Query psy13475
Match_columns 468
No_of_seqs 560 out of 3320
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 20:21:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qpt_A EH domain-containing pr 100.0 1.4E-54 4.8E-59 467.5 21.9 379 53-450 23-408 (550)
2 3iev_A GTP-binding protein ERA 100.0 2.2E-29 7.6E-34 252.5 8.4 230 94-375 9-270 (308)
3 1wf3_A GTP-binding protein; GT 99.9 1.4E-28 4.6E-33 246.2 8.5 229 93-376 5-261 (301)
4 1ega_A Protein (GTP-binding pr 99.9 3.7E-26 1.3E-30 228.4 5.0 227 94-376 7-262 (301)
5 3gee_A MNME, tRNA modification 99.8 1.3E-20 4.5E-25 199.5 9.2 192 9-264 154-360 (476)
6 3geh_A MNME, tRNA modification 99.8 1.4E-19 4.9E-24 190.9 8.4 192 9-264 146-347 (462)
7 1xzp_A Probable tRNA modificat 99.8 7E-19 2.4E-23 186.5 12.8 186 10-261 167-364 (482)
8 3zvr_A Dynamin-1; hydrolase, D 99.7 3.6E-17 1.2E-21 180.8 16.7 230 92-331 48-336 (772)
9 2j69_A Bacterial dynamin-like 99.7 3.7E-17 1.3E-21 180.6 11.4 153 97-262 71-245 (695)
10 4dhe_A Probable GTP-binding pr 99.7 2.1E-16 7.1E-21 148.5 11.4 132 94-268 28-165 (223)
11 1jwy_B Dynamin A GTPase domain 99.7 2.2E-16 7.5E-21 157.0 11.5 161 94-263 23-214 (315)
12 1mky_A Probable GTP-binding pr 99.6 4.4E-16 1.5E-20 163.0 11.8 122 96-261 2-124 (439)
13 2hjg_A GTP-binding protein ENG 99.6 5.8E-16 2E-20 162.0 11.6 124 95-262 3-126 (436)
14 1svi_A GTP-binding protein YSX 99.6 3.4E-15 1.2E-19 136.8 15.1 128 94-267 22-154 (195)
15 3t34_A Dynamin-related protein 99.6 1.1E-15 3.8E-20 155.8 12.4 165 93-263 32-219 (360)
16 4dcu_A GTP-binding protein ENG 99.6 7.6E-16 2.6E-20 162.0 11.3 127 92-262 20-146 (456)
17 3pqc_A Probable GTP-binding pr 99.6 3.5E-15 1.2E-19 136.1 14.1 129 93-266 21-152 (195)
18 2aka_B Dynamin-1; fusion prote 99.6 3E-15 1E-19 147.4 14.2 160 94-263 25-208 (299)
19 3iby_A Ferrous iron transport 99.6 1.9E-15 6.5E-20 147.3 9.4 122 96-262 2-125 (256)
20 2dyk_A GTP-binding protein; GT 99.6 3.8E-15 1.3E-19 131.7 10.0 121 96-262 2-123 (161)
21 3lxw_A GTPase IMAP family memb 99.6 3.2E-15 1.1E-19 144.7 10.2 121 97-261 23-153 (247)
22 2gj8_A MNME, tRNA modification 99.6 2.9E-15 9.8E-20 136.2 9.0 120 97-260 6-128 (172)
23 3i8s_A Ferrous iron transport 99.6 3.5E-15 1.2E-19 146.7 8.8 122 95-262 3-127 (274)
24 2hjg_A GTP-binding protein ENG 99.6 7.3E-15 2.5E-19 153.7 10.7 125 95-262 175-301 (436)
25 2qu8_A Putative nucleolar GTP- 99.6 9.2E-14 3.1E-18 131.7 17.0 128 94-264 28-159 (228)
26 2xtp_A GTPase IMAP family memb 99.5 1.1E-14 3.6E-19 141.1 10.2 125 95-261 22-153 (260)
27 4bas_A ADP-ribosylation factor 99.5 2.2E-14 7.5E-19 131.7 11.2 116 94-262 16-142 (199)
28 3t5d_A Septin-7; GTP-binding p 99.5 3.9E-14 1.3E-18 138.8 13.3 139 97-268 10-165 (274)
29 1upt_A ARL1, ADP-ribosylation 99.5 6.6E-14 2.3E-18 124.9 13.4 113 95-262 7-123 (171)
30 3a1s_A Iron(II) transport prot 99.5 2E-14 6.9E-19 140.2 10.8 117 96-261 6-124 (258)
31 3clv_A RAB5 protein, putative; 99.5 3.4E-14 1.2E-18 129.8 11.2 146 97-258 9-158 (208)
32 2x2e_A Dynamin-1; nitration, h 99.5 3.3E-14 1.1E-18 144.6 12.0 159 94-262 30-212 (353)
33 2g6b_A RAS-related protein RAB 99.5 2.5E-14 8.7E-19 129.0 9.9 117 97-262 12-131 (180)
34 3lxx_A GTPase IMAP family memb 99.5 2E-14 6.7E-19 137.6 9.6 127 96-266 30-164 (239)
35 2lkc_A Translation initiation 99.5 4.1E-14 1.4E-18 127.4 11.1 116 94-262 7-122 (178)
36 3def_A T7I23.11 protein; chlor 99.5 4.8E-14 1.7E-18 137.3 11.5 121 96-261 37-165 (262)
37 4dcu_A GTP-binding protein ENG 99.5 5.8E-14 2E-18 147.6 12.8 125 95-262 195-321 (456)
38 3bc1_A RAS-related protein RAB 99.5 6.3E-14 2.1E-18 127.4 11.4 123 95-261 11-141 (195)
39 2fg5_A RAB-22B, RAS-related pr 99.5 2.6E-14 9E-19 131.5 8.9 116 96-261 24-142 (192)
40 1mky_A Probable GTP-binding pr 99.5 1E-13 3.4E-18 145.1 14.4 126 95-263 180-308 (439)
41 1ek0_A Protein (GTP-binding pr 99.5 3.3E-14 1.1E-18 126.4 9.1 116 97-262 5-123 (170)
42 2gf9_A RAS-related protein RAB 99.5 2.7E-14 9.4E-19 130.7 8.7 118 95-262 22-142 (189)
43 1c1y_A RAS-related protein RAP 99.5 7.3E-14 2.5E-18 124.0 11.0 114 97-262 5-123 (167)
44 1z0f_A RAB14, member RAS oncog 99.5 6.8E-14 2.3E-18 125.6 10.6 116 96-261 16-134 (179)
45 2wji_A Ferrous iron transport 99.5 3.6E-14 1.2E-18 127.6 8.7 115 96-260 4-121 (165)
46 2ce2_X GTPase HRAS; signaling 99.5 6.9E-14 2.4E-18 123.4 9.9 114 97-261 5-122 (166)
47 1u8z_A RAS-related protein RAL 99.5 4.7E-14 1.6E-18 124.9 8.8 114 97-261 6-123 (168)
48 4dsu_A GTPase KRAS, isoform 2B 99.5 6.9E-14 2.4E-18 126.9 10.1 114 97-261 6-123 (189)
49 2efe_B Small GTP-binding prote 99.5 7E-14 2.4E-18 126.2 10.1 116 97-262 14-132 (181)
50 3tkl_A RAS-related protein RAB 99.5 6.4E-14 2.2E-18 128.2 10.0 116 97-262 18-136 (196)
51 1kao_A RAP2A; GTP-binding prot 99.5 4.9E-14 1.7E-18 124.7 8.9 115 97-262 5-123 (167)
52 3tw8_B RAS-related protein RAB 99.5 3.1E-14 1.1E-18 128.0 7.7 117 96-262 10-128 (181)
53 1zbd_A Rabphilin-3A; G protein 99.5 1.2E-13 4.2E-18 127.6 11.9 116 97-262 10-128 (203)
54 1h65_A Chloroplast outer envel 99.5 8.2E-14 2.8E-18 136.2 11.2 124 96-263 40-170 (270)
55 3b1v_A Ferrous iron uptake tra 99.5 4E-14 1.4E-18 139.3 9.0 116 96-261 4-121 (272)
56 3k53_A Ferrous iron transport 99.5 6.3E-14 2.2E-18 137.1 10.4 117 96-261 4-123 (271)
57 2nzj_A GTP-binding protein REM 99.5 1.1E-13 3.7E-18 124.0 11.1 117 97-262 6-126 (175)
58 1g16_A RAS-related protein SEC 99.5 3.9E-14 1.3E-18 126.1 7.6 114 97-260 5-121 (170)
59 2h17_A ADP-ribosylation factor 99.5 1.1E-13 3.9E-18 125.8 10.9 113 94-261 20-136 (181)
60 3oes_A GTPase rhebl1; small GT 99.5 4.5E-14 1.6E-18 130.8 8.3 116 96-262 25-144 (201)
61 1r8s_A ADP-ribosylation factor 99.5 2.3E-13 7.9E-18 120.7 12.5 111 97-262 2-116 (164)
62 1z0j_A RAB-22, RAS-related pro 99.5 9.5E-14 3.3E-18 123.6 9.6 116 97-262 8-126 (170)
63 3q72_A GTP-binding protein RAD 99.5 7.3E-14 2.5E-18 124.2 8.7 114 97-262 4-121 (166)
64 2qtf_A Protein HFLX, GTP-bindi 99.5 1.7E-13 5.8E-18 140.3 12.6 121 95-262 179-307 (364)
65 2erx_A GTP-binding protein DI- 99.5 6.5E-14 2.2E-18 124.7 8.3 115 97-262 5-124 (172)
66 1r2q_A RAS-related protein RAB 99.5 1E-13 3.5E-18 123.2 9.5 115 97-261 8-125 (170)
67 1z2a_A RAS-related protein RAB 99.5 4.1E-14 1.4E-18 125.7 6.9 115 97-261 7-123 (168)
68 2oil_A CATX-8, RAS-related pro 99.5 1E-13 3.4E-18 127.2 9.5 116 96-261 26-144 (193)
69 3cph_A RAS-related protein SEC 99.5 7.6E-14 2.6E-18 129.6 8.5 116 95-260 20-138 (213)
70 1ky3_A GTP-binding protein YPT 99.5 8.1E-14 2.8E-18 125.4 8.3 116 97-261 10-132 (182)
71 1zd9_A ADP-ribosylation factor 99.5 5.7E-13 2E-17 122.0 14.0 112 97-262 24-139 (188)
72 3kkq_A RAS-related protein M-R 99.5 2.4E-13 8.3E-18 123.2 11.3 114 97-261 20-137 (183)
73 2bov_A RAla, RAS-related prote 99.5 1.4E-13 4.8E-18 126.9 9.9 116 96-262 15-134 (206)
74 1z08_A RAS-related protein RAB 99.5 6.6E-14 2.3E-18 124.8 7.4 115 97-261 8-125 (170)
75 2fh5_B SR-beta, signal recogni 99.5 3.5E-13 1.2E-17 125.7 12.6 115 95-262 7-130 (214)
76 2y8e_A RAB-protein 6, GH09086P 99.5 6.2E-14 2.1E-18 125.9 7.1 116 97-262 16-134 (179)
77 1ksh_A ARF-like protein 2; sma 99.5 8.7E-13 3E-17 120.0 14.7 112 96-262 19-134 (186)
78 2e87_A Hypothetical protein PH 99.5 6E-12 2E-16 128.1 22.3 127 94-265 166-298 (357)
79 2hxs_A RAB-26, RAS-related pro 99.5 1E-13 3.5E-18 124.7 8.0 116 97-261 8-129 (178)
80 4a9a_A Ribosome-interacting GT 99.4 2.7E-13 9.3E-18 139.1 11.7 117 97-260 74-195 (376)
81 3t5g_A GTP-binding protein RHE 99.4 7.1E-14 2.4E-18 126.5 6.4 116 96-262 7-126 (181)
82 1zj6_A ADP-ribosylation factor 99.4 4.2E-13 1.4E-17 122.5 11.6 111 96-261 17-131 (187)
83 2gf0_A GTP-binding protein DI- 99.4 1.9E-13 6.5E-18 125.4 9.3 115 96-261 9-128 (199)
84 2a5j_A RAS-related protein RAB 99.4 1.2E-13 4.1E-18 126.8 7.9 115 97-261 23-140 (191)
85 3qq5_A Small GTP-binding prote 99.4 8.7E-14 3E-18 145.1 7.6 123 94-263 33-156 (423)
86 1fzq_A ADP-ribosylation factor 99.4 4.6E-13 1.6E-17 122.2 11.6 113 95-262 16-132 (181)
87 3dz8_A RAS-related protein RAB 99.4 1E-13 3.4E-18 127.3 7.2 117 95-261 23-142 (191)
88 3con_A GTPase NRAS; structural 99.4 2.4E-13 8.3E-18 124.1 9.7 115 96-261 22-140 (190)
89 2h57_A ADP-ribosylation factor 99.4 2.6E-13 8.8E-18 124.3 9.8 116 94-262 20-141 (190)
90 1wms_A RAB-9, RAB9, RAS-relate 99.4 2.7E-13 9.1E-18 121.8 9.8 115 97-261 9-130 (177)
91 2ged_A SR-beta, signal recogni 99.4 1.2E-13 3.9E-18 126.6 7.4 121 94-268 47-177 (193)
92 3q85_A GTP-binding protein REM 99.4 1.3E-13 4.4E-18 123.0 7.5 116 97-261 4-123 (169)
93 1wxq_A GTP-binding protein; st 99.4 5.1E-14 1.7E-18 145.8 5.5 23 97-119 2-24 (397)
94 2fn4_A P23, RAS-related protei 99.4 1.5E-13 5E-18 123.6 7.8 116 96-262 10-129 (181)
95 3r7w_A Gtpase1, GTP-binding pr 99.4 4.3E-13 1.5E-17 133.9 11.9 149 97-292 5-162 (307)
96 1moz_A ARL1, ADP-ribosylation 99.4 1.9E-13 6.6E-18 123.7 8.5 113 95-262 18-134 (183)
97 2bcg_Y Protein YP2, GTP-bindin 99.4 2.1E-13 7.3E-18 126.4 8.8 117 96-262 9-128 (206)
98 2a9k_A RAS-related protein RAL 99.4 1.8E-13 6.3E-18 123.6 8.1 114 96-261 19-137 (187)
99 1z06_A RAS-related protein RAB 99.4 3.3E-13 1.1E-17 123.4 9.9 117 97-262 22-142 (189)
100 1x3s_A RAS-related protein RAB 99.4 3E-13 1E-17 123.5 9.4 116 96-261 16-135 (195)
101 2b6h_A ADP-ribosylation factor 99.4 6.3E-13 2.1E-17 122.6 11.6 111 97-262 31-145 (192)
102 3llu_A RAS-related GTP-binding 99.4 1.5E-12 5.2E-17 120.1 13.7 119 94-263 19-145 (196)
103 2bme_A RAB4A, RAS-related prot 99.4 3.2E-13 1.1E-17 122.5 8.9 116 96-261 11-129 (186)
104 2x77_A ADP-ribosylation factor 99.4 1.8E-12 6.2E-17 118.3 14.0 112 96-262 23-138 (189)
105 2il1_A RAB12; G-protein, GDP, 99.4 3E-13 1E-17 124.5 8.7 116 97-262 28-146 (192)
106 2p5s_A RAS and EF-hand domain 99.4 2.4E-13 8.2E-18 125.7 8.0 115 96-260 29-146 (199)
107 2f7s_A C25KG, RAS-related prot 99.4 2E-13 6.9E-18 127.6 7.6 68 184-261 84-155 (217)
108 2j1l_A RHO-related GTP-binding 99.4 1.3E-13 4.5E-18 129.4 6.3 113 97-264 36-155 (214)
109 1mh1_A RAC1; GTP-binding, GTPa 99.4 1E-13 3.6E-18 125.4 5.3 115 97-262 7-124 (186)
110 4djt_A GTP-binding nuclear pro 99.4 1.7E-13 5.9E-18 128.2 6.9 118 97-263 13-133 (218)
111 2wjg_A FEOB, ferrous iron tran 99.4 4.8E-13 1.6E-17 121.7 9.5 118 95-261 7-126 (188)
112 2hup_A RAS-related protein RAB 99.4 4E-13 1.4E-17 124.9 8.9 116 96-261 30-148 (201)
113 1vg8_A RAS-related protein RAB 99.4 2.6E-13 9E-18 125.4 7.6 115 97-261 10-131 (207)
114 2ew1_A RAS-related protein RAB 99.4 5.8E-13 2E-17 124.3 10.0 116 96-261 27-145 (201)
115 3o47_A ADP-ribosylation factor 99.4 9.9E-13 3.4E-17 132.6 12.2 148 61-263 124-282 (329)
116 2fu5_C RAS-related protein RAB 99.4 1.2E-13 4E-18 125.3 4.9 114 97-261 10-127 (183)
117 2yc2_C IFT27, small RAB-relate 99.4 1.6E-13 5.4E-18 126.6 5.8 116 97-261 22-146 (208)
118 2q3h_A RAS homolog gene family 99.4 2.1E-13 7.2E-18 125.8 6.5 115 96-261 21-138 (201)
119 3reg_A RHO-like small GTPase; 99.4 3E-13 1E-17 124.3 7.2 114 97-261 25-141 (194)
120 2fv8_A H6, RHO-related GTP-bin 99.4 1.9E-13 6.5E-18 127.3 6.0 117 97-264 27-146 (207)
121 1wb1_A Translation elongation 99.4 1.2E-12 4.2E-17 138.6 12.9 127 95-268 19-146 (482)
122 2atv_A RERG, RAS-like estrogen 99.4 7.3E-13 2.5E-17 122.0 9.7 113 97-261 30-146 (196)
123 1m2o_B GTP-binding protein SAR 99.4 1E-12 3.4E-17 121.0 10.2 112 95-261 23-138 (190)
124 3q3j_B RHO-related GTP-binding 99.4 4.3E-13 1.5E-17 126.1 7.8 113 97-261 29-145 (214)
125 2atx_A Small GTP binding prote 99.4 3.9E-13 1.3E-17 123.3 7.3 116 97-263 20-138 (194)
126 3c5c_A RAS-like protein 12; GD 99.4 5.2E-13 1.8E-17 122.5 8.0 113 97-261 23-141 (187)
127 3bwd_D RAC-like GTP-binding pr 99.4 1.5E-13 5.3E-18 124.0 4.3 116 96-262 9-127 (182)
128 3sjy_A Translation initiation 99.4 5.5E-12 1.9E-16 130.5 16.4 98 184-292 75-173 (403)
129 1f6b_A SAR1; gtpases, N-termin 99.4 8.3E-13 2.8E-17 122.5 9.0 112 95-261 25-140 (198)
130 3l0i_B RAS-related protein RAB 99.4 5.9E-14 2E-18 129.9 1.2 116 97-262 35-153 (199)
131 2gco_A H9, RHO-related GTP-bin 99.4 4.2E-13 1.4E-17 124.4 6.8 116 97-263 27-145 (201)
132 3cpj_B GTP-binding protein YPT 99.4 2.8E-13 9.6E-18 127.8 5.6 115 97-261 15-132 (223)
133 3t1o_A Gliding protein MGLA; G 99.4 9.4E-13 3.2E-17 120.0 8.9 68 184-262 74-150 (198)
134 4gzl_A RAS-related C3 botulinu 99.4 3.1E-13 1.1E-17 125.9 5.8 117 97-264 32-151 (204)
135 1nrj_B SR-beta, signal recogni 99.4 2.9E-12 1E-16 119.8 12.2 117 94-262 11-135 (218)
136 2cxx_A Probable GTP-binding pr 99.4 5.3E-12 1.8E-16 114.6 13.6 118 97-262 3-137 (190)
137 3izy_P Translation initiation 99.4 2E-13 6.7E-18 146.2 4.3 116 94-261 3-118 (537)
138 1lnz_A SPO0B-associated GTP-bi 99.4 1.9E-12 6.4E-17 131.5 11.1 123 96-263 159-290 (342)
139 2iwr_A Centaurin gamma 1; ANK 99.4 1.6E-12 5.6E-17 117.1 9.2 107 97-260 9-121 (178)
140 2o52_A RAS-related protein RAB 99.4 3.5E-13 1.2E-17 125.0 4.8 116 96-261 26-144 (200)
141 3cbq_A GTP-binding protein REM 99.4 1.7E-12 5.7E-17 120.3 9.3 118 96-262 24-145 (195)
142 3j2k_7 ERF3, eukaryotic polype 99.3 3.7E-12 1.3E-16 133.4 13.0 67 184-261 95-169 (439)
143 1m7b_A RND3/RHOE small GTP-bin 99.3 1.3E-12 4.6E-17 119.0 7.5 114 97-261 9-125 (184)
144 3izq_1 HBS1P, elongation facto 99.3 4.4E-12 1.5E-16 138.1 12.5 68 184-261 245-319 (611)
145 3p26_A Elongation factor 1 alp 99.3 3.7E-12 1.3E-16 134.8 11.6 68 184-261 111-185 (483)
146 3tr5_A RF-3, peptide chain rel 99.3 3.1E-12 1E-16 137.0 10.7 67 184-261 82-148 (528)
147 2j0v_A RAC-like GTP-binding pr 99.3 6.3E-13 2.1E-17 123.8 4.5 115 97-262 11-128 (212)
148 2c78_A Elongation factor TU-A; 99.3 8.4E-12 2.9E-16 129.1 13.4 67 184-261 75-142 (405)
149 3th5_A RAS-related C3 botulinu 99.0 1.4E-13 4.9E-18 127.6 0.0 115 97-262 32-149 (204)
150 3lvq_E ARF-GAP with SH3 domain 99.3 4E-12 1.4E-16 134.6 10.5 111 97-262 324-438 (497)
151 1gwn_A RHO-related GTP-binding 99.3 2.2E-12 7.5E-17 120.7 7.3 115 96-261 29-146 (205)
152 3gj0_A GTP-binding nuclear pro 99.3 1.3E-12 4.3E-17 122.8 5.6 116 96-262 16-134 (221)
153 3ihw_A Centg3; RAS, centaurin, 99.3 6.9E-12 2.4E-16 114.9 10.1 107 97-260 22-132 (184)
154 1d2e_A Elongation factor TU (E 99.3 9.6E-12 3.3E-16 128.5 12.2 67 184-261 66-133 (397)
155 1zun_B Sulfate adenylate trans 99.3 1.6E-11 5.4E-16 128.3 13.8 67 184-261 104-171 (434)
156 2zej_A Dardarin, leucine-rich 99.3 9.3E-12 3.2E-16 113.6 10.2 124 97-265 4-130 (184)
157 1zo1_I IF2, translation initia 99.3 2.1E-12 7.3E-17 137.1 6.5 115 94-261 3-117 (501)
158 2elf_A Protein translation elo 99.3 2.4E-11 8.3E-16 124.5 14.1 107 97-266 23-131 (370)
159 1pui_A ENGB, probable GTP-bind 99.3 1.6E-11 5.5E-16 113.9 10.9 122 96-264 27-154 (210)
160 4dkx_A RAS-related protein RAB 99.3 1.2E-11 4.3E-16 117.3 10.3 115 97-261 15-132 (216)
161 2h5e_A Peptide chain release f 99.3 1.4E-11 4.6E-16 132.0 11.6 68 184-262 82-149 (529)
162 2g3y_A GTP-binding protein GEM 99.3 1.4E-11 4.7E-16 116.5 9.7 117 97-261 39-159 (211)
163 1f60_A Elongation factor EEF1A 99.3 5.9E-12 2E-16 132.6 7.9 67 184-261 85-159 (458)
164 2www_A Methylmalonic aciduria 99.3 1.1E-11 3.9E-16 125.9 9.6 63 184-264 167-229 (349)
165 2xex_A Elongation factor G; GT 99.2 1.1E-11 3.6E-16 137.0 10.0 68 184-262 75-142 (693)
166 1g7s_A Translation initiation 99.2 8.2E-12 2.8E-16 135.4 8.9 133 94-261 4-136 (594)
167 1kk1_A EIF2gamma; initiation o 99.2 9.2E-11 3.1E-15 121.5 16.1 71 184-265 83-155 (410)
168 1s0u_A EIF-2-gamma, translatio 99.2 4.2E-11 1.4E-15 124.0 12.9 70 184-264 81-152 (408)
169 3cb4_D GTP-binding protein LEP 99.2 4.3E-11 1.5E-15 129.8 13.1 67 184-261 71-137 (599)
170 2ywe_A GTP-binding protein LEP 99.2 3.8E-11 1.3E-15 130.1 12.0 67 184-261 73-139 (600)
171 3mca_A HBS1, elongation factor 99.2 1.9E-12 6.5E-17 140.5 1.7 68 184-261 255-329 (592)
172 1jny_A EF-1-alpha, elongation 99.2 2.8E-11 9.4E-16 126.5 10.2 67 184-261 84-158 (435)
173 2cjw_A GTP-binding protein GEM 99.2 1.5E-11 5E-16 113.6 6.8 117 97-261 8-128 (192)
174 1dar_A EF-G, elongation factor 99.2 3E-11 1E-15 133.3 9.8 68 184-262 77-144 (691)
175 2wkq_A NPH1-1, RAS-related C3 99.2 1.4E-11 4.8E-16 122.2 5.3 114 97-262 157-274 (332)
176 3ec1_A YQEH GTPase; atnos1, at 99.2 4.6E-12 1.6E-16 129.8 1.7 123 95-265 162-292 (369)
177 2qag_A Septin-2, protein NEDD5 99.2 1.8E-10 6.2E-15 117.6 13.3 138 97-267 39-194 (361)
178 2f9l_A RAB11B, member RAS onco 99.1 5.6E-11 1.9E-15 109.8 8.1 115 97-261 7-124 (199)
179 2rdo_7 EF-G, elongation factor 99.1 2.2E-10 7.7E-15 126.6 14.1 68 184-262 82-149 (704)
180 1n0u_A EF-2, elongation factor 99.1 4E-11 1.4E-15 135.0 8.2 66 184-260 98-163 (842)
181 2qag_B Septin-6, protein NEDD5 99.1 1.7E-10 5.8E-15 120.0 11.2 132 98-269 45-198 (427)
182 3avx_A Elongation factor TS, e 99.1 1.6E-10 5.5E-15 131.9 11.4 68 184-262 359-427 (1289)
183 3dpu_A RAB family protein; roc 99.1 9E-11 3.1E-15 125.6 8.9 121 96-262 42-165 (535)
184 1r5b_A Eukaryotic peptide chai 99.1 7E-11 2.4E-15 124.6 7.5 67 184-261 121-195 (467)
185 3h2y_A GTPase family protein; 99.1 1.4E-11 4.8E-16 126.2 2.1 132 95-267 160-293 (368)
186 3p32_A Probable GTPase RV1496/ 99.1 1.7E-10 5.9E-15 117.3 9.7 64 184-265 172-235 (355)
187 1jal_A YCHF protein; nucleotid 99.1 2.8E-10 9.7E-15 116.1 9.9 43 184-229 66-108 (363)
188 3vqt_A RF-3, peptide chain rel 99.1 3.1E-10 1E-14 122.0 10.6 67 184-261 100-166 (548)
189 1oix_A RAS-related protein RAB 99.1 1.6E-10 5.5E-15 106.4 6.5 116 96-261 30-148 (191)
190 3sop_A Neuronal-specific septi 99.0 7.4E-10 2.5E-14 108.7 11.3 141 97-270 4-163 (270)
191 2qag_C Septin-7; cell cycle, c 99.0 1.8E-09 6.2E-14 112.3 14.5 136 98-267 34-187 (418)
192 4fn5_A EF-G 1, elongation fact 99.0 3.7E-10 1.3E-14 125.0 9.7 67 184-261 85-151 (709)
193 2p67_A LAO/AO transport system 99.0 1.1E-10 3.8E-15 118.1 4.3 65 184-266 149-213 (341)
194 2dy1_A Elongation factor G; tr 99.0 1E-09 3.5E-14 120.6 11.8 131 95-260 9-139 (665)
195 3j25_A Tetracycline resistance 99.0 1.5E-10 5.2E-15 126.6 4.4 67 184-261 67-133 (638)
196 2qm8_A GTPase/ATPase; G protei 99.0 7.8E-10 2.7E-14 111.8 8.3 61 183-261 147-207 (337)
197 3r7w_B Gtpase2, GTP-binding pr 99.0 7.1E-09 2.4E-13 104.3 15.2 116 98-263 2-122 (331)
198 2dby_A GTP-binding protein; GD 98.9 1.7E-09 6E-14 110.6 9.8 43 184-229 69-111 (368)
199 1udx_A The GTP-binding protein 98.9 6E-09 2.1E-13 108.3 12.4 121 96-262 158-284 (416)
200 1yrb_A ATP(GTP)binding protein 98.9 1.7E-09 5.9E-14 103.9 7.0 75 184-264 109-188 (262)
201 3c5h_A Glucocorticoid receptor 98.9 1.7E-09 5.9E-14 104.6 6.1 49 217-265 162-216 (255)
202 1tq4_A IIGP1, interferon-induc 98.9 1E-08 3.5E-13 106.4 11.9 119 94-260 68-188 (413)
