_pred Ee--ecCcEEEEEEecCCcccc-----c-----hhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhcccee
Confidence 11 122256899999886543 2 22455678999999999975421 22223344444444557999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+--||-|++..
T Consensus 124 IfankQdllta 134 (185)
T KOG0074|consen 124 IFANKQDLLTA 134 (185)
T ss_pred ehhhhhHHHhh
Confidence 99999998743
No 348
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.87 E-value=1.2e-05 Score=81.86 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=42.4
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCC-HhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVG-PETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~-~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
...++|.|.|+.++..-.+.. +......-.-+.|.|+.|+|+..+.-. +.......++.. --++|+||+|+++.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~--~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD~IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTF--FSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---ADRILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHH--hcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CCEEEEeccccCCH
Confidence 467999999998875433221 000000111245889999999753211 111122344433 33789999999875
Q ss_pred H
Q psy13475 263 E 263 (468)
Q Consensus 263 ~ 263 (468)
.
T Consensus 166 ~ 166 (318)
T PRK11537 166 A 166 (318)
T ss_pred H
Confidence 3
No 349
>KOG0077|consensus
Probab=97.86 E-value=0.00011 Score=67.20 Aligned_cols=113 Identities=22% Similarity=0.258 Sum_probs=69.5
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+.+.++++|--|+|||||++.|-...... ....--||+....+ |
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q--hvPTlHPTSE~l~I---------------------------g------- 62 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ--HVPTLHPTSEELSI---------------------------G------- 62 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccc--cCCCcCCChHHhee---------------------------c-------
Confidence 45579999999999999999996654431 11001122221111 1
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCc
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQ 249 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~ 249 (468)
.-.++-+|.-|..... ...+.++..+|.|++++|+.....-.+.+.-++.+- -...|
T Consensus 63 ---------~m~ftt~DLGGH~qAr----------r~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp 123 (193)
T KOG0077|consen 63 ---------GMTFTTFDLGGHLQAR----------RVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVP 123 (193)
T ss_pred ---------CceEEEEccccHHHHH----------HHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCc
Confidence 1346778888876542 234556889999999999976332223332222221 13469
Q ss_pred EEEEEeCCCCCC
Q psy13475 250 TRIILNKADQVK 261 (468)
Q Consensus 250 iiiVlNK~D~v~ 261 (468)
+++..||+|...
T Consensus 124 ~lilgnKId~p~ 135 (193)
T KOG0077|consen 124 FLILGNKIDIPY 135 (193)
T ss_pred ceeecccccCCC
Confidence 999999999864
No 350
>KOG2423|consensus
Probab=97.84 E-value=1.2e-05 Score=82.22 Aligned_cols=30 Identities=37% Similarity=0.286 Sum_probs=26.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLR 126 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~ 126 (468)
.|.+||.||+||||+||.|...+++-|.+.
T Consensus 309 SVGfiGYPNvGKSSiINTLR~KkVCkvAPI 338 (572)
T KOG2423|consen 309 SVGFIGYPNVGKSSIINTLRKKKVCKVAPI 338 (572)
T ss_pred eeeeecCCCCchHHHHHHHhhcccccccCC
Confidence 499999999999999999999999876655
No 351
>KOG0081|consensus
Probab=97.83 E-value=1.3e-05 Score=72.51 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=46.8
Q ss_pred ceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH---HHHHHHhcC----CCcEEEEEeCC
Q psy13475 185 KINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE---AILDQLKGR----EYQTRIILNKA 257 (468)
Q Consensus 185 ~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~---~ll~~l~~~----~~~iiiVlNK~ 257 (468)
.+.+|||+|... |...+-.|..+|=..+++||-+. ...+. .++.+|+-+ +.-++++.||+
T Consensus 68 hLQlWDTAGQER----------FRSLTTAFfRDAMGFlLiFDlT~---eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~ 134 (219)
T KOG0081|consen 68 HLQLWDTAGQER----------FRSLTTAFFRDAMGFLLIFDLTS---EQSFLNVRNWLSQLQTHAYCENPDIVLCGNKA 134 (219)
T ss_pred EEeeeccccHHH----------HHHHHHHHHHhhccceEEEeccc---hHHHHHHHHHHHHHHHhhccCCCCEEEEcCcc
Confidence 478999999543 55667778888888999999875 23343 445555533 24688899999
Q ss_pred CCCChH
Q psy13475 258 DQVKPE 263 (468)
Q Consensus 258 D~v~~~ 263 (468)
|+.+..
T Consensus 135 DL~~~R 140 (219)
T KOG0081|consen 135 DLEDQR 140 (219)
T ss_pred chhhhh
Confidence 987543
No 352
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.83 E-value=0.00063 Score=72.88 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=40.0
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhh--cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFI--DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~--~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..+++|||+|.......+.+. ..... ....-.++|+|+..- .....++++..... ...-+|+||.|...
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~------~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~~-~~~g~IlTKlDet~ 405 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQ------IAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYRGP-GLAGCILTKLDEAA 405 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHH------HHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhccC-CCCEEEEeCCCCcc
Confidence 468999999977543222111 11111 112337889998752 34445556555543 35577899999763
No 353
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00018 Score=74.54 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=39.2
Q ss_pred cceEEEeCCCCchhhhh-hhhccchhHHHHHhh--cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQ-VERQFPFNDACQWFI--DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~~--~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
..++||||||....... +.+ ...+. ...|.+++|+++..- ..+...+++.... -..--+|+||.|..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~E-------L~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~~-l~i~glI~TKLDET 355 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSE-------ISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLAE-IPIDGFIITKMDET 355 (407)
T ss_pred CCEEEEECCCCCccCHHHHHH-------HHHHhhccCCceEEEECCCccc--HHHHHHHHHhcCc-CCCCEEEEEcccCC
Confidence 57999999998653222 111 11122 245777888887431 2233344444332 23557899999976
Q ss_pred C
Q psy13475 261 K 261 (468)
Q Consensus 261 ~ 261 (468)
.
T Consensus 356 ~ 356 (407)
T PRK12726 356 T 356 (407)
T ss_pred C
Confidence 3
No 354
>KOG4252|consensus
Probab=97.81 E-value=1.1e-05 Score=74.30 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=74.0
Q ss_pred CccccCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcccccccccccc
Q psy13475 89 DPEIFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQG 168 (468)
Q Consensus 89 d~~~~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~t 168 (468)
+.+..+.-.++|+|.-++||||+|...+..-+...-..+ .|-.
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykkt-------------------------------------Igvd 56 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKT-------------------------------------IGVD 56 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhccccccccccc-------------------------------------cchh
Confidence 334444556999999999999999998854332100000 0222
Q ss_pred ceeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHH---HHHhc
Q psy13475 169 LLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAIL---DQLKG 245 (468)
Q Consensus 169 t~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll---~~l~~ 245 (468)
|+.+-..+. .....+.+|||.|..+ |..++..+...|.+.++||..+.. ..+..++ +.+..
T Consensus 57 flerqi~v~---~Edvr~mlWdtagqeE----------fDaItkAyyrgaqa~vLVFSTTDr---~SFea~~~w~~kv~~ 120 (246)
T KOG4252|consen 57 FLERQIKVL---IEDVRSMLWDTAGQEE----------FDAITKAYYRGAQASVLVFSTTDR---YSFEATLEWYNKVQK 120 (246)
T ss_pred hhhHHHHhh---HHHHHHHHHHhccchh----------HHHHHHHHhccccceEEEEecccH---HHHHHHHHHHHHHHH
Confidence 222111111 1113467899999654 556677778899999999987652 2233222 22221
Q ss_pred --CCCcEEEEEeCCCCCChHH
Q psy13475 246 --REYQTRIILNKADQVKPEE 264 (468)
Q Consensus 246 --~~~~iiiVlNK~D~v~~~e 264 (468)
...|.++|-||+|+++..+
T Consensus 121 e~~~IPtV~vqNKIDlveds~ 141 (246)
T KOG4252|consen 121 ETERIPTVFVQNKIDLVEDSQ 141 (246)
T ss_pred HhccCCeEEeeccchhhHhhh
Confidence 3479999999999986544
No 355
>KOG3886|consensus
Probab=97.78 E-value=4.4e-05 Score=73.25 Aligned_cols=103 Identities=15% Similarity=0.228 Sum_probs=62.0
Q ss_pred eEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH---HHHHHHHhcCC--CcEEEEEeCCCCC
Q psy13475 186 INIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET---EAILDQLKGRE--YQTRIILNKADQV 260 (468)
Q Consensus 186 i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~---~~ll~~l~~~~--~~iiiVlNK~D~v 260 (468)
+.++|.-|....-.. . +...-......++++++|||++.-++...+ ...++.+..+. .++.+.+.|.|++
T Consensus 55 LnlwDcGgqe~fmen---~--~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 55 LNLWDCGGQEEFMEN---Y--LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLV 129 (295)
T ss_pred eehhccCCcHHHHHH---H--HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhc
Confidence 677999887543211 1 111223346889999999999874444333 34556665543 4789999999998
Q ss_pred ChHHHHHHhh---hhhhccccccCCCCCCeeccCCCCCCC
Q psy13475 261 KPEELMRVQG---TLIWNISPLMSSSEPPVMYSTSLWSNP 297 (468)
Q Consensus 261 ~~~el~~v~~---~l~~~ls~~~~~pe~p~vy~~s~w~~p 297 (468)
..+....+.. +....++. |-....|+.|.||+.
T Consensus 130 ~~d~r~~if~~r~~~l~~~s~----~~~~~~f~TsiwDet 165 (295)
T KOG3886|consen 130 QEDARELIFQRRKEDLRRLSR----PLECKCFPTSIWDET 165 (295)
T ss_pred ccchHHHHHHHHHHHHHHhcc----cccccccccchhhHH
Confidence 6543322222 22222333 444777888988864
No 356
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00022 Score=74.51 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=40.8
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHh--hcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWF--IDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~--~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||....... .+.+...+. .....-+++|+|++. + .....++++..... ..--+++||.|...
T Consensus 255 ~DlVLIDTaGr~~~~~~-----~l~el~~~l~~~~~~~e~~LVlsat~-~-~~~~~~~~~~~~~~-~~~~~I~TKlDet~ 326 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFM-----KLAEMKELLNACGRDAEFHLAVSSTT-K-TSDVKEIFHQFSPF-SYKTVIFTKLDETT 326 (388)
T ss_pred CCEEEEcCCCCCccCHH-----HHHHHHHHHHhcCCCCeEEEEEcCCC-C-HHHHHHHHHHhcCC-CCCEEEEEeccCCC
Confidence 57999999998753211 011222221 111225889999976 2 33444555555432 35678999999764
No 357
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.77 E-value=0.00034 Score=64.38 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=40.1
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHh--hcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWF--IDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~--~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++++||||........- .....+ ....|.+++|+|+.. ..+..+....+.....-..+|+||+|...
T Consensus 83 ~d~viiDt~g~~~~~~~~l------~~l~~l~~~~~~~~~~lVv~~~~---~~~~~~~~~~~~~~~~~~~viltk~D~~~ 153 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLM------EELKKIKRVVKPDEVLLVVDAMT---GQDAVNQAKAFNEALGITGVILTKLDGDA 153 (173)
T ss_pred CCEEEEECcccchhhHHHH------HHHHHHHhhcCCCeEEEEEECCC---ChHHHHHHHHHHhhCCCCEEEEECCcCCC
Confidence 5689999999874322111 111111 234899999999854 22333333333222224678999999764
No 358
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=6.1e-05 Score=79.01 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=41.6
Q ss_pred cceEEEeCCCCchhhh-hhhhccchhHHHHHhhc-ccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRK-QVERQFPFNDACQWFID-RADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~-~~~r~~d~~~~~~~~~~-~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||...... ++.+ +.+.....-. ...-+++|+|++.- .+....+++..... ..--+|+||.|...