203 2ohf_A Protein OLA1, GTP-bindi 98.9 2.4E-09 8.3E-14 110.3 7.0 105 95-229 22-128 (396)
204 2qnr_A Septin-2, protein NEDD5 98.8 1.8E-08 6.3E-13 100.1 11.8 48 217-265 126-173 (301)
205 2j37_W Signal recognition part 98.8 4.8E-09 1.6E-13 111.5 7.9 71 184-262 184-255 (504)
206 1f5n_A Interferon-induced guan 98.8 8.2E-09 2.8E-13 111.5 7.4 26 96-121 39-64 (592)
207 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 1.7E-08 5.9E-13 104.0 7.3 106 94-229 19-127 (392)
208 3szr_A Interferon-induced GTP- 98.7 6.5E-08 2.2E-12 105.2 12.0 80 183-263 146-230 (608)
209 1puj_A YLQF, conserved hypothe 98.6 2.8E-08 9.5E-13 98.0 5.3 29 97-125 122-150 (282)
210 2wsm_A Hydrogenase expression/ 98.6 5.2E-08 1.8E-12 90.9 5.7 24 95-118 30-53 (221)
211 3dm5_A SRP54, signal recogniti 98.5 3.2E-07 1.1E-11 95.8 10.6 72 184-262 183-254 (443)
212 2v3c_C SRP54, signal recogniti 98.5 2E-07 6.9E-12 97.3 8.5 71 184-261 181-252 (432)
213 3q5d_A Atlastin-1; G protein, 98.4 5.8E-07 2E-11 94.0 8.2 24 95-118 67-90 (447)
214 3cnl_A YLQF, putative uncharac 98.3 2.5E-07 8.7E-12 90.1 3.9 27 96-122 100-126 (262)
215 3kl4_A SRP54, signal recogniti 98.2 1.1E-06 3.8E-11 91.6 7.0 71 184-261 180-252 (433)
216 1j8m_F SRP54, signal recogniti 98.1 1E-05 3.5E-10 80.2 9.2 70 184-261 181-253 (297)
217 2yhs_A FTSY, cell division pro 97.9 4.5E-06 1.5E-10 88.1 4.0 74 184-260 376-451 (503)
218 2hf9_A Probable hydrogenase ni 97.9 1.2E-05 4.2E-10 74.9 6.3 25 95-119 38-62 (226)
219 1zu4_A FTSY; GTPase, signal re 97.9 7.2E-05 2.4E-09 74.9 11.6 75 184-261 192-268 (320)
220 2xxa_A Signal recognition part 97.8 3.7E-05 1.3E-09 80.1 9.1 70 184-261 184-254 (433)
221 3e70_C DPA, signal recognition 97.8 1.4E-05 4.8E-10 80.3 5.3 70 184-260 212-281 (328)
222 1rj9_A FTSY, signal recognitio 97.8 1.6E-05 5.4E-10 79.1 4.6 72 184-260 185-260 (304)
223 1vma_A Cell division protein F 97.7 0.0003 1E-08 69.9 12.4 71 184-260 187-262 (306)
224 2px0_A Flagellar biosynthesis 97.5 5.1E-05 1.7E-09 75.1 3.3 69 184-261 183-253 (296)
225 4dzz_A Plasmid partitioning pr 97.3 0.0017 5.7E-08 59.2 12.0 63 184-260 76-143 (206)
226 1t9h_A YLOQ, probable GTPase E 97.3 8.2E-05 2.8E-09 74.1 2.9 26 95-120 173-198 (307)
227 2ffh_A Protein (FFH); SRP54, s 97.3 0.00017 5.7E-09 75.0 5.1 70 184-260 181-250 (425)
228 2og2_A Putative signal recogni 97.3 0.00076 2.6E-08 68.5 9.4 71 185-260 242-316 (359)
229 1nij_A Hypothetical protein YJ 97.2 0.00016 5.5E-09 72.0 3.8 25 95-119 4-28 (318)
230 2rcn_A Probable GTPase ENGC; Y 97.2 0.00018 6.2E-09 73.0 4.2 25 96-120 216-240 (358)
231 3b9q_A Chloroplast SRP recepto 97.1 0.00054 1.8E-08 67.9 6.4 71 185-260 185-259 (302)
232 1ls1_A Signal recognition part 97.0 0.0004 1.4E-08 68.5 4.4 71 184-261 181-251 (295)
233 4ido_A Atlastin-1; GTPase, GTP 96.9 0.0011 3.6E-08 69.3 6.6 20 97-116 69-88 (457)
234 1u0l_A Probable GTPase ENGC; p 96.9 0.00076 2.6E-08 66.5 5.2 28 94-121 168-195 (301)
235 2yv5_A YJEQ protein; hydrolase 96.9 0.0012 4.3E-08 65.1 6.4 25 94-119 164-188 (302)
236 1u0l_A Probable GTPase ENGC; p 96.8 0.0014 4.8E-08 64.6 6.3 68 185-264 64-132 (301)
237 1znw_A Guanylate kinase, GMP k 96.4 0.0013 4.6E-08 60.7 2.9 24 95-118 20-43 (207)
238 3ney_A 55 kDa erythrocyte memb 96.3 0.0018 6.2E-08 60.2 3.1 26 93-118 17-42 (197)
239 1kgd_A CASK, peripheral plasma 96.3 0.0018 6.1E-08 58.5 3.0 23 96-118 6-28 (180)
240 1puj_A YLQF, conserved hypothe 96.2 0.0061 2.1E-07 59.6 6.3 65 189-265 4-68 (282)
241 1lvg_A Guanylate kinase, GMP k 96.2 0.0018 6.2E-08 59.6 2.3 22 97-118 6-27 (198)
242 3end_A Light-independent proto 96.1 0.0066 2.3E-07 59.4 6.3 64 184-259 157-225 (307)
243 1cip_A Protein (guanine nucleo 96.1 0.002 6.9E-08 65.2 2.5 67 184-260 193-273 (353)
244 3tr0_A Guanylate kinase, GMP k 96.0 0.0029 1E-07 57.5 2.9 22 97-118 9-30 (205)
245 1ye8_A Protein THEP1, hypothet 96.0 0.0029 9.8E-08 57.6 2.5 22 97-118 2-23 (178)
246 1zcb_A G alpha I/13; GTP-bindi 95.9 0.0022 7.6E-08 65.1 1.8 67 184-260 201-281 (362)
247 3tif_A Uncharacterized ABC tra 95.9 0.0036 1.2E-07 59.5 3.1 25 95-119 31-55 (235)
248 1z6g_A Guanylate kinase; struc 95.9 0.0031 1E-07 59.0 2.5 22 97-118 25-46 (218)
249 1zp6_A Hypothetical protein AT 95.9 0.004 1.4E-07 56.1 3.1 22 97-118 11-32 (191)
250 1azs_C GS-alpha; complex (lyas 95.8 0.0051 1.7E-07 63.3 4.0 67 184-260 217-297 (402)
251 3a00_A Guanylate kinase, GMP k 95.8 0.0034 1.2E-07 56.9 2.4 22 97-118 3-24 (186)
252 2yv5_A YJEQ protein; hydrolase 95.8 0.01 3.6E-07 58.4 6.1 52 212-263 74-126 (302)
253 3c8u_A Fructokinase; YP_612366 95.8 0.0035 1.2E-07 57.9 2.5 22 97-118 24-45 (208)
254 1s96_A Guanylate kinase, GMP k 95.8 0.0041 1.4E-07 58.5 2.9 23 97-119 18-40 (219)
255 2pcj_A ABC transporter, lipopr 95.8 0.004 1.4E-07 58.7 2.7 25 95-119 30-54 (224)
256 2eyu_A Twitching motility prot 95.7 0.0042 1.5E-07 60.0 2.7 25 94-118 24-48 (261)
257 2onk_A Molybdate/tungstate ABC 95.6 0.0054 1.8E-07 58.6 3.2 24 96-119 25-48 (240)
258 4fid_A G protein alpha subunit 95.6 0.0061 2.1E-07 61.4 3.7 67 184-260 161-241 (340)
259 4gp7_A Metallophosphoesterase; 95.6 0.005 1.7E-07 55.1 2.7 21 97-117 11-31 (171)
260 2cbz_A Multidrug resistance-as 95.6 0.0055 1.9E-07 58.3 3.1 25 95-119 31-55 (237)
261 1b0u_A Histidine permease; ABC 95.6 0.0055 1.9E-07 59.2 3.1 24 96-119 33-56 (262)
262 3tau_A Guanylate kinase, GMP k 95.6 0.0054 1.9E-07 56.7 3.0 24 96-119 9-32 (208)
263 1g6h_A High-affinity branched- 95.6 0.0055 1.9E-07 59.0 2.9 25 95-119 33-57 (257)
264 2j41_A Guanylate kinase; GMP, 95.6 0.0062 2.1E-07 55.4 3.1 23 97-119 8-30 (207)
265 1htw_A HI0065; nucleotide-bind 95.5 0.0059 2E-07 54.5 2.8 23 97-119 35-57 (158)
266 1mv5_A LMRA, multidrug resista 95.5 0.0056 1.9E-07 58.4 2.8 23 97-119 30-52 (243)
267 3asz_A Uridine kinase; cytidin 95.5 0.0054 1.8E-07 56.3 2.6 22 97-118 8-29 (211)
268 4g1u_C Hemin import ATP-bindin 95.5 0.0059 2E-07 59.2 2.9 25 95-119 37-61 (266)
269 1sgw_A Putative ABC transporte 95.5 0.0054 1.9E-07 57.6 2.6 24 96-119 36-59 (214)
270 2olj_A Amino acid ABC transpor 95.5 0.0064 2.2E-07 58.9 3.1 25 95-119 50-74 (263)
271 2xtz_A Guanine nucleotide-bind 95.5 0.0054 1.9E-07 62.0 2.6 67 184-260 183-263 (354)
272 3gfo_A Cobalt import ATP-bindi 95.5 0.0061 2.1E-07 59.4 2.9 24 96-119 35-58 (275)
273 2pze_A Cystic fibrosis transme 95.5 0.0063 2.2E-07 57.5 2.9 25 95-119 34-58 (229)
274 2ff7_A Alpha-hemolysin translo 95.5 0.0063 2.2E-07 58.3 2.9 25 95-119 35-59 (247)
275 3b85_A Phosphate starvation-in 95.4 0.0058 2E-07 57.1 2.5 22 97-118 24-45 (208)
276 1ji0_A ABC transporter; ATP bi 95.4 0.0064 2.2E-07 57.9 2.9 25 95-119 32-56 (240)
277 1vpl_A ABC transporter, ATP-bi 95.4 0.0069 2.4E-07 58.4 3.1 24 96-119 42-65 (256)
278 2v9p_A Replication protein E1; 95.4 0.007 2.4E-07 60.0 3.2 24 95-118 126-149 (305)
279 2d2e_A SUFC protein; ABC-ATPas 95.4 0.0069 2.4E-07 58.0 3.0 24 95-118 29-52 (250)
280 2qi9_C Vitamin B12 import ATP- 95.4 0.0069 2.3E-07 58.2 2.9 25 95-119 26-50 (249)
281 3jvv_A Twitching mobility prot 95.4 0.0058 2E-07 61.9 2.5 25 94-118 122-146 (356)
282 2zu0_C Probable ATP-dependent 95.4 0.0076 2.6E-07 58.4 3.2 23 96-118 47-69 (267)
283 2ghi_A Transport protein; mult 95.4 0.0075 2.6E-07 58.2 3.1 23 96-118 47-69 (260)
284 1np6_A Molybdopterin-guanine d 95.3 0.0068 2.3E-07 55.0 2.6 24 95-118 6-29 (174)
285 2ixe_A Antigen peptide transpo 95.3 0.0078 2.7E-07 58.4 3.1 24 96-119 46-69 (271)
286 3lnc_A Guanylate kinase, GMP k 95.3 0.007 2.4E-07 56.6 2.7 23 96-118 28-51 (231)
287 3lw7_A Adenylate kinase relate 95.3 0.0083 2.8E-07 52.4 2.8 20 96-115 2-21 (179)
288 2nq2_C Hypothetical ABC transp 95.3 0.008 2.7E-07 57.8 2.9 25 95-119 31-55 (253)
289 2yz2_A Putative ABC transporte 95.3 0.0086 2.9E-07 57.9 3.1 23 97-119 35-57 (266)
290 2ihy_A ABC transporter, ATP-bi 95.2 0.0083 2.8E-07 58.6 2.9 25 95-119 47-71 (279)
291 2bdt_A BH3686; alpha-beta prot 95.2 0.0079 2.7E-07 54.2 2.5 21 97-117 4-24 (189)
292 4eun_A Thermoresistant glucoki 95.1 0.0093 3.2E-07 54.5 2.9 23 96-118 30-52 (200)
293 3cnl_A YLQF, putative uncharac 95.0 0.0079 2.7E-07 58.1 2.1 52 209-265 13-64 (262)
294 2qor_A Guanylate kinase; phosp 95.0 0.01 3.6E-07 54.4 2.9 23 96-118 13-35 (204)
295 2bbw_A Adenylate kinase 4, AK4 95.0 0.012 4.1E-07 55.6 3.4 24 96-119 28-54 (246)
296 4a74_A DNA repair and recombin 95.0 0.0089 3E-07 55.1 2.3 23 96-118 26-48 (231)
297 1kag_A SKI, shikimate kinase I 95.0 0.0095 3.2E-07 52.6 2.4 22 97-118 6-27 (173)
298 1p9r_A General secretion pathw 95.0 0.0091 3.1E-07 61.7 2.5 25 94-118 166-190 (418)
299 2pjz_A Hypothetical protein ST 94.9 0.011 3.8E-07 57.2 2.8 23 97-119 32-54 (263)
300 2bbs_A Cystic fibrosis transme 94.9 0.012 4.1E-07 57.8 3.0 24 96-119 65-88 (290)
301 2ewv_A Twitching motility prot 94.9 0.011 3.6E-07 60.2 2.7 25 94-118 135-159 (372)
302 2ehv_A Hypothetical protein PH 94.9 0.012 4.3E-07 54.8 3.0 25 93-117 28-52 (251)
303 3nh6_A ATP-binding cassette SU 94.9 0.0087 3E-07 59.3 1.9 24 96-119 81-104 (306)
304 2gza_A Type IV secretion syste 94.8 0.011 3.9E-07 59.6 2.8 24 95-118 175-198 (361)
305 2f1r_A Molybdopterin-guanine d 94.8 0.0061 2.1E-07 55.2 0.5 23 96-118 3-25 (171)
306 2i3b_A HCR-ntpase, human cance 94.7 0.011 3.7E-07 54.3 2.1 22 97-118 3-24 (189)
307 3tui_C Methionine import ATP-b 94.7 0.015 5.2E-07 59.0 3.2 25 95-119 54-78 (366)
308 3ohm_A Guanine nucleotide-bind 94.7 0.017 5.8E-07 57.8 3.5 67 184-260 167-247 (327)
309 3aez_A Pantothenate kinase; tr 94.7 0.014 4.6E-07 58.0 2.8 22 97-118 92-113 (312)
310 3kta_A Chromosome segregation 94.7 0.015 5.1E-07 51.9 2.8 24 94-117 25-48 (182)
311 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.011 3.7E-07 59.1 1.9 24 95-118 171-194 (330)
312 3fvq_A Fe(3+) IONS import ATP- 94.6 0.016 5.5E-07 58.7 3.1 25 96-120 31-55 (359)
313 3ec2_A DNA replication protein 94.6 0.016 5.3E-07 51.9 2.7 23 96-118 39-61 (180)
314 1knq_A Gluconate kinase; ALFA/ 94.5 0.015 5.1E-07 51.6 2.5 22 97-118 10-31 (175)
315 2kjq_A DNAA-related protein; s 94.5 0.018 6.1E-07 50.6 2.9 24 95-118 36-59 (149)
316 1z47_A CYSA, putative ABC-tran 94.5 0.017 5.7E-07 58.5 3.0 26 95-120 41-66 (355)
317 2it1_A 362AA long hypothetical 94.5 0.018 6.2E-07 58.4 3.2 25 95-119 29-53 (362)
318 3uie_A Adenylyl-sulfate kinase 94.5 0.015 5.3E-07 53.0 2.5 22 97-118 27-48 (200)
319 2yyz_A Sugar ABC transporter, 94.5 0.018 6.2E-07 58.3 3.3 24 96-119 30-53 (359)
320 2jeo_A Uridine-cytidine kinase 94.4 0.016 5.4E-07 54.9 2.6 22 97-118 27-48 (245)
321 3rlf_A Maltose/maltodextrin im 94.4 0.02 6.7E-07 58.5 3.2 25 96-120 30-54 (381)
322 2qt1_A Nicotinamide riboside k 94.4 0.022 7.7E-07 52.0 3.3 23 96-118 22-44 (207)
323 1g29_1 MALK, maltose transport 94.3 0.019 6.5E-07 58.4 3.0 26 94-119 28-53 (372)
324 1v43_A Sugar-binding transport 94.3 0.021 7E-07 58.2 3.2 25 96-120 38-62 (372)
325 1cke_A CK, MSSA, protein (cyti 94.3 0.019 6.4E-07 53.1 2.7 23 96-118 6-28 (227)
326 1ex7_A Guanylate kinase; subst 94.3 0.019 6.4E-07 52.8 2.6 21 98-118 4-24 (186)
327 1t9h_A YLOQ, probable GTPase E 94.3 0.06 2.1E-06 53.3 6.5 51 213-263 82-133 (307)
328 3kb2_A SPBC2 prophage-derived 94.3 0.022 7.5E-07 49.9 3.0 22 97-118 3-24 (173)
329 3iij_A Coilin-interacting nucl 94.2 0.025 8.5E-07 50.4 3.2 24 94-117 10-33 (180)
330 2oap_1 GSPE-2, type II secreti 94.2 0.019 6.6E-07 60.8 2.7 22 97-118 262-283 (511)
331 1ly1_A Polynucleotide kinase; 94.1 0.023 7.9E-07 50.1 2.8 21 97-117 4-24 (181)
332 2x8a_A Nuclear valosin-contain 94.1 0.05 1.7E-06 52.6 5.3 21 98-118 47-67 (274)
333 3d31_A Sulfate/molybdate ABC t 94.0 0.017 5.9E-07 58.2 2.0 25 96-120 27-51 (348)
334 2rhm_A Putative kinase; P-loop 94.0 0.028 9.6E-07 50.3 3.2 21 97-117 7-27 (193)
335 3ozx_A RNAse L inhibitor; ATP 94.0 0.027 9.1E-07 60.1 3.5 24 97-120 27-50 (538)
336 1sq5_A Pantothenate kinase; P- 94.0 0.02 6.8E-07 56.4 2.3 22 97-118 82-103 (308)
337 1jjv_A Dephospho-COA kinase; P 94.0 0.026 9E-07 51.4 2.9 22 97-118 4-25 (206)
338 3bfv_A CAPA1, CAPB2, membrane 94.0 0.077 2.6E-06 51.2 6.4 65 184-260 192-257 (271)
339 2vp4_A Deoxynucleoside kinase; 93.9 0.021 7E-07 53.6 2.2 22 97-118 22-43 (230)
340 2w0m_A SSO2452; RECA, SSPF, un 93.9 0.026 8.9E-07 51.8 2.8 24 95-118 23-46 (235)
341 4e22_A Cytidylate kinase; P-lo 93.9 0.03 1E-06 53.4 3.3 25 96-120 28-55 (252)
342 3t61_A Gluconokinase; PSI-biol 93.9 0.024 8.3E-07 51.6 2.5 22 97-118 20-41 (202)
343 3gd7_A Fusion complex of cysti 93.9 0.027 9.3E-07 57.6 3.1 24 95-118 47-70 (390)
344 3tqc_A Pantothenate kinase; bi 93.8 0.027 9.1E-07 56.2 2.9 22 97-118 94-115 (321)
345 1lw7_A Transcriptional regulat 93.8 0.02 6.8E-07 57.7 1.9 24 95-118 170-193 (365)
346 1oxx_K GLCV, glucose, ABC tran 93.8 0.016 5.6E-07 58.5 1.3 24 96-119 32-55 (353)
347 2if2_A Dephospho-COA kinase; a 93.7 0.025 8.6E-07 51.4 2.3 21 97-117 3-23 (204)
348 1rz3_A Hypothetical protein rb 93.7 0.025 8.6E-07 51.8 2.3 22 97-118 24-45 (201)
349 2npi_A Protein CLP1; CLP1-PCF1 93.7 0.025 8.6E-07 59.1 2.6 27 94-120 137-163 (460)
350 1gvn_B Zeta; postsegregational 93.7 0.052 1.8E-06 52.9 4.6 22 97-118 35-56 (287)
351 1xjc_A MOBB protein homolog; s 93.7 0.031 1.1E-06 50.5 2.8 24 95-118 4-27 (169)
352 3cm0_A Adenylate kinase; ATP-b 93.6 0.032 1.1E-06 49.8 2.7 21 97-117 6-26 (186)
353 1kht_A Adenylate kinase; phosp 93.6 0.036 1.2E-06 49.3 3.1 21 97-117 5-25 (192)
354 3h2y_A GTPase family protein; 93.6 0.049 1.7E-06 55.1 4.4 53 207-262 59-111 (368)
355 1qhx_A CPT, protein (chloramph 93.6 0.037 1.3E-06 49.0 3.0 23 96-118 4-26 (178)
356 3vaa_A Shikimate kinase, SK; s 93.5 0.034 1.2E-06 50.6 2.9 23 96-118 26-48 (199)
357 2jaq_A Deoxyguanosine kinase; 93.5 0.032 1.1E-06 50.3 2.6 21 97-117 2-22 (205)
358 2yvu_A Probable adenylyl-sulfa 93.5 0.039 1.3E-06 49.4 3.2 22 97-118 15-36 (186)
359 3ec1_A YQEH GTPase; atnos1, at 93.5 0.054 1.8E-06 54.8 4.5 52 207-262 61-113 (369)
360 2cvh_A DNA repair and recombin 93.5 0.041 1.4E-06 50.2 3.3 24 94-117 19-42 (220)
361 1nks_A Adenylate kinase; therm 93.4 0.034 1.2E-06 49.5 2.7 21 97-117 3-23 (194)
362 1cr0_A DNA primase/helicase; R 93.4 0.035 1.2E-06 53.8 2.9 24 95-118 35-58 (296)
363 1f2t_A RAD50 ABC-ATPase; DNA d 93.4 0.04 1.4E-06 48.3 2.9 23 94-116 22-44 (149)
364 1ixz_A ATP-dependent metallopr 93.3 0.031 1.1E-06 52.8 2.3 21 98-118 52-72 (254)
365 1gtv_A TMK, thymidylate kinase 93.2 0.019 6.4E-07 52.5 0.5 22 97-118 2-23 (214)
366 1uf9_A TT1252 protein; P-loop, 93.2 0.042 1.4E-06 49.6 2.8 22 97-118 10-31 (203)
367 2pez_A Bifunctional 3'-phospho 93.2 0.042 1.4E-06 48.9 2.8 22 97-118 7-28 (179)
368 2v54_A DTMP kinase, thymidylat 93.1 0.049 1.7E-06 49.2 3.2 22 97-118 6-27 (204)
369 2plr_A DTMP kinase, probable t 93.1 0.045 1.5E-06 49.6 2.9 21 97-117 6-26 (213)
370 1tev_A UMP-CMP kinase; ploop, 93.1 0.048 1.6E-06 48.6 3.0 21 97-117 5-25 (196)
371 1jbk_A CLPB protein; beta barr 93.0 0.054 1.8E-06 47.5 3.2 23 96-118 44-66 (195)
372 2yl4_A ATP-binding cassette SU 93.0 0.044 1.5E-06 59.0 3.1 23 97-119 372-394 (595)
373 3cio_A ETK, tyrosine-protein k 93.0 0.17 5.9E-06 49.4 7.1 65 184-260 214-279 (299)
374 1odf_A YGR205W, hypothetical 3 93.0 0.04 1.4E-06 53.9 2.5 23 96-118 32-54 (290)
375 3qf4_B Uncharacterized ABC tra 93.0 0.048 1.6E-06 58.7 3.3 24 96-119 382-405 (598)
376 1vht_A Dephospho-COA kinase; s 93.0 0.051 1.8E-06 50.0 3.1 21 97-117 6-26 (218)
377 3j16_B RLI1P; ribosome recycli 92.9 0.044 1.5E-06 59.3 3.0 25 97-121 105-129 (608)
378 1yqt_A RNAse L inhibitor; ATP- 92.9 0.057 2E-06 57.5 3.8 25 96-120 48-72 (538)
379 3euj_A Chromosome partition pr 92.9 0.045 1.5E-06 57.6 2.9 24 96-119 30-53 (483)
380 2c95_A Adenylate kinase 1; tra 92.9 0.053 1.8E-06 48.6 3.0 23 95-117 9-31 (196)
381 3b60_A Lipid A export ATP-bind 92.9 0.045 1.6E-06 58.7 3.0 23 97-119 371-393 (582)
382 1n0w_A DNA repair protein RAD5 92.8 0.046 1.6E-06 50.7 2.7 25 94-118 23-47 (243)
383 3qf7_A RAD50; ABC-ATPase, ATPa 92.8 0.048 1.6E-06 55.1 2.9 23 94-116 22-44 (365)
384 3la6_A Tyrosine-protein kinase 92.8 0.12 4.2E-06 50.3 5.8 66 184-261 202-268 (286)
385 3b5x_A Lipid A export ATP-bind 92.8 0.049 1.7E-06 58.5 3.1 23 97-119 371-393 (582)
386 3trf_A Shikimate kinase, SK; a 92.8 0.059 2E-06 48.0 3.1 23 95-117 5-27 (185)
387 1y63_A LMAJ004144AAA protein; 92.7 0.059 2E-06 48.5 3.1 24 95-118 10-33 (184)
388 2p5t_B PEZT; postsegregational 92.7 0.069 2.4E-06 50.7 3.8 22 97-118 34-55 (253)
389 2wwf_A Thymidilate kinase, put 92.7 0.055 1.9E-06 49.2 2.9 22 96-117 11-32 (212)
390 2cdn_A Adenylate kinase; phosp 92.7 0.068 2.3E-06 48.5 3.5 24 94-117 18-42 (201)
391 1nn5_A Similar to deoxythymidy 92.7 0.059 2E-06 49.0 3.1 21 97-117 11-31 (215)
392 1iy2_A ATP-dependent metallopr 92.6 0.045 1.5E-06 52.6 2.3 21 98-118 76-96 (278)
393 4eaq_A DTMP kinase, thymidylat 92.6 0.059 2E-06 50.7 3.0 22 97-118 28-49 (229)
394 1aky_A Adenylate kinase; ATP:A 92.5 0.056 1.9E-06 49.8 2.8 21 97-117 6-26 (220)
395 2ph1_A Nucleotide-binding prot 92.5 0.33 1.1E-05 46.0 8.3 65 184-259 129-194 (262)
396 3umf_A Adenylate kinase; rossm 92.4 0.072 2.4E-06 50.0 3.3 30 89-118 23-52 (217)
397 2z0h_A DTMP kinase, thymidylat 92.4 0.061 2.1E-06 48.2 2.8 22 97-118 2-23 (197)
398 1svm_A Large T antigen; AAA+ f 92.4 0.064 2.2E-06 54.6 3.2 24 95-118 169-192 (377)
399 1in4_A RUVB, holliday junction 92.3 0.051 1.7E-06 53.9 2.3 22 97-118 53-74 (334)
400 4a82_A Cystic fibrosis transme 92.3 0.04 1.4E-06 59.1 1.6 24 96-119 368-391 (578)
401 3tlx_A Adenylate kinase 2; str 92.3 0.074 2.5E-06 50.3 3.3 23 95-117 28-51 (243)
402 3bk7_A ABC transporter ATP-bin 92.3 0.075 2.6E-06 57.5 3.7 25 96-120 118-142 (607)
403 2vli_A Antibiotic resistance p 92.3 0.061 2.1E-06 47.6 2.6 21 97-117 7-27 (183)
404 4b4t_L 26S protease subunit RP 92.2 0.73 2.5E-05 47.7 10.9 22 97-118 217-238 (437)
405 3a4m_A L-seryl-tRNA(SEC) kinas 92.2 0.065 2.2E-06 51.2 2.8 22 96-117 5-26 (260)
406 3ozx_A RNAse L inhibitor; ATP 92.2 0.062 2.1E-06 57.3 2.8 25 96-120 295-319 (538)
407 2bwj_A Adenylate kinase 5; pho 92.1 0.074 2.5E-06 47.7 2.9 22 96-117 13-34 (199)
408 1zd8_A GTP:AMP phosphotransfer 92.1 0.074 2.5E-06 49.4 2.9 22 96-117 8-29 (227)
409 2pbr_A DTMP kinase, thymidylat 92.1 0.071 2.4E-06 47.5 2.7 21 97-117 2-22 (195)
410 3qks_A DNA double-strand break 92.0 0.075 2.6E-06 49.0 2.9 23 94-116 22-44 (203)
411 2iyv_A Shikimate kinase, SK; t 92.0 0.068 2.3E-06 47.6 2.5 22 96-117 3-24 (184)
412 3j16_B RLI1P; ribosome recycli 91.9 0.078 2.7E-06 57.3 3.4 24 97-120 380-403 (608)
413 3qf4_A ABC transporter, ATP-bi 91.9 0.055 1.9E-06 58.2 2.1 24 96-119 370-393 (587)
414 3ake_A Cytidylate kinase; CMP 91.9 0.077 2.6E-06 47.9 2.8 22 96-117 3-24 (208)
415 1m7g_A Adenylylsulfate kinase; 91.9 0.075 2.6E-06 48.8 2.7 22 97-118 27-48 (211)
416 3cwq_A Para family chromosome 91.9 0.13 4.4E-06 47.4 4.4 65 184-261 68-134 (209)
417 1qf9_A UMP/CMP kinase, protein 91.8 0.076 2.6E-06 47.2 2.6 21 97-117 8-28 (194)
418 1yqt_A RNAse L inhibitor; ATP- 91.7 0.076 2.6E-06 56.5 3.0 25 96-120 313-337 (538)
419 1zak_A Adenylate kinase; ATP:A 91.7 0.077 2.6E-06 49.0 2.7 21 97-117 7-27 (222)
420 1e6c_A Shikimate kinase; phosp 91.7 0.078 2.7E-06 46.5 2.5 21 97-117 4-24 (173)
421 3fb4_A Adenylate kinase; psych 91.7 0.077 2.6E-06 48.6 2.5 21 97-117 2-22 (216)
422 2p65_A Hypothetical protein PF 91.6 0.079 2.7E-06 46.4 2.5 24 95-118 43-66 (187)
423 3bk7_A ABC transporter ATP-bin 91.6 0.082 2.8E-06 57.2 3.0 25 96-120 383-407 (607)
424 1ukz_A Uridylate kinase; trans 91.6 0.09 3.1E-06 47.6 2.9 21 97-117 17-37 (203)
425 3bos_A Putative DNA replicatio 91.6 0.1 3.5E-06 47.8 3.3 24 95-118 52-75 (242)
426 2obl_A ESCN; ATPase, hydrolase 91.5 0.081 2.8E-06 53.2 2.7 25 95-119 71-95 (347)
427 3nwj_A ATSK2; P loop, shikimat 91.4 0.082 2.8E-06 50.6 2.5 23 95-117 48-70 (250)
428 3dl0_A Adenylate kinase; phosp 91.3 0.09 3.1E-06 48.2 2.6 21 97-117 2-22 (216)
429 2pt5_A Shikimate kinase, SK; a 91.3 0.096 3.3E-06 45.7 2.7 21 97-117 2-22 (168)
430 4aby_A DNA repair protein RECN 91.3 0.036 1.2E-06 56.3 -0.2 24 94-117 59-82 (415)
431 2ze6_A Isopentenyl transferase 91.3 0.085 2.9E-06 50.3 2.5 22 97-118 3-24 (253)
432 1nlf_A Regulatory protein REPA 91.2 0.086 2.9E-06 50.7 2.5 26 92-117 27-52 (279)
433 1lv7_A FTSH; alpha/beta domain 91.2 0.08 2.8E-06 50.0 2.3 22 97-118 47-68 (257)
434 1via_A Shikimate kinase; struc 91.2 0.096 3.3E-06 46.3 2.6 21 97-117 6-26 (175)
435 1e69_A Chromosome segregation 91.2 0.11 3.6E-06 51.3 3.2 23 94-116 23-45 (322)
436 1q3t_A Cytidylate kinase; nucl 91.1 0.11 3.8E-06 48.5 3.1 24 94-117 15-38 (236)
437 3zq6_A Putative arsenical pump 91.0 0.094 3.2E-06 51.9 2.5 41 219-260 223-264 (324)
438 3cf0_A Transitional endoplasmi 90.9 0.21 7.3E-06 48.5 5.0 22 97-118 51-72 (301)
439 2dpy_A FLII, flagellum-specifi 90.9 0.11 3.6E-06 54.0 3.0 24 96-119 158-181 (438)
440 3zvl_A Bifunctional polynucleo 90.9 0.16 5.6E-06 52.0 4.4 24 95-118 258-281 (416)
441 1fnn_A CDC6P, cell division co 90.8 0.1 3.4E-06 51.8 2.6 23 96-118 45-67 (389)
442 2w58_A DNAI, primosome compone 90.8 0.12 3.9E-06 46.8 2.8 23 96-118 55-77 (202)
443 3h4m_A Proteasome-activating n 90.7 0.21 7.3E-06 47.6 4.7 23 96-118 52-74 (285)
444 3ug7_A Arsenical pump-driving 90.6 0.079 2.7E-06 53.1 1.6 42 218-260 237-279 (349)
445 2xb4_A Adenylate kinase; ATP-b 90.6 0.12 4.2E-06 47.9 2.8 21 97-117 2-22 (223)
446 1njg_A DNA polymerase III subu 90.5 0.14 4.8E-06 46.3 3.1 23 96-118 46-68 (250)
447 1ak2_A Adenylate kinase isoenz 90.5 0.15 5.1E-06 47.5 3.3 22 96-117 17-38 (233)
448 3qkt_A DNA double-strand break 90.5 0.12 4.2E-06 51.3 2.9 23 94-116 22-44 (339)
449 1w1w_A Structural maintenance 90.4 0.13 4.5E-06 52.8 3.1 25 94-118 25-49 (430)
450 1qhl_A Protein (cell division 90.4 0.024 8.3E-07 53.6 -2.3 25 96-120 28-52 (227)
451 3m6a_A ATP-dependent protease 90.3 0.038 1.3E-06 58.9 -1.1 25 94-118 107-131 (543)
452 2chg_A Replication factor C sm 90.3 0.14 4.8E-06 45.8 2.9 22 97-118 40-61 (226)
453 1sxj_E Activator 1 40 kDa subu 90.3 0.1 3.4E-06 51.5 2.0 22 97-118 38-59 (354)
454 3q9l_A Septum site-determining 90.3 0.3 1E-05 45.7 5.3 63 184-259 114-185 (260)
455 1e4v_A Adenylate kinase; trans 90.2 0.12 4.2E-06 47.4 2.5 21 97-117 2-22 (214)
456 3r20_A Cytidylate kinase; stru 90.2 0.15 5E-06 48.5 3.0 22 96-117 10-31 (233)
457 4f4c_A Multidrug resistance pr 90.2 0.13 4.3E-06 60.6 3.1 22 97-118 1107-1128(1321)
458 3te6_A Regulatory protein SIR3 90.2 0.3 1E-05 48.5 5.4 25 94-118 44-68 (318)
459 3be4_A Adenylate kinase; malar 90.1 0.14 4.8E-06 47.2 2.8 21 97-117 7-27 (217)
460 2f6r_A COA synthase, bifunctio 90.0 0.15 5E-06 49.4 2.9 20 97-116 77-96 (281)
461 2ius_A DNA translocase FTSK; n 89.9 0.13 4.3E-06 54.6 2.5 26 92-117 164-189 (512)
462 3l82_B F-box only protein 4; T 89.9 2.2 7.4E-05 40.1 10.6 72 184-260 96-176 (227)
463 3ea0_A ATPase, para family; al 89.9 0.32 1.1E-05 45.0 5.2 65 184-261 119-186 (245)
464 2qby_A CDC6 homolog 1, cell di 89.8 0.13 4.3E-06 50.8 2.4 24 95-118 45-68 (386)
465 1tue_A Replication protein E1; 89.8 0.15 5E-06 47.8 2.5 21 97-117 60-80 (212)
466 1uj2_A Uridine-cytidine kinase 89.8 0.17 5.7E-06 47.9 3.0 21 97-117 24-44 (252)
467 2dr3_A UPF0273 protein PH0284; 89.7 0.18 6.1E-06 46.6 3.1 24 94-117 22-45 (247)
468 4f4c_A Multidrug resistance pr 89.6 0.14 4.9E-06 60.2 2.9 22 97-118 446-467 (1321)
469 1zuh_A Shikimate kinase; alpha 89.5 0.17 5.9E-06 44.2 2.8 21 97-117 9-29 (168)
470 2o5v_A DNA replication and rep 89.4 0.15 5.2E-06 51.5 2.6 24 94-117 25-48 (359)
471 2ocp_A DGK, deoxyguanosine kin 89.4 0.18 6.2E-06 47.2 2.9 22 97-118 4-25 (241)
472 2qz4_A Paraplegin; AAA+, SPG7, 89.3 0.21 7.3E-06 46.7 3.4 24 95-118 39-62 (262)
473 3exa_A TRNA delta(2)-isopenten 89.3 0.16 5.5E-06 50.5 2.6 25 94-118 2-26 (322)
474 1a7j_A Phosphoribulokinase; tr 89.3 0.16 5.6E-06 49.5 2.7 23 95-117 5-27 (290)
475 2iw3_A Elongation factor 3A; a 89.3 0.11 3.6E-06 59.2 1.5 25 96-120 700-724 (986)
476 1ltq_A Polynucleotide kinase; 89.3 0.18 6E-06 48.7 2.9 21 97-117 4-24 (301)
477 3k9g_A PF-32 protein; ssgcid, 89.3 0.59 2E-05 44.1 6.5 63 184-259 145-209 (267)
478 1p5z_B DCK, deoxycytidine kina 89.3 0.1 3.5E-06 49.6 1.1 23 96-118 25-47 (263)
479 3b9p_A CG5977-PA, isoform A; A 89.2 0.18 6.3E-06 48.4 2.9 23 96-118 55-77 (297)
480 1pzn_A RAD51, DNA repair and r 89.1 0.15 5.2E-06 51.1 2.3 25 94-118 130-154 (349)
481 4ag6_A VIRB4 ATPase, type IV s 88.9 0.17 5.8E-06 51.1 2.5 27 94-120 34-60 (392)
482 3ux8_A Excinuclease ABC, A sub 88.8 0.12 4E-06 56.5 1.3 22 95-116 348-369 (670)
483 1jr3_A DNA polymerase III subu 88.8 0.31 1.1E-05 48.0 4.4 22 97-118 40-61 (373)
484 2grj_A Dephospho-COA kinase; T 88.7 0.21 7.2E-06 45.7 2.8 22 97-118 14-35 (192)
485 2iw3_A Elongation factor 3A; a 88.6 0.19 6.5E-06 57.1 2.9 26 95-120 461-486 (986)
486 3auy_A DNA double-strand break 88.5 0.19 6.6E-06 50.5 2.6 23 94-116 24-46 (371)
487 1sxj_C Activator 1 40 kDa subu 88.5 0.18 6E-06 49.9 2.3 22 97-118 48-69 (340)
488 1tf7_A KAIC; homohexamer, hexa 88.4 0.2 6.8E-06 52.9 2.7 22 94-115 38-59 (525)
489 3g5u_A MCG1178, multidrug resi 88.4 0.18 6.2E-06 59.1 2.6 22 97-118 418-439 (1284)
490 1g3q_A MIND ATPase, cell divis 88.3 0.43 1.5E-05 44.0 4.6 65 184-261 112-177 (237)
491 2rcn_A Probable GTPase ENGC; Y 88.2 0.47 1.6E-05 47.8 5.2 49 215-264 128-177 (358)
492 3cr8_A Sulfate adenylyltranfer 88.2 0.13 4.6E-06 54.9 1.2 22 97-118 371-392 (552)
493 2qmh_A HPR kinase/phosphorylas 88.2 0.25 8.5E-06 45.9 2.9 24 97-120 36-59 (205)
494 1l8q_A Chromosomal replication 88.2 0.2 7E-06 48.9 2.5 22 97-118 39-60 (324)
495 3v9p_A DTMP kinase, thymidylat 87.9 0.26 8.8E-06 46.5 2.9 25 94-118 24-48 (227)
496 3n70_A Transport activator; si 87.8 0.25 8.6E-06 42.5 2.5 22 97-118 26-47 (145)
497 3a8t_A Adenylate isopentenyltr 87.7 0.28 9.4E-06 49.2 3.1 23 96-118 41-63 (339)
498 1hyq_A MIND, cell division inh 87.6 0.4 1.4E-05 45.1 4.1 66 184-262 111-177 (263)
499 1sxj_D Activator 1 41 kDa subu 87.5 0.24 8.2E-06 48.5 2.6 23 96-118 59-81 (353)
500 2v1u_A Cell division control p 87.5 0.23 7.7E-06 49.0 2.3 24 95-118 44-67 (387)
No 1
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=100.00 E-value=1.4e-54 Score=467.53 Aligned_cols=379 Identities=32% Similarity=0.548 Sum_probs=319.6
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhhccccccCCCCCCccccCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCC
Q psy13475 53 KTIETTLKELKRLYDNAIKPLEITYKYRDLSNRHFADPEIFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPS 132 (468)
Q Consensus 53 ~~~~~v~~~l~~ly~~~~~ple~~~~~~~~~s~~l~d~~~~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~pt 132 (468)
+.+.+++++|+++|++++.|+++.+.|+.|+++.+.+..+.+.+.|+|+|.+|+|||||||+|+|.++++ ..+++.|+
T Consensus 23 ~~~~~~~~~L~~~y~~~i~~le~~~~~~~~~~~~l~~~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~--~~vs~~p~ 100 (550)
T 2qpt_A 23 EAIRTVTSSLKELYRTKLLPLEEHYRFGSFHSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPG--SRVGPEPT 100 (550)
T ss_dssp ---CCHHHHHHHHHHHHTHHHHHHTTGGGTTCCCCCSTTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSS--CCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhccccccchhcccccccCCcEEEEECCCCCCHHHHHHHHhCCcccc--CccCCCCc
Confidence 4577889999999999999999999999999999999888899999999999999999999999998852 35788899
Q ss_pred CceeEEEecCCCCccccCcccccC--ccccccccccccceeeeEEeecCCCCCcceEEEeCCCCchhhh-hhhhccchhH
Q psy13475 133 PAYFNILSWGESPTILDGTQLAAD--WTFSGLQKFGQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRK-QVERQFPFND 209 (468)
Q Consensus 133 T~~~~~i~~g~~~~~i~G~~l~~D--~~f~~L~~fg~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~-~~~r~~d~~~ 209 (468)
|.+++.+.+++...+.+|+++..+ .+|..+..||..+.+.+.++.++++.+.+++||||||+.++.. .+++.++|..
T Consensus 101 T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~ 180 (550)
T 2qpt_A 101 TDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPA 180 (550)
T ss_dssp CCSEEEEECCSSSEEECCC------------------CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHH
T ss_pred cceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHH
Confidence 999999999999888899887765 5889999999888888888888877667899999999997544 3667777888
Q ss_pred HHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCChHHHHHHhhhhhhccccccCCCCCCeec
Q psy13475 210 ACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKPEELMRVQGTLIWNISPLMSSSEPPVMY 289 (468)
Q Consensus 210 ~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~~el~~v~~~l~~~ls~~~~~pe~p~vy 289 (468)
.+.+++.++|+|++|+|++..++.+++..+++.+...+.|+++|+||+|+++.+++.++++.++|+...+.+.++...+|
T Consensus 181 ~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l~~s~~~i~~vs~l~~~~ 260 (550)
T 2qpt_A 181 VLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALMWALGKVVGTPEVLRVY 260 (550)
T ss_dssp HHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHCCSSCCCEE
T ss_pred HHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHhhcchhheeechHhhhhc
Confidence 99999999999999999988667888888999988878899999999999998899999999989999999999999999
Q ss_pred cCCCCCCCCCCCchHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHhhhccceeeEEEEehhhHHhhccCCcccccChh
Q psy13475 290 STSLWSNPYEVGAPIRLLQAQEHAFL---RDLRNAIDKR-VENKIASARRFAVRVRNHAKMVDCYLTTYYNHKTFFGNRK 365 (468)
Q Consensus 290 ~~s~w~~p~~~~~~~~~~~~ee~~l~---~eL~~~~~~~-i~~~~~~~~~~~~~~~i~a~i~~~~v~~~~~~~~~~Gk~~ 365 (468)
.+++|..|...+.+.++|.+|.+.++ .|+++++.++ +++++++++ .++|||.| |+++.+||+|+|||+|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~E~e~l~~~l~elP~~~~v~~i~~~~~~~~----~~~I~a~I---~v~~~sqk~i~iGk~g 333 (550)
T 2qpt_A 261 IGSFWSQPLLVPDNRRLFELEEQDLFRDIQGLPRHAALRKLNDLVKRAR----LVRVHAYI---ISYLKKEMPTVFGKEN 333 (550)
T ss_dssp ESCCSSSCCSSCTTHHHHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHSCSSSCHHH
T ss_pred cccCCCCcccCCCCHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccCC----eEEEEEEE---EEeecccceeEECCch
Confidence 99999988777899999999854444 3567777777 899998654 48899998 9999999999999999
Q ss_pred hHHHHHHhCCCchhhHHHHHhHhCCCCCCCCCHHHHHHHHhcCCCccccccccccccccCCcchhHHHHhhhChHHHhhh
Q psy13475 366 KVADDIIEHPQDYHIYAGLSTLTNISRYDLPDPEVYRDFFRLNPVFEFKKLSDTCTYFRGCPINRLDVAIAYDLPELVGK 445 (468)
Q Consensus 366 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~d~p~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~p~l~~~ 445 (468)
++.+ ++++++ .||+++++.||+|+||||+++.|+++|+.+||++|++|+ +|+|+.||.||++|||.||.+
T Consensus 334 ~~~~-li~~l~--~~~~~i~~~~~~~~~d~p~~~~~~~~~~~~~~~~f~~l~-------~~~~~~l~~~~~~d~~~l~~~ 403 (550)
T 2qpt_A 334 KKKQ-LILKLP--VIFAKIQLEHHISPGDFPDCQKMQELLMAHDFTKFHSLK-------PKLLEALDDMLAQDIAKLMPL 403 (550)
T ss_dssp HHHH-HHHTHH--HHHHHHHHTTCCCTTTCCCHHHHHHHHHHSCGGGSCCCC-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHhHH--HHHHHHHHHhCCCccccCCHHHHHhhhhhCChhhccccC-------HHHHHHHHhhhHhhHHHHHHh
Confidence 8765 788887 799999999999999999999999999999999999998 459999999999999999999
Q ss_pred ccccH
Q psy13475 446 YKKSA 450 (468)
Q Consensus 446 ~~~~~ 450 (468)
++++.
T Consensus 404 ~~~~~ 408 (550)
T 2qpt_A 404 LRQEE 408 (550)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 99753
No 2
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=2.2e-29 Score=252.48 Aligned_cols=230 Identities=19% Similarity=0.279 Sum_probs=175.7
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
..|+|+++|.+|||||||+|+|+|.++++++.. +++|++.+
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~---------------------------------------~~tT~~~~ 49 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPK---------------------------------------AGTTRMRV 49 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSS---------------------------------------SCCCCSCE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCC---------------------------------------CCceeeEE
Confidence 456899999999999999999999998776555 46666666
Q ss_pred EEeecCCCCCcceEEEeCCCCchhh--hhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHH-HHHHhcCCCcE
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIR--KQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAI-LDQLKGREYQT 250 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~--~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~l-l~~l~~~~~~i 250 (468)
.++.... ...+++||||||+.+.. ....+. +...+..++..+|++++|+|++. ..+.+...+ ++.+...+.|+
T Consensus 50 ~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~--~~~~~~~~l~~aD~il~VvD~~~-~~~~~~~~~~~~~l~~~~~pv 125 (308)
T 3iev_A 50 LGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHS--MVEIAKQSLEEADVILFMIDATE-GWRPRDEEIYQNFIKPLNKPV 125 (308)
T ss_dssp EEEEEET-TTEEEEEEECCCCCCCCTTCHHHHH--HHHHHHHHHHHCSEEEEEEETTT-BSCHHHHHHHHHHTGGGCCCE
T ss_pred EEEEecC-CCCeEEEEECcCCCccccchhHHHH--HHHHHHHHhhcCCEEEEEEeCCC-CCCchhHHHHHHHHHhcCCCE
Confidence 6655332 13689999999998765 334444 67778888999999999999987 567777776 78888778899
Q ss_pred EEEEeCCCCC-ChHHHHHH-------hh--hhhhccccccCC-------------CCCCeeccCCCCCCCCCCCchHHHH
Q psy13475 251 RIILNKADQV-KPEELMRV-------QG--TLIWNISPLMSS-------------SEPPVMYSTSLWSNPYEVGAPIRLL 307 (468)
Q Consensus 251 iiVlNK~D~v-~~~el~~v-------~~--~l~~~ls~~~~~-------------pe~p~vy~~s~w~~p~~~~~~~~~~ 307 (468)
++|+||+|+. +.+.+... .+ ..++.+|+..+. ++.|..|+.+ ..++.+.+++
T Consensus 126 ilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~-----~~td~~~~~~ 200 (308)
T 3iev_A 126 IVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPED-----MITDLPLRLL 200 (308)
T ss_dssp EEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTT-----CCBCCCHHHH
T ss_pred EEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcc-----cccCCCHHHH
Confidence 9999999998 44433222 11 234566777665 7778878776 7888889988
Q ss_pred HHH---HHHHH---HHHHHHHHHHHHHHHHHhhhccceeeEEEEehhhHHhhccCCcccccChhhHHHHHHhCC
Q psy13475 308 QAQ---EHAFL---RDLRNAIDKRVENKIASARRFAVRVRNHAKMVDCYLTTYYNHKTFFGNRKKVADDIIEHP 375 (468)
Q Consensus 308 ~~e---e~~l~---~eL~~~~~~~i~~~~~~~~~~~~~~~i~a~i~~~~v~~~~~~~~~~Gk~~~~~~~~~~~~ 375 (468)
.+| ++.+. .|+|+++++.++++.++.. ....++|+|.| ||++.+||+|+|||+|+++++|...-
T Consensus 201 ~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~-~~~~~~i~a~i---~ve~~~~k~i~ig~~g~~ik~i~~~a 270 (308)
T 3iev_A 201 AAEIVREKAMMLTREEVPTSIAVKINEIKPGDA-NPNMLVIKGEI---IVDRENLKPIIIGKKGQRLKEIGKRA 270 (308)
T ss_dssp HHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSS-CTTSEEEEEEE---EESSGGGHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccC-CCCeEEEEEEE---EEccCCcceEEEcCCcHHHHHHHHHH
Confidence 887 33333 3899999998888765430 01258999999 99999999999999999999886544
No 3
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.95 E-value=1.4e-28 Score=246.25 Aligned_cols=229 Identities=20% Similarity=0.227 Sum_probs=171.3
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
.+.+.|+++|.+|||||||+|+|+|.++++++.. ++||++.
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~---------------------------------------~~tTr~~ 45 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPR---------------------------------------PQTTRKR 45 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSS---------------------------------------SCCCCSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCC---------------------------------------CCceeEE
Confidence 3667899999999999999999999998765544 4566666
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC--CCcE
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR--EYQT 250 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~--~~~i 250 (468)
+.++.... ..+++||||||+.++...+++. |...+..++..+|++++|+|++. ..+.....+++.+... +.|+
T Consensus 46 i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~--~~~~~~~~l~~ad~il~VvD~~~-~~~~~~~~i~~~l~~~~~~~p~ 120 (301)
T 1wf3_A 46 LRGILTEG--RRQIVFVDTPGLHKPMDALGEF--MDQEVYEALADVNAVVWVVDLRH-PPTPEDELVARALKPLVGKVPI 120 (301)
T ss_dssp EEEEEEET--TEEEEEEECCCCCCCCSHHHHH--HHHHHHHHTSSCSEEEEEEETTS-CCCHHHHHHHHHHGGGTTTSCE
T ss_pred EEEEEEeC--CcEEEEecCccccchhhHHHHH--HHHHHHHHHhcCCEEEEEEECCC-CCChHHHHHHHHHHhhcCCCCE
Confidence 66554322 3689999999998765555555 67778888999999999999987 4677777777788766 7899
Q ss_pred EEEEeCCCCCChHH-HHHHhhh-----hhhccccccCC-------------CCCCeeccCCCCCCCCC-CCchHHHHHHH
Q psy13475 251 RIILNKADQVKPEE-LMRVQGT-----LIWNISPLMSS-------------SEPPVMYSTSLWSNPYE-VGAPIRLLQAQ 310 (468)
Q Consensus 251 iiVlNK~D~v~~~e-l~~v~~~-----l~~~ls~~~~~-------------pe~p~vy~~s~w~~p~~-~~~~~~~~~~e 310 (468)
++|+||+|+....+ +...... ..+++|+..+. |+.|++|+.+ .. ++.+.+++.+|
T Consensus 121 ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~~-----~~~td~~~~~~~~e 195 (301)
T 1wf3_A 121 LLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPED-----YAKSDQTFGEWVAE 195 (301)
T ss_dssp EEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSCTT-----CCSBSSCHHHHHHH
T ss_pred EEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCCcc-----cccCCCCHHHHHHH
Confidence 99999999986544 3322211 23455655432 6677777765 55 77888887776
Q ss_pred --HHHHH----HHHHHHHHHHHHHHHHHhhhccceeeEEEEehhhHHhhccCCcccccChhhHHHHHHhCCC
Q psy13475 311 --EHAFL----RDLRNAIDKRVENKIASARRFAVRVRNHAKMVDCYLTTYYNHKTFFGNRKKVADDIIEHPQ 376 (468)
Q Consensus 311 --e~~l~----~eL~~~~~~~i~~~~~~~~~~~~~~~i~a~i~~~~v~~~~~~~~~~Gk~~~~~~~~~~~~~ 376 (468)
++.++ .|+|+++.+.++++..+.. .+++|+|.| ||++.+|+++++|++|+++|+|.....