T Consensus 300 ~D~VLIDTaGr~~rd~~~l~e---L~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~~-~~~glIlTKLDEt~ 373 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQLER---MQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYESL-NYRRILLTKLDEAD 373 (432)
T ss_pred CCEEEEeCCCCCccCHHHHHH---HHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcCC-CCCEEEEEcccCCC
Confidence 5799999999864322 2222 1111211111 23467889998762 33455555555332 45678999999763
No 359
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.72 E-value=0.00019 Score=76.20 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=42.4
Q ss_pred cceEEEeCCCCchhhhh-hhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQ-VERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||....... +++. ... ..+..+|.+++|+|++. ..+.....+.+...-...-+|+||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El----~~l-~~~~~pdevlLVvda~~---gq~av~~a~~F~~~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEM----KEI-KEAVKPDEVLLVIDATI---GQQAKNQAKAFHEAVGIGGIIITKLDGTA 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHH----HHH-HHHhcccceeEEEeccc---cHHHHHHHHHHHhcCCCCEEEEecccCCC
Confidence 37999999998764333 2111 111 11346799999999976 23333444444332234578999999753
No 360
>KOG0070|consensus
Probab=97.70 E-value=0.0001 Score=68.41 Aligned_cols=110 Identities=16% Similarity=0.219 Sum_probs=70.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|--||||||+++.|--.++..+. || .-..++.+
T Consensus 19 ~IlmlGLD~AGKTTILykLk~~E~vttv------PT------------------------------------iGfnVE~v 56 (181)
T KOG0070|consen 19 RILMVGLDAAGKTTILYKLKLGEIVTTV------PT------------------------------------IGFNVETV 56 (181)
T ss_pred EEEEEeccCCCceeeeEeeccCCcccCC------Cc------------------------------------cccceeEE
Confidence 4999999999999999998665553211 11 11223334
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHH-HHHHHhc---CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEA-ILDQLKG---REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~-ll~~l~~---~~~~iii 252 (468)
.+.+ ..++++|.-|...- ...-..+..+.+.+|||+|++...--.+.++ +...+.. ...|+++
T Consensus 57 ~ykn---~~f~vWDvGGq~k~----------R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv 123 (181)
T KOG0070|consen 57 EYKN---ISFTVWDVGGQEKL----------RPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLV 123 (181)
T ss_pred EEcc---eEEEEEecCCCccc----------ccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEE
Confidence 4332 57999999997542 1224556889999999999975221122222 2233332 2468999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
..||-|+..
T Consensus 124 ~aNKqD~~~ 132 (181)
T KOG0070|consen 124 FANKQDLPG 132 (181)
T ss_pred Eechhhccc
Confidence 999999864
No 361
>KOG2484|consensus
Probab=97.65 E-value=3.4e-05 Score=79.12 Aligned_cols=33 Identities=27% Similarity=0.138 Sum_probs=27.5
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLR 126 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~ 126 (468)
+.-.|.|+|-||+||||+||+|..+....|+..
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~ 283 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGNV 283 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCCCC
Confidence 344599999999999999999999998765443
No 362
>KOG0076|consensus
Probab=97.64 E-value=0.00012 Score=67.42 Aligned_cols=97 Identities=14% Similarity=0.205 Sum_probs=57.6
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCC----CHhHHHHHHHHhcCCCcEEEEEeCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDV----GPETEAILDQLKGREYQTRIILNKADQ 259 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i----~~e~~~ll~~l~~~~~~iiiVlNK~D~ 259 (468)
..+.|||.-|--+- .+.-..+...+++|+++|||..... +..++.++..=.-.+.|+++.+||-|+
T Consensus 69 ~~l~fwdlgGQe~l----------rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~ 138 (197)
T KOG0076|consen 69 APLSFWDLGGQESL----------RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDL 138 (197)
T ss_pred ceeEEEEcCChHHH----------HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhh
Confidence 56999999886542 2334445678999999999976221 112233332222235799999999998
Q ss_pred CChHHHHHHhhhhhhccccccCCCCCCeeccCC
Q psy13475 260 VKPEELMRVQGTLIWNISPLMSSSEPPVMYSTS 292 (468)
Q Consensus 260 v~~~el~~v~~~l~~~ls~~~~~pe~p~vy~~s 292 (468)
-+..+..++.+. +.+.+..+.+..|..-+++
T Consensus 139 q~~~~~~El~~~--~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 139 QNAMEAAELDGV--FGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred hhhhhHHHHHHH--hhhhhhcCCccCccccchh
Confidence 765443333221 2234556666655554444
No 363
>KOG0097|consensus
Probab=97.61 E-value=0.00021 Score=63.51 Aligned_cols=115 Identities=17% Similarity=0.227 Sum_probs=73.3
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
-.|+|..|+|||-|+..+...++...-++ |- |-.|-.++..+.
T Consensus 14 yiiigdmgvgkscllhqftekkfmadcph------ti-------------------------------gvefgtriievs 56 (215)
T KOG0097|consen 14 YIIIGDMGVGKSCLLHQFTEKKFMADCPH------TI-------------------------------GVEFGTRIIEVS 56 (215)
T ss_pred EEEEccccccHHHHHHHHHHHHHhhcCCc------cc-------------------------------ceecceeEEEec
Confidence 67899999999999999998877421111 10 223333443332
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRIIL 254 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiVl 254 (468)
.....+.++||.|... |..+++.+...+-..++|.|.++...-.....++...+ .-+.-++++.
T Consensus 57 ---gqkiklqiwdtagqer----------fravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lig 123 (215)
T KOG0097|consen 57 ---GQKIKLQIWDTAGQER----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIG 123 (215)
T ss_pred ---CcEEEEEEeecccHHH----------HHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEec
Confidence 1124588999999543 66778888899999999999876321122223332222 2223567788
Q ss_pred eCCCCCCh
Q psy13475 255 NKADQVKP 262 (468)
Q Consensus 255 NK~D~v~~ 262 (468)
||+|+-+.
T Consensus 124 nkadle~q 131 (215)
T KOG0097|consen 124 NKADLESQ 131 (215)
T ss_pred chhhhhhc
Confidence 99998643
No 364
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.60 E-value=0.00055 Score=68.19 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=44.7
Q ss_pred cceEEEeCCCCchhhhh-hhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQ-VERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||-...... +.+ +.+... ....|.+++|+|++.- ..+...+++.... -..--+++||.|...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~e---l~~~~~--~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-~~~~~~I~TKlDet~ 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEE---MIETMG--QVEPDYICLTLSASMK--SKDMIEIITNFKD-IHIDGIVFTKFDETA 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHH---HHHHHh--hhCCCeEEEEEcCccC--HHHHHHHHHHhCC-CCCCEEEEEeecCCC
Confidence 57999999998743322 222 111111 2355789999998742 4455567776655 345678999999764
No 365
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.58 E-value=8.7e-05 Score=70.72 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.0
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.-+.|+|+|..|+|||||++.|+..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3557999999999999999999865
No 366
>PTZ00099 rab6; Provisional
Probab=97.58 E-value=0.00011 Score=68.36 Aligned_cols=68 Identities=16% Similarity=0.253 Sum_probs=44.6
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiVlNK~D~v 260 (468)
..+.|+||||..... .....++..||++|+|+|.+....-+.....+..+. ....|+++|.||+|+.
T Consensus 29 v~l~iwDt~G~e~~~----------~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 29 VRLQLWDTAGQERFR----------SLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred EEEEEEECCChHHhh----------hccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 568999999976532 223445789999999999876211112223333332 2346889999999986
Q ss_pred C
Q psy13475 261 K 261 (468)
Q Consensus 261 ~ 261 (468)
.
T Consensus 99 ~ 99 (176)
T PTZ00099 99 D 99 (176)
T ss_pred c
Confidence 4
No 367
>PRK10867 signal recognition particle protein; Provisional
Probab=97.57 E-value=0.00049 Score=72.91 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=41.0
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
..++||||||........-.. +..... .-..|-+++|+|+.. ..+.....+.+...-...-+|+||.|..
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~e--L~~i~~--~v~p~evllVlda~~---gq~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDE--LKAIKA--AVNPDEILLVVDAMT---GQDAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHH--HHHHHH--hhCCCeEEEEEeccc---HHHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 579999999977532221111 111111 125677899999854 3444444555443333457899999964
No 368
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.51 E-value=0.00055 Score=72.46 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=41.5
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
..++||||||........-+. +... .. .-..|-+++|+|+.. ..+.......+...-...-+|+||.|..
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~e--L~~i-~~-~~~p~e~lLVvda~t---gq~~~~~a~~f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEE--LAAI-KE-ILNPDEILLVVDAMT---GQDAVNTAKTFNERLGLTGVVLTKLDGD 252 (428)
T ss_pred CCEEEEeCCCccccCHHHHHH--HHHH-HH-hhCCceEEEEEeccc---hHHHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 569999999986532221111 1111 11 235788999999864 3444444454443224457889999964
No 369
>KOG3859|consensus
Probab=97.50 E-value=0.00025 Score=69.82 Aligned_cols=139 Identities=20% Similarity=0.323 Sum_probs=77.4
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+.||.+|.||||||+.|.+.++.. +|++- ..|+-.+- .+|. ...
T Consensus 45 ilCvGETg~GKsTLmdtLFNt~f~~-------~p~~H------------~~~~V~L~-----------~~Ty-----elq 89 (406)
T KOG3859|consen 45 ILCVGETGLGKSTLMDTLFNTKFES-------EPSTH------------TLPNVKLQ-----------ANTY-----ELQ 89 (406)
T ss_pred EEEeccCCccHHHHHHHHhccccCC-------CCCcc------------CCCCceee-----------cchh-----hhh
Confidence 8999999999999999999987641 11110 00000000 0110 000
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhh---hccchhH--------------HHHH--hhcccCEEEEEEcCCCCCCCHhHHH
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVE---RQFPFND--------------ACQW--FIDRADIIFLVYDPSKLDVGPETEA 238 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~---r~~d~~~--------------~~~~--~~~~aDlIllV~Da~~~~i~~e~~~ 238 (468)
.+...-.+++|||.|+++--..-. -..|+.+ .... .-.+..++++.+.++.-++..-+.-
T Consensus 90 -EsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLv 168 (406)
T KOG3859|consen 90 -ESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLV 168 (406)
T ss_pred -hcCeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHH
Confidence 112224689999999986421100 0001110 0001 1236678999998875444443433
Q ss_pred HHHHHhcCCCcEEEEEeCCCCCChHHHHHHhhhhh
Q psy13475 239 ILDQLKGREYQTRIILNKADQVKPEELMRVQGTLI 273 (468)
Q Consensus 239 ll~~l~~~~~~iiiVlNK~D~v~~~el~~v~~~l~ 273 (468)
.++.|.. ...+|-|+-|+|.++..+|.+.....|
T Consensus 169 tmk~Lds-kVNIIPvIAKaDtisK~eL~~FK~kim 202 (406)
T KOG3859|consen 169 TMKKLDS-KVNIIPVIAKADTISKEELKRFKIKIM 202 (406)
T ss_pred HHHHHhh-hhhhHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3444432 356777899999999998877755443
No 370
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.48 E-value=0.00027 Score=63.12 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=41.7
Q ss_pred HHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC--CCcEEEEEeCCCCCChHHH
Q psy13475 210 ACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR--EYQTRIILNKADQVKPEEL 265 (468)
Q Consensus 210 ~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~--~~~iiiVlNK~D~v~~~el 265 (468)
.+...++++|++++|+|+.. +.+.....+.+.+... +.|+++|+||+|+...+++
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~-p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~ 60 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARN-PLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQR 60 (141)
T ss_pred HHHHHHhhCCEEEEEEEccC-CcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHH
Confidence 46677899999999999977 4455555566666544 6899999999999865543
No 371
>KOG0465|consensus
Probab=97.47 E-value=0.00012 Score=78.61 Aligned_cols=68 Identities=29% Similarity=0.425 Sum_probs=57.2
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
..+.+|||||+.+..-+++|. +.-.|..++|+|+.. ++..+...+..+++..+.|.++-+||.|....
T Consensus 104 ~~iNiIDTPGHvDFT~EVeRA----------LrVlDGaVlvl~aV~-GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 104 YRINIIDTPGHVDFTFEVERA----------LRVLDGAVLVLDAVA-GVESQTETVWRQMKRYNVPRICFINKMDRMGA 171 (721)
T ss_pred ceeEEecCCCceeEEEEehhh----------hhhccCeEEEEEccc-ceehhhHHHHHHHHhcCCCeEEEEehhhhcCC
Confidence 789999999998755444444 667788899999987 78888888999999999999999999999854
No 372
>KOG0083|consensus
Probab=97.45 E-value=5.5e-05 Score=66.55 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=54.2
Q ss_pred cccceeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc
Q psy13475 166 GQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG 245 (468)
Q Consensus 166 g~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~ 245 (468)
|-.+++++.... .....+.++||.|... |..++..+...||.+++++|...-..-+.-...+..+.+
T Consensus 32 gid~rnkli~~~---~~kvklqiwdtagqer----------frsvt~ayyrda~allllydiankasfdn~~~wlsei~e 98 (192)
T KOG0083|consen 32 GIDFRNKLIDMD---DKKVKLQIWDTAGQER----------FRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHE 98 (192)
T ss_pred eeccccceeccC---CcEEEEEEeeccchHH----------HhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHH
Confidence 445555543322 2234689999999543 667788889999999999998652222333444544443
Q ss_pred ---CCCcEEEEEeCCCCC
Q psy13475 246 ---REYQTRIILNKADQV 260 (468)
Q Consensus 246 ---~~~~iiiVlNK~D~v 260 (468)
+...+.++.||+|+.
T Consensus 99 y~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 99 YAKEAVALMLLGNKCDLA 116 (192)
T ss_pred HHHhhHhHhhhccccccc
Confidence 345788899999985
No 373
>KOG1143|consensus
Probab=97.44 E-value=0.00015 Score=73.81 Aligned_cols=150 Identities=17% Similarity=0.244 Sum_probs=84.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccc--cC-cccccccc---cccc-c
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLA--AD-WTFSGLQK---FGQG-L 169 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~--~D-~~f~~L~~---fg~t-t 169 (468)
.|+++|.-.+|||||+--|...+.-. | --.++.+...|-. .+..|.+-. .+ +.|....+ |.+. +
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeLDn-----G--~GrARln~FRh~H--EiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGELDN-----G--NGRARLNIFRHPH--EIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred EEEEecCcccCcceeeeeeecccccC-----C--CCeeeeehhcchh--hhccCcccccchhcccccccccccchhhccc
Confidence 59999999999999998887665431 0 1112222222211 112232211 11 23433322 2221 1
Q ss_pred eeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc
Q psy13475 170 LDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ 249 (468)
Q Consensus 170 ~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ 249 (468)
.+.+ . ...-+-++|||.+|...-.+..-.+ + + --..|..++|+.|.. ++....++-+..+...+.|
T Consensus 240 aEEi---~--e~SSKlvTfiDLAGh~kY~~TTi~g--L---t---gY~Ph~A~LvVsA~~-Gi~~tTrEHLgl~~AL~iP 305 (591)
T KOG1143|consen 240 AEEI---V--EKSSKLVTFIDLAGHAKYQKTTIHG--L---T---GYTPHFACLVVSADR-GITWTTREHLGLIAALNIP 305 (591)
T ss_pred HHHH---H--hhhcceEEEeecccchhhheeeeee--c---c---cCCCceEEEEEEcCC-CCccccHHHHHHHHHhCCC
Confidence 1111 1 1111459999999987532210001 0 0 114578889999987 6666666656555566789
Q ss_pred EEEEEeCCCCCChHHHHHHh
Q psy13475 250 TRIILNKADQVKPEELMRVQ 269 (468)
Q Consensus 250 iiiVlNK~D~v~~~el~~v~ 269 (468)
++++++|+|+++++.+.+..
T Consensus 306 fFvlvtK~Dl~~~~~~~~tv 325 (591)
T KOG1143|consen 306 FFVLVTKMDLVDRQGLKKTV 325 (591)
T ss_pred eEEEEEeeccccchhHHHHH
Confidence 99999999999987665543
No 374
>KOG0464|consensus
Probab=97.39 E-value=7e-05 Score=76.96 Aligned_cols=70 Identities=26% Similarity=0.355 Sum_probs=55.4
Q ss_pred CCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 181 PLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 181 ~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
..+..|.+|||||..+..-+++|- +.--|.++.|||++. ++..+...+..+..+++.|-++.+||+|..
T Consensus 99 wkg~rinlidtpghvdf~leverc----------lrvldgavav~dasa-gve~qtltvwrqadk~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 99 WKGHRINLIDTPGHVDFRLEVERC----------LRVLDGAVAVFDASA-GVEAQTLTVWRQADKFKIPAHCFINKMDKL 167 (753)
T ss_pred cccceEeeecCCCcceEEEEHHHH----------HHHhcCeEEEEeccC-CcccceeeeehhccccCCchhhhhhhhhhh
Confidence 345789999999998754333332 455688899999988 778888788888888889999999999987
Q ss_pred C
Q psy13475 261 K 261 (468)
Q Consensus 261 ~ 261 (468)
.
T Consensus 168 ~ 168 (753)
T KOG0464|consen 168 A 168 (753)
T ss_pred h
Confidence 4
No 375
>KOG2743|consensus
Probab=97.39 E-value=0.001 Score=66.20 Aligned_cols=150 Identities=22% Similarity=0.268 Sum_probs=79.1
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEec--CCCCccc-------cCcccccCccccccc
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSW--GESPTIL-------DGTQLAADWTFSGLQ 163 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~--g~~~~~i-------~G~~l~~D~~f~~L~ 163 (468)
.+-|.-.+.|.-|+|||||+|+++-.+.. . ++.+++. |+...+- .|..+..+| -
T Consensus 55 ~rIPvtIITGyLGaGKtTLLn~Il~~~hg---K---------RIAVIlNEfGes~die~sl~~~~~gg~lyEew-----v 117 (391)
T KOG2743|consen 55 ARIPVTIITGYLGAGKTTLLNYILTGQHG---K---------RIAVILNEFGESSDIEKSLAVSQEGGELYEEW-----V 117 (391)
T ss_pred CccceEEEEecccCChHHHHHHHHccCCC---c---------eEEEEhhhcccchhhhHHHHhccccchHHHHH-----H
Confidence 46688899999999999999999977652 2 3445543 3321110 011111110 0
Q ss_pred cccccceeeeEEeecC------------CCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC
Q psy13475 164 KFGQGLLDRLRGLQLP------------HPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD 231 (468)
Q Consensus 164 ~fg~tt~~~i~~~~~~------------~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~ 231 (468)
...+-..|..+. .+.....+++.|.|+..+..-.+.. +.+.....--..|.|+-|+|+....
T Consensus 118 ----~L~NGClCCtVk~~gvraie~lvqkkGkfD~IllETTGlAnPaPia~~F--w~dd~l~sdVkLDGIVTvvD~K~~~ 191 (391)
T KOG2743|consen 118 ----ELRNGCLCCTVKDNGVRAIENLVQKKGKFDHILLETTGLANPAPIASMF--WLDDELGSDVKLDGIVTVVDAKHIL 191 (391)
T ss_pred ----HhcCCeEEEEecchHHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHH--hhhhhhcCceeeeeEEEEEehhhHH
Confidence 011112222221 1222457899999999875433322 1111111112458899999985421
Q ss_pred -----CCH--hHHHHHHHHhcCCCcEEEEEeCCCCCChHHHHHH
Q psy13475 232 -----VGP--ETEAILDQLKGREYQTRIILNKADQVKPEELMRV 268 (468)
Q Consensus 232 -----i~~--e~~~ll~~l~~~~~~iiiVlNK~D~v~~~el~~v 268 (468)
.++ .+.+...++ ...-++++||.|++..+++..+
T Consensus 192 ~~Lde~k~~g~i~EA~~Qi---A~AD~II~NKtDli~~e~~~~l 232 (391)
T KOG2743|consen 192 KHLDEEKPDGLINEATRQI---ALADRIIMNKTDLVSEEEVKKL 232 (391)
T ss_pred hhhcccCcccchHHHHHHH---hhhheeeeccccccCHHHHHHH
Confidence 000 111222222 2234689999999988776544
No 376
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.38 E-value=0.00036 Score=63.34 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=39.0
Q ss_pred HHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc--CCCcEEEEEeCCCCCChHHH
Q psy13475 212 QWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG--REYQTRIILNKADQVKPEEL 265 (468)
Q Consensus 212 ~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~--~~~~iiiVlNK~D~v~~~el 265 (468)
+..++.||+|++|+|++. +.......+.+.+.. .+.|+++|+||+|+.+.+++
T Consensus 3 ~~~l~~aD~il~VvD~~~-p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~ 57 (157)
T cd01858 3 YKVIDSSDVVIQVLDARD-PMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVT 57 (157)
T ss_pred hHhhhhCCEEEEEEECCC-CccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHH
Confidence 456889999999999987 334444555555543 23799999999999876554
No 377
>KOG0088|consensus
Probab=97.35 E-value=0.00018 Score=65.22 Aligned_cols=112 Identities=19% Similarity=0.282 Sum_probs=69.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.--+|||||+=..+..++.. .+ .+.|+ ..|.++-..+
T Consensus 15 K~VLLGEGCVGKtSLVLRy~EnkFn~--kH--------------------------------lsTlQ---ASF~~kk~n~ 57 (218)
T KOG0088|consen 15 KIVLLGEGCVGKTSLVLRYVENKFNC--KH--------------------------------LSTLQ---ASFQNKKVNV 57 (218)
T ss_pred EEEEEcCCccchhHHHHHHHHhhcch--hh--------------------------------HHHHH---HHHhhccccc
Confidence 48999999999999988888777642 11 01111 1122211111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHH---H---HHHHhcCCCcE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEA---I---LDQLKGREYQT 250 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~---l---l~~l~~~~~~i 250 (468)
.....++.||||+|..... .+.-. +...+|.+|+|+|.+. .+.+.. + +..+.+...-+
T Consensus 58 ---ed~ra~L~IWDTAGQErfH-ALGPI---------YYRgSnGalLVyDITD---rdSFqKVKnWV~Elr~mlGnei~l 121 (218)
T KOG0088|consen 58 ---EDCRADLHIWDTAGQERFH-ALGPI---------YYRGSNGALLVYDITD---RDSFQKVKNWVLELRTMLGNEIEL 121 (218)
T ss_pred ---ccceeeeeeeeccchHhhh-ccCce---------EEeCCCceEEEEeccc---hHHHHHHHHHHHHHHHHhCCeeEE
Confidence 1223579999999964321 11222 2578899999999876 233332 2 33445667789
Q ss_pred EEEEeCCCCCC
Q psy13475 251 RIILNKADQVK 261 (468)
Q Consensus 251 iiVlNK~D~v~ 261 (468)
+||.||+|+-.
T Consensus 122 ~IVGNKiDLEe 132 (218)
T KOG0088|consen 122 LIVGNKIDLEE 132 (218)
T ss_pred EEecCcccHHH
Confidence 99999999854
No 378
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.33 E-value=0.0007 Score=80.27 Aligned_cols=128 Identities=17% Similarity=0.292 Sum_probs=69.9
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
..-|--+|+|++|+||||+|+.- |.+++.. ...|...+. | .++| ++
T Consensus 109 Y~LPWYlviG~~gsGKtt~l~~s-gl~~pl~-~~~~~~~~~----------------~--------------~~~t-~~- 154 (1169)
T TIGR03348 109 YDLPWYLVIGPPGSGKTTLLQNS-GLKFPLA-ERLGAAALR----------------G--------------VGGT-RN- 154 (1169)
T ss_pred hcCCCEEEECCCCCchhHHHHhC-CCCCcCc-hhhcccccc----------------C--------------CCCC-cc-
Confidence 35688999999999999999986 6665421 111110000 0 0122 11
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhhh---h----hhhccchhHHHHHh--hcccCEEEEEEcCCCCCCC-HhH-H----
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIRK---Q----VERQFPFNDACQWF--IDRADIIFLVYDPSKLDVG-PET-E---- 237 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~~---~----~~r~~d~~~~~~~~--~~~aDlIllV~Da~~~~i~-~e~-~---- 237 (468)
+..- ...+.++|||+|..-... . .-.. |.+..+.. -.-.|.||+++|...+-.. ++. .