T Consensus 196 ~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~---~~~~i~~~i---~ve~~~~k~iiig~~g~~lk~i~~~ar 261 (301)
T 1wf3_A 196 ILREEAMKRLWHEVPYAVATKVEEVAEREN---GVLYIKAIL---YVERPSQKAIVIGEGGRKIKEIGQATR 261 (301)
T ss_dssp HHHHHHHHTCCTTHHHHCEEEEEEEEEETT---TEEEEEEEE---EESSHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCceEEEEEEEEEecCC---CeEEEEEEE---EEeeCCceEEEEeCCchHHHHHHHHHH
Confidence 22232 3788988888888764322 368999999 999999999999999999998865553
No 4
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.92 E-value=3.7e-26 Score=228.37 Aligned_cols=227 Identities=19% Similarity=0.276 Sum_probs=162.1
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+.+.|+|+|++|+|||||+|+|+|.++++++.. +++|+++.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~---------------------------------------~~tTr~~~ 47 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRK---------------------------------------AQTTRHRI 47 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCC---------------------------------------SSCCSSCE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCC---------------------------------------CCcceeeE
Confidence 567899999999999999999999988765543 34555555
Q ss_pred EEeecCCCCCcceEEEeCCCCc-hhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEE
Q psy13475 174 RGLQLPHPLLEKINIVEIPGIL-EIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRI 252 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~-~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iii 252 (468)
.++..... .+++|+||||+. .....+.+. |...+..++..+|++++|+|++. ++.....+++.+...+.|+++
T Consensus 48 ~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~--~~~~~~~~l~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~~~~P~il 121 (301)
T 1ega_A 48 VGIHTEGA--YQAIYVDTPGLHMEEKRAINRL--MNKAASSSIGDVELVIFVVEGTR--WTPDDEMVLNKLREGKAPVIL 121 (301)
T ss_dssp EEEEEETT--EEEEEESSSSCCHHHHHHHHHH--HTCCTTSCCCCEEEEEEEEETTC--CCHHHHHHHHHHHSSSSCEEE
T ss_pred EEEEEECC--eeEEEEECcCCCccchhhHHHH--HHHHHHHHHhcCCEEEEEEeCCC--CCHHHHHHHHHHHhcCCCEEE
Confidence 55543232 679999999998 444333333 44556667899999999999976 677777888888877789999
Q ss_pred EEeCCCCCC-hHHHHHHh-------h-hhhhccccccCC-------------CCCCeeccCCCCCCCCCCCchHHHHHHH
Q psy13475 253 ILNKADQVK-PEELMRVQ-------G-TLIWNISPLMSS-------------SEPPVMYSTSLWSNPYEVGAPIRLLQAQ 310 (468)
Q Consensus 253 VlNK~D~v~-~~el~~v~-------~-~l~~~ls~~~~~-------------pe~p~vy~~s~w~~p~~~~~~~~~~~~e 310 (468)
|+||+|... .+.+.+.. + ...+++|+..+. |+.|++|+.+ ..++.+.+++.+|
T Consensus 122 vlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~~~-----~~~d~~~~~~~~e 196 (301)
T 1ega_A 122 AVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPED-----YITDRSQRFMASE 196 (301)
T ss_dssp EEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCSSCTT-----CCSCCSHHHHHHH
T ss_pred EEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCCCCcc-----ccCCCCHHHHHHH
Confidence 999999987 44332221 1 124566766554 6677777765 6677888877666
Q ss_pred --HHHHH----HHHHHHHHHHHHHHHHHhhhccceeeEEEEehhhHHhhccCCcccccChhhHHHHHHhCCC
Q psy13475 311 --EHAFL----RDLRNAIDKRVENKIASARRFAVRVRNHAKMVDCYLTTYYNHKTFFGNRKKVADDIIEHPQ 376 (468)
Q Consensus 311 --e~~l~----~eL~~~~~~~i~~~~~~~~~~~~~~~i~a~i~~~~v~~~~~~~~~~Gk~~~~~~~~~~~~~ 376 (468)
++.++ .|+|+++.+.++++.++. ...++|+|.| ||++.+||.+++|++|+++++|...-.
T Consensus 197 ~~re~l~~~l~~e~p~~~~v~i~~~~~~~---~~~~~i~~~i---~v~~~~~k~i~ig~~G~~~k~ig~~ar 262 (301)
T 1ega_A 197 IIREKLMRFLGAELPYSVTVEIERFVSNE---RGGYDINGLI---LVEREGQKKMVIGNKGAKIKTIGIEAR 262 (301)
T ss_dssp HHHHHHHHHHGGGCCTTEEEEEEEEECCS---SCSEEEEEEE---EESSHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEEEEEEEEecC---CCeEEEEEEE---EEEECCceEEEECCCcHHHHHHHHHHH
Confidence 22222 234445555565544321 1258899999 999999999999999999998865543
No 5
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.82 E-value=1.3e-20 Score=199.49 Aligned_cols=192 Identities=19% Similarity=0.179 Sum_probs=109.2
Q ss_pred HHHHHHHHhhhhcccCCC--------CCcchhhHHHHhhcCcchhH--HHHHHHHHHHHHHHHHHHHHhhhcchhhhhhc
Q psy13475 9 KIAQRLQTQKQEDIEIPD--------NLRDKRHVHGILKLDEEFKE--EEELLAKTIETTLKELKRLYDNAIKPLEITYK 78 (468)
Q Consensus 9 ~~~~~~q~~~~~~~~~~~--------~~~~~~~ie~~l~~~ee~~~--~d~~~~~~~~~v~~~l~~ly~~~~~ple~~~~ 78 (468)
..+|+.+|++|++|.++. +++.++++|+.|||+||+.+ ........+..+...+.++....-. .
T Consensus 154 t~~~~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~----~-- 227 (476)
T 3gee_A 154 TESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQH----G-- 227 (476)
T ss_dssp SHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHH----H--
T ss_pred CHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHh----h--
Confidence 457899999999999884 45678999999999987543 1223344455555555555432110 0
Q ss_pred cccccCCCCCCccccCCC-EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCc
Q psy13475 79 YRDLSNRHFADPEIFSKP-LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADW 157 (468)
Q Consensus 79 ~~~~~s~~l~d~~~~~~p-~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~ 157 (468)
...+.+ .|+|+|.+|+|||||+|+|++.+.++++..
T Consensus 228 ------------~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~------------------------------- 264 (476)
T 3gee_A 228 ------------RIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHM------------------------------- 264 (476)
T ss_dssp ------------HHHHHCEEEEEECCTTSSHHHHHHHCC-----------------------------------------
T ss_pred ------------HhhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCC-------------------------------
Confidence 011223 399999999999999999999887655443
Q ss_pred cccccccccccceeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCH---
Q psy13475 158 TFSGLQKFGQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGP--- 234 (468)
Q Consensus 158 ~f~~L~~fg~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~--- 234 (468)
++||++.......... ..+.||||||+.+....++.. ....+..++..+|++++|+|++. ..+.
T Consensus 265 --------~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~--gi~~~~~~~~~aD~vl~VvD~s~-~~s~~~~ 331 (476)
T 3gee_A 265 --------PGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHE--GIRRSRMKMAEADLILYLLDLGT-ERLDDEL 331 (476)
T ss_dssp ----------------CEEEEETT--EEEEEEC----------------------CCCSSCSEEEEEEETTT-CSSGGGH
T ss_pred --------CCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHH--HHHHHHhhcccCCEEEEEEECCC-Ccchhhh
Confidence 3444444333221122 579999999997754433332 23445667899999999999987 4454
Q ss_pred -hHHHHHHHHhcCCCcEEEEEeCCCCCChHH
Q psy13475 235 -ETEAILDQLKGREYQTRIILNKADQVKPEE 264 (468)
Q Consensus 235 -e~~~ll~~l~~~~~~iiiVlNK~D~v~~~e 264 (468)
.+..+++.+. +.|+++|+||+|+.....
T Consensus 332 ~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~ 360 (476)
T 3gee_A 332 TEIRELKAAHP--AAKFLTVANKLDRAANAD 360 (476)
T ss_dssp HHHHHHHHHCT--TSEEEEEEECTTSCTTTH
T ss_pred HHHHHHHHhcC--CCCEEEEEECcCCCCccc
Confidence 5556666665 579999999999986544
No 6
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.78 E-value=1.4e-19 Score=190.87 Aligned_cols=192 Identities=17% Similarity=0.189 Sum_probs=118.2
Q ss_pred HHHHHHHHhhhhcccCCC--------CCcchhhHHHHhhcCcchhHHH-HHHHHHHHHHHHHHHHHHhhhcchhhhhhcc
Q psy13475 9 KIAQRLQTQKQEDIEIPD--------NLRDKRHVHGILKLDEEFKEEE-ELLAKTIETTLKELKRLYDNAIKPLEITYKY 79 (468)
Q Consensus 9 ~~~~~~q~~~~~~~~~~~--------~~~~~~~ie~~l~~~ee~~~~d-~~~~~~~~~v~~~l~~ly~~~~~ple~~~~~ 79 (468)
..+|+.+|++|++|.++. ++..++++|+.|||+|+..+.+ ......+..+...++++.... +.
T Consensus 146 t~~~~~~a~~~l~g~~~~~~~~~r~~l~~~~a~iEa~iDf~ed~~~~~~~~~~~~i~~l~~~l~~~~~~~----~~---- 217 (462)
T 3geh_A 146 SPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFEEDLPPLDDEAIISDIENIAAEISQLLATK----DK---- 217 (462)
T ss_dssp SHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHTTSSSSSCCCCTTTHHHHHHHHHHHHHHHTTTH----HH----
T ss_pred CHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhccccccCChhhHHHHHHHHHHHHHHHHHHHHHh----hh----
Confidence 457899999999999984 4577899999999998433211 123344555555555543221 11
Q ss_pred ccccCCCCCCccccCCC-EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcc
Q psy13475 80 RDLSNRHFADPEIFSKP-LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWT 158 (468)
Q Consensus 80 ~~~~s~~l~d~~~~~~p-~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~ 158 (468)
+...+.+ .|+++|.+|+|||||+|+|++.+.++++..
T Consensus 218 ----------~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-------------------------------- 255 (462)
T 3geh_A 218 ----------GELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDL-------------------------------- 255 (462)
T ss_dssp ----------HHHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCC--------------------------------
T ss_pred ----------hhhhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCC--------------------------------
Confidence 0011223 399999999999999999999887655443
Q ss_pred ccccccccccceeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHH
Q psy13475 159 FSGLQKFGQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEA 238 (468)
Q Consensus 159 f~~L~~fg~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ 238 (468)
+.+|++......... ...+.||||||+.+....++.. ..+.+...+..+|++++|+|++. ..+.....
T Consensus 256 -------~gtT~d~~~~~i~~~--g~~v~liDT~G~~~~~~~ve~~--gi~~~~~~~~~aD~vl~VvD~s~-~~~~~~~~ 323 (462)
T 3geh_A 256 -------PGTTRDVVESQLVVG--GIPVQVLDTAGIRETSDQVEKI--GVERSRQAANTADLVLLTIDAAT-GWTTGDQE 323 (462)
T ss_dssp -------TTCCHHHHHHEEEET--TEEEEECC----------------------CCCCSCSEEEEEEETTT-CSCHHHHH
T ss_pred -------CCeeEEEEEEEEEEC--CEEEEEEECCccccchhHHHHH--HHHHHhhhhhcCCEEEEEeccCC-CCCHHHHH
Confidence 233333222111112 2568999999997754433332 23445667889999999999987 56777777
Q ss_pred HHHHHhcCCCcEEEEEeCCCCCChHH
Q psy13475 239 ILDQLKGREYQTRIILNKADQVKPEE 264 (468)
Q Consensus 239 ll~~l~~~~~~iiiVlNK~D~v~~~e 264 (468)
+++.+.. .|+++|+||+|+.....
T Consensus 324 i~~~l~~--~piivV~NK~Dl~~~~~ 347 (462)
T 3geh_A 324 IYEQVKH--RPLILVMNKIDLVEKQL 347 (462)
T ss_dssp HHHHHTT--SCEEEEEECTTSSCGGG
T ss_pred HHHhccC--CcEEEEEECCCCCcchh
Confidence 8877754 69999999999986543
No 7
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.78 E-value=7e-19 Score=186.45 Aligned_cols=186 Identities=20% Similarity=0.229 Sum_probs=125.6
Q ss_pred HHHHHHHhhhhcccCCCC--------CcchhhHHHHhhcCcchhH--HHHHHHHHHHHHHHHHHHHHhhhcchhhhhhcc
Q psy13475 10 IAQRLQTQKQEDIEIPDN--------LRDKRHVHGILKLDEEFKE--EEELLAKTIETTLKELKRLYDNAIKPLEITYKY 79 (468)
Q Consensus 10 ~~~~~q~~~~~~~~~~~~--------~~~~~~ie~~l~~~ee~~~--~d~~~~~~~~~v~~~l~~ly~~~~~ple~~~~~ 79 (468)
..|+.++.+|++|.++.. ++.++++|+.+||+++ .+ ... ....+..+..+|+.+.... +.
T Consensus 167 ~~~~~~a~~~l~g~l~~~~~~~r~~l~~~~~~ie~~idf~ee-i~~~~~~-i~~~~~~l~~eL~~l~~~~----~~---- 236 (482)
T 1xzp_A 167 ETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDE-IETNTGE-VVTRLERIKEKLTEELKKA----DA---- 236 (482)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHSTTT-CCCCHHH-HHHHHHHHHHHHHHHHHHH----HH----
T ss_pred HHHHHHHHHhcchhHhHHHHHHHHHHHHHHHHhhhcCCCCcc-ccchHHH-HHHHHHHHHHHHHHHHHhh----hh----
Confidence 457889999999999853 3577899999999996 22 111 4444555555555554321 00
Q ss_pred ccccCCCCCCccccCCC-EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcc
Q psy13475 80 RDLSNRHFADPEIFSKP-LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWT 158 (468)
Q Consensus 80 ~~~~s~~l~d~~~~~~p-~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~ 158 (468)
+...+.+ .|+++|.||||||||+|+|++.+.++++..
T Consensus 237 ----------~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~-------------------------------- 274 (482)
T 1xzp_A 237 ----------GILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDI-------------------------------- 274 (482)
T ss_dssp ----------HHHHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCS--------------------------------
T ss_pred ----------hhhccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCC--------------------------------
Confidence 0011222 599999999999999999999887655544
Q ss_pred ccccccccccceeeeEEeecCCCCCcceEEEeCCCCc-hhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH
Q psy13475 159 FSGLQKFGQGLLDRLRGLQLPHPLLEKINIVEIPGIL-EIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE 237 (468)
Q Consensus 159 f~~L~~fg~tt~~~i~~~~~~~~~l~~i~lIDTPGi~-~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~ 237 (468)
+.||++......... ...+.|+||||+. .....++.. ....+..++..+|++|+|+|++. ..+.+..
T Consensus 275 -------~gTT~d~~~~~i~~~--g~~~~l~DTaG~~~~~~~~ve~~--gi~~~~~~~~~aD~vl~VvD~s~-~~s~~~~ 342 (482)
T 1xzp_A 275 -------PGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERL--GIERTLQEIEKADIVLFVLDASS-PLDEEDR 342 (482)
T ss_dssp -------SCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCC--CHHHHHHHHHHCSEEEEEEETTS-CCCHHHH
T ss_pred -------CCeeeeeEEEEEecC--CeEEEEEECCCccccchhhHHHH--HHHHHHHHhhcccEEEEEecCCC-CCCHHHH
Confidence 234444333222112 2569999999998 544333322 23456677899999999999987 4466666
Q ss_pred HHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 238 AILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 238 ~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
++++.+. +.|+++|+||+|+..
T Consensus 343 ~il~~l~--~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 343 KILERIK--NKRYLVVINKVDVVE 364 (482)
T ss_dssp HHHHHHT--TSSEEEEEEECSSCC
T ss_pred HHHHHhc--CCCEEEEEECccccc
Confidence 6776663 579999999999974
No 8
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.72 E-value=3.6e-17 Score=180.77 Aligned_cols=230 Identities=16% Similarity=0.182 Sum_probs=136.5
Q ss_pred ccCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccc-cCc---ccccc-----
Q psy13475 92 IFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLA-ADW---TFSGL----- 162 (468)
Q Consensus 92 ~~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~-~D~---~f~~L----- 162 (468)
....|.|+|+|.+|+|||||||+|+|.++. +.|..++|.+++++......... +..+. .+. +|..+
T Consensus 48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~L----P~g~g~~Tr~Pl~l~l~~~~~~~-~~~l~~~~~~~~~~~~v~~~I~ 122 (772)
T 3zvr_A 48 DLDLPQIAVVGGQSAGKSSVLENFVGRDFL----PRGSGIVTRRPLVLQLVNSTTEY-AEFLHCKGKKFTDFEEVRLEIE 122 (772)
T ss_dssp GGCCSEEEEEECTTTCHHHHHHHHHSSCCS----CCSSSCSCSSCEEEEEEECSSCE-EECSTTTTCCBCCHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHhCCCcc----CcCCccccccceEEEeecCCcch-hheeccCCcccCCHHHHHHHHH
Confidence 346789999999999999999999999884 36777999998877543322110 00000 000 11111
Q ss_pred ------ccccccceeeeEEeecCCCCCcceEEEeCCCCchhh-----hhhhhccchhHHHHHhh-cccCEEEEEEcCCCC
Q psy13475 163 ------QKFGQGLLDRLRGLQLPHPLLEKINIVEIPGILEIR-----KQVERQFPFNDACQWFI-DRADIIFLVYDPSKL 230 (468)
Q Consensus 163 ------~~fg~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~-----~~~~r~~d~~~~~~~~~-~~aDlIllV~Da~~~ 230 (468)
...+.++......+.+..+...+++||||||+.... ...... +.+.+..++ ..+|+|++|+|++.
T Consensus 123 ~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~--i~~lv~~yi~~~aDlIL~VVDAs~- 199 (772)
T 3zvr_A 123 AETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQ--IRDMLMQFVTKENCLILAVSPANS- 199 (772)
T ss_dssp HHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHH--HHHHHHHHHTSTTEEEEEEEETTS-
T ss_pred HHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHH--HHHHHHHHHhcCCcEEEEEEcCCC-
Confidence 111222222223333334555789999999998732 001111 334455554 68999999999987
Q ss_pred CCCHhHH-HHHHHHhcCCCcEEEEEeCCCCCChHHH-HHHh----------hhhhhccccccCCCCC------C---eec
Q psy13475 231 DVGPETE-AILDQLKGREYQTRIILNKADQVKPEEL-MRVQ----------GTLIWNISPLMSSSEP------P---VMY 289 (468)
Q Consensus 231 ~i~~e~~-~ll~~l~~~~~~iiiVlNK~D~v~~~el-~~v~----------~~l~~~ls~~~~~pe~------p---~vy 289 (468)
++..++. .+++.+...+.|+++|+||+|+++.... ..+. ...+.++|+..+.--. . .+|
T Consensus 200 ~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ff 279 (772)
T 3zvr_A 200 DLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF 279 (772)
T ss_dssp CSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhc
Confidence 5555555 7888898888999999999999865331 1111 1123456665554100 0 011
Q ss_pred c-CCCCCCCCCCCchHHHHHHH---HHH---HHHHHHH----------HHHHHHHHHHH
Q psy13475 290 S-TSLWSNPYEVGAPIRLLQAQ---EHA---FLRDLRN----------AIDKRVENKIA 331 (468)
Q Consensus 290 ~-~s~w~~p~~~~~~~~~~~~e---e~~---l~~eL~~----------~~~~~i~~~~~ 331 (468)
+ +..|+ ..++.+.+++.+| ++. +.+|||+ ++.+.++++..
T Consensus 280 pe~P~yd--~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~ 336 (772)
T 3zvr_A 280 LSHPSYR--HLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKN 336 (772)
T ss_dssp HHCTTTG--GGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchh--hhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCC
Confidence 1 11232 3455666666666 222 2347777 78888888765
No 9
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.69 E-value=3.7e-17 Score=180.58 Aligned_cols=153 Identities=23% Similarity=0.383 Sum_probs=103.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccc----cCcccccCccccc-----------
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTIL----DGTQLAADWTFSG----------- 161 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i----~G~~l~~D~~f~~----------- 161 (468)
.|+|+|.+|+|||||||+|+|.++.+ +++.|+|.+++.+.+|+..... +|... ...++..
T Consensus 71 ~V~VvG~~naGKSSLlNaLlg~~~~~----v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~-~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 71 RLLVLGDMKRGKSTFLNALIGENLLP----SDVNPCTAVLTVLRYGPEKKVTIHFNDGKSP-QQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp EEEEECCTTSCHHHHHHHHHTSSCSC----CCCCTTTCCCEEEEECSSCEEEEEESSSCCC-CEEEHHHHHHHSCCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC----CCCCCCccceEEEEeCCCCeEEEEEcCCCcc-cccChhhhhhhhcCCHHH
Confidence 59999999999999999999998854 6678999999999999765421 22210 0001100
Q ss_pred ---cccccccc--eeeeEEeecCCCCC-cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHh
Q psy13475 162 ---LQKFGQGL--LDRLRGLQLPHPLL-EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPE 235 (468)
Q Consensus 162 ---L~~fg~tt--~~~i~~~~~~~~~l-~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e 235 (468)
+..-+... .-....+..|.+.+ .+++||||||+.+... ....+..++..+|++|+|+|++. +.+..
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-------~~~~~~~~i~~aD~vL~Vvda~~-~~s~~ 217 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-------RNELSLGYVNNCHAILFVMRASQ-PCTLG 217 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-------CHHHHTHHHHSSSEEEEEEETTS-TTCHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-------HHHHHHHHHHhCCEEEEEEeCCC-ccchh
Confidence 10000000 01122344455443 4799999999987531 34567778899999999999987 55666
Q ss_pred HHHHH-HHHhcCCCcEEEEEeCCCCCCh
Q psy13475 236 TEAIL-DQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 236 ~~~ll-~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
....+ +.+...+.|+++|+||+|+...
T Consensus 218 e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 218 ERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 65555 4566667799999999998744
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.67 E-value=2.1e-16 Score=148.52 Aligned_cols=132 Identities=15% Similarity=0.223 Sum_probs=88.6
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCc-ccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNE-YSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~-~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
..+.|+|+|.+|+|||||+|+|+|.+ ++.++.. | +++...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~----~-----------------------------------~~t~~~ 68 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKT----P-----------------------------------GRTQHI 68 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCC----C-----------------------------------CSCCCE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCC----C-----------------------------------Ccccce
Confidence 45679999999999999999999987 3333222 1 122221
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhhhh--hhhccchhHHHHHhh---cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIRKQ--VERQFPFNDACQWFI---DRADIIFLVYDPSKLDVGPETEAILDQLKGRE 247 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~~~--~~r~~d~~~~~~~~~---~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~ 247 (468)
.. ..........+.||||||+...... .... +......++ ..+|++++|+|++. .++.....++..+...+
T Consensus 69 ~~-~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~l~~~~ 144 (223)
T 4dhe_A 69 NY-FSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH--WEQLLSSYLQTRPQLCGMILMMDARR-PLTELDRRMIEWFAPTG 144 (223)
T ss_dssp EE-EEESCTTSCSEEEEECCCCCSSCCCSTHHHH--HHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHGGGC
T ss_pred EE-EEecCCCCCcEEEEcCCCCCcccCChhhHHH--HHHHHHHHHhcCcCcCEEEEEEeCCC-CCCHHHHHHHHHHHhcC
Confidence 11 1111122367999999998754211 1111 223333444 44889999999987 56777888888888878
Q ss_pred CcEEEEEeCCCCCChHHHHHH
Q psy13475 248 YQTRIILNKADQVKPEELMRV 268 (468)
Q Consensus 248 ~~iiiVlNK~D~v~~~el~~v 268 (468)
.|+++|+||+|+.+..++...
T Consensus 145 ~p~i~v~nK~Dl~~~~~~~~~ 165 (223)
T 4dhe_A 145 KPIHSLLTKCDKLTRQESINA 165 (223)
T ss_dssp CCEEEEEECGGGSCHHHHHHH
T ss_pred CCEEEEEeccccCChhhHHHH
Confidence 899999999999987654443
No 11
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.66 E-value=2.2e-16 Score=156.98 Aligned_cols=161 Identities=18% Similarity=0.347 Sum_probs=91.5
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCcc--------------ccCcccccCccc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTI--------------LDGTQLAADWTF 159 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~--------------i~G~~l~~D~~f 159 (468)
..|.|+|+|.+|+|||||+|+|+|.++.+ .|..++|...+.+........ .+|... ..|
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp----~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 95 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLP----RGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMF---YDF 95 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCC----C--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCB---CCT
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCC----CCCCceeeeeEEEEEEeCCCcccccchhhhhhhhccccccc---CCH
Confidence 56889999999999999999999998742 444555655543322211100 000000 011
Q ss_pred cccccc-----------cccceeeeEEeecCCCCCcceEEEeCCCCchhhh-----hhhhccchhHHHHHhhcccCEEEE
Q psy13475 160 SGLQKF-----------GQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRK-----QVERQFPFNDACQWFIDRADIIFL 223 (468)
Q Consensus 160 ~~L~~f-----------g~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~-----~~~r~~d~~~~~~~~~~~aDlIll 223 (468)
..+... +.++......+.+..+...+++||||||+..... ...+. +...+..++..+|++++
T Consensus 96 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~iil 173 (315)
T 1jwy_B 96 SEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQ--IRRMVMAYIKKQNAIIV 173 (315)
T ss_dssp HHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHH--HHHHHHHHHHSTTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHH--HHHHHHHHHcCCCeEEE
Confidence 111000 0011111111222233347899999999975321 12233 56778888999999999
Q ss_pred EEcCCCCCCCHh-HHHHHHHHhcCCCcEEEEEeCCCCCChH
Q psy13475 224 VYDPSKLDVGPE-TEAILDQLKGREYQTRIILNKADQVKPE 263 (468)
Q Consensus 224 V~Da~~~~i~~e-~~~ll~~l~~~~~~iiiVlNK~D~v~~~ 263 (468)
|+|+...++... ...+++.+...+.|+++|+||+|+.+..
T Consensus 174 vvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 174 AVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (315)
T ss_dssp EEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred EEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcc
Confidence 999743344433 3477888887788999999999998543
No 12
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.64 E-value=4.4e-16 Score=163.03 Aligned_cols=122 Identities=20% Similarity=0.289 Sum_probs=83.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
|.|+++|.||||||||+|+|+|...++++.. +++|++...+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~---------------------------------------~g~T~d~~~~ 42 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDE---------------------------------------EGVTRDPVQD 42 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------------------------------------------CCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCC---------------------------------------CCCccceeeE
Confidence 6799999999999999999999887655443 3566665554
Q ss_pred eecCCCCCcceEEEeCCCCchhh-hhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIR-KQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIIL 254 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~-~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVl 254 (468)
...... ..+.+|||||+.... ...+.. +...+..+++.||++++|+|+.. +++..+..+.+.++..+.|+++|+
T Consensus 43 ~~~~~~--~~~~l~DT~G~~~~~~~~~~~~--~~~~~~~~~~~ad~il~V~D~~~-~~~~~d~~i~~~l~~~~~p~ilv~ 117 (439)
T 1mky_A 43 TVEWYG--KTFKLVDTCGVFDNPQDIISQK--MKEVTLNMIREADLVLFVVDGKR-GITKEDESLADFLRKSTVDTILVA 117 (439)
T ss_dssp EEEETT--EEEEEEECTTTTSSGGGCCCHH--HHHHHHHHHTTCSEEEEEEETTT-CCCHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEECC--eEEEEEECCCccccccchHHHH--HHHHHHHHHHhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCEEEEE
Confidence 432222 579999999987532 112233 45667778999999999999987 667777777777776678999999
Q ss_pred eCCCCCC
Q psy13475 255 NKADQVK 261 (468)
Q Consensus 255 NK~D~v~ 261 (468)
||+|+..