T Consensus 155 c~ww-----f~~~avliDtaG~y~~~~~~~~~~~~~W~~--fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~ 227 (1169)
T TIGR03348 155 CDWW-----FTDEAVLIDTAGRYTTQDSDPEEDAAAWLG--FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHAR 227 (1169)
T ss_pred cceE-----ecCCEEEEcCCCccccCCCcccccHHHHHH--HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHH
Confidence 1111 114688999999553211 1 1112 22222222 2457999999998765222 211 1
Q ss_pred ---HHHHHHh---cCCCcEEEEEeCCCCCC
Q psy13475 238 ---AILDQLK---GREYQTRIILNKADQVK 261 (468)
Q Consensus 238 ---~ll~~l~---~~~~~iiiVlNK~D~v~ 261 (468)
.-++.+. +...|+.+|+||+|++.
T Consensus 228 ~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 228 AIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 1112222 44679999999999873
No 379
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.32 E-value=0.00063 Score=68.93 Aligned_cols=93 Identities=19% Similarity=0.252 Sum_probs=49.0
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccC-----EEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRAD-----IIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKAD 258 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aD-----lIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D 258 (468)
..++||||.|-......+-.. + +-+...+...+ -+++++||... ..-..-.+.+.+.-.=.=+|+||+|
T Consensus 222 ~DvvliDTAGRLhnk~nLM~E--L-~KI~rV~~k~~~~ap~e~llvlDAttG---qnal~QAk~F~eav~l~GiIlTKlD 295 (340)
T COG0552 222 IDVVLIDTAGRLHNKKNLMDE--L-KKIVRVIKKDDPDAPHEILLVLDATTG---QNALSQAKIFNEAVGLDGIILTKLD 295 (340)
T ss_pred CCEEEEeCcccccCchhHHHH--H-HHHHHHhccccCCCCceEEEEEEcccC---hhHHHHHHHHHHhcCCceEEEEecc
Confidence 579999999987665442111 1 12222334444 38899999762 2222112222222223357899999
Q ss_pred CCChHHHHHHhhhhhhccccccCCCCCCeeccCC
Q psy13475 259 QVKPEELMRVQGTLIWNISPLMSSSEPPVMYSTS 292 (468)
Q Consensus 259 ~v~~~el~~v~~~l~~~ls~~~~~pe~p~vy~~s 292 (468)
-... |-.+.+++..+ ..|..|++=
T Consensus 296 gtAK-------GG~il~I~~~l---~~PI~fiGv 319 (340)
T COG0552 296 GTAK-------GGIILSIAYEL---GIPIKFIGV 319 (340)
T ss_pred cCCC-------cceeeeHHHHh---CCCEEEEeC
Confidence 5432 22233344333 367777763
No 380
>PRK01889 GTPase RsgA; Reviewed
Probab=97.29 E-value=0.0002 Score=74.14 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCccc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYS 121 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~ 121 (468)
+++++|++|+|||||+|+|+|...+
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~ 221 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQ 221 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhccc
Confidence 7999999999999999999997553
No 381
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.27 E-value=0.00066 Score=68.12 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=20.6
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|.|+|.+|+||||||+.|++.
T Consensus 106 ~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 106 VLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999875
No 382
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.13 E-value=0.00095 Score=60.28 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=40.5
Q ss_pred hHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCChHH
Q psy13475 208 NDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKPEE 264 (468)
Q Consensus 208 ~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~~e 264 (468)
.+..+..+.++|++++|+|++. ........+...+...+.|+++|+||+|+.+.+.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~-~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~ 58 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARD-PELTRSRKLERYVLELGKKLLIVLNKADLVPKEV 58 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCC-CcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHH
Confidence 3456666788999999999976 3333444555555555789999999999975543
No 383
>KOG0469|consensus
Probab=97.13 E-value=0.00047 Score=72.53 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=88.8
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccc--cCcccccCccccccccccccceeeeEE
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTIL--DGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i--~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
+.++.....|||||-..|+..---+.+.+.|- .+|+.-...++++.+ ...+..- |. +...+.+..
T Consensus 22 mSVIAHVDHGKSTLTDsLV~kAgIis~akaGe----~Rf~DtRkDEQeR~iTIKStAISl---~~------e~~~~dl~~ 88 (842)
T KOG0469|consen 22 MSVIAHVDHGKSTLTDSLVQKAGIISAAKAGE----TRFTDTRKDEQERGITIKSTAISL---FF------EMSDDDLKF 88 (842)
T ss_pred ceEEEEecCCcchhhHHHHHhhceeeecccCC----ccccccccchhhcceEeeeeeeee---hh------hhhHhHHHH
Confidence 56677888999999999987643332233332 334433333333322 1111110 00 000001111
Q ss_pred eecC-CCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEE
Q psy13475 176 LQLP-HPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIIL 254 (468)
Q Consensus 176 ~~~~-~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVl 254 (468)
+.-+ .....-|.+||+||+.+.. ...-.+++-.|..++|+|.-. ++.-+.+.++.+.-....+-++|+
T Consensus 89 ~k~~~d~~~FLiNLIDSPGHVDFS----------SEVTAALRVTDGALVVVDcv~-GvCVQTETVLrQA~~ERIkPvlv~ 157 (842)
T KOG0469|consen 89 IKQEGDGNGFLINLIDSPGHVDFS----------SEVTAALRVTDGALVVVDCVS-GVCVQTETVLRQAIAERIKPVLVM 157 (842)
T ss_pred hcCCCCCcceeEEeccCCCcccch----------hhhhheeEeccCcEEEEEccC-ceEechHHHHHHHHHhhccceEEe
Confidence 1111 1112348999999998743 334444777899999999876 666566666755443344556889
Q ss_pred eCCCC------CChHHHHHHhhhhhhccccccC
Q psy13475 255 NKADQ------VKPEELMRVQGTLIWNISPLMS 281 (468)
Q Consensus 255 NK~D~------v~~~el~~v~~~l~~~ls~~~~ 281 (468)
||+|. ++.++|.+.+.....++..++.
T Consensus 158 NK~DRAlLELq~~~EeLyqtf~R~VE~vNviis 190 (842)
T KOG0469|consen 158 NKMDRALLELQLSQEELYQTFQRIVENVNVIIS 190 (842)
T ss_pred ehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEE
Confidence 99996 3556676666555555544443
No 384
>KOG0460|consensus
Probab=97.10 E-value=0.0015 Score=66.16 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=48.5
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC-CcEEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE-YQTRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~-~~iiiVlNK~D~v~~ 262 (468)
..+.=+|+||+.+--+.+-.+ +..-|..|+|+.++. +.-++.++-+-..+..+ ..+++-+||+|.++.
T Consensus 117 RhYaH~DCPGHADYIKNMItG----------aaqMDGaILVVaatD-G~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d 185 (449)
T KOG0460|consen 117 RHYAHTDCPGHADYIKNMITG----------AAQMDGAILVVAATD-GPMPQTREHLLLARQVGVKHIVVFINKVDLVDD 185 (449)
T ss_pred cccccCCCCchHHHHHHhhcC----------ccccCceEEEEEcCC-CCCcchHHHHHHHHHcCCceEEEEEecccccCC
Confidence 567779999988743332222 456699999999987 44555554443334444 467777999999966
Q ss_pred HHHHHH
Q psy13475 263 EELMRV 268 (468)
Q Consensus 263 ~el~~v 268 (468)
+++.+.
T Consensus 186 ~e~leL 191 (449)
T KOG0460|consen 186 PEMLEL 191 (449)
T ss_pred HHHHHH
Confidence 555444
No 385
>KOG0393|consensus
Probab=96.94 E-value=0.00089 Score=63.40 Aligned_cols=115 Identities=10% Similarity=0.108 Sum_probs=66.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.++|||...+|||+|+-......++. .-..+ .|-+....+
T Consensus 6 K~VvVGDga~GKT~ll~~~t~~~fp~----------~yvPT------------------------------VFdnys~~v 45 (198)
T KOG0393|consen 6 KCVVVGDGAVGKTCLLISYTTNAFPE----------EYVPT------------------------------VFDNYSANV 45 (198)
T ss_pred EEEEECCCCcCceEEEEEeccCcCcc----------cccCe------------------------------EEccceEEE
Confidence 48999999999999987766554432 11111 111111222
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHh-HHHHHHHHhcC--CCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPE-TEAILDQLKGR--EYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e-~~~ll~~l~~~--~~~iiiV 253 (468)
.+.......+.++||.|-.+-.. .. --...++|++|++|+......-.+ ....+-.++.+ +.|+++|
T Consensus 46 ~V~dg~~v~L~LwDTAGqedYDr--------lR--plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLV 115 (198)
T KOG0393|consen 46 TVDDGKPVELGLWDTAGQEDYDR--------LR--PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILV 115 (198)
T ss_pred EecCCCEEEEeeeecCCCccccc--------cc--ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEE
Confidence 32223335689999999765311 01 013578899999888665211111 11233334433 3799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.+|.|+.+
T Consensus 116 Gtk~DLr~ 123 (198)
T KOG0393|consen 116 GTKADLRD 123 (198)
T ss_pred eehHHhhh
Confidence 99999984
No 386
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.92 E-value=0.0017 Score=62.89 Aligned_cols=63 Identities=27% Similarity=0.375 Sum_probs=40.8
Q ss_pred cceEEEeCC-CCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC-CcEEEEEeCCCCC
Q psy13475 184 EKINIVEIP-GILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE-YQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTP-Gi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~-~~iiiVlNK~D~v 260 (468)
..+++|||- |+-- ..|+ ..+.+|.++.|+|++.-.+. ..+++-+...+.+ +++.+|+||+|..
T Consensus 134 ~e~VivDtEAGiEH----fgRg---------~~~~vD~vivVvDpS~~sl~-taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEH----FGRG---------TIEGVDLVIVVVDPSYKSLR-TAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhh----hccc---------cccCCCEEEEEeCCcHHHHH-HHHHHHHHHHHhCCceEEEEEeeccch
Confidence 569999994 5432 2333 37889999999999762211 1122222233445 7999999999965
No 387
>KOG0780|consensus
Probab=96.86 E-value=0.005 Score=63.44 Aligned_cols=71 Identities=23% Similarity=0.236 Sum_probs=44.6
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||.|-+..+..+-.. +.++.. +-..|.||+|+|++- ...-..-...++..-.---+++||.|-..
T Consensus 184 fdvIIvDTSGRh~qe~sLfeE--M~~v~~--ai~Pd~vi~VmDasi---GQaae~Qa~aFk~~vdvg~vIlTKlDGha 254 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQEASLFEE--MKQVSK--AIKPDEIIFVMDASI---GQAAEAQARAFKETVDVGAVILTKLDGHA 254 (483)
T ss_pred CcEEEEeCCCchhhhHHHHHH--HHHHHh--hcCCCeEEEEEeccc---cHhHHHHHHHHHHhhccceEEEEecccCC
Confidence 569999999988655443222 222222 235799999999965 44444444444443334467899999753
No 388
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.85 E-value=0.0025 Score=65.53 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=51.6
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHH-hhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQW-FIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~-~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
.-+.||||-|+..- +.-.++- +-+..|-.++++.|+. +.+...++-+..+...+.|+++|+||+|+++.
T Consensus 201 klVsfVDtvGHEpw---------LrTtirGL~gqk~dYglLvVaAdd-G~~~~tkEHLgi~~a~~lPviVvvTK~D~~~d 270 (527)
T COG5258 201 KLVSFVDTVGHEPW---------LRTTIRGLLGQKVDYGLLVVAADD-GVTKMTKEHLGIALAMELPVIVVVTKIDMVPD 270 (527)
T ss_pred cEEEEEecCCccHH---------HHHHHHHHhccccceEEEEEEccC-CcchhhhHhhhhhhhhcCCEEEEEEecccCcH
Confidence 44899999997431 1111222 2468899999999987 66666666666566667899999999999976
Q ss_pred HHHH
Q psy13475 263 EELM 266 (468)
Q Consensus 263 ~el~ 266 (468)
+.+.