T Consensus 118 NK~D~~~ 124 (439)
T 1mky_A 118 NKAENLR 124 (439)
T ss_dssp ESCCSHH
T ss_pred eCCCCcc
Confidence 9999753
No 13
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.63 E-value=5.8e-16 Score=161.99 Aligned_cols=124 Identities=21% Similarity=0.197 Sum_probs=81.7
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
.|.|+++|.+|||||||+|+|+|...++++.. +++|++...
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~---------------------------------------~g~T~d~~~ 43 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDT---------------------------------------PGVTRDRIY 43 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC--------------------------------------------------CEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCC---------------------------------------CCCccceEE
Confidence 46899999999999999999999887655443 356666555
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIIL 254 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVl 254 (468)
+..... ...+.+|||||+.......... +...+..++..||++++|+|+.. +.+..+..+.+.++..+.|+++|+
T Consensus 44 ~~~~~~--~~~~~l~DT~G~~~~~~~~~~~--~~~~~~~~~~~ad~il~vvD~~~-~~~~~d~~~~~~l~~~~~pvilv~ 118 (436)
T 2hjg_A 44 SSAEWL--NYDFNLIDTGGIDIGDEPFLAQ--IRQQAEIAMDEADVIIFMVNGRE-GVTAADEEVAKILYRTKKPVVLAV 118 (436)
T ss_dssp EECTTC--SSCCEEEC---------CHHHH--HHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHTTCCSCEEEEE
T ss_pred EEEEEC--CceEEEEECCCCCCcchhHHHH--HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEE
Confidence 444222 2579999999997432223333 55667778899999999999987 677777778888888889999999
Q ss_pred eCCCCCCh
Q psy13475 255 NKADQVKP 262 (468)
Q Consensus 255 NK~D~v~~ 262 (468)
||+|+...
T Consensus 119 NK~D~~~~ 126 (436)
T 2hjg_A 119 NKLDNTEM 126 (436)
T ss_dssp ECCCC---
T ss_pred ECccCccc
Confidence 99998753
No 14
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.63 E-value=3.4e-15 Score=136.85 Aligned_cols=128 Identities=18% Similarity=0.243 Sum_probs=82.0
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+.+.|+|+|.+|+|||||+|+|++.++.. ..++.| +++....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~-----------------------------------~~t~~~~ 63 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLA---RTSSKP-----------------------------------GKTQTLN 63 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC---------------------------------------------------CCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc---ccCCCC-----------------------------------CceeeEE
Confidence 45679999999999999999999987421 111111 1121111
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhh--hhccchhHHHHHhhccc---CEEEEEEcCCCCCCCHhHHHHHHHHhcCCC
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQV--ERQFPFNDACQWFIDRA---DIIFLVYDPSKLDVGPETEAILDQLKGREY 248 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~--~r~~d~~~~~~~~~~~a---DlIllV~Da~~~~i~~e~~~ll~~l~~~~~ 248 (468)
. ... . ..+.||||||+....... ... +......++..+ |++++|+|++. ..+.....+++.+...+.
T Consensus 64 ~-~~~--~--~~~~l~Dt~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~ 135 (195)
T 1svi_A 64 F-YII--N--DELHFVDVPGYGFAKVSKSEREA--WGRMIETYITTREELKAVVQIVDLRH-APSNDDVQMYEFLKYYGI 135 (195)
T ss_dssp E-EEE--T--TTEEEEECCCBCCCSSCHHHHHH--HHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHTTC
T ss_pred E-EEE--C--CcEEEEECCCCCccccCHHHHHH--HHHHHHHHHhhhhcCCEEEEEEECCC-CCCHHHHHHHHHHHHcCC
Confidence 1 111 1 369999999986542211 111 334455555555 99999999987 567766677777777788
Q ss_pred cEEEEEeCCCCCChHHHHH
Q psy13475 249 QTRIILNKADQVKPEELMR 267 (468)
Q Consensus 249 ~iiiVlNK~D~v~~~el~~ 267 (468)
|+++|+||+|+.+..++..
T Consensus 136 p~i~v~nK~Dl~~~~~~~~ 154 (195)
T 1svi_A 136 PVIVIATKADKIPKGKWDK 154 (195)
T ss_dssp CEEEEEECGGGSCGGGHHH
T ss_pred CEEEEEECcccCChHHHHH
Confidence 9999999999987655443
No 15
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.63 E-value=1.1e-15 Score=155.81 Aligned_cols=165 Identities=16% Similarity=0.262 Sum_probs=103.4
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCcccc--Ccccc-cCcccccccc-----
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILD--GTQLA-ADWTFSGLQK----- 164 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~--G~~l~-~D~~f~~L~~----- 164 (468)
..-|.|+|+|.+|||||||+|+|+|.++. +.|..++|.+.+.+.......... +.... ....|..+..
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~~~l----p~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i 107 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFL----PRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEI 107 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTSCCS----CCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHH
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCCCcC----CCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHH
Confidence 35679999999999999999999999884 356667887777665533221100 00000 0001111100
Q ss_pred ---------ccccceeeeEEeecCCCCCcceEEEeCCCCchhhh-----hhhhccchhHHHHHhhcccCEEEEEEcCCCC
Q psy13475 165 ---------FGQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRK-----QVERQFPFNDACQWFIDRADIIFLVYDPSKL 230 (468)
Q Consensus 165 ---------fg~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~-----~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~ 230 (468)
.+..+......+.+..+...+++||||||+..... ...+. +...+..++.++|+|++|+|+...
T Consensus 108 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~--~~~~~~~~i~~~d~iilvv~~~~~ 185 (360)
T 3t34_A 108 QDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKD--IENMVRSYIEKPNCIILAISPANQ 185 (360)
T ss_dssp HHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHH--HHHHHHHHHHSSSEEEEEEEETTS
T ss_pred HHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHH--HHHHHHHHhhcCCeEEEEeecccC
Confidence 01122222222222234456899999999986421 12222 456788889999999999987543
Q ss_pred CC-CHhHHHHHHHHhcCCCcEEEEEeCCCCCChH
Q psy13475 231 DV-GPETEAILDQLKGREYQTRIILNKADQVKPE 263 (468)
Q Consensus 231 ~i-~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~~ 263 (468)
+. ..++..++..+...+.|+++|+||+|+++..
T Consensus 186 ~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 186 DLATSDAIKISREVDPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp CGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTT
T ss_pred CcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCc
Confidence 32 2445677777777778999999999998643
No 16
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.63 E-value=7.6e-16 Score=162.01 Aligned_cols=127 Identities=21% Similarity=0.208 Sum_probs=84.7
Q ss_pred ccCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCcccccccccccccee
Q psy13475 92 IFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLD 171 (468)
Q Consensus 92 ~~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~ 171 (468)
..+.|.|+|+|.+|||||||+|+|+|..+++++.. ++++++
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~---------------------------------------~g~t~~ 60 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDT---------------------------------------PGVTRD 60 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC--------------------------------------------------
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC---------------------------------------CCccee
Confidence 34678999999999999999999999887654433 345555
Q ss_pred eeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEE
Q psy13475 172 RLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTR 251 (468)
Q Consensus 172 ~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ii 251 (468)
........ ....+.+|||||+.......++. +...+..++..||++|+|+|+.. +++..+..+.+.++..+.|++
T Consensus 61 ~~~~~~~~--~~~~~~liDT~G~~~~~~~~~~~--~~~~~~~~~~~ad~il~VvD~~~-~~~~~d~~l~~~l~~~~~pvi 135 (456)
T 4dcu_A 61 RIYSSAEW--LNYDFNLIDTGGIDIGDEPFLAQ--IRQQAEIAMDEADVIIFMVNGRE-GVTAADEEVAKILYRTKKPVV 135 (456)
T ss_dssp CEEEECTT--CSSCCEEECCCC------CCHHH--HHHHHHHHHHHCSEEEEEEESSS-CSCHHHHHHHHHHTTCCSCEE
T ss_pred EEEEEEEE--CCceEEEEECCCCCCcchHHHHH--HHHHHHhhHhhCCEEEEEEeCCC-CCChHHHHHHHHHHHcCCCEE
Confidence 54444322 23679999999987543333333 55667788899999999999987 678888888899988889999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|+||+|+.+.
T Consensus 136 lV~NK~D~~~~ 146 (456)
T 4dcu_A 136 LAVNKLDNTEM 146 (456)
T ss_dssp EEEECC-----
T ss_pred EEEECccchhh
Confidence 99999998743
No 17
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.62 E-value=3.5e-15 Score=136.15 Aligned_cols=129 Identities=22% Similarity=0.209 Sum_probs=84.6
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
...+.|+++|.+|+|||||+|+|++.+...++.. + +++...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----~-----------------------------------~~t~~~ 61 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKT----P-----------------------------------GKTRSI 61 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSS----C-----------------------------------CCCCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCC----C-----------------------------------CCccCe
Confidence 3566899999999999999999999875432222 1 111111
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhh---cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFI---DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ 249 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~---~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ 249 (468)
..... ..++.++||||+............+......++ ..+|++++|+|++. ..+.....+++.+...+.|
T Consensus 62 ~~~~~-----~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p 135 (195)
T 3pqc_A 62 NFYLV-----NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRI-PPQDSDLMMVEWMKSLNIP 135 (195)
T ss_dssp EEEEE-----TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHTTCC
T ss_pred EEEEE-----CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCC-CCCHHHHHHHHHHHHcCCC
Confidence 11111 146899999997643211000000223333444 44599999999977 5677777778888877899
Q ss_pred EEEEEeCCCCCChHHHH
Q psy13475 250 TRIILNKADQVKPEELM 266 (468)
Q Consensus 250 iiiVlNK~D~v~~~el~ 266 (468)
+++|+||+|+.+.++..
T Consensus 136 ~i~v~nK~Dl~~~~~~~ 152 (195)
T 3pqc_A 136 FTIVLTKMDKVKMSERA 152 (195)
T ss_dssp EEEEEECGGGSCGGGHH
T ss_pred EEEEEEChhcCChHHHH
Confidence 99999999998765443
No 18
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.62 E-value=3e-15 Score=147.39 Aligned_cols=160 Identities=18% Similarity=0.332 Sum_probs=90.0
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEe--cCCCCcc-c---cCcccccCccccccc----
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILS--WGESPTI-L---DGTQLAADWTFSGLQ---- 163 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~--~g~~~~~-i---~G~~l~~D~~f~~L~---- 163 (468)
..|.|+|+|.+|||||||+|+|+|.++.+ .+..++|...+.+. ++..+.. . .|.... .+..+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~----~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~t---t~~~~~~~~~ 97 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLP----RGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFT---DFEEVRLEIE 97 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSC----CCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBC---CHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCC----CCCCcccccceEEEEecCCcccchhhhcCCcccC---CHHHHHHHHH
Confidence 56789999999999999999999998752 22223333333221 1111000 0 010000 000000
Q ss_pred ----cc-c--ccceeeeEEeecCCCCCcceEEEeCCCCchhh-----hhhhhccchhHHHHHhhcccCEEE-EEEcCCCC
Q psy13475 164 ----KF-G--QGLLDRLRGLQLPHPLLEKINIVEIPGILEIR-----KQVERQFPFNDACQWFIDRADIIF-LVYDPSKL 230 (468)
Q Consensus 164 ----~f-g--~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~-----~~~~r~~d~~~~~~~~~~~aDlIl-lV~Da~~~ 230 (468)
.. | ..+......+.+..+...+++||||||+.... ....+. +...+..++..++.++ +|+|++.
T Consensus 98 ~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~il~v~d~~~- 174 (299)
T 2aka_B 98 AETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQ--IRDMLMQFVTKENCLILAVSPANS- 174 (299)
T ss_dssp HHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHH--HHHHHHHHHTSTTEEEEEEEESSS-
T ss_pred HHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHH--HHHHHHHHHcCCCeEEEEEecCCc-
Confidence 00 0 00100111111112223689999999997532 111112 4566777888888665 7999976
Q ss_pred CCCHhH-HHHHHHHhcCCCcEEEEEeCCCCCChH
Q psy13475 231 DVGPET-EAILDQLKGREYQTRIILNKADQVKPE 263 (468)
Q Consensus 231 ~i~~e~-~~ll~~l~~~~~~iiiVlNK~D~v~~~ 263 (468)
+++... ..+++.+...+.|+++|+||+|+.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 175 DLANSDALKIAKEVDPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp CGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred chhhhHHHHHHHHhCCCCCeEEEEEEccccCCCC
Confidence 455444 357778877788999999999998643
No 19
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.59 E-value=1.9e-15 Score=147.33 Aligned_cols=122 Identities=18% Similarity=0.141 Sum_probs=82.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
|.|+++|.+|+|||||+|+|+|.... ++.. +++|.+...+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~-v~~~---------------------------------------pg~Tv~~~~~ 41 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR-VGNW---------------------------------------PGVTVEKKTG 41 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE-EEEC---------------------------------------TTSSSEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-ccCC---------------------------------------CCceEEEEEE
Confidence 57999999999999999999998642 2222 2344443333
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhh--cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFI--DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~--~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
...... ..+.||||||+.+..........-..+++.++ ..+|++++|+|++. .+....+..++...+.|+++|
T Consensus 42 ~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~---~~~~~~l~~~l~~~~~pvilv 116 (256)
T 3iby_A 42 EFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH---LERHLYLTSQLFELGKPVVVA 116 (256)
T ss_dssp EEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG---HHHHHHHHHHHTTSCSCEEEE
T ss_pred EEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC---chhHHHHHHHHHHcCCCEEEE
Confidence 332122 47999999999764321000000112345555 89999999999986 345566778888888999999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+...
T Consensus 117 ~NK~Dl~~~ 125 (256)
T 3iby_A 117 LNMMDIAEH 125 (256)
T ss_dssp EECHHHHHH
T ss_pred EEChhcCCc
Confidence 999998643
No 20
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.58 E-value=3.8e-15 Score=131.72 Aligned_cols=121 Identities=18% Similarity=0.263 Sum_probs=79.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
+.|+++|.+|+|||||+|+|++.....++.. | .++.+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----~-----------------------------------~~~~~~~~~ 42 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADV----P-----------------------------------GVTRDLKEG 42 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC--------------------------------------------------CCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCC----C-----------------------------------CceecceEE
Confidence 4699999999999999999999875422211 1 111111111
Q ss_pred -eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEE
Q psy13475 176 -LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIIL 254 (468)
Q Consensus 176 -~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVl 254 (468)
... .. ..+.++||||...... .... +......++..+|++++|+|++. ..+.....+.+.+.....|+++|+
T Consensus 43 ~~~~-~~--~~~~l~Dt~G~~~~~~-~~~~--~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~p~ilv~ 115 (161)
T 2dyk_A 43 VVET-DR--GRFLLVDTGGLWSGDK-WEKK--IQEKVDRALEDAEVVLFAVDGRA-ELTQADYEVAEYLRRKGKPVILVA 115 (161)
T ss_dssp EEEE-TT--EEEEEEECGGGCSSSS-CCHH--HHHHHHHHTTTCSEEEEEEESSS-CCCHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEe-CC--ceEEEEECCCCCCccc-hHHH--HHHHHHHHHHhCCEEEEEEECCC-cccHhHHHHHHHHHhcCCCEEEEE
Confidence 111 11 4689999999875321 1111 33445667899999999999987 456655566666666678999999
Q ss_pred eCCCCCCh
Q psy13475 255 NKADQVKP 262 (468)
Q Consensus 255 NK~D~v~~ 262 (468)
||+|+.+.
T Consensus 116 nK~Dl~~~ 123 (161)
T 2dyk_A 116 TKVDDPKH 123 (161)
T ss_dssp ECCCSGGG
T ss_pred ECcccccc
Confidence 99998754
No 21
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.58 E-value=3.2e-15 Score=144.70 Aligned_cols=121 Identities=14% Similarity=0.145 Sum_probs=78.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|||||||+|+|+|.+..+++.. +. .+|+......
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~~~~~~~--~~------------------------------------~~T~~~~~~~ 64 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRRFFSRLG--AT------------------------------------SVTRACTTGS 64 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCCC-----------------------------------------------CCSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccccCC--CC------------------------------------CccccEEEEE
Confidence 499999999999999999999987643321 11 1222222222
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHh----hcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC------
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWF----IDRADIIFLVYDPSKLDVGPETEAILDQLKGR------ 246 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~----~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~------ 246 (468)
.... ...++||||||+.+........ +...+... ...+|++|+|+|++. ++..+..+++.+...
T Consensus 65 ~~~~--~~~i~liDTPG~~~~~~~~~~~--~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~~ 138 (247)
T 3lxw_A 65 RRWD--KCHVEVVDTPDIFSSQVSKTDP--GCEERGHCYLLSAPGPHALLLVTQLGR--FTAQDQQAVRQVRDMFGEDVL 138 (247)
T ss_dssp EEET--TEEEEEEECCSCSSTTHHHHST--TSHHHHHHHHHHTTCCSEEEEEEETTB--CCHHHHHHHHHHHHHHCGGGG
T ss_pred EEEC--CcEEEEEECCCCCCCCCCcHHH--HHHHHHHHHHhcCCCCCEEEEEEeCCC--CCHHHHHHHHHHHHHhChhhh
Confidence 2112 2679999999998654443111 22223222 489999999999985 466666666665542
Q ss_pred CCcEEEEEeCCCCCC
Q psy13475 247 EYQTRIILNKADQVK 261 (468)
Q Consensus 247 ~~~iiiVlNK~D~v~ 261 (468)
..|+++|.||+|+.+
T Consensus 139 ~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 139 KWMVIVFTRKEDLAG 153 (247)
T ss_dssp GGEEEEEECGGGGTT
T ss_pred ccEEEEEEchHhcCC
Confidence 568999999999864
No 22
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.58 E-value=2.9e-15 Score=136.15 Aligned_cols=120 Identities=23% Similarity=0.220 Sum_probs=75.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|.+...+.++.. +.++++.....
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~~~~~~~~---------------------------------------~~~t~~~~~~~ 46 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDI---------------------------------------AGTTRDVLREH 46 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCSCCCSS---------------------------------------TTCCCSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceeeCC---------------------------------------CCceeceeeEE
Confidence 499999999999999999999876433322 12222222222
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
..... ..+.++||||+.+......+. ....+..++..+|++++|+|++.. .+.+...++..+. ..+.|+++|
T Consensus 47 ~~~~~--~~~~l~Dt~G~~~~~~~~~~~--~~~~~~~~~~~ad~~i~v~D~~~~-~s~~~~~~~~~~~~~~~~~~p~ilv 121 (172)
T 2gj8_A 47 IHIDG--MPLHIIDTAGLREASDEVERI--GIERAWQEIEQADRVLFMVDGTTT-DAVDPAEIWPEFIARLPAKLPITVV 121 (172)
T ss_dssp EEETT--EEEEEEECCCCSCCSSHHHHH--HHHHHHHHHHTCSEEEEEEETTTC-CCCSHHHHCHHHHHHSCTTCCEEEE
T ss_pred EEECC--eEEEEEECCCcccchhHHHHH--HHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHHhcccCCCEEEE
Confidence 21122 458999999986532221111 112233457899999999999763 3333344444333 235799999
Q ss_pred EeCCCCC
Q psy13475 254 LNKADQV 260 (468)
Q Consensus 254 lNK~D~v 260 (468)
+||+|+.
T Consensus 122 ~NK~Dl~ 128 (172)
T 2gj8_A 122 RNKADIT 128 (172)
T ss_dssp EECHHHH
T ss_pred EECccCC
Confidence 9999974
No 23
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.57 E-value=3.5e-15 Score=146.74 Aligned_cols=122 Identities=17% Similarity=0.200 Sum_probs=80.6
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+++|.+|+|||||+|+|+|... .++.. +++|.+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~---------------------------------------~g~t~~~~~ 42 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNW---------------------------------------AGVTVERKE 42 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEEC---------------------------------------TTSSSEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCC---------------------------------------CCeeEEEEE
Confidence 34699999999999999999999874 33332 233434333
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchh-HHHHHh--hcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFN-DACQWF--IDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTR 251 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~-~~~~~~--~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ii 251 (468)
+..... ...+.||||||+.+....... +... .+++.+ ...+|++++|+|++. .+....+...+...+.|++
T Consensus 43 ~~~~~~--~~~~~liDtpG~~~~~~~~~~-~~~~e~i~~~~~~~~~~d~ii~VvD~~~---~~~~~~~~~~l~~~~~p~i 116 (274)
T 3i8s_A 43 GQFSTT--DHQVTLVDLPGTYSLTTISSQ-TSLDEQIACHYILSGDADLLINVVDASN---LERNLYLTLQLLELGIPCI 116 (274)
T ss_dssp EEEECS--SCEEEEEECCCCSCSCC-----CCHHHHHHHHHHHHTCCSEEEEEEEGGG---HHHHHHHHHHHHHHTCCEE
T ss_pred EEEEeC--CCceEEEECcCCCcccccccc-CCHHHHHHHHHHhhcCCCEEEEEecCCC---hHHHHHHHHHHHhcCCCEE
Confidence 333212 257999999998764311000 0011 223333 379999999999986 2445566667777789999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|+||+|+...
T Consensus 117 vv~NK~Dl~~~ 127 (274)
T 3i8s_A 117 VALNMLDIAEK 127 (274)
T ss_dssp EEEECHHHHHH
T ss_pred EEEECccchhh
Confidence 99999998643
No 24
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.56 E-value=7.3e-15 Score=153.67 Aligned_cols=125 Identities=21% Similarity=0.180 Sum_probs=84.4
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+++|.+|||||||+|+|+|.+...++.. +++|++.+.
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~---------------------------------------~gtT~d~~~ 215 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNV---------------------------------------AGTTRDAVD 215 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC------------------------------------------------CC
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCC---------------------------------------CCceeeeeE
Confidence 34699999999999999999999887654433 234444332
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhh--hccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVE--RQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRI 252 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~--r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iii 252 (468)
....... ..+.||||||+.......+ +.| ..-.+..++..+|++++|+|++. +.+.+...++..+...+.|+++
T Consensus 216 ~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~-~~~~~~~~~~~ad~~llv~D~~~-~~s~~~~~~~~~~~~~~~~iii 291 (436)
T 2hjg_A 216 TSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKY-SVLRALKAIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEAGKAVVI 291 (436)
T ss_dssp EEEEETT--EEEEETTHHHHTCBTTBCCCCSHH-HHHHHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECC--eEEEEEECCCcCcCccccchHHHH-HHHHHHHHHHhCCEEEEEEcCCc-CCcHHHHHHHHHHHHcCCcEEE
Confidence 2221122 4699999999865332100 111 11123356889999999999988 6777777888877777899999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+.+.
T Consensus 292 v~NK~Dl~~~ 301 (436)
T 2hjg_A 292 VVNKWDAVDK 301 (436)
T ss_dssp EEECGGGSCC
T ss_pred EEECccCCCc
Confidence 9999999864
No 25
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.55 E-value=9.2e-14 Score=131.74 Aligned_cols=128 Identities=18% Similarity=0.200 Sum_probs=77.9
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+.+.|+|+|.+|||||||+|+|++..+.. +.. +.++.+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~-~~~---------------------------------------~~~t~~~~ 67 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDV-QSY---------------------------------------SFTTKNLY 67 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEE-ECC--------------------------------------------CEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc-CCC---------------------------------------CCcceeee
Confidence 34569999999999999999999987641 111 11222221
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC-CC-HhHHHHHHHHhcC--CCc
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD-VG-PETEAILDQLKGR--EYQ 249 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~-i~-~e~~~ll~~l~~~--~~~ 249 (468)
....... ...+.||||||..+..........+ .....+...+|++++|+|++... .. .....++..+... ..|
T Consensus 68 ~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p 144 (228)
T 2qu8_A 68 VGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEM-TTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS 144 (228)
T ss_dssp EEEEEET--TEEEEEEECTTTTTSCGGGCCHHHH-HHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC
T ss_pred eeeeecC--CCeEEEEECCCCcCcccchhhhHHH-HHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc
Confidence 1111111 2569999999996532111000001 12234467889999999998632 12 2344667777665 689
Q ss_pred EEEEEeCCCCCChHH
Q psy13475 250 TRIILNKADQVKPEE 264 (468)
Q Consensus 250 iiiVlNK~D~v~~~e 264 (468)
+++|+||+|+.+..+
T Consensus 145 iilv~nK~Dl~~~~~ 159 (228)
T 2qu8_A 145 IVIGFNKIDKCNMDS 159 (228)
T ss_dssp EEEEEECGGGCC--C
T ss_pred EEEEEeCcccCCchh
Confidence 999999999986543
No 26
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.55 E-value=1.1e-14 Score=141.12 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=80.9
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+|+|.+|||||||+|+|+|....+++.. +.++| +....
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~--~~~~t------------------------------------~~~~~ 63 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLG--SQTLT------------------------------------KTCSK 63 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTT--SCCCC------------------------------------CSCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCC--CCcee------------------------------------eeeEE
Confidence 44699999999999999999999886543221 11122 22221
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhcc-chhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC-----CC
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQF-PFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR-----EY 248 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~-d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~-----~~ 248 (468)
+..... ..++.||||||+.+......+.. .+...+..++..+|++++|+|++. ++.....++..+... ..
T Consensus 64 ~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~~~ 139 (260)
T 2xtp_A 64 SQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGEDAMG 139 (260)
T ss_dssp EEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC--CCHHHHHHHHHHHHHHCGGGGG
T ss_pred EEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCchhhc
Confidence 111112 25799999999987543322210 023445556789999999999985 466666565555442 45
Q ss_pred cEEEEEe-CCCCCC
Q psy13475 249 QTRIILN-KADQVK 261 (468)
Q Consensus 249 ~iiiVlN-K~D~v~ 261 (468)
|.++|+| |+|+.+
T Consensus 140 ~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 140 HTIVLFTHKEDLNG 153 (260)
T ss_dssp GEEEEEECGGGGTT
T ss_pred cEEEEEEcccccCC
Confidence 7788887 999874
No 27
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.54 E-value=2.2e-14 Score=131.69 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=74.5
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
..+.|+|+|.+|||||||+|+|++..+..+ ...||+. +. .
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~----~~~~t~~-~~-----------------------------------~ 55 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSK----HITATVG-YN-----------------------------------V 55 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC--------CCCCCSS-EE-----------------------------------E
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccc----ccccccc-ee-----------------------------------E
Confidence 455699999999999999999999887532 1223321 10 1
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC-------
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR------- 246 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~------- 246 (468)
..+. .....+.|+||||..... .....++..+|++++|+|++....-......+..+...
T Consensus 56 ~~~~---~~~~~~~i~Dt~G~~~~~----------~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~ 122 (199)
T 4bas_A 56 ETFE---KGRVAFTVFDMGGAKKFR----------GLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRREL 122 (199)
T ss_dssp EEEE---ETTEEEEEEEECCSGGGG----------GGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBC
T ss_pred EEEE---eCCEEEEEEECCCCHhHH----------HHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcc
Confidence 1111 122569999999986432 23344578999999999998632112233344444332
Q ss_pred ----CCcEEEEEeCCCCCCh
Q psy13475 247 ----EYQTRIILNKADQVKP 262 (468)
Q Consensus 247 ----~~~iiiVlNK~D~v~~ 262 (468)
..|+++|+||+|+...
T Consensus 123 ~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 123 PGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp TTSCBCCEEEEEECTTSTTC
T ss_pred cccCCCCEEEEEECcCCCCC
Confidence 6799999999999865
No 28
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.54 E-value=3.9e-14 Score=138.85 Aligned_cols=139 Identities=18% Similarity=0.247 Sum_probs=80.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++.+....... .|++... +....+.....