T Consensus 271 dr~~ 274 (527)
T COG5258 271 DRFQ 274 (527)
T ss_pred HHHH
Confidence 5443
No 389
>KOG0071|consensus
Probab=96.82 E-value=0.016 Score=51.77 Aligned_cols=116 Identities=20% Similarity=0.255 Sum_probs=69.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
-|+.+|-.++||||++-.|.-.... ...||+ --.++.+
T Consensus 19 ~ilmlGLd~aGKTtiLyKLkl~~~~------~~ipTv------------------------------------GFnvetV 56 (180)
T KOG0071|consen 19 RILMLGLDAAGKTTILYKLKLGQSV------TTIPTV------------------------------------GFNVETV 56 (180)
T ss_pred eEEEEecccCCceehhhHHhcCCCc------cccccc------------------------------------ceeEEEE
Confidence 3999999999999999998654321 112222 1122333
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhc---CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKG---REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~---~~~~iii 252 (468)
...+ ..+.++|.-|-...+ ...+.+....-.+|||+|+...+--++.+ ++-..+.. ...++.|
T Consensus 57 tykN---~kfNvwdvGGqd~iR----------plWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~Lv 123 (180)
T KOG0071|consen 57 TYKN---VKFNVWDVGGQDKIR----------PLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILI 123 (180)
T ss_pred Eeee---eEEeeeeccCchhhh----------HHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEE
Confidence 3222 357889998866532 22445577888999999987532112222 22233322 2357888
Q ss_pred EEeCCCCCC---hHHHHH
Q psy13475 253 ILNKADQVK---PEELMR 267 (468)
Q Consensus 253 VlNK~D~v~---~~el~~ 267 (468)
..||-|+.+ ++++..
T Consensus 124 lANkQDlp~A~~pqei~d 141 (180)
T KOG0071|consen 124 LANKQDLPDAMKPQEIQD 141 (180)
T ss_pred EecCcccccccCHHHHHH
Confidence 899999874 455433
No 390
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.81 E-value=0.0021 Score=59.76 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=36.7
Q ss_pred CEEEEEEcCCCCCCCHhHHHHHHH--HhcCCCcEEEEEeCCCCCChHHHHHH
Q psy13475 219 DIIFLVYDPSKLDVGPETEAILDQ--LKGREYQTRIILNKADQVKPEELMRV 268 (468)
Q Consensus 219 DlIllV~Da~~~~i~~e~~~ll~~--l~~~~~~iiiVlNK~D~v~~~el~~v 268 (468)
|+|++|+|+.. +.+.....+.+. +...+.|+++|+||+|+++++.+...
T Consensus 1 DvVl~VvDar~-p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~ 51 (172)
T cd04178 1 DVILEVLDARD-PLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKW 51 (172)
T ss_pred CEEEEEEECCC-CCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHH
Confidence 89999999987 445544555555 55556899999999999987765444
No 391
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.80 E-value=0.0026 Score=63.50 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=39.5
Q ss_pred HHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCChHHH
Q psy13475 209 DACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKPEEL 265 (468)
Q Consensus 209 ~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~~el 265 (468)
+.+...++.||+|++|+|+.. +.+.+...+.+.+. +.|+++|+||+|+++..+.
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~-p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~ 66 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARI-PLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVT 66 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCC-CCCCCChhHHHHHC--CCCEEEEEEccccCCHHHH
Confidence 445666899999999999976 44544445555553 4799999999999765443
No 392
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.76 E-value=0.0023 Score=59.01 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=38.3
Q ss_pred HHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCChHH
Q psy13475 209 DACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKPEE 264 (468)
Q Consensus 209 ~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~~e 264 (468)
..++..+++||+|++|+|++. +.......+++.+. +.|+++|+||+|+.+.++
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~-~~~~~~~~i~~~~~--~k~~ilVlNK~Dl~~~~~ 63 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARI-PLSSRNPLLEKILG--NKPRIIVLNKADLADPKK 63 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccC-ccCcCChhhHhHhc--CCCEEEEEehhhcCChHH
Confidence 445677999999999999976 33433344555543 368999999999975543
No 393
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.74 E-value=0.011 Score=53.91 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=42.6
Q ss_pred ceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC-CcEEEEEeCCCCC
Q psy13475 185 KINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE-YQTRIILNKADQV 260 (468)
Q Consensus 185 ~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~-~~iiiVlNK~D~v 260 (468)
.+++|||||-... .+...+..+|.++++++++...+ .....+++.++..+ ....+|+|++|..
T Consensus 64 d~viiD~p~~~~~------------~~~~~l~~ad~viiv~~~~~~s~-~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER------------GFITAIAPADEALLVTTPEISSL-RDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH------------HHHHHHHhCCcEEEEeCCCcchH-HHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 7999999975432 12334678999999999876432 23345556555433 3567899999865
No 394
>KOG0072|consensus
Probab=96.72 E-value=0.0073 Score=54.19 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=44.4
Q ss_pred ceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC-CCHhHHHHHHHHhc---CCCcEEEEEeCCCCC
Q psy13475 185 KINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD-VGPETEAILDQLKG---REYQTRIILNKADQV 260 (468)
Q Consensus 185 ~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~-i~~e~~~ll~~l~~---~~~~iiiVlNK~D~v 260 (468)
.+.++|.-|-.+. ..-.+.+.++.|.+|+|+|++..+ ++..-.++...|.+ ....+++++||.|..
T Consensus 63 k~~vwdLggqtSi----------rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~ 132 (182)
T KOG0072|consen 63 KFQVWDLGGQTSI----------RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYS 132 (182)
T ss_pred cceeeEccCcccc----------cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccch
Confidence 4778898876653 223556688999999999997643 33333333333332 235788899999976
Q ss_pred Ch
Q psy13475 261 KP 262 (468)
Q Consensus 261 ~~ 262 (468)
..
T Consensus 133 ~~ 134 (182)
T KOG0072|consen 133 GA 134 (182)
T ss_pred hh
Confidence 43
No 395
>KOG1534|consensus
Probab=96.70 E-value=0.0012 Score=62.76 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=17.7
Q ss_pred EEEeccCCCChhhHHHHHh
Q psy13475 98 VLFMGPWSGGKSSIINYLL 116 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Ll 116 (468)
++|+|+.|+||||+.+.+.
T Consensus 6 ~lV~GpAgSGKSTyC~~~~ 24 (273)
T KOG1534|consen 6 QLVMGPAGSGKSTYCSSMY 24 (273)
T ss_pred EEEEccCCCCcchHHHHHH
Confidence 7899999999999999985
No 396
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.68 E-value=0.0079 Score=62.47 Aligned_cols=26 Identities=31% Similarity=0.590 Sum_probs=22.6
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
..+.|+|+|+.+||||||.++|+++-
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~~ 97 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANKL 97 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHHH
Confidence 56789999999999999988887653
No 397
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.67 E-value=0.01 Score=47.86 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=26.7
Q ss_pred ceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCC
Q psy13475 185 KINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKL 230 (468)
Q Consensus 185 ~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~ 230 (468)
+++++|+||........ .......+|.+++++++...
T Consensus 35 d~iivD~~~~~~~~~~~---------~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 35 DYVLIDTPPGLGLLVLL---------CLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred CEEEEeCCCCccchhhh---------hhhhhhhCCEEEEecCCchh
Confidence 79999999876542110 24457788999999998764
No 398
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.66 E-value=0.019 Score=53.62 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=22.8
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
....++++|+.|+|||||++.|.|..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34479999999999999999999964
No 399
>PRK13695 putative NTPase; Provisional
Probab=96.65 E-value=0.0051 Score=56.77 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=30.8
Q ss_pred HHHHHhhcccCEEEEEEc---CCCCCCCHhHHHHHHHHhcCCCcEEEEEeCC
Q psy13475 209 DACQWFIDRADIIFLVYD---PSKLDVGPETEAILDQLKGREYQTRIILNKA 257 (468)
Q Consensus 209 ~~~~~~~~~aDlIllV~D---a~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~ 257 (468)
..+...+.++|+ +++| +.. ..+..+.+.+..+...+.++++|+||.
T Consensus 88 ~l~~~~l~~~~~--lllDE~~~~e-~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 88 PALERALEEADV--IIIDEIGKME-LKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred HHHHhccCCCCE--EEEECCCcch-hhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 344555678887 4677 332 334556677766666778999999985
No 400
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.65 E-value=0.029 Score=58.91 Aligned_cols=70 Identities=21% Similarity=0.213 Sum_probs=45.7
Q ss_pred cceEEEeCCCCchhhhhh-hhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQV-ERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~-~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||.|-+.....+ ++. ..+ .-.-+.|-+|+|+|+.. .++-....+.+.+.-.=.=+|+||.|.-.
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El----~~I-k~~~~P~E~llVvDam~---GQdA~~~A~aF~e~l~itGvIlTKlDGda 253 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDEL----KEI-KEVINPDETLLVVDAMI---GQDAVNTAKAFNEALGITGVILTKLDGDA 253 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHH----HHH-HhhcCCCeEEEEEeccc---chHHHHHHHHHhhhcCCceEEEEcccCCC
Confidence 579999999988654442 221 111 22457799999999965 45555555555544334467999999764
No 401
>KOG0466|consensus
Probab=96.64 E-value=0.0015 Score=65.11 Aligned_cols=141 Identities=19% Similarity=0.197 Sum_probs=71.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEE-EecCC--------CCccccCcccccCccccccccccc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNI-LSWGE--------SPTILDGTQLAADWTFSGLQKFGQ 167 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~-i~~g~--------~~~~i~G~~l~~D~~f~~L~~fg~ 167 (468)
-|.-+|..-.||||++.++.|-.-. -.+ .+- ...+++ +-|.+ .....|+ -...||.
T Consensus 40 NIGTIGHVAHGKSTvVkAiSGv~Tv--rFK--~EL-ERNITIKLGYANAKIYkc~~~kCprP~----------cy~s~gS 104 (466)
T KOG0466|consen 40 NIGTIGHVAHGKSTVVKAISGVHTV--RFK--NEL-ERNITIKLGYANAKIYKCDDPKCPRPG----------CYRSFGS 104 (466)
T ss_pred eecceeccccCcceeeeeeccceEE--Eeh--hhh-hcceeEEeccccceEEecCCCCCCCcc----------hhhccCC
Confidence 3888999999999999999885321 000 000 011111 11111 1111111 1222344
Q ss_pred cceeeeEEeecCC----CCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH---HHH
Q psy13475 168 GLLDRLRGLQLPH----PLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE---AIL 240 (468)
Q Consensus 168 tt~~~i~~~~~~~----~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~---~ll 240 (468)
..-++..|-.... ....++.|||+||..--... ...-+.--|..++++.+...-..++.. ..+
T Consensus 105 ~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaT----------MLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav 174 (466)
T KOG0466|consen 105 SKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMAT----------MLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV 174 (466)
T ss_pred CCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHH----------HhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH
Confidence 3333333332211 12357999999997542111 111123347778888776532233333 333
Q ss_pred HHHhcCCCcEEEEEeCCCCCChHH
Q psy13475 241 DQLKGREYQTRIILNKADQVKPEE 264 (468)
Q Consensus 241 ~~l~~~~~~iiiVlNK~D~v~~~e 264 (468)
+.++- +.++++-||+|++..++
T Consensus 175 eiM~L--khiiilQNKiDli~e~~ 196 (466)
T KOG0466|consen 175 EIMKL--KHIIILQNKIDLIKESQ 196 (466)
T ss_pred HHhhh--ceEEEEechhhhhhHHH
Confidence 33322 47888999999997654
No 402
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.61 E-value=0.015 Score=51.85 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=43.1
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc--CCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG--REYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~--~~~~iiiVlNK~D~v 260 (468)
.++++||||+..+. .....+..+|.++++++++...+. ....+++.+.. ...++.+|+|+++..