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~~~~~~~~---~~~~~~~-----------------------------~t~~~~~~~~~ 57 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTDLYSPEYP---GPSHRIK-----------------------------KTVQVEQSKVL 57 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSCC-----------------------------------------------CCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccCCC---CcccccC-----------------------------CceEEEEEEEE
Confidence 499999999999999999999887543210 0100000 00111111111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhh---hccc-hhHHHHHhhc-------------ccCEEEEEEcCCCCCCCHhHHHH
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVE---RQFP-FNDACQWFID-------------RADIIFLVYDPSKLDVGPETEAI 239 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~---r~~d-~~~~~~~~~~-------------~aDlIllV~Da~~~~i~~e~~~l 239 (468)
.........++||||||+.+...... ...+ +.+....++. ++|++++++++...++.+.+..+
T Consensus 58 ~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~ 137 (274)
T 3t5d_A 58 IKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEF 137 (274)
T ss_dssp ECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHH
T ss_pred EecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHH
Confidence 11122223799999999964321100 0000 0011122222 47899999987665678888888
Q ss_pred HHHHhcCCCcEEEEEeCCCCCChHHHHHH
Q psy13475 240 LDQLKGREYQTRIILNKADQVKPEELMRV 268 (468)
Q Consensus 240 l~~l~~~~~~iiiVlNK~D~v~~~el~~v 268 (468)
++.+.. ..|+++|+||+|+...+++...
T Consensus 138 l~~l~~-~~pvi~V~nK~D~~~~~e~~~~ 165 (274)
T 3t5d_A 138 MKRLHE-KVNIIPLIAKADTLTPEECQQF 165 (274)
T ss_dssp HHHHTT-TSCEEEEESSGGGSCHHHHHHH
T ss_pred HHHHhc-cCCEEEEEeccCCCCHHHHHHH
Confidence 988887 7899999999999877665443
No 29
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.53 E-value=6.6e-14 Score=124.93 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=73.6
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+++|.+|+|||||+|+|++..+.. ..||+.. ...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~------~~~t~~~------------------------------------~~~ 44 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVT------TIPTIGF------------------------------------NVE 44 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCC------CCCCSSE------------------------------------EEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCC------cCCcCcc------------------------------------ceE
Confidence 3459999999999999999999876531 1222210 011
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH-hc---CCCcE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL-KG---REYQT 250 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l-~~---~~~~i 250 (468)
.+... ...+.++||||..... .....++..+|++++|+|++....-......+..+ .. .+.|+
T Consensus 45 ~~~~~---~~~~~~~Dt~G~~~~~----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 111 (171)
T 1upt_A 45 TVTYK---NLKFQVWDLGGLTSIR----------PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAIL 111 (171)
T ss_dssp EEEET---TEEEEEEEECCCGGGG----------GGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEE
T ss_pred EEEEC---CEEEEEEECCCChhhh----------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEE
Confidence 11211 2579999999986432 22344578999999999998632112233333333 22 46799
Q ss_pred EEEEeCCCCCCh
Q psy13475 251 RIILNKADQVKP 262 (468)
Q Consensus 251 iiVlNK~D~v~~ 262 (468)
++|+||+|+.+.
T Consensus 112 ilv~nK~Dl~~~ 123 (171)
T 1upt_A 112 VVFANKQDMEQA 123 (171)
T ss_dssp EEEEECTTSTTC
T ss_pred EEEEECCCCcCC
Confidence 999999999764
No 30
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.53 E-value=2e-14 Score=140.18 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=78.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+|+|+|.... ++.. ++++.+...+
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~---------------------------------------pg~tv~~~~~ 45 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANW---------------------------------------PGVTVEKKEG 45 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEE-EEEC---------------------------------------TTSCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCc-ccCC---------------------------------------CCceEEEEEE
Confidence 46999999999999999999997653 2222 2233333332
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhh--cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFI--DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~--~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
..... ...+.||||||+.+....... ..+++.++ ..+|++++|+|++.+ .....+...+...+.|+++|
T Consensus 46 ~~~~~--~~~~~l~DtpG~~~~~~~~~~----e~v~~~~~~~~~~d~ii~V~D~t~~---~~~~~~~~~l~~~~~pvilv 116 (258)
T 3a1s_A 46 VFTYK--GYTINLIDLPGTYSLGYSSID----EKIARDYLLKGDADLVILVADSVNP---EQSLYLLLEILEMEKKVILA 116 (258)
T ss_dssp EEEET--TEEEEEEECCCCSSCCSSSHH----HHHHHHHHHHSCCSEEEEEEETTSC---HHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEC--CeEEEEEECCCcCccCCCCHH----HHHHHHHHhhcCCCEEEEEeCCCch---hhHHHHHHHHHhcCCCEEEE
Confidence 22111 257999999998754221000 12234444 689999999999873 34455667777778999999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+..
T Consensus 117 ~NK~Dl~~ 124 (258)
T 3a1s_A 117 MTAIDEAK 124 (258)
T ss_dssp EECHHHHH
T ss_pred EECcCCCC
Confidence 99999753
No 31
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.53 E-value=3.4e-14 Score=129.79 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=75.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCc-eeEE--EecCCCCccccCcccccCccccccccccccceeee
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPA-YFNI--LSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~-~~~~--i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
.|+|+|.+|+|||||+|+|++..+. ....||+. .+.. +..+......... ......+.++...+.......
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDTFH-----ENTNTTIGASFCTYVVNLNDINIKNNSN-NEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCC-----SSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-----CCcCccccceeEEEEEEecCcccccccc-ccccccccccccccccccccc
Confidence 5999999999999999999998764 22234442 2221 2222111000000 000000111111111111111
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc-CCCcEEE
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG-REYQTRI 252 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~-~~~~iii 252 (468)
.+..........+.|+||||... +......++..+|++++|+|++....-.....++..+.. ...|+++
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piil 152 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQER----------YASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIIL 152 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGG----------CTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred cccccCccceeEEEEEECCCcHH----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 11111112225699999999543 334566778999999999999762111222334444433 3489999
Q ss_pred EEeCCC
Q psy13475 253 ILNKAD 258 (468)
Q Consensus 253 VlNK~D 258 (468)
|+||+|
T Consensus 153 v~NK~D 158 (208)
T 3clv_A 153 VANKID 158 (208)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 999999
No 32
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.52 E-value=3.3e-14 Score=144.64 Aligned_cols=159 Identities=17% Similarity=0.326 Sum_probs=88.2
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEe--cCCCC-ccc---cCcccccCccccccc----
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILS--WGESP-TIL---DGTQLAADWTFSGLQ---- 163 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~--~g~~~-~~i---~G~~l~~D~~f~~L~---- 163 (468)
..|.|+|+|.+|||||||+|+|+|.++.+ .+...+|...+.+. +...+ ... +|... . .|..+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p----~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~-t--t~~~v~~~i~ 102 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLP----RGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKF-T--DFEEVRLEIE 102 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSC----CCSSSCCCSCEEEEEEECSSCEEEETTSTTCCB-C--CHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCC----CCCCcccccceEEEEEcCCccceeeeecCCccc-C--CHHHHHHHHH
Confidence 56899999999999999999999998853 23334444443221 11110 000 00000 0 011000
Q ss_pred ----cc---cccceeeeEEeecCCCCCcceEEEeCCCCchhhh-----hhhhccchhHHHHHhhcc-cCEEEEEEcCCCC
Q psy13475 164 ----KF---GQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRK-----QVERQFPFNDACQWFIDR-ADIIFLVYDPSKL 230 (468)
Q Consensus 164 ----~f---g~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~-----~~~r~~d~~~~~~~~~~~-aDlIllV~Da~~~ 230 (468)
.. +..+......+.+..+...+++||||||+..... ...+. +...+..++.. +++|++|+|+..
T Consensus 103 ~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~iiL~v~~a~~- 179 (353)
T 2x2e_A 103 AETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQ--IRDMLMQFVTKENCLILAVSPANS- 179 (353)
T ss_dssp HHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHH--HHHHHHHHHTSTTEEEEEEEETTS-
T ss_pred HHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHH--HHHHHHHHHcCCCeEEEEEecCCC-
Confidence 00 0111111111111123336899999999975311 11112 33455566644 456677778765
Q ss_pred CCCHhHH-HHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 231 DVGPETE-AILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 231 ~i~~e~~-~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
++..... .+++.+...+.|+++|+||+|+.+.
T Consensus 180 ~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 180 DLANSDALKVAKEVDPQGQRTIGVITKLDLMDE 212 (353)
T ss_dssp CGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCT
T ss_pred ccchhHHHHHHHHhCcCCCceEEEeccccccCc
Confidence 5554444 4778887778899999999999854
No 33
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=2.5e-14 Score=128.95 Aligned_cols=117 Identities=15% Similarity=0.260 Sum_probs=70.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+... ...||+. ..+.... .
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~~~~----~~~~t~~--------------------------------~~~~~~~--~ 53 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAFLAG----TFISTVG--------------------------------IDFRNKV--L 53 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCC----CCCCCCS--------------------------------CEEEEEE--E
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCC----CcCCcee--------------------------------eEEEEEE--E
Confidence 599999999999999999999876421 1122221 1111000 1
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.. ......+.++||||... +......++..+|++++|+|++....-.....++..+. ..+.|+++|
T Consensus 54 ~~-~~~~~~~~~~Dt~G~~~----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 122 (180)
T 2g6b_A 54 DV-DGVKVKLQMWDTAGQER----------FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLL 122 (180)
T ss_dssp EE-TTEEEEEEEEECCCC------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred EE-CCEEEEEEEEeCCCcHH----------HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 11 12124689999999654 22334555789999999999976211112223333332 356799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 123 ~nK~Dl~~~ 131 (180)
T 2g6b_A 123 GNKVDSAHE 131 (180)
T ss_dssp EECCSTTSC
T ss_pred EECcccCcc
Confidence 999999753
No 34
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.52 E-value=2e-14 Score=137.64 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=73.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|+|..+...+.. + ..++......
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~~~~----~----------------------------------~~~t~~~~~~ 71 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHSGTA----A----------------------------------KSITKKCEKR 71 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC---------------------------------------------CCSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCccCCC----C----------------------------------CceeeeEEEE
Confidence 4599999999999999999999877421111 0 0111111111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhh---hhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh-----cCC
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQ---VERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK-----GRE 247 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~---~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~-----~~~ 247 (468)
..... ...+.||||||+.+.... ..+. +..........+|++|+|+|++.+ +......+..+. ...
T Consensus 72 ~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~d~~~~--~~~~~~~l~~~~~~~~~~~~ 145 (239)
T 3lxx_A 72 SSSWK--ETELVVVDTPGIFDTEVPNAETSKE--IIRCILLTSPGPHALLLVVPLGRY--TEEEHKATEKILKMFGERAR 145 (239)
T ss_dssp EEEET--TEEEEEEECCSCC-----CHHHHHH--HHHHHHHTTTCCSEEEEEEETTCC--SSHHHHHHHHHHHHHHHHHG
T ss_pred EEEeC--CceEEEEECCCccCCCCCHHHHHHH--HHHHHHhcCCCCcEEEEEeeCCCC--CHHHHHHHHHHHHHhhhhcc
Confidence 11111 257999999999865322 1222 444455556788999999999753 444444444442 123
Q ss_pred CcEEEEEeCCCCCChHHHH
Q psy13475 248 YQTRIILNKADQVKPEELM 266 (468)
Q Consensus 248 ~~iiiVlNK~D~v~~~el~ 266 (468)
.|+++|+||+|+....++.
T Consensus 146 ~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 146 SFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp GGEEEEEECGGGC------
T ss_pred ceEEEEEeCCccCCcccHH
Confidence 5899999999998655443
No 35
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.52 E-value=4.1e-14 Score=127.36 Aligned_cols=116 Identities=19% Similarity=0.287 Sum_probs=78.6
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+.+.|+++|.+|+|||||+|+|++..+... ..|++. ..+. .
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~~~~~--------------------------------~~~~--~ 47 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ-----EAGGIT--------------------------------QHIG--A 47 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCS-----SCCSSS--------------------------------TTCC--C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccC-----CCCcee--------------------------------Eeee--E
Confidence 456799999999999999999999876421 111100 0000 0
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
..+.. . ...+.++||||....... ...++..+|++++|+|++. ....+..+.+..+...+.|+++|
T Consensus 48 ~~~~~-~--~~~~~l~Dt~G~~~~~~~----------~~~~~~~~d~~i~v~d~~~-~~~~~~~~~l~~~~~~~~p~ilv 113 (178)
T 2lkc_A 48 YQVTV-N--DKKITFLDTPGHEAFTTM----------RARGAQVTDIVILVVAADD-GVMPQTVEAINHAKAANVPIIVA 113 (178)
T ss_dssp CEEEE-T--TEEEEESCCCSSSSSSCS----------CCSSCCCCCEEEEEEETTC-CCCHHHHHHHHHHGGGSCCEEEE
T ss_pred EEEEe-C--CceEEEEECCCCHHHHHH----------HHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHhCCCCEEEE
Confidence 01111 1 146889999997543221 2233688999999999877 45666667777777667899999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 114 ~nK~Dl~~~ 122 (178)
T 2lkc_A 114 INKMDKPEA 122 (178)
T ss_dssp EETTTSSCS
T ss_pred EECccCCcC
Confidence 999999853
No 36
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.51 E-value=4.8e-14 Score=137.31 Aligned_cols=121 Identities=20% Similarity=0.204 Sum_probs=76.2
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE-
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR- 174 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~- 174 (468)
..|+++|.+|+|||||+|+|+|.+.+.++.. + .++.....
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~----~-----------------------------------~~t~~~~~~ 77 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPF----Q-----------------------------------AEGLRPVMV 77 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCSCCCSS----C-----------------------------------C-CCCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCC----C-----------------------------------CcceeeEEE
Confidence 3599999999999999999999887543322 1 11111111
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhh--cccCEEEEEEcCCCCCCCHhHHHHHHHHhcC-----C
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFI--DRADIIFLVYDPSKLDVGPETEAILDQLKGR-----E 247 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~--~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~-----~ 247 (468)
.... . ...++||||||+.+......+. .+.++.++ ..+|++++|++.+....+.....+++.+... .
T Consensus 78 ~~~~-~--~~~l~liDTpG~~~~~~~~~~~---~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~ 151 (262)
T 3def_A 78 SRTM-G--GFTINIIDTPGLVEAGYVNHQA---LELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151 (262)
T ss_dssp EEEE-T--TEEEEEEECCCSEETTEECHHH---HHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGG
T ss_pred EEEE-C--CeeEEEEECCCCCCcccchHHH---HHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhh
Confidence 1111 1 2479999999998653222121 12222222 3789999998776544565555666655432 1
Q ss_pred CcEEEEEeCCCCCC
Q psy13475 248 YQTRIILNKADQVK 261 (468)
Q Consensus 248 ~~iiiVlNK~D~v~ 261 (468)
.|+++|+||+|+..
T Consensus 152 ~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 152 CKTLLVLTHAQFSP 165 (262)
T ss_dssp GGEEEEEECTTCCC
T ss_pred cCEEEEEeCcccCC
Confidence 48999999999863
No 37
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.51 E-value=5.8e-14 Score=147.64 Aligned_cols=125 Identities=20% Similarity=0.173 Sum_probs=86.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+++|.+|+|||||+|+|+|.+...++.. ++++++...
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~---------------------------------------~gtt~~~~~ 235 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNV---------------------------------------AGTTRDAVD 235 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC---------------------------------------------CTTS
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCC---------------------------------------CCeEEEEEE
Confidence 34599999999999999999999876544433 223333222
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhh--hhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQ--VERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRI 252 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~--~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iii 252 (468)
....... ..+.||||||+.+.... ..+.| ....+..++..+|++++|+|++. +++..+..++..+...+.|+++
T Consensus 236 ~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~-~~~~~~~~~~~ad~~llviD~~~-~~~~~~~~~~~~~~~~~~~~il 311 (456)
T 4dcu_A 236 TSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKY-SVLRALKAIDRSEVVAVVLDGEE-GIIEQDKRIAGYAHEAGKAVVI 311 (456)
T ss_dssp EEEEETT--EEEEETTGGGTTTBTTBCCCCSHH-HHHHHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECC--ceEEEEECCCCCcCcccchHHHHH-HHHHHHHHHhhCCEEEEEEeCCC-CcCHHHHHHHHHHHHcCCCEEE
Confidence 1111122 47999999998754322 11121 12234456889999999999988 6788888888888888899999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+.+.
T Consensus 312 v~NK~Dl~~~ 321 (456)
T 4dcu_A 312 VVNKWDAVDK 321 (456)
T ss_dssp EEECGGGSCC
T ss_pred EEEChhcCCC
Confidence 9999999853
No 38
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.51 E-value=6.3e-14 Score=127.38 Aligned_cols=123 Identities=16% Similarity=0.186 Sum_probs=74.7
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCce-eE---EEecCCCCccccCcccccCccccccccccccce
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAY-FN---ILSWGESPTILDGTQLAADWTFSGLQKFGQGLL 170 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~-~~---~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~ 170 (468)
...|+|+|.+|+|||||+|+|++..+.. ...||... +. .+..+.... +..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~-------------------~~~-- 64 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNS-----KFITTVGIDFREKRVVYRANGPD-------------------GAV-- 64 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCC-----SCCCCCSEEEEEEEEEECTTSCC-------------------CSS--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc-----CcccccceeeeeEEEEEecCCcc-------------------ccc--
Confidence 3459999999999999999999876642 11222211 11 111110000 000
Q ss_pred eeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----C
Q psy13475 171 DRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----R 246 (468)
Q Consensus 171 ~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~ 246 (468)
.......+.|+||||... +......++..+|++++|+|++....-.....++..+.. .
T Consensus 65 --------~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 126 (195)
T 3bc1_A 65 --------GRGQRIHLQLWDTAGLER----------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126 (195)
T ss_dssp --------CCCEEEEEEEEEECCSGG----------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSS
T ss_pred --------ccCcEEEEEEEeCCCcHH----------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence 000124689999999743 334566678999999999999762111222344444432 4
Q ss_pred CCcEEEEEeCCCCCC
Q psy13475 247 EYQTRIILNKADQVK 261 (468)
Q Consensus 247 ~~~iiiVlNK~D~v~ 261 (468)
..|+++|+||+|+.+
T Consensus 127 ~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 127 NPDIVLCGNKSDLED 141 (195)
T ss_dssp SCCEEEEEECTTCGG
T ss_pred CCCEEEEEECccccc
Confidence 679999999999864
No 39
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=2.6e-14 Score=131.48 Aligned_cols=116 Identities=22% Similarity=0.280 Sum_probs=73.2
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|++..+.. . ..|+. |.++. ...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~---~--~~~~~--------------------------------~~~~~--~~~ 64 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDH---N--ISPTI--------------------------------GASFM--TKT 64 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCT---T--CCCCS--------------------------------SEEEE--EEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCC---C--cCCCc--------------------------------ceeEE--EEE
Confidence 359999999999999999999987531 1 11111 11110 011
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~iii 252 (468)
... ......+.|+||||... +......++..+|++++|+|++....-.....++..+.. ...|+++
T Consensus 65 ~~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piii 133 (192)
T 2fg5_A 65 VPC-GNELHKFLIWDTAGQER----------FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAI 133 (192)
T ss_dssp EEC-SSSEEEEEEEEECCSGG----------GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEe-CCEEEEEEEEcCCCchh----------hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 111 12235699999999643 223345568899999999999763211222334444432 3679999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+.+
T Consensus 134 v~NK~Dl~~ 142 (192)
T 2fg5_A 134 AGNKCDLSD 142 (192)
T ss_dssp EEECGGGGG
T ss_pred EEECccccc
Confidence 999999864
No 40
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.51 E-value=1e-13 Score=145.13 Aligned_cols=126 Identities=19% Similarity=0.224 Sum_probs=82.9
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+++|++|||||||+|+|+|.....++.. +++|++...
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~---------------------------------------~gtT~d~~~ 220 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPI---------------------------------------PGTTRDPVD 220 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCC---------------------------------------C------CC
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCC---------------------------------------CCCcCCceE
Confidence 34699999999999999999999887655444 234444433
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhh-h--hccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQV-E--RQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTR 251 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~-~--r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ii 251 (468)
+...... ..+.++||||+....... + ..| ....+..++..+|++++|+|++. +.+.....+...+...+.|++
T Consensus 221 ~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~-~~~~~~~~i~~ad~vllv~d~~~-~~~~~~~~i~~~l~~~~~~~i 296 (439)
T 1mky_A 221 DEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKY-SNYRVVDSIEKADVVVIVLDATQ-GITRQDQRMAGLMERRGRASV 296 (439)
T ss_dssp EEEEETT--EEEEESSCSCC-----------CCS-CCHHHHHHHHHCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCEEE
T ss_pred EEEEECC--EEEEEEECCCCccccccchhhHHHH-HHHHHHHHHhhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEE
Confidence 3222122 468999999986432211 1 111 11224456789999999999987 567666677777777788999
Q ss_pred EEEeCCCCCChH
Q psy13475 252 IILNKADQVKPE 263 (468)
Q Consensus 252 iVlNK~D~v~~~ 263 (468)
+|+||+|+.+..
T Consensus 297 lv~NK~Dl~~~~ 308 (439)
T 1mky_A 297 VVFNKWDLVVHR 308 (439)
T ss_dssp EEEECGGGSTTG
T ss_pred EEEECccCCCch
Confidence 999999998643
No 41
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.51 E-value=3.3e-14 Score=126.41 Aligned_cols=116 Identities=21% Similarity=0.356 Sum_probs=73.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.. ...|++ +.++. ....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~-----~~~~~~--------------------------------~~~~~--~~~~ 45 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDFAE-----NKEPTI--------------------------------GAAFL--TQRV 45 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCT-----TCCCCS--------------------------------SEEEE--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-----CCCCcc--------------------------------ceeEE--EEEE
Confidence 49999999999999999999887642 111221 11110 0111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.. ......+.++||||... +......++..+|++++|+|++....-.....++..+. ..+.|+++|
T Consensus 46 ~~-~~~~~~~~~~D~~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 114 (170)
T 1ek0_A 46 TI-NEHTVKFEIWDTAGQER----------FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALV 114 (170)
T ss_dssp EE-TTEEEEEEEEEECCSGG----------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EE-CCEEEEEEEEECCCChh----------hhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 11 11124689999999643 23345667899999999999976211122223333333 246799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+...
T Consensus 115 ~nK~Dl~~~ 123 (170)
T 1ek0_A 115 GNKIDXLQE 123 (170)
T ss_dssp EECGGGGGS
T ss_pred EECCCcccc
Confidence 999998643
No 42
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.50 E-value=2.7e-14 Score=130.68 Aligned_cols=118 Identities=19% Similarity=0.184 Sum_probs=73.5
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+|+|.+|+|||||+|+|++..+.... .||. +.++. ..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-----~~t~--------------------------------~~~~~--~~ 62 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAF-----VSTV--------------------------------GIDFK--VK 62 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSC-----CCCC--------------------------------CCEEE--EE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCc-----CCce--------------------------------eEEEE--EE
Confidence 345999999999999999999998764211 1111 11110 11
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTR 251 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~ii 251 (468)
.+.. ......+.|+||||.... ......++..+|++++|+|++....-.....++..+.. .+.|++
T Consensus 63 ~~~~-~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 131 (189)
T 2gf9_A 63 TVYR-HDKRIKLQIWDTAGQERY----------RTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVI 131 (189)
T ss_dssp EEEE-TTEEEEEEEEECCSCCSS----------CCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred EEEE-CCeEEEEEEEeCCCcHHH----------hhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 1111 112246899999996542 22234557899999999999762111222334444443 367999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|+||+|+.+.
T Consensus 132 lv~nK~Dl~~~ 142 (189)
T 2gf9_A 132 LVGNKCDLEDE 142 (189)
T ss_dssp EEEECTTCGGG
T ss_pred EEEECcccccc
Confidence 99999998643
No 43
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.50 E-value=7.3e-14 Score=123.98 Aligned_cols=114 Identities=15% Similarity=0.251 Sum_probs=72.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE-
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG- 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~- 175 (468)
.|+++|.+|+|||||+|+|++..+.. ...||+. ..+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~~~~-----~~~~t~~------------------------------------~~~~~~ 43 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGIFVE-----KYDPTIE------------------------------------DSYRKQ 43 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCCC-----SCCCCSE------------------------------------EEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-----CCCCCcc------------------------------------ceEEEE
Confidence 59999999999999999999876532 1112221 11111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH----hcCCCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL----KGREYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l----~~~~~~ii 251 (468)
... ......+.|+||||... +......++..+|++++|+|++....-+....++..+ ...+.|++
T Consensus 44 ~~~-~~~~~~~~l~D~~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 112 (167)
T 1c1y_A 44 VEV-DCQQCMLEILDTAGTEQ----------FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI 112 (167)
T ss_dssp EES-SSCEEEEEEEEECSSCS----------STTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEE
T ss_pred EEE-CCEEEEEEEEECCChHH----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEE
Confidence 111 22224689999999654 2234556678899999999987521001222233222 23468999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|+||+|+.+.
T Consensus 113 lv~nK~Dl~~~ 123 (167)
T 1c1y_A 113 LVGNKCDLEDE 123 (167)
T ss_dssp EEEECTTCGGG
T ss_pred EEEECcccccc
Confidence 99999998643
No 44
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.50 E-value=6.8e-14 Score=125.61 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=73.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|++..+.... .||+ +.++.. ..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----~~t~--------------------------------~~~~~~--~~ 56 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADC-----PHTI--------------------------------GVEFGT--RI 56 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSC-----TTSC--------------------------------CCCEEE--EE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-----CCcc--------------------------------ceEEEE--EE
Confidence 45999999999999999999998764211 1111 011100 11
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH---hcCCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL---KGREYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l---~~~~~~iii 252 (468)
... ......+.|+||||... +......++..+|++++|+|++..........++..+ ...+.|+++
T Consensus 57 ~~~-~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 125 (179)
T 1z0f_A 57 IEV-SGQKIKLQIWDTAGQER----------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 125 (179)
T ss_dssp EEE-TTEEEEEEEEECTTGGG----------TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEE-CCeEEEEEEEECCCChH----------hhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 111 11124689999999543 3345667789999999999997621112222333333 335679999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+.+
T Consensus 126 v~nK~Dl~~ 134 (179)
T 1z0f_A 126 IGNKADLEA 134 (179)
T ss_dssp EEECTTCGG
T ss_pred EEECccccc
Confidence 999999864
No 45
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.50 E-value=3.6e-14 Score=127.56 Aligned_cols=115 Identities=22% Similarity=0.302 Sum_probs=71.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|++|+|||||+|+|+|.... .+..|+ ++++...+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~-----~~~~~~-----------------------------------~t~~~~~~ 43 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY-----IGNWPG-----------------------------------VTVEKKEG 43 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS-----CC----------------------------------------CCCCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee-----ccCCCC-----------------------------------cceeeeEE
Confidence 46999999999999999999997542 111121 11111111
Q ss_pred -eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhh--cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEE
Q psy13475 176 -LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFI--DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRI 252 (468)
Q Consensus 176 -~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~--~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iii 252 (468)
+.. . ...+.++||||......... .......++ ..+|++++|+|++.. +....++..+...+.|+++
T Consensus 44 ~~~~-~--~~~l~i~Dt~G~~~~~~~~~----~~~~~~~~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~~~~p~il 113 (165)
T 2wji_A 44 EFEY-N--GEKFKVVDLPGVYSLTANSI----DEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLMEMGANLLL 113 (165)
T ss_dssp EEEE-T--TEEEEEEECCCCSCSSSSSH----HHHHHHHHHHHHCCSEEEEEEETTCH---HHHHHHHHHHHHTTCCEEE
T ss_pred EEEE-C--CcEEEEEECCCcccCCCcch----hHHHHHHHHhcCCCCEEEEEecCCch---hHhHHHHHHHHhcCCCEEE
Confidence 111 1 14689999999865321100 012233333 489999999999752 3344455566666789999
Q ss_pred EEeCCCCC
Q psy13475 253 ILNKADQV 260 (468)
Q Consensus 253 VlNK~D~v 260 (468)
|.||+|+.