T Consensus 45 yd~VIiD~p~~~~~------------~~~~~l~~aD~vviv~~~~~~s~~-~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGISD------------NVLDFFLAADEVIVVTTPEPTSIT-DAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCCCH------------HHHHHHHhCCeEEEEcCCChhHHH-HHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 67999999985432 234558889999999999764222 22344555532 245788999999744
No 403
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.61 E-value=0.009 Score=56.32 Aligned_cols=26 Identities=27% Similarity=0.590 Sum_probs=23.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCCccc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYS 121 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~ 121 (468)
-++.++|++|+||||||+.|.+..-+
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 37999999999999999999998664
No 404
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.46 E-value=0.0043 Score=62.29 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=38.7
Q ss_pred HHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCChHH
Q psy13475 209 DACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKPEE 264 (468)
Q Consensus 209 ~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~~e 264 (468)
+..+..++.||+|++|+|+.. +.+.+...+.+.+. +.|+++|+||+|+.+..+
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~-p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~ 68 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARI-PLSSENPMIDKIIG--NKPRLLILNKSDLADPEV 68 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCC-CCCCCChhHHHHhC--CCCEEEEEEchhcCCHHH
Confidence 335666899999999999976 44544444555443 579999999999976543
No 405
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.45 E-value=0.025 Score=59.30 Aligned_cols=146 Identities=21% Similarity=0.247 Sum_probs=74.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccC-ccccccccccccceee---
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAAD-WTFSGLQKFGQGLLDR--- 172 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D-~~f~~L~~fg~tt~~~--- 172 (468)
.+.|||+.-+||||||..+...-+.+ .+..+ .. ...+.| +|-++-.+---||--+
T Consensus 19 YiGVVGPVRTGKSTFIKRFMel~VlP---nI~d~-------------~~-----reRa~DELPQS~aGktImTTEPKFiP 77 (492)
T PF09547_consen 19 YIGVVGPVRTGKSTFIKRFMELLVLP---NIEDE-------------YE-----RERARDELPQSGAGKTIMTTEPKFIP 77 (492)
T ss_pred EEEeecCcccCchhHHHHHHHHhcCC---CCCCH-------------HH-----HHHhhhcCCcCCCCCceeccCCcccC
Confidence 69999999999999999998754321 11000 00 000001 1111110000011111
Q ss_pred --eEEeecCCCCCcceEEEeCCCCchhhh---------------hhhhccchhHHHHH----hhcccCEEEEE--EcCCC
Q psy13475 173 --LRGLQLPHPLLEKINIVEIPGILEIRK---------------QVERQFPFNDACQW----FIDRADIIFLV--YDPSK 229 (468)
Q Consensus 173 --i~~~~~~~~~l~~i~lIDTPGi~~~~~---------------~~~r~~d~~~~~~~----~~~~aDlIllV--~Da~~ 229 (468)
-..+.+......++.+||+-|+.-... ..+...+|.+.|.- .+.+-.-|-+| .|.+-
T Consensus 78 ~eAv~I~l~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi 157 (492)
T PF09547_consen 78 NEAVEITLDDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSI 157 (492)
T ss_pred CcceEEEecCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCc
Confidence 122333334445688888888752110 01223455555432 23332333333 34443
Q ss_pred CCCCH-----hHHHHHHHHhcCCCcEEEEEeCCCCCChH
Q psy13475 230 LDVGP-----ETEAILDQLKGREYQTRIILNKADQVKPE 263 (468)
Q Consensus 230 ~~i~~-----e~~~ll~~l~~~~~~iiiVlNK~D~v~~~ 263 (468)
.++.. ...++++.|+..++|++++||=.+-.+.+
T Consensus 158 ~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~e 196 (492)
T PF09547_consen 158 TDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSEE 196 (492)
T ss_pred cCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHH
Confidence 23332 24578899999999999999998866543
No 406
>KOG2203|consensus
Probab=96.44 E-value=0.0023 Score=68.22 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=24.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQ 122 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~ 122 (468)
+|+|+|+.|+|||||+|.|.|.++..
T Consensus 39 VVavmG~QSSGKSTLLN~LFgTnF~~ 64 (772)
T KOG2203|consen 39 VVAVMGSQSSGKSTLLNHLFGTNFRE 64 (772)
T ss_pred EEEEecCcccchHHHHHHHhccChHH
Confidence 79999999999999999999988753
No 407
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.41 E-value=0.019 Score=48.80 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=38.6
Q ss_pred ceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC----CCcEEEEEeC
Q psy13475 185 KINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR----EYQTRIILNK 256 (468)
Q Consensus 185 ~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~----~~~iiiVlNK 256 (468)
.+++||||+.... .....+..+|.++++++++...+ ....++++.+... ..++.+|+|+
T Consensus 44 D~IIiDtpp~~~~------------~~~~~l~~aD~vlvvv~~~~~s~-~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE------------VSLAALDQADRVFLVTQQDLPSI-RNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH------------HHHHHHHHcCeEEEEecCChHHH-HHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7999999986542 13345788999999999876321 2233444444332 3578889986
No 408
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.40 E-value=0.0059 Score=55.25 Aligned_cols=46 Identities=33% Similarity=0.413 Sum_probs=33.4
Q ss_pred CEEEEEEcCCCCCCCHhHHHHH-HHHhcCCCcEEEEEeCCCCCChHHH
Q psy13475 219 DIIFLVYDPSKLDVGPETEAIL-DQLKGREYQTRIILNKADQVKPEEL 265 (468)
Q Consensus 219 DlIllV~Da~~~~i~~e~~~ll-~~l~~~~~~iiiVlNK~D~v~~~el 265 (468)
|++++|+|+... .+.....+. ..+...+.|+++|+||+|+++.+++
T Consensus 1 Dvvl~VvD~~~p-~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~ 47 (155)
T cd01849 1 DVILEVLDARDP-LGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVL 47 (155)
T ss_pred CEEEEEEeccCC-ccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHH
Confidence 789999999763 344333444 4555667899999999999876544
No 409
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.29 E-value=0.0057 Score=60.58 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=20.7
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+|.|+|++.+|||.|+|.|+|.
T Consensus 23 vvsi~G~~rtGKSfLln~l~~~ 44 (260)
T PF02263_consen 23 VVSIVGPYRTGKSFLLNQLLGP 44 (260)
T ss_dssp EEEEEEETTSSHHHHHHHHCCB
T ss_pred EEEeecCCccchHHHHHHHhcc
Confidence 5999999999999999999985
No 410
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.28 E-value=0.015 Score=53.64 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=47.9
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||.... .+...+..||.+++++.++... -.....+++.++..+.++.+|+||+|...
T Consensus 93 ~d~viiDtpp~~~~------------~~~~~l~~aD~vliv~~~~~~~-~~~~~~~~~~l~~~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 93 AELIIIDGPPGIGC------------PVIASLTGADAALLVTEPTPSG-LHDLERAVELVRHFGIPVGVVINKYDLND 157 (179)
T ss_pred CCEEEEECcCCCcH------------HHHHHHHcCCEEEEEecCCccc-HHHHHHHHHHHHHcCCCEEEEEeCCCCCc
Confidence 67999999965431 1334567899999999998642 23455677777776778899999999754
No 411
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.26 E-value=0.004 Score=48.05 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=21.1
Q ss_pred cccCCC-EEEEeccCCCChhhHHHHHh
Q psy13475 91 EIFSKP-LVLFMGPWSGGKSSIINYLL 116 (468)
Q Consensus 91 ~~~~~p-~V~ivG~~n~GKSTLIN~Ll 116 (468)
++...+ ..+|.|+.++||||++.++.
T Consensus 18 ~~~~~g~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 18 DFDPRGDVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred eecCCCcEEEEECCCCCCHHHHHHHHH
Confidence 344443 89999999999999999874
No 412
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.026 Score=66.24 Aligned_cols=128 Identities=19% Similarity=0.253 Sum_probs=68.3
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
..|--+|||++|+||||++.- .|.+++....- |..... +..|+
T Consensus 124 eLPWy~viG~pgsGKTtal~~-sgl~Fpl~~~~-~~~~~~--------------------------------~~gT~--- 166 (1188)
T COG3523 124 ELPWYMVIGPPGSGKTTALLN-SGLQFPLAEQM-GALGLA--------------------------------GPGTR--- 166 (1188)
T ss_pred cCCceEEecCCCCCcchHHhc-ccccCcchhhh-cccccc--------------------------------CCCCc---
Confidence 456788999999999998876 45555532111 000000 01122
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhh---hhhhcc--chhHHHHHh--hcccCEEEEEEcCCCCCCC-HhHH-HHHH---
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRK---QVERQF--PFNDACQWF--IDRADIIFLVYDPSKLDVG-PETE-AILD--- 241 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~---~~~r~~--d~~~~~~~~--~~~aDlIllV~Da~~~~i~-~e~~-~ll~--- 241 (468)
.|.--....-++|||.|-..... +.++.- -|.+..+.. .+-.|.|++.+|.+.+... +... ....
T Consensus 167 ---~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR 243 (1188)
T COG3523 167 ---NCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLR 243 (1188)
T ss_pred ---ccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHH
Confidence 11122235689999999653321 111110 011122222 3466999999998764322 2222 1121
Q ss_pred ----HHh---cCCCcEEEEEeCCCCCC
Q psy13475 242 ----QLK---GREYQTRIILNKADQVK 261 (468)
Q Consensus 242 ----~l~---~~~~~iiiVlNK~D~v~ 261 (468)
.+. +...|+.+++||+|++.
T Consensus 244 ~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 244 ARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHhhccCCceEEEEecccccc
Confidence 222 23479999999999985
No 413
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.23 E-value=0.0035 Score=58.68 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=24.7
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCccc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYS 121 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~ 121 (468)
+.-.|+|+|++|+|||||+|.+.|-..+
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCC
Confidence 4447999999999999999999997765
No 414
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.068 Score=49.17 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=32.6
Q ss_pred HHHHHhhcccCEEEEEEcCCC-C-CCCHhHHHHHHHHhcCCCcEEEEEeCCCC
Q psy13475 209 DACQWFIDRADIIFLVYDPSK-L-DVGPETEAILDQLKGREYQTRIILNKADQ 259 (468)
Q Consensus 209 ~~~~~~~~~aDlIllV~Da~~-~-~i~~e~~~ll~~l~~~~~~iiiVlNK~D~ 259 (468)
...+.+.+.||+|++ |--. + -.+..+.+.++.+-+.+.|++.++-+-+.
T Consensus 92 ~al~rA~~~aDvIII--DEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 92 PALRRALEEADVIII--DEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred HHHHHHhhcCCEEEE--ecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 445556677897764 4211 1 14567778888877788899999887654
No 415
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.15 E-value=0.0037 Score=54.87 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.9
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
.-.++|+|+.|+|||||+++|.|...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 34799999999999999999999744
No 416
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.05 E-value=0.021 Score=53.33 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=36.2
Q ss_pred hhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 207 FNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 207 ~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
|......+++++|+|++|+|+.... ......+.. ...+.|+++|+||+|+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~-~~~~~~l~~--~~~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFP-GSLIPRLRL--FGGNNPVILVGNKIDLLPK 76 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCC-CccchhHHH--hcCCCcEEEEEEchhcCCC
Confidence 3455667789999999999997632 222222211 2235799999999999754
No 417
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.05 E-value=0.0052 Score=59.56 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=22.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCccc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYS 121 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~ 121 (468)
+|+|+|++|+|||||+|.|-|-+-+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 7999999999999999999886553
No 418
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.03 E-value=0.0043 Score=60.61 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCccc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYS 121 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~ 121 (468)
+|+|+|++|+|||||+|.+.|-.-+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 7999999999999999999997654
No 419
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.02 E-value=0.032 Score=46.63 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=26.5
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKL 230 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~ 230 (468)
..+++||||+..+. .....+..+|.++++++++..