T Consensus 114 v~nK~Dl~ 121 (165)
T 2wji_A 114 ALNKMDLA 121 (165)
T ss_dssp EEECHHHH
T ss_pred EEEchHhc
Confidence 99999975
No 46
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.49 E-value=6.9e-14 Score=123.36 Aligned_cols=114 Identities=16% Similarity=0.248 Sum_probs=71.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+... ..||+. ..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~~~~~------------------------------------~~~~~~ 43 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHFVDE-----CDPTIE------------------------------------DSYRKQ 43 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSC-----CCTTCC------------------------------------EEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCccc-----cCCccc------------------------------------eEEEEE
Confidence 499999999999999999998765421 112111 111111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~iii 252 (468)
.........+.++||||... +......++..+|++++|+|++..........++..+. ..+.|+++
T Consensus 44 ~~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~ii 113 (166)
T 2ce2_X 44 VVIDGETCLLDILDTAGQEE----------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL 113 (166)
T ss_dssp EEETTEEEEEEEEECCCCSS----------CCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEE
T ss_pred EEECCEEEEEEEEECCCchh----------hhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 11112224588999999654 22345556789999999999875211112233333332 23689999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+.+
T Consensus 114 v~nK~Dl~~ 122 (166)
T 2ce2_X 114 VGNKSDLAA 122 (166)
T ss_dssp EEECTTCSC
T ss_pred EEEchhhhh
Confidence 999999875
No 47
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.49 E-value=4.7e-14 Score=124.93 Aligned_cols=114 Identities=17% Similarity=0.265 Sum_probs=70.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+... ..||+.. .+ ....
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~~t~~~--------------------------------~~---~~~~ 45 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDEFVED-----YEPTKAD--------------------------------SY---RKKV 45 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSC-----CCTTCCE--------------------------------EE---EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCccCCC-----CCCCcce--------------------------------EE---EEEE
Confidence 599999999999999999998875321 1122211 00 0011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH----hcCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL----KGREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l----~~~~~~iii 252 (468)
.. ......+.|+||||... +......++..+|++++|+|++....-.....++..+ ...+.|+++
T Consensus 46 ~~-~~~~~~~~l~D~~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 114 (168)
T 1u8z_A 46 VL-DGEEVQIDILDTAGQED----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 114 (168)
T ss_dssp EE-TTEEEEEEEEECCC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEE
T ss_pred EE-CCEEEEEEEEECCCcch----------hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 11 12124689999999653 3344556688999999999997621111122222222 234679999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+.+
T Consensus 115 v~nK~Dl~~ 123 (168)
T 1u8z_A 115 VGNKSDLED 123 (168)
T ss_dssp EEECGGGGG
T ss_pred EEECccccc
Confidence 999999864
No 48
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.49 E-value=6.9e-14 Score=126.86 Aligned_cols=114 Identities=15% Similarity=0.223 Sum_probs=70.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+... ..||+. +.....
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~~~~~-----~~~t~~------------------------------------~~~~~~ 44 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNHFVDE-----YDPTIE------------------------------------DSYRKQ 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCCC-----CCTTCC------------------------------------EEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-----CCCCch------------------------------------heEEEE
Confidence 499999999999999999998875421 112221 111111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH----hcCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL----KGREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l----~~~~~~iii 252 (468)
.........+.|+||||... +......++..+|++++|+|++....-.....++..+ ...+.|+++
T Consensus 45 ~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~ 114 (189)
T 4dsu_A 45 VVIDGETCLLDILDTAGQEE----------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVL 114 (189)
T ss_dssp EEETTEEEEEEEEECCCC-------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEE
T ss_pred EEECCcEEEEEEEECCCcHH----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 11122223578899999654 2234556678899999999997621111222233322 234679999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+.+
T Consensus 115 v~nK~Dl~~ 123 (189)
T 4dsu_A 115 VGNKCDLPS 123 (189)
T ss_dssp EEECTTSSS
T ss_pred EEECccCcc
Confidence 999999874
No 49
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.49 E-value=7e-14 Score=126.16 Aligned_cols=116 Identities=16% Similarity=0.291 Sum_probs=73.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++.++.... .|+. +.++.. ..+
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~~~~~~-----~~~~--------------------------------~~~~~~--~~~ 54 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQ-----ESTI--------------------------------GAAFFS--QTL 54 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCTTTS-----CCCS--------------------------------CCSEEE--EEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCcC-----CCCc--------------------------------eeEEEE--EEE
Confidence 5999999999999999999998764311 1111 111100 011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~iiiV 253 (468)
.. ......+.|+||||... +......++..+|++++|+|++....-.....++..+.. ...|+++|
T Consensus 55 ~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v 123 (181)
T 2efe_B 55 AV-NDATVKFEIWDTAGQER----------YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALA 123 (181)
T ss_dssp EE-TTEEEEEEEEECCCSGG----------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EE-CCEEEEEEEEeCCCChh----------hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 11 11124689999999643 223345568899999999999762111223344444433 35789999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 124 ~nK~Dl~~~ 132 (181)
T 2efe_B 124 GNKSDLLDA 132 (181)
T ss_dssp EECTTCTTT
T ss_pred EECCccccc
Confidence 999999753
No 50
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.49 E-value=6.4e-14 Score=128.24 Aligned_cols=116 Identities=20% Similarity=0.285 Sum_probs=73.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|+|++..+... ..|++ +.......+
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~~~~~-----~~~~~----------------------------------~~~~~~~~~ 58 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDTYTES-----YISTI----------------------------------GVDFKIRTI 58 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSC-----CCCCS----------------------------------SEEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCC-----CCCcc----------------------------------cceEEEEEE
Confidence 599999999999999999998776421 11211 100011111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH---hcCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL---KGREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l---~~~~~~iiiV 253 (468)
.. ......+.|+||||... +......++..+|++++|+|++....-.....++..+ ...+.|+++|
T Consensus 59 ~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv 127 (196)
T 3tkl_A 59 EL-DGKTIKLQIWDTAGQER----------FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 127 (196)
T ss_dssp EE-TTEEEEEEEEEECCSGG----------GCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred EE-CCEEEEEEEEECCCcHh----------hhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 11 11124689999999643 2234566789999999999997621111223333333 3346799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 128 ~nK~Dl~~~ 136 (196)
T 3tkl_A 128 GNKCDLTTK 136 (196)
T ss_dssp EECTTCTTT
T ss_pred EECcccccc
Confidence 999998754
No 51
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.49 E-value=4.9e-14 Score=124.65 Aligned_cols=115 Identities=15% Similarity=0.235 Sum_probs=72.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+... ..||+.... ....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~~~-----------------------------------~~~~ 44 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGTFIEK-----YDPTIEDFY-----------------------------------RKEI 44 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSC-----CCTTCCEEE-----------------------------------EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCccc-----CCCCcceeE-----------------------------------EEEE
Confidence 599999999999999999998766421 112221110 0111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHH----HHHhcCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAIL----DQLKGREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll----~~l~~~~~~iii 252 (468)
.. ......+.|+||||... +......++..+|++++|+|++....-......+ +.....+.|+++
T Consensus 45 ~~-~~~~~~~~l~D~~G~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 113 (167)
T 1kao_A 45 EV-DSSPSVLEILDTAGTEQ----------FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVIL 113 (167)
T ss_dssp EE-TTEEEEEEEEECCCTTC----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred EE-CCEEEEEEEEECCCchh----------hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 11 12124589999999643 3344556688999999999997621111122222 223334689999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+.+.
T Consensus 114 v~nK~Dl~~~ 123 (167)
T 1kao_A 114 VGNKVDLESE 123 (167)
T ss_dssp EEECGGGGGG
T ss_pred EEECCccccc
Confidence 9999998643
No 52
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.49 E-value=3.1e-14 Score=128.04 Aligned_cols=117 Identities=18% Similarity=0.225 Sum_probs=70.5
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|++..+.... .|++ +.......
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-----~~~~----------------------------------~~~~~~~~ 50 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSY-----ITTI----------------------------------GVDFKIRT 50 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---CC-----TTTB----------------------------------SEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcc-----CCCc----------------------------------eeEEEEEE
Confidence 35999999999999999999998764211 1111 11011111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc--CCCcEEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG--REYQTRII 253 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~--~~~~iiiV 253 (468)
+.. ......+.|+||||.... ......++..+|++++|+|++....-.....++..+.. ...|+++|
T Consensus 51 ~~~-~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv 119 (181)
T 3tw8_B 51 VEI-NGEKVKLQIWDTAGQERF----------RTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILV 119 (181)
T ss_dssp EEE-TTEEEEEEEEEETTGGGC----------SSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred EEE-CCEEEEEEEEcCCCchhh----------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 111 121246899999995432 12234457899999999999762111122234444432 24799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 120 ~nK~Dl~~~ 128 (181)
T 3tw8_B 120 GNKNDDPER 128 (181)
T ss_dssp EECTTCGGG
T ss_pred EECCCCchh
Confidence 999998643
No 53
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.49 E-value=1.2e-13 Score=127.57 Aligned_cols=116 Identities=18% Similarity=0.213 Sum_probs=74.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|+|++..+.... .||. +.++. ...+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~~~~~-----~~t~--------------------------------~~~~~--~~~~ 50 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDSFTPAF-----VSTV--------------------------------GIDFK--VKTI 50 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCCCSCC-----CCCC--------------------------------SEEEE--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCc-----CCcc--------------------------------ceeEE--EEEE
Confidence 5999999999999999999998764211 1111 11110 1111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~iiiV 253 (468)
.. ......+.|+||||... +......++..+|++++|+|++....-.....++..+.. ...|+++|
T Consensus 51 ~~-~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 119 (203)
T 1zbd_A 51 YR-NDKRIKLQIWDTAGLER----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 119 (203)
T ss_dssp EE-TTEEEEEEEEEECCSGG----------GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEE
T ss_pred EE-CCeEEEEEEEECCCchh----------hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 11 12224689999999754 334456668899999999999762111222334444433 46799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 120 ~nK~Dl~~~ 128 (203)
T 1zbd_A 120 GNKCDMEDE 128 (203)
T ss_dssp EECTTCTTS
T ss_pred EECcccCcc
Confidence 999998753
No 54
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.49 E-value=8.2e-14 Score=136.17 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=77.1
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+|+|+|.++..++... + ++......
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~---~------------------------------------~t~~~~~~ 80 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQ---S------------------------------------EGPRPVMV 80 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSS---C------------------------------------CCSSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCC---C------------------------------------cceeeEEE
Confidence 36999999999999999999998875433221 1 11111111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHh--hcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC---C--C
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWF--IDRADIIFLVYDPSKLDVGPETEAILDQLKGR---E--Y 248 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~--~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~---~--~ 248 (468)
... .....++||||||+.+.... ... +.+.+..+ ...+|++++|+|.+...++.....+++.+... . .
T Consensus 81 ~~~--~~~~~l~iiDTpG~~~~~~~-~~~--~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~ 155 (270)
T 1h65_A 81 SRS--RAGFTLNIIDTPGLIEGGYI-NDM--ALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWN 155 (270)
T ss_dssp EEE--ETTEEEEEEECCCSEETTEE-CHH--HHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGG
T ss_pred EEe--eCCeEEEEEECCCCCCCccc-hHH--HHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCccccc
Confidence 111 11256999999999764321 111 11122222 34799999998775434565555666665432 1 5
Q ss_pred cEEEEEeCCCCCChH
Q psy13475 249 QTRIILNKADQVKPE 263 (468)
Q Consensus 249 ~iiiVlNK~D~v~~~ 263 (468)
|+++|+||+|+..++
T Consensus 156 ~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 156 KAIVALTHAQFSPPD 170 (270)
T ss_dssp GEEEEEECCSCCCGG
T ss_pred CEEEEEECcccCCcC
Confidence 899999999997543
No 55
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.49 E-value=4e-14 Score=139.27 Aligned_cols=116 Identities=22% Similarity=0.288 Sum_probs=76.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+|+|.|.... ++.. ++++.+...+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~---------------------------------------pg~tv~~~~~ 43 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQR-VGNW---------------------------------------PGVTVERKSG 43 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCC-CCSS---------------------------------------SCCCCSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCc-ccCC---------------------------------------CCCcEEEEEE
Confidence 35999999999999999999997532 2222 2233333333
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhh--cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFI--DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~--~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
.. .. ...+.+|||||..+...... -..+++.++ ..+|++++|+|++.. +....+...+...+.|+++|
T Consensus 44 ~~-~~--~~~l~l~DtpG~~~~~~~~~----~e~v~~~~~~~~~~d~vi~V~D~t~~---e~~~~~~~~l~~~~~p~ilv 113 (272)
T 3b1v_A 44 LV-KK--NKDLEIQDLPGIYSMSPYSP----EAKVARDYLLSQRADSILNVVDATNL---ERNLYLTTQLIETGIPVTIA 113 (272)
T ss_dssp EC-TT--CTTEEEEECCCCSCSSCSSH----HHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHTCSCEEEE
T ss_pred EE-ec--CCeEEEEECCCcCccCCCCh----HHHHHHHHHhcCCCCEEEEEecCCch---HhHHHHHHHHHhcCCCEEEE
Confidence 32 11 36799999999875321100 012234444 379999999999762 33445556666678899999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+..
T Consensus 114 ~NK~Dl~~ 121 (272)
T 3b1v_A 114 LNMIDVLD 121 (272)
T ss_dssp EECHHHHH
T ss_pred EEChhhCC
Confidence 99999753
No 56
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.49 E-value=6.3e-14 Score=137.07 Aligned_cols=117 Identities=23% Similarity=0.271 Sum_probs=76.6
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|++|+|||||+|+|+|... .++.. | +++.+...+
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~----~-----------------------------------~~t~~~~~~ 43 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ-HVGNW----P-----------------------------------GVTVEKKEG 43 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE-EEEEC----T-----------------------------------TSSCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc-ccCCC----C-----------------------------------CeEEEeeEE
Confidence 4699999999999999999999865 22222 1 223332222
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhh--cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC-CcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFI--DRADIIFLVYDPSKLDVGPETEAILDQLKGRE-YQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~--~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~-~~iii 252 (468)
...... ..+.||||||+.+........ ..++.++ ..+|++++|+|++.. .....+...+...+ .|+++
T Consensus 44 ~~~~~~--~~~~l~DtpG~~~~~~~~~~~----~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~~~~p~il 114 (271)
T 3k53_A 44 IMEYRE--KEFLVVDLPGIYSLTAHSIDE----LIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEMEVKNIIL 114 (271)
T ss_dssp EEEETT--EEEEEEECCCCSCCCSSCHHH----HHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHTTCCSEEE
T ss_pred EEEECC--ceEEEEeCCCccccccCCHHH----HHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhcCCCCEEE
Confidence 221122 469999999987543221111 1233444 789999999999863 34444555555566 89999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+..
T Consensus 115 v~NK~Dl~~ 123 (271)
T 3k53_A 115 VLNKFDLLK 123 (271)
T ss_dssp EEECHHHHH
T ss_pred EEEChhcCc
Confidence 999999754
No 57
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=123.99 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=67.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+..+... + |.++... .+
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~----~----------------------------------~~~~~~~--~~ 45 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQ----L----------------------------------GEDVYER--TL 45 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-----CCC----S----------------------------------SSSEEEE--EE
T ss_pred EEEEECCCCccHHHHHHHHhcCCCccccCc----c----------------------------------ccceeEE--EE
Confidence 599999999999999999999877543222 1 1111111 11
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC----CCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR----EYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~----~~~iii 252 (468)
.. ......+.++||||..... +......+...+|++++|+|.+....-+....++..+... +.|+++
T Consensus 46 ~~-~~~~~~~~~~D~~g~~~~~--------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piil 116 (175)
T 2nzj_A 46 TV-DGEDTTLVVVDTWEAEKLD--------KSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIIL 116 (175)
T ss_dssp EE-TTEEEEEEEECCC---------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEE
T ss_pred EE-CCEEEEEEEEecCCCCccc--------hhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEE
Confidence 11 1112468899999975421 1233455678899999999987521111223344444432 579999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+.+.
T Consensus 117 v~NK~Dl~~~ 126 (175)
T 2nzj_A 117 VGNKADLARC 126 (175)
T ss_dssp EEECTTCTTT
T ss_pred EEEChhhccc
Confidence 9999999754
No 58
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.48 E-value=3.9e-14 Score=126.12 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=69.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++.++... ..||+ +.++ ....+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~~-----~~~~~--------------------------------~~~~--~~~~~ 45 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDKFNPS-----FITTI--------------------------------GIDF--KIKTV 45 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCC--------------------------------------------CCE--EEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCC-----CCCcc--------------------------------ceeE--EEEEE
Confidence 499999999999999999999876421 11111 0000 01111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.. ......+.|+||||.... ......++..+|++++|+|++....-.....++..+. ..+.|+++|
T Consensus 46 ~~-~~~~~~~~l~D~~G~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 114 (170)
T 1g16_A 46 DI-NGKKVKLQIWDTAGQERF----------RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLV 114 (170)
T ss_dssp ES-SSCEEEEEEECCTTGGGT----------SCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred EE-CCEEEEEEEEeCCCChhh----------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 21 111246899999995432 2234556789999999999976211112223333333 346799999
Q ss_pred EeCCCCC
Q psy13475 254 LNKADQV 260 (468)
Q Consensus 254 lNK~D~v 260 (468)
+||+|+.
T Consensus 115 ~nK~Dl~ 121 (170)
T 1g16_A 115 GNKSDME 121 (170)
T ss_dssp EECTTCT
T ss_pred EECccCC
Confidence 9999984
No 59
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.48 E-value=1.1e-13 Score=125.81 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=73.8
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+...|+++|.+|+|||||+|+|++.++....+.. | ...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~--------------------------------------~-~~~--- 57 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTI--------------------------------------G-SNV--- 57 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCS--------------------------------------S-SSC---
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcC--------------------------------------c-eee---
Confidence 3445999999999999999999998763222111 1 111
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCc
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQ 249 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~ 249 (468)
..+.. . ...+.|+||||..... .....++..+|++++|+|++....-......+..+. ..+.|
T Consensus 58 ~~~~~-~--~~~~~i~Dt~G~~~~~----------~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p 124 (181)
T 2h17_A 58 EEIVI-N--NTRFLMWDIGGQESLR----------SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 124 (181)
T ss_dssp EEEEE-T--TEEEEEEEESSSGGGT----------CGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE
T ss_pred EEEEE-C--CEEEEEEECCCCHhHH----------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe
Confidence 11111 1 1579999999985422 223445789999999999987321223333344333 24679
Q ss_pred EEEEEeCCCCCC
Q psy13475 250 TRIILNKADQVK 261 (468)
Q Consensus 250 iiiVlNK~D~v~ 261 (468)
+++|+||+|+.+
T Consensus 125 iilv~NK~Dl~~ 136 (181)
T 2h17_A 125 LLIFANKQDVKE 136 (181)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEECCCccc
Confidence 999999999975
No 60
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.48 E-value=4.5e-14 Score=130.83 Aligned_cols=116 Identities=21% Similarity=0.215 Sum_probs=72.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|++..+.. ...||+ ...+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~~~-----~~~~t~------------------------------------~~~~~~ 63 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEFSE-----GYDPTV------------------------------------ENTYSK 63 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCS-----CCCCCS------------------------------------EEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCC-----CCCCcc------------------------------------ceEEEE
Confidence 359999999999999999999987642 111222 111111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC----CCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR----EYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~----~~~ii 251 (468)
..........+.|+||||..... .....++..+|++++|+|++....-.....++..+... +.|++
T Consensus 64 ~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 133 (201)
T 3oes_A 64 IVTLGKDEFHLHLVDTAGQDEYS----------ILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV 133 (201)
T ss_dssp EEC----CEEEEEEEECCCCTTC----------CCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEE
T ss_pred EEEECCEEEEEEEEECCCccchH----------HHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 11112223568999999965431 22344578899999999997621112233444444432 57999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|+||+|+...
T Consensus 134 lv~nK~Dl~~~ 144 (201)
T 3oes_A 134 LVGNKADLSPE 144 (201)
T ss_dssp EEEECTTCGGG
T ss_pred EEEECccCccc
Confidence 99999998643
No 61
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.48 E-value=2.3e-13 Score=120.73 Aligned_cols=111 Identities=17% Similarity=0.230 Sum_probs=73.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++.++.. ..||.. +. ...+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~------~~~t~~-~~-----------------------------------~~~~ 39 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT------TIPTIG-FN-----------------------------------VETV 39 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC------CCCCSS-CC-----------------------------------EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc------ccCcCc-ee-----------------------------------EEEE
Confidence 48999999999999999999876531 123321 00 0111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~iii 252 (468)
.. ....+.++||||... +......++..+|++++|+|++....-......+..+.. .+.|+++
T Consensus 40 ~~---~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piil 106 (164)
T 1r8s_A 40 EY---KNISFTVWDVGGQDK----------IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 106 (164)
T ss_dssp EC---SSCEEEEEECCCCGG----------GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEE
T ss_pred EE---CCEEEEEEEcCCChh----------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEE
Confidence 11 125799999999854 334455668999999999999763111222233433322 3679999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+.+.
T Consensus 107 v~nK~Dl~~~ 116 (164)
T 1r8s_A 107 FANKQDLPNA 116 (164)
T ss_dssp EEECTTSTTC
T ss_pred EEECcCCcCC
Confidence 9999999754
No 62
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.48 E-value=9.5e-14 Score=123.58 Aligned_cols=116 Identities=22% Similarity=0.302 Sum_probs=73.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+... ..|+. |.++ .. ...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~~~~--------------------------------~~~~-~~-~~~ 48 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSFDPN-----INPTI--------------------------------GASF-MT-KTV 48 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCTT-----CCCCC--------------------------------SEEE-EE-EEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCC-----CCCce--------------------------------eEEE-EE-EEE
Confidence 599999999999999999999876421 11111 1111 00 011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.. ......+.++||||... +......++..+|++++|+|++....-.....++..+. ....|+++|
T Consensus 49 ~~-~~~~~~~~~~Dt~G~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv 117 (170)
T 1z0j_A 49 QY-QNELHKFLIWDTAGLER----------FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIA 117 (170)
T ss_dssp EE-TTEEEEEEEEEECCSGG----------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEE
T ss_pred EE-CCeEEEEEEEcCCCchh----------hhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 11 11224689999999853 22345566889999999999976211122233444443 335689999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 118 ~nK~Dl~~~ 126 (170)
T 1z0j_A 118 GNKCDLTDV 126 (170)
T ss_dssp EECTTCGGG
T ss_pred EECCccccc
Confidence 999999754
No 63
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.47 E-value=7.3e-14 Score=124.24 Aligned_cols=114 Identities=17% Similarity=0.106 Sum_probs=60.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|+|.....++.. .+++.... .
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~~~~~~~---------------------------------------~~~~~~~~--~ 42 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEA---------------------------------------AGHTYDRS--I 42 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-------------------------------------------------CEEEEE--E
T ss_pred EEEEECCCCCCHHHHHHHHcCccccCCCCc---------------------------------------cccceEEE--E
Confidence 599999999999999999998876532221 12222111 1
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~iii 252 (468)
.. ......+.++||||.... ......++..+|++++|+|.+....-+....++..+.. .+.|+++
T Consensus 43 ~~-~~~~~~~~i~D~~g~~~~----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 111 (166)
T 3q72_A 43 VV-DGEEASLMVYDIWEQDGG----------RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIIL 111 (166)
T ss_dssp EE-TTEEEEEEEEECC-------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEE
T ss_pred EE-CCEEEEEEEEECCCCccc----------hhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 11 222246889999997542 22344457899999999999762111222233344432 3579999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+.+.
T Consensus 112 v~nK~Dl~~~ 121 (166)
T 3q72_A 112 VGNKSDLVRS 121 (166)
T ss_dssp EEECTTCCSS
T ss_pred EEeccccccc
Confidence 9999998754
No 64
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.47 E-value=1.7e-13 Score=140.26 Aligned_cols=121 Identities=20% Similarity=0.196 Sum_probs=72.5
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
-+.|+++|.+|+|||||+|+|+|.... ++.. ..+|++...
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~-~~~~---------------------------------------~~~T~d~~~ 218 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQK-VDTK---------------------------------------LFTTMSPKR 218 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC---------------------------------------------------CCSCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCcc-ccCC---------------------------------------cccccCCEE
Confidence 346999999999999999999998652 2222 122222222
Q ss_pred E-eecCCCCCcceEEEeCCCCchh--hhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC--CCHh---HHHHHHHHhcC
Q psy13475 175 G-LQLPHPLLEKINIVEIPGILEI--RKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD--VGPE---TEAILDQLKGR 246 (468)
Q Consensus 175 ~-~~~~~~~l~~i~lIDTPGi~~~--~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~--i~~e---~~~ll~~l~~~ 246 (468)
+ +.+++ ..+.++||||+... ...++. | ..+...+..+|++++|+|++... .... ...+++.+...
T Consensus 219 ~~i~~~g---~~v~l~DT~G~i~~lp~~lve~---f-~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~ 291 (364)
T 2qtf_A 219 YAIPINN---RKIMLVDTVGFIRGIPPQIVDA---F-FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVS 291 (364)
T ss_dssp EEEEETT---EEEEEEECCCBCSSCCGGGHHH---H-HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEECC---EEEEEEeCCCchhcCCHHHHHH---H-HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC
Confidence 2 22222 46899999997532 111121 2 23445678999999999987631 1111 12344444435
Q ss_pred CCcEEEEEeCCCCCCh
Q psy13475 247 EYQTRIILNKADQVKP 262 (468)
Q Consensus 247 ~~~iiiVlNK~D~v~~ 262 (468)
+.|+++|+||+|+.+.
T Consensus 292 ~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 292 GKPILVTLNKIDKING 307 (364)
T ss_dssp SCCEEEEEECGGGCCS
T ss_pred CCCEEEEEECCCCCCc
Confidence 6799999999999864
No 65
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=6.5e-14 Score=124.67 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=72.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.. ...||. +.++...+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~~~-----~~~~t~--------------------------------~~~~~~~~--- 44 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGTFRE-----SYIPTV--------------------------------EDTYRQVI--- 44 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCS-----SCCCCS--------------------------------CEEEEEEE---
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-----CCCCCc--------------------------------cccEEEEE---
Confidence 59999999999999999999976531 111221 11221111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc-----CCCcEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG-----REYQTR 251 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~-----~~~~ii 251 (468)
.. ......+.|+||||... +......++..+|++++|+|++.....+....++..+.. .+.|++
T Consensus 45 ~~-~~~~~~~~~~Dt~G~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii 113 (172)
T 2erx_A 45 SC-DKSICTLQITDTTGSHQ----------FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM 113 (172)
T ss_dssp EE-TTEEEEEEEEECCSCSS----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEE
T ss_pred EE-CCEEEEEEEEECCCchh----------hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEE
Confidence 11 12224689999999754 334455667889999999999752111122233333322 257999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|+||+|+.+.
T Consensus 114 ~v~nK~Dl~~~ 124 (172)
T 2erx_A 114 LVGNKCDESPS 124 (172)
T ss_dssp EEEECGGGGGG
T ss_pred EEEEccccccc
Confidence 99999998644
No 66
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.47 E-value=1e-13 Score=123.20 Aligned_cols=115 Identities=18% Similarity=0.279 Sum_probs=72.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.... .|+. +.++. ....