T Consensus 40 ~d~viiD~p~~~~~------------~~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGL------------LTRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCH------------HHHHHHHHCCEEEEeccCCHH
Confidence 67999999997643 133457789999999998753
No 420
>PRK12289 GTPase RsgA; Reviewed
Probab=95.96 E-value=0.013 Score=60.72 Aligned_cols=55 Identities=27% Similarity=0.340 Sum_probs=40.1
Q ss_pred HHHhhcccCEEEEEEcCCCCCCCH-hHHHHHHHHhcCCCcEEEEEeCCCCCChHHH
Q psy13475 211 CQWFIDRADIIFLVYDPSKLDVGP-ETEAILDQLKGREYQTRIILNKADQVKPEEL 265 (468)
Q Consensus 211 ~~~~~~~aDlIllV~Da~~~~i~~-e~~~ll~~l~~~~~~iiiVlNK~D~v~~~el 265 (468)
.+..+.++|.|++|+|+....+.. ...+++..+...+.|+++|+||+|+++.+++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~ 138 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQ 138 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHH
Confidence 344588999999999997644444 2345555555567899999999999876543
No 421
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.94 E-value=0.005 Score=58.34 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=22.0
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+|.|+|+|++|+||||++++|++.
T Consensus 1 ~GlilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999875
No 422
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.94 E-value=0.064 Score=48.06 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=21.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.++|+|+.|+|||||+|.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 69999999999999999999963
No 423
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=95.90 E-value=0.0092 Score=67.57 Aligned_cols=87 Identities=15% Similarity=0.342 Sum_probs=50.2
Q ss_pred eccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEeecCC
Q psy13475 101 MGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQLPH 180 (468)
Q Consensus 101 vG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~~~~ 180 (468)
+|..|+|||||+|+|.|..+..... .|..-||..+ .++ +.....
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~-~~r~qtt~gi---------------~~~-----------------~~~~~~--- 44 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDE-SGRQQTTKGI---------------WMA-----------------KAKEVE--- 44 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCcccccc-ccccccchhh---------------HHH-----------------hccccc---
Confidence 5999999999999999998864222 2222222211 000 000010
Q ss_pred CCCcceEEEeCCCCchhhhhhhhccchh-HHHHHhhcccCEEEEEE
Q psy13475 181 PLLEKINIVEIPGILEIRKQVERQFPFN-DACQWFIDRADIIFLVY 225 (468)
Q Consensus 181 ~~l~~i~lIDTPGi~~~~~~~~r~~d~~-~~~~~~~~~aDlIllV~ 225 (468)
.....+.++|+-|..+.+.--+.. |. +.+...+.-+|++|+=+
T Consensus 45 ~~~~~~~v~d~eg~d~~er~~~~~--fe~~~alf~la~s~~~iiN~ 88 (742)
T PF05879_consen 45 SSESNILVLDVEGTDGRERGEDQD--FERKSALFALAVSDVLIINM 88 (742)
T ss_pred cCCCceEEEeCCCCCchhhccccc--hHHHHHHHHHHhhhheeeeh
Confidence 112568999999988754322222 43 33455677888877644
No 424
>KOG4181|consensus
Probab=95.89 E-value=0.077 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
+|.++|..|+|||||+|.|.++.
T Consensus 190 VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 190 VIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred EEEeecCCCccHHHHHHHHhccC
Confidence 69999999999999999998873
No 425
>KOG1533|consensus
Probab=95.88 E-value=0.0032 Score=60.93 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=38.7
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCE---EEEEEcCCCCCCCHhHH-HH---HHHHhcCCCcEEEEEeC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADI---IFLVYDPSKLDVGPETE-AI---LDQLKGREYQTRIILNK 256 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDl---IllV~Da~~~~i~~e~~-~l---l~~l~~~~~~iiiVlNK 256 (468)
....++|.||..+--...+. ..++.+. +++.|. ++-++|++-..-...+. .+ +..+...+.|-+=|+.|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~---l~~I~~~-Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK 172 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDS---LNKIFRK-LEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSK 172 (290)
T ss_pred CcEEEEeCCCcEEEEeccch---HHHHHHH-HHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhH
Confidence 57899999998754221111 1222222 333443 34456654321011111 12 22334556788899999
Q ss_pred CCCCCh
Q psy13475 257 ADQVKP 262 (468)
Q Consensus 257 ~D~v~~ 262 (468)
+|+...
T Consensus 173 ~Dl~~~ 178 (290)
T KOG1533|consen 173 ADLLKK 178 (290)
T ss_pred hHHHHh
Confidence 997643
No 426
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.015 Score=62.90 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
.++++|++|+|||||+|.|+|.--
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC
Confidence 599999999999999999999743
No 427
>KOG0463|consensus
Probab=95.84 E-value=0.029 Score=57.61 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=42.1
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCChH
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKPE 263 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~~ 263 (468)
.-|+|||..|...--+. ..|-+ .-.-.|...+++-+.. ++-...++-+........|+++|++|+|+....
T Consensus 219 KviTFIDLAGHEkYLKT--TvFGM------TGH~PDf~MLMiGaNa-GIiGmTKEHLgLALaL~VPVfvVVTKIDMCPAN 289 (641)
T KOG0463|consen 219 KVITFIDLAGHEKYLKT--TVFGM------TGHMPDFTMLMIGANA-GIIGMTKEHLGLALALHVPVFVVVTKIDMCPAN 289 (641)
T ss_pred eeEEEEeccchhhhhhe--eeecc------ccCCCCceEEEecccc-cceeccHHhhhhhhhhcCcEEEEEEeeccCcHH
Confidence 45999999997543221 11001 1234577788887765 433333333332233468999999999998654
No 428
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.76 E-value=0.0082 Score=57.63 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=23.1
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
+.-.|+|+|++|+||||||++|-+-+-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 344799999999999999999988654
No 429
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.71 E-value=0.069 Score=48.97 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-.++|+|+.|+|||||++.|.|..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999963
No 430
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.69 E-value=0.027 Score=62.07 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-.++|+|++|+|||||++.|+|.-
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 359999999999999999999964
No 431
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.66 E-value=0.0084 Score=56.11 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.8
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
...++|+|++|+|||||+++|++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 447999999999999999999985
No 432
>KOG3887|consensus
Probab=95.57 E-value=0.094 Score=51.15 Aligned_cols=72 Identities=11% Similarity=0.278 Sum_probs=43.9
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh-----cCCCcEEEEEeCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK-----GREYQTRIILNKAD 258 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~-----~~~~~iiiVlNK~D 258 (468)
.++.+||-||..+.- +..||+..+ ...+.+.++|+|+.. +.-+...++...+. +-+..+=+.+.|+|
T Consensus 75 inf~v~dfPGQ~~~F---d~s~D~e~i----F~~~gALifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvD 146 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFF---DPSFDYEMI----FRGVGALIFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVD 146 (347)
T ss_pred cceEEeecCCccccC---CCccCHHHH----HhccCeEEEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEecc
Confidence 568899999987653 223444332 577899999999864 22222222222222 12346677899999
Q ss_pred CCChH
Q psy13475 259 QVKPE 263 (468)
Q Consensus 259 ~v~~~ 263 (468)
.++.+
T Consensus 147 GLsdd 151 (347)
T KOG3887|consen 147 GLSDD 151 (347)
T ss_pred CCchh
Confidence 88643
No 433
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.0092 Score=56.65 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=22.1
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
+.++++|+.|+|||||++.|.|..
T Consensus 26 g~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 26 GMYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CcEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999963
No 434
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.50 E-value=0.0098 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999775
No 435
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.49 E-value=0.011 Score=56.46 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=22.7
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
....++++|+.|+|||||++.|.|..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33479999999999999999999963
No 436
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.46 E-value=0.011 Score=56.12 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
+++|+|+.|+|||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999963
No 437
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.45 E-value=0.009 Score=53.65 Aligned_cols=23 Identities=35% Similarity=0.762 Sum_probs=20.0
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
|.|+|+|+.|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999888764
No 438
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.44 E-value=0.045 Score=41.52 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=26.1
Q ss_pred hcccCEEEEEEcCCCC-CCCH-hHHHHHHHHhcC--CCcEEEEEeCCC
Q psy13475 215 IDRADIIFLVYDPSKL-DVGP-ETEAILDQLKGR--EYQTRIILNKAD 258 (468)
Q Consensus 215 ~~~aDlIllV~Da~~~-~i~~-e~~~ll~~l~~~--~~~iiiVlNK~D 258 (468)
..-.++|+|++|++.. +.+- +-..+++.++.. +.|+++|+||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4567999999999763 2332 233566777654 589999999998
No 439
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.43 E-value=0.011 Score=57.09 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=21.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-+++|+|+.|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999963
No 440
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=95.42 E-value=0.015 Score=64.20 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-.|+|+|++|+|||||++.|+|.-
T Consensus 368 e~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 359999999999999999999964
No 441
>KOG0054|consensus
Probab=95.40 E-value=0.019 Score=68.19 Aligned_cols=26 Identities=38% Similarity=0.594 Sum_probs=23.0
Q ss_pred CCC-EEEEeccCCCChhhHHHHHhCCc
Q psy13475 94 SKP-LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 94 ~~p-~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
++| .|+|+|++|+|||||+.+++|+=
T Consensus 545 ~~G~lvaVvG~vGsGKSSLL~AiLGEm 571 (1381)
T KOG0054|consen 545 KKGQLVAVVGPVGSGKSSLLSAILGEM 571 (1381)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 444 59999999999999999999974
No 442
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.37 E-value=0.012 Score=56.05 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.3
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-.++|+|+.|+|||||++.|.|..
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3379999999999999999999963
No 443
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.37 E-value=0.012 Score=54.29 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=21.7
Q ss_pred CCCEEEEeccCCCChhhHHHHHhC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg 117 (468)
+.+.|+|+|++||||||+.+.|..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 444
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=95.34 E-value=0.042 Score=46.57 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=20.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
.|+++|..|+|||+|+..+....+
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~ 25 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPF 25 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCc
Confidence 488999999999999999855433
No 445
>KOG2484|consensus
Probab=95.32 E-value=0.037 Score=57.35 Aligned_cols=62 Identities=23% Similarity=0.352 Sum_probs=44.6
Q ss_pred hhHHHHHhhcccCEEEEEEcCCCCCCCH---hHHHHHHHHhcCCCcEEEEEeCCCCCChHHHHHHhh
Q psy13475 207 FNDACQWFIDRADIIFLVYDPSKLDVGP---ETEAILDQLKGREYQTRIILNKADQVKPEELMRVQG 270 (468)
Q Consensus 207 ~~~~~~~~~~~aDlIllV~Da~~~~i~~---e~~~ll~~l~~~~~~iiiVlNK~D~v~~~el~~v~~ 270 (468)
+.+..+..++.+|+||.|+||.. +.+. +..+.+-+..+ +.+.|+||||+|++..+.+..+..
T Consensus 136 Y~ke~rkvve~sDVVleVlDARD-PlgtR~~~vE~~V~~~~g-nKkLILVLNK~DLVPrEv~e~Wl~ 200 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARD-PLGTRCPEVEEAVLQAHG-NKKLILVLNKIDLVPREVVEKWLV 200 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccC-CCCCCChhHHHHHHhccC-CceEEEEeehhccCCHHHHHHHHH
Confidence 34556777899999999999987 4443 34444433333 379999999999998887766543
No 446
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.31 E-value=0.012 Score=60.40 Aligned_cols=24 Identities=29% Similarity=0.557 Sum_probs=22.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
+++++|++|+|||||+|.+.|-+-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 799999999999999999998654
No 447
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.31 E-value=0.013 Score=55.65 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=21.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-.++|+|+.|+|||||++.|.|..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999963
No 448
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.30 E-value=0.013 Score=55.41 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-.++|+|+.|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3379999999999999999999963
No 449
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.29 E-value=0.014 Score=55.92 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
-.++|+|+.|+|||||++.|.|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999996
No 450
>KOG0096|consensus
Probab=95.29 E-value=0.062 Score=50.48 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCccc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYS 121 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~ 121 (468)
.++++|.-+.||+|+++..+-.++.
T Consensus 12 klvlvGdgg~gKtt~vkr~ltgeFe 36 (216)
T KOG0096|consen 12 KLVLVGDGGTGKTTFVKRHLTGEFE 36 (216)
T ss_pred EEEEecCCcccccchhhhhhcccce
Confidence 3889999999999999998877664
No 451
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.28 E-value=0.014 Score=56.78 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.8
Q ss_pred CEEEEeccCCCChhhHHHHHhC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg 117 (468)
-+|+|+|++|+|||||+++|.|
T Consensus 31 E~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhc
Confidence 3899999999999999999988
No 452
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.28 E-value=0.014 Score=54.52 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=21.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.++|+|+.|+|||||++.|.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999963
No 453
>KOG1707|consensus
Probab=95.26 E-value=0.091 Score=56.86 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=22.7
Q ss_pred EEEeccCCCChhhHHHHHhCCccc
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYS 121 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~ 121 (468)
..++|+.++|||.|+++++|+.+.
T Consensus 428 C~V~G~k~~GKs~lL~sflgr~~~ 451 (625)
T KOG1707|consen 428 CFVVGPKNCGKSALLQSFLGRSMS 451 (625)
T ss_pred EEEEcCCcCchHHHHHHHhccccc
Confidence 889999999999999999999875
No 454
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.25 E-value=0.014 Score=55.76 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.7
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
..-.++|+|+.|+|||||++.|.|..
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33479999999999999999999973
No 455
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.24 E-value=0.014 Score=56.14 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.4
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-+++|+|+.|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3379999999999999999999974
No 456
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.24 E-value=0.013 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.6
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+|+++|+||+|||||+..|...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999753
No 457
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.22 E-value=0.014 Score=55.62 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=21.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.++|+|+.|+|||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999963
No 458
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21 E-value=0.015 Score=55.30 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=21.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.++|+|+.|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999963
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.21 E-value=0.017 Score=49.09 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.5
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
..++++|++|+||||++..|++.-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 469999999999999999998763
No 460
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.19 E-value=0.015 Score=54.82 Aligned_cols=26 Identities=15% Similarity=0.288 Sum_probs=22.8
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
+.-.++|+|+.|+|||||++.|.|..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34479999999999999999999964
No 461
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.18 E-value=0.014 Score=55.99 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=22.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
+++|+|+.|+|||||+..|.|+--
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccC
Confidence 799999999999999999999743
No 462
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.18 E-value=0.015 Score=55.15 Aligned_cols=24 Identities=29% Similarity=0.694 Sum_probs=21.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-.++|+|+.|+|||||++.|.|..
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999999963
No 463
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.17 E-value=0.015 Score=56.35 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-+++|+|+.|+|||||++.|.|..
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999963
No 464
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.16 E-value=0.015 Score=55.57 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=22.3
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-.++++|+.|+|||||++.|+|..
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3379999999999999999999964
No 465
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.16 E-value=0.014 Score=57.51 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=21.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
-+++|+|+.|+|||||+.+++|-
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999994
No 466
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.16 E-value=0.013 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=20.3
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+++|+|++|||||||+++|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999775
No 467
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.15 E-value=0.015 Score=55.62 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.++|+|+.|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
No 468
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.14 E-value=0.015 Score=54.39 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=20.3
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+|+|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999775
No 469
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.14 E-value=0.016 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-.++++|+.|+|||||++.|.|..
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999963
No 470
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.14 E-value=0.016 Score=54.74 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=21.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.++|+|+.|+|||||++.|.|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999963
No 471
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.13 E-value=0.016 Score=54.12 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=20.0
Q ss_pred CEEEEeccCCCChhhHHHHHhC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg 117 (468)
-+++|+|+.|+|||||+|.+++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3799999999999999999974
No 472
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.13 E-value=0.015 Score=55.57 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.++|+|+.|+|||||++.|.|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999963
No 473
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.10 E-value=0.016 Score=55.10 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-+++|+|+.|+|||||++.|.|..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 379999999999999999999963
No 474
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.10 E-value=0.014 Score=54.43 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+.+++.|+|.+|+|||||++.|++.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5668999999999999999999875
No 475
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.09 E-value=0.017 Score=55.41 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=22.0
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-+++|+|+.|+|||||++.|.|..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999963
No 476
>KOG0781|consensus
Probab=95.08 E-value=0.051 Score=57.56 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=43.9
Q ss_pred CcceEEEeCCCCchhhhhhhhccchhHHHHHh--hcccCEEEEEEcCCCC-CCCHhHHHHHHHHhcCCCcE---EEEEeC
Q psy13475 183 LEKINIVEIPGILEIRKQVERQFPFNDACQWF--IDRADIIFLVYDPSKL-DVGPETEAILDQLKGREYQT---RIILNK 256 (468)
Q Consensus 183 l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~--~~~aDlIllV~Da~~~-~i~~e~~~ll~~l~~~~~~i---iiVlNK 256 (468)
...|++|||+|-......+-+. ...+ +.+.|.||+|=.|--. +.-++...+-+.+..+..|- -|+++|
T Consensus 466 gfDVvLiDTAGR~~~~~~lm~~------l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk 539 (587)
T KOG0781|consen 466 GFDVVLIDTAGRMHNNAPLMTS------LAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTK 539 (587)
T ss_pred CCCEEEEeccccccCChhHHHH------HHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEe
Confidence 3679999999976543332221 2222 4688999999776331 11122334445565554332 469999
Q ss_pred CCCCCh
Q psy13475 257 ADQVKP 262 (468)
Q Consensus 257 ~D~v~~ 262 (468)
+|.++.
T Consensus 540 ~dtv~d 545 (587)
T KOG0781|consen 540 FDTVDD 545 (587)
T ss_pred ccchhh
Confidence 998853
No 477
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.08 E-value=0.017 Score=54.33 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-.++|+|+.|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3379999999999999999999963
No 478
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.017 Score=54.74 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
+++|+|+.|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999963
No 479
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.06 E-value=0.017 Score=55.57 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-.++|+|+.|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999963
No 480
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.05 E-value=0.053 Score=61.15 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=21.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.|+|+|++|+|||||++.|+|--
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 69999999999999999999963
No 481
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.04 E-value=0.018 Score=53.62 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
....++++|+.|+|||||++.|.|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33479999999999999999999974
No 482
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.04 E-value=0.018 Score=52.67 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-.++++|+.|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999964
No 483
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.04 E-value=0.018 Score=54.58 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-.++|+|+.|+|||||++.|.|..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3369999999999999999999964
No 484
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03 E-value=0.018 Score=55.54 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.++|+|+.|+|||||++.|.|.-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999963
No 485
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.02 E-value=0.012 Score=53.67 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=18.2
Q ss_pred EEEeccCCCChhhHHHHHhCCc
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
|+|+|.+|+|||||++.|....
T Consensus 2 I~i~G~~stGKTTL~~~L~~~g 23 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAARG 23 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHcC
Confidence 8999999999999999998763
No 486
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.01 E-value=0.017 Score=56.50 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
-+++|+|+.|+|||||++.|.|.
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37999999999999999999995
No 487
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.00 E-value=0.018 Score=55.62 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.++|+|+.|+|||||++.|.|..
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999963
No 488
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.00 E-value=0.018 Score=55.56 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=22.0
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-.++|+|+.|+|||||++.|.|..
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999964
No 489
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.99 E-value=0.019 Score=54.00 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=22.0
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-.++|+|+.|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999964
No 490
>KOG2749|consensus
Probab=94.99 E-value=0.09 Score=53.89 Aligned_cols=51 Identities=29% Similarity=0.494 Sum_probs=36.7
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQ 152 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~ 152 (468)
..|.|++||+.++|||||...|++.-+ +.|-.|+ |+.+.-|...-++||..
T Consensus 102 ~GPrv~vVGp~d~GKsTl~r~L~nyav-----k~gr~Pl---fv~LDvgQ~sitiPGsi 152 (415)
T KOG2749|consen 102 YGPRVMVVGPTDVGKSTLCRILLNYAV-----KQGRRPL---FVELDVGQGSITIPGSI 152 (415)
T ss_pred cCCEEEEECCCccchHHHHHHHHHHHH-----HcCCcce---EEEcCCCCCceecccch
Confidence 578999999999999999999987533 2333342 55555566666778764
No 491
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.019 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=21.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
-.++|+|+.|+|||||++.|.|.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999996
No 492
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.99 E-value=0.019 Score=55.25 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=22.8
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
+.-+++|+|+.|+|||||++.|.|..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 33479999999999999999999963
No 493
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=94.98 E-value=0.1 Score=51.75 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=52.9
Q ss_pred ceEEEeCC-CCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCChH
Q psy13475 185 KINIVEIP-GILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKPE 263 (468)
Q Consensus 185 ~i~lIDTP-Gi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~~ 263 (468)
.+.+|||| |++-+ .-..+..+|++++|..++..++. ..+++++.++..+.|..+|+||.+.-+.
T Consensus 165 ~~~IIDsaaG~gCp-------------Vi~sl~~aD~ai~VTEPTp~glh-D~kr~~el~~~f~ip~~iViNr~~~g~s- 229 (284)
T COG1149 165 DLLIIDSAAGTGCP-------------VIASLKGADLAILVTEPTPFGLH-DLKRALELVEHFGIPTGIVINRYNLGDS- 229 (284)
T ss_pred ceeEEecCCCCCCh-------------HHHhhccCCEEEEEecCCccchh-HHHHHHHHHHHhCCceEEEEecCCCCch-
Confidence 68999996 66543 23347899999999999876543 4667888888889999999999976655
Q ss_pred HHHHH
Q psy13475 264 ELMRV 268 (468)
Q Consensus 264 el~~v 268 (468)
++.+.
T Consensus 230 ~ie~~ 234 (284)
T COG1149 230 EIEEY 234 (284)
T ss_pred HHHHH
Confidence 55554
No 494
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.98 E-value=0.018 Score=55.63 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=21.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
+++|+|+.|+|||||++.|.|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 69999999999999999999963
No 495
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.98 E-value=0.019 Score=54.52 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=21.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.++++|+.|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999963
No 496
>PRK10908 cell division protein FtsE; Provisional
Probab=94.97 E-value=0.019 Score=54.96 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.7
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
..-.++|+|+.|+|||||++.|.|..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33479999999999999999999963
No 497
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.97 E-value=0.02 Score=53.17 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.3
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-.++++|+.|+|||||++.|.|..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3379999999999999999999963
No 498
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=94.95 E-value=0.035 Score=54.75 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=44.2
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHH---hh--cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcE-EEEEeCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQW---FI--DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQT-RIILNKA 257 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~---~~--~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~i-iiVlNK~ 257 (468)
..+++||||.....-.- ..+.+...| .+ ...+.+++|+.+.... -.+..+.++.+...+.++ -+|+|++
T Consensus 125 yD~VVvDtpPtg~tlrl----L~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~-~~e~~r~~~~L~~~g~~v~gvV~N~v 199 (254)
T cd00550 125 YDVVVFDTAPTGHTLRL----LSLPTVLSWAREILSDPERTSFRLVCIPEKMS-LYETERAIQELAKYGIDVDAVIVNQL 199 (254)
T ss_pred CCEEEECCCCcHHHHHH----HHhHHHHHHHHHHhcCCcceEEEEEeCCChhH-HHHHHHHHHHHHHCCCCCCEEEEecC
Confidence 67999999986543211 112222222 22 2346788888887632 345667788888777664 7799998
Q ss_pred CCC
Q psy13475 258 DQV 260 (468)
Q Consensus 258 D~v 260 (468)
...
T Consensus 200 ~~~ 202 (254)
T cd00550 200 LPE 202 (254)
T ss_pred ccc
Confidence 753
No 499
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.019 Score=55.48 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
+++|+|+.|+|||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 79999999999999999999963
No 500
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.94 E-value=0.019 Score=56.50 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=22.3
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-.++|+|+.|+|||||++.|.|..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3379999999999999999999964
Done!