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~~~~~-----~~~~--------------------------------~~~~~--~~~~ 48 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQ-----ESTI--------------------------------GAAFL--TQTV 48 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTC-----CCCS--------------------------------SEEEE--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-----CCcc--------------------------------ceEEE--EEEE
Confidence 5999999999999999999987664211 1111 11110 1111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.. ......+.++||||... +......++..+|++++|+|++....-.....++..+. ....|+++|
T Consensus 49 ~~-~~~~~~~~~~D~~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv 117 (170)
T 1r2q_A 49 CL-DDTTVKFEIWDTAGQER----------YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 117 (170)
T ss_dssp EE-TTEEEEEEEEEECCSGG----------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EE-CCEEEEEEEEeCCCcHH----------hhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 11 11124689999999653 23445667889999999999976211122223333333 235689999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+.+
T Consensus 118 ~nK~Dl~~ 125 (170)
T 1r2q_A 118 GNKADLAN 125 (170)
T ss_dssp EECGGGGG
T ss_pred EECccCcc
Confidence 99999864
No 67
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.47 E-value=4.1e-14 Score=125.71 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=71.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+... ..||+ +..+.. ..+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~~t~--------------------------------~~~~~~--~~~ 47 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIFTKD-----YKKTI--------------------------------GVDFLE--RQI 47 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCCCC-----SSCCC--------------------------------SSSEEE--EEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCC-----CCCce--------------------------------EEEEEE--EEE
Confidence 599999999999999999998766421 11221 001100 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc--CCCcEEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG--REYQTRIIL 254 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~--~~~~iiiVl 254 (468)
.. ......+.|+||||.... ......++..+|++++|+|++....-+....++..+.. .+.|+++|+
T Consensus 48 ~~-~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~ 116 (168)
T 1z2a_A 48 QV-NDEDVRLMLWDTAGQEEF----------DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQ 116 (168)
T ss_dssp EE-TTEEEEEEEECCTTGGGT----------TCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEE
T ss_pred EE-CCEEEEEEEEcCCCcHhH----------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 11 111246899999995432 22345567899999999999762111122233333322 367999999
Q ss_pred eCCCCCC
Q psy13475 255 NKADQVK 261 (468)
Q Consensus 255 NK~D~v~ 261 (468)
||+|+.+
T Consensus 117 nK~Dl~~ 123 (168)
T 1z2a_A 117 NKIDLLD 123 (168)
T ss_dssp ECGGGGG
T ss_pred ECcccCc
Confidence 9999864
No 68
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=127.16 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=74.0
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|++..+..... ||. |.++.. ..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~-----~t~--------------------------------~~~~~~--~~ 66 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSR-----TTI--------------------------------GVEFST--RT 66 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCC-----CCS--------------------------------SEEEEE--EE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCC-----Ccc--------------------------------ceeEEE--EE
Confidence 359999999999999999999987653221 111 111100 11
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~iii 252 (468)
... ......+.|+||||... +......++..+|++++|+|++....-.....++..+.. ...|+++
T Consensus 67 ~~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piil 135 (193)
T 2oil_A 67 VML-GTAAVKAQIWDTAGLER----------YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 135 (193)
T ss_dssp EEE-TTEEEEEEEEEESCCCT----------TCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEE
T ss_pred EEE-CCEEEEEEEEeCCCchh----------hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEE
Confidence 111 12224689999999754 223355668899999999999762111122344444443 3579999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+..
T Consensus 136 v~nK~Dl~~ 144 (193)
T 2oil_A 136 VGNKSDLSQ 144 (193)
T ss_dssp EEECGGGGG
T ss_pred EEECCCccc
Confidence 999999864
No 69
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.47 E-value=7.6e-14 Score=129.61 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=71.7
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+|+|.+|+|||||+|+|++..+... ..||+. ..+ ...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~--------------------------------~~~--~~~ 60 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPS-----FITTIG--------------------------------IDF--KIK 60 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCS-----SSCCCS--------------------------------CCE--EEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc-----cCCccc--------------------------------ceE--EEE
Confidence 34699999999999999999998876421 111110 000 011
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTR 251 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~ii 251 (468)
.+.. ......+.|+||||.... ......++..+|++++|+|++....-.....++..+. ....|++
T Consensus 61 ~~~~-~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 129 (213)
T 3cph_A 61 TVDI-NGKKVKLQLWDTAGQERF----------RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLL 129 (213)
T ss_dssp EEEE-TTEEEEEEEECCTTGGGG----------TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEE
T ss_pred EEEE-CCEEEEEEEEeCCCcHHH----------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 1111 111146899999996432 2234556789999999999876211112223333332 3367999
Q ss_pred EEEeCCCCC
Q psy13475 252 IILNKADQV 260 (468)
Q Consensus 252 iVlNK~D~v 260 (468)
+|+||+|+.
T Consensus 130 lv~nK~Dl~ 138 (213)
T 3cph_A 130 LVGNKSDME 138 (213)
T ss_dssp EEEECTTCS
T ss_pred EEEECCCCc
Confidence 999999984
No 70
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.46 E-value=8.1e-14 Score=125.43 Aligned_cols=116 Identities=20% Similarity=0.296 Sum_probs=66.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.... .||+ +.++ ....+
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-----~~~~--------------------------------~~~~--~~~~~ 50 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDKYSQQY-----KATI--------------------------------GADF--LTKEV 50 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCTTC--------C--------------------------------CCSC--EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccc-----CCcc--------------------------------ceEE--EEEEE
Confidence 5999999999999999999998764211 1111 0011 01112
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---c----CCCc
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---G----REYQ 249 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~----~~~~ 249 (468)
.........+.++||||... +......++..+|++++|+|++....-.....++..+. . .+.|
T Consensus 51 ~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p 120 (182)
T 1ky3_A 51 TVDGDKVATMQVWDTAGQER----------FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120 (182)
T ss_dssp CCSSSCCEEEEEECCC--------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC
T ss_pred EEcCCcEEEEEEEECCCChH----------hhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc
Confidence 22222235689999999543 22334455789999999999976211112223333322 1 4579
Q ss_pred EEEEEeCCCCCC
Q psy13475 250 TRIILNKADQVK 261 (468)
Q Consensus 250 iiiVlNK~D~v~ 261 (468)
+++|+||+|+..
T Consensus 121 ~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 121 FVILGNKIDAEE 132 (182)
T ss_dssp EEEEEECTTSCG
T ss_pred EEEEEECCcccc
Confidence 999999999864
No 71
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.46 E-value=5.7e-13 Score=122.04 Aligned_cols=112 Identities=15% Similarity=0.219 Sum_probs=72.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|+|++.++.. ...||+. .+ +..+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~t~~--------------------------------~~----~~~~ 62 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQFNE-----DMIPTVG--------------------------------FN----MRKI 62 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCC-----SCCCCCS--------------------------------EE----EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-----ccCCCCc--------------------------------ee----EEEE
Confidence 49999999999999999999877641 1122211 11 1111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~iii 252 (468)
.. ....+.|+||||... +......++..+|++++|+|++....-......+..+.. .+.|+++
T Consensus 63 ~~---~~~~~~l~Dt~G~~~----------~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piil 129 (188)
T 1zd9_A 63 TK---GNVTIKLWDIGGQPR----------FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLV 129 (188)
T ss_dssp EE---TTEEEEEEEECCSHH----------HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEE
T ss_pred Ee---CCEEEEEEECCCCHh----------HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 11 125789999999754 223355667899999999999763211222233333322 4679999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+...
T Consensus 130 v~NK~Dl~~~ 139 (188)
T 1zd9_A 130 LGNKRDLPGA 139 (188)
T ss_dssp EEECTTSTTC
T ss_pred EEECCCCccC
Confidence 9999999753
No 72
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.46 E-value=2.4e-13 Score=123.16 Aligned_cols=114 Identities=13% Similarity=0.242 Sum_probs=70.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|+|++..+.. ...||+.. ......
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~~~~-----~~~~t~~~-----------------------------------~~~~~~ 59 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKIFVD-----DYDPTIED-----------------------------------SYLKHT 59 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCS-----CCCTTCCE-----------------------------------EEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-----CCCCCccc-----------------------------------eeEEEE
Confidence 49999999999999999999876532 11122111 001111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHH----HHHhcCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAIL----DQLKGREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll----~~l~~~~~~iii 252 (468)
.. ......+.++||||... +......++..+|++++|+|++....-.....++ ......+.|+++
T Consensus 60 ~~-~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 128 (183)
T 3kkq_A 60 EI-DNQWAILDVLDTAGQEE----------FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 128 (183)
T ss_dssp EE-TTEEEEEEEEECCSCGG----------GCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEE
T ss_pred Ee-CCcEEEEEEEECCCchh----------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 11 22123477899999643 2233456678899999999997621011122222 333345679999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+.+
T Consensus 129 v~nK~Dl~~ 137 (183)
T 3kkq_A 129 VANKVDLMH 137 (183)
T ss_dssp EEECTTCST
T ss_pred EEECCCchh
Confidence 999999865
No 73
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=126.93 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=72.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|++..+.. ...||+... + ...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~t~~~~--------------------------------~---~~~ 54 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDEFVE-----DYEPTKADS--------------------------------Y---RKK 54 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT-----TCCTTCCEE--------------------------------E---EEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCC-----CCCCccceE--------------------------------E---EEE
Confidence 359999999999999999999887532 112222110 0 011
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~ii 251 (468)
+.. ......+.|+||||... +......++..+|++++|+|++....-.....++..+. ..+.|++
T Consensus 55 ~~~-~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 123 (206)
T 2bov_A 55 VVL-DGEEVQIDILDTAGQED----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 123 (206)
T ss_dssp EEE-TTEEEEEEEEECCCTTC----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE
T ss_pred EEE-CCEEEEEEEEcCCChhh----------hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 111 11123689999999653 33445666889999999999976211112222333332 2367999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|+||+|+.+.
T Consensus 124 lv~nK~Dl~~~ 134 (206)
T 2bov_A 124 LVGNKSDLEDK 134 (206)
T ss_dssp EEEECTTCGGG
T ss_pred EEEeccCcccc
Confidence 99999998653
No 74
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.46 E-value=6.6e-14 Score=124.82 Aligned_cols=115 Identities=21% Similarity=0.274 Sum_probs=68.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+... ..||+ +.++. ....
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~~~~-----~~~t~--------------------------------~~~~~--~~~~ 48 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENKFNDK-----HITTL--------------------------------GASFL--TKKL 48 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCCSS-----CCCCC--------------------------------SCEEE--EEEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCcC-----CCCcc--------------------------------ceEEE--EEEE
Confidence 599999999999999999998866421 11211 01110 0111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.. ......+.++||||..... .....++..+|++++|+|++....-.....++..+. ....|+++|
T Consensus 49 ~~-~~~~~~l~i~Dt~G~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 117 (170)
T 1z08_A 49 NI-GGKRVNLAIWDTAGQERFH----------ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV 117 (170)
T ss_dssp ES-SSCEEEEEEEECCCC-----------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEE
T ss_pred EE-CCEEEEEEEEECCCcHhhh----------hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 11 1222468899999965421 223334789999999999876211112223333332 245799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+.+
T Consensus 118 ~nK~Dl~~ 125 (170)
T 1z08_A 118 GNKIDLEK 125 (170)
T ss_dssp EECGGGGG
T ss_pred EECccccc
Confidence 99999864
No 75
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.46 E-value=3.5e-13 Score=125.73 Aligned_cols=115 Identities=19% Similarity=0.271 Sum_probs=73.1
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+++|.+|+|||||+|+|++..+... . .+++.. +.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~~--~---~~~~~~-------------------------------------~~ 44 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDT--Q---TSITDS-------------------------------------SA 44 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCCCB--C---CCCSCE-------------------------------------EE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc--c---CCccee-------------------------------------eE
Confidence 45699999999999999999998875321 1 111111 11
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH---------hc
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL---------KG 245 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l---------~~ 245 (468)
.+.+.......+.|+||||...... .....++..+|++++|+|++.. ......+.+.+ ..
T Consensus 45 ~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~ 113 (214)
T 2fh5_B 45 IYKVNNNRGNSLTLIDLPGHESLRF---------QLLDRFKSSARAVVFVVDSAAF--QREVKDVAEFLYQVLIDSMALK 113 (214)
T ss_dssp EEECSSTTCCEEEEEECCCCHHHHH---------HHHHHHGGGEEEEEEEEETTTH--HHHHHHHHHHHHHHHHHHHTST
T ss_pred EEEecCCCccEEEEEECCCChhHHH---------HHHHHHHhhCCEEEEEEECCCc--CHHHHHHHHHHHHHHhhhhhcc
Confidence 1222222135799999999864321 1345568899999999999752 22222222211 13
Q ss_pred CCCcEEEEEeCCCCCCh
Q psy13475 246 REYQTRIILNKADQVKP 262 (468)
Q Consensus 246 ~~~~iiiVlNK~D~v~~ 262 (468)
.+.|+++|+||+|+...
T Consensus 114 ~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 114 NSPSLLIACNKQDIAMA 130 (214)
T ss_dssp TCCEEEEEEECTTSTTC
T ss_pred cCCCEEEEEECCCCCCc
Confidence 35799999999999754
No 76
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.46 E-value=6.2e-14 Score=125.86 Aligned_cols=116 Identities=16% Similarity=0.289 Sum_probs=71.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|+|++..+... ..|++. ..+ ....+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~~~~~-----~~~~~~--------------------------------~~~--~~~~~ 56 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDSFDNT-----YQATIG--------------------------------IDF--LSKTM 56 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSS-----CCCCCS--------------------------------EEE--EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC-----CCCcee--------------------------------eEE--EEEEE
Confidence 599999999999999999998766421 112211 000 00111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.. ......+.|+||||.... ......++..+|++++|+|++....-.....++..+. ....|+++|
T Consensus 57 ~~-~~~~~~~~~~Dt~G~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv 125 (179)
T 2y8e_A 57 YL-EDRTVRLQLWDTAGQERF----------RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLV 125 (179)
T ss_dssp EE-TTEEEEEEEEEECCSGGG----------GGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEE
T ss_pred EE-CCeEEEEEEEECCCcHHH----------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 11 111246899999996542 2334556789999999999975211112223333332 346799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 126 ~nK~Dl~~~ 134 (179)
T 2y8e_A 126 GNKTDLSDK 134 (179)
T ss_dssp EECGGGGGG
T ss_pred EECCccccc
Confidence 999998643
No 77
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.46 E-value=8.7e-13 Score=119.95 Aligned_cols=112 Identities=19% Similarity=0.215 Sum_probs=72.5
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+|+|++.+.. ...||+. . ....
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~~~------~~~~t~~---------------------------------~---~~~~ 56 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGEDVD------TISPTLG---------------------------------F---NIKT 56 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCCCS------SCCCCSS---------------------------------E---EEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC------cccccCc---------------------------------c---ceEE
Confidence 35999999999999999999987621 1123221 0 0111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~ii 251 (468)
+.. . ...+.++||||..... .....++..+|++++|+|++....-++....+..+.. .+.|++
T Consensus 57 ~~~-~--~~~~~~~Dt~G~~~~~----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 123 (186)
T 1ksh_A 57 LEH-R--GFKLNIWDVGGQKSLR----------SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL 123 (186)
T ss_dssp EEE-T--TEEEEEEEECCSHHHH----------TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE
T ss_pred EEE-C--CEEEEEEECCCCHhHH----------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEE
Confidence 121 1 2579999999985432 2234457899999999999763211222233433322 357999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|+||+|+.+.
T Consensus 124 lv~nK~Dl~~~ 134 (186)
T 1ksh_A 124 IFANKQDLPGA 134 (186)
T ss_dssp EEEECTTSTTC
T ss_pred EEEeCccCCCC
Confidence 99999999754
No 78
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.45 E-value=6e-12 Score=128.09 Aligned_cols=127 Identities=19% Similarity=0.273 Sum_probs=76.6
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
..+.|+++|.+|||||||+|+|+|.... ++.. | .++....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~~~----~-----------------------------------~~t~~~~ 205 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE-IASY----P-----------------------------------FTTRGIN 205 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE-EECC----T-----------------------------------TCSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCC----C-----------------------------------Ceeecee
Confidence 4557999999999999999999997642 1111 1 1111111
Q ss_pred EE-eecCCCCCcceEEEeCCCCchhhhh-hhhccchhHHHHHhhcccCEEEEEEcCCCCC-CC-HhHHHHHHHHhc--CC
Q psy13475 174 RG-LQLPHPLLEKINIVEIPGILEIRKQ-VERQFPFNDACQWFIDRADIIFLVYDPSKLD-VG-PETEAILDQLKG--RE 247 (468)
Q Consensus 174 ~~-~~~~~~~l~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~-i~-~e~~~ll~~l~~--~~ 247 (468)
.. ... . ...+.++||||+...... .+.. .......+...+|.+++|+|++... ++ .+...++..+.. .+
T Consensus 206 ~~~~~~-~--~~~~~l~Dt~G~~~~~~~~~~~~--~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~ 280 (357)
T 2e87_A 206 VGQFED-G--YFRYQIIDTPGLLDRPISERNEI--EKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD 280 (357)
T ss_dssp EEEEEE-T--TEEEEEEECTTTSSSCSTTSCHH--HHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTT
T ss_pred EEEEEe-c--CceEEEEeCCCccccchhhhhHH--HHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCC
Confidence 11 111 1 246899999999753211 1111 0122234455799999999986521 12 223345554443 26
Q ss_pred CcEEEEEeCCCCCChHHH
Q psy13475 248 YQTRIILNKADQVKPEEL 265 (468)
Q Consensus 248 ~~iiiVlNK~D~v~~~el 265 (468)
.|+++|+||+|+....++
T Consensus 281 ~piilV~NK~Dl~~~~~~ 298 (357)
T 2e87_A 281 LPFLVVINKIDVADEENI 298 (357)
T ss_dssp SCEEEEECCTTTCCHHHH
T ss_pred CCEEEEEECcccCChHHH
Confidence 899999999999876554
No 79
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.45 E-value=1e-13 Score=124.73 Aligned_cols=116 Identities=21% Similarity=0.264 Sum_probs=71.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.... .||+ +..+ ....+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~~~~~~-----~~t~--------------------------------~~~~--~~~~~ 48 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQETFGKQY-----KQTI--------------------------------GLDF--FLRRI 48 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGGTTHHH-----HHTT--------------------------------TSSE--EEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHhCcCCCCC-----CCce--------------------------------eEEE--EEEEE
Confidence 5999999999999999999987664210 0111 0000 01112
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc-----CCCc-E
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG-----REYQ-T 250 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~-----~~~~-i 250 (468)
..+......+.++||||... +......++..+|++++|+|++....-.....++..+.. ...| +
T Consensus 49 ~~~~~~~~~~~~~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~i 118 (178)
T 2hxs_A 49 TLPGNLNVTLQIWDIGGQTI----------GGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLV 118 (178)
T ss_dssp EETTTEEEEEEEEECTTCCT----------TCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEE
T ss_pred EeCCCCEEEEEEEECCCCcc----------ccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeE
Confidence 22221225699999999653 223455668899999999999762111122233333332 1345 8
Q ss_pred EEEEeCCCCCC
Q psy13475 251 RIILNKADQVK 261 (468)
Q Consensus 251 iiVlNK~D~v~ 261 (468)
++|+||+|+.+
T Consensus 119 ilv~nK~Dl~~ 129 (178)
T 2hxs_A 119 ALVGNKIDLEH 129 (178)
T ss_dssp EEEEECGGGGG
T ss_pred EEEEEcccccc
Confidence 99999999864
No 80
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.45 E-value=2.7e-13 Score=139.12 Aligned_cols=117 Identities=22% Similarity=0.315 Sum_probs=79.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|++||.||||||||+|+|+|.+.. ++.. +.||++...++
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~-v~~~---------------------------------------pftT~~~~~g~ 113 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESE-AAEY---------------------------------------EFTTLVTVPGV 113 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCC-GGGT---------------------------------------CSSCCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCc-ccCC---------------------------------------CCceeeeeeEE
Confidence 6999999999999999999997643 2333 46777777666
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc-----CCCcEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG-----REYQTR 251 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~-----~~~~ii 251 (468)
....+ .++.|+||||+..+... .++ ........+++||+|++|+|++. ++ .....+...|.. ...|.+
T Consensus 114 ~~~~~--~~i~l~D~pGl~~~a~~-~~~--~g~~~l~~i~~ad~il~vvD~~~-p~-~~~~~i~~EL~~~~~~l~~k~~~ 186 (376)
T 4a9a_A 114 IRYKG--AKIQMLDLPGIIDGAKD-GRG--RGKQVIAVARTCNLLFIILDVNK-PL-HHKQIIEKELEGVGIRLNKTPPD 186 (376)
T ss_dssp EEETT--EEEEEEECGGGCCC------C--HHHHHHHHHHHCSEEEEEEETTS-HH-HHHHHHHHHHHHTTEEETCCCCC
T ss_pred EEeCC--cEEEEEeCCCccCCchh-hhH--HHHHHHHHHHhcCccccccccCc-cH-HHHHHHHHHHHHhhHhhccCChh
Confidence 53333 68999999999865432 222 22445566889999999999975 22 112222233332 246888
Q ss_pred EEEeCCCCC
Q psy13475 252 IILNKADQV 260 (468)
Q Consensus 252 iVlNK~D~v 260 (468)
+|+||+|.-
T Consensus 187 i~~nK~d~~ 195 (376)
T 4a9a_A 187 ILIKKKEKG 195 (376)
T ss_dssp EEEEECSSS
T ss_pred hhhhHhhhh
Confidence 999999963
No 81
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.44 E-value=7.1e-14 Score=126.49 Aligned_cols=116 Identities=17% Similarity=0.148 Sum_probs=69.2
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+|+|++..+.. . ..||+. ..+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~~~--~---~~~t~~------------------------------------~~~~~ 45 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQFVD--S---YDPTIE------------------------------------NTFTK 45 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS--C---CCTTCC------------------------------------EEEEE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCC--C---CCCCcc------------------------------------ccEEE
Confidence 469999999999999999999766531 1 112221 11111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHH----HHHhcCCCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAIL----DQLKGREYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll----~~l~~~~~~ii 251 (468)
..........+.|+||||..... .....++..+|++++|+|.+....-+....++ +.+...+.|++
T Consensus 46 ~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i 115 (181)
T 3t5g_A 46 LITVNGQEYHLQLVDTAGQDEYS----------IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 115 (181)
T ss_dssp EEEETTEEEEEEEEECCCCCTTC----------CCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEE
T ss_pred EEEECCEEEEEEEEeCCCchhhh----------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 11112222457899999976531 12334478899999999997621111122222 22233467999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|+||+|+.+.
T Consensus 116 lv~nK~Dl~~~ 126 (181)
T 3t5g_A 116 LVGNKKDLHME 126 (181)
T ss_dssp EEEECTTCTTT
T ss_pred EEEECccchhc
Confidence 99999998643
No 82
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=4.2e-13 Score=122.50 Aligned_cols=111 Identities=19% Similarity=0.266 Sum_probs=71.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+|+|++.++.... ||. +.+ ...
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~------~t~--------------------------------~~~----~~~ 54 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVVHTS------PTI--------------------------------GSN----VEE 54 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCEEEE------CCS--------------------------------CSS----CEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCcCc------CCC--------------------------------ccc----eEE
Confidence 36999999999999999999987664211 111 100 011
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~ii 251 (468)
+.. . ...+.++||||.... ......++..+|++++|+|++....-......+..+.. .+.|++
T Consensus 55 ~~~-~--~~~~~i~Dt~G~~~~----------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 121 (187)
T 1zj6_A 55 IVI-N--NTRFLMWDIGGQESL----------RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL 121 (187)
T ss_dssp EEE-T--TEEEEEEECCC--------------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred EEE-C--CEEEEEEECCCCHhH----------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEE
Confidence 111 1 257999999998542 22345567899999999999873212233344444433 467999
Q ss_pred EEEeCCCCCC
Q psy13475 252 IILNKADQVK 261 (468)
Q Consensus 252 iVlNK~D~v~ 261 (468)
+|+||+|+.+
T Consensus 122 lv~NK~Dl~~ 131 (187)
T 1zj6_A 122 IFANKQDVKE 131 (187)
T ss_dssp EEEECTTSTT
T ss_pred EEEECCCCcC
Confidence 9999999975
No 83
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=1.9e-13 Score=125.37 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=71.7
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+|+|++..+... ..||. +.++...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-----~~~t~--------------------------------~~~~~~~--- 48 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRDT-----YIPTI--------------------------------EDTYRQV--- 48 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCT-----TSCCC--------------------------------CEEEEEE---
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCc-----ccCcc--------------------------------ccceeEE---
Confidence 3599999999999999999998766421 11221 1111111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHh---HHHHHHHHhc--CCCcE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPE---TEAILDQLKG--REYQT 250 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e---~~~ll~~l~~--~~~~i 250 (468)
... ......+.|+||||... +......++..+|++++|+|++....-.. ....+..+.. .+.|+
T Consensus 49 ~~~-~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pi 117 (199)
T 2gf0_A 49 ISC-DKSVCTLQITDTTGSHQ----------FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117 (199)
T ss_dssp EEE-TTEEEEEEEEECCGGGS----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCE
T ss_pred EEE-CCEEEEEEEEeCCChHH----------hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 111 12224689999999643 23445566788999999999875211111 1222333332 25699
Q ss_pred EEEEeCCCCCC
Q psy13475 251 RIILNKADQVK 261 (468)
Q Consensus 251 iiVlNK~D~v~ 261 (468)
++|+||+|+..
T Consensus 118 ilv~nK~Dl~~ 128 (199)
T 2gf0_A 118 MLVGNKCDETQ 128 (199)
T ss_dssp EEEEECTTCSS
T ss_pred EEEEECccCCc
Confidence 99999999875
No 84
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.44 E-value=1.2e-13 Score=126.80 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=71.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|+|++.++..... ||+ +.++. ...+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~~~~~~~-----~t~--------------------------------~~~~~--~~~~ 63 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHD-----LTI--------------------------------GVEFG--ARMV 63 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC----------C--------------------------------CSSEE--EEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC-----Ccc--------------------------------cceeE--EEEE
Confidence 49999999999999999999987653211 110 11111 1111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.. ......+.|+||||... +......++..+|++++|+|++....-.....++..+. ..+.|+++|
T Consensus 64 ~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv 132 (191)
T 2a5j_A 64 NI-DGKQIKLQIWDTAGQES----------FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLI 132 (191)
T ss_dssp EE-TTEEEEEEEECCTTGGG----------TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred EE-CCEEEEEEEEECCCchh----------hhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 11 11124689999999543 22234556789999999999976211112233444443 236799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+.+
T Consensus 133 ~nK~Dl~~ 140 (191)
T 2a5j_A 133 GNKSDLES 140 (191)
T ss_dssp EECTTCGG
T ss_pred EECcccCC
Confidence 99999864
No 85
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.44 E-value=8.7e-14 Score=145.07 Aligned_cols=123 Identities=22% Similarity=0.305 Sum_probs=81.1
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
....|+|+|.+|+|||||+|+|++.+++.++... ++|.+..
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~---------------------------------------gtT~d~~ 73 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYA---------------------------------------GTTTDPV 73 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC----------------------------------------------------CCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCC---------------------------------------CeeeeeE
Confidence 3446999999999999999999998875433321 1222211
Q ss_pred -EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEE
Q psy13475 174 -RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRI 252 (468)
Q Consensus 174 -~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iii 252 (468)
....... ...+.||||||+.+.... ... ..+.+..++..+|++++|+|+ +..+....++..+...+.|+++
T Consensus 74 ~~~~~~~~--~~~l~liDTpG~~d~~~l-~~~--~~~~~~~~l~~aD~vllVvD~---~~~~~~~~~l~~l~~~~~piIv 145 (423)
T 3qq5_A 74 YKSMELHP--IGPVTLVDTPGLDDVGEL-GRL--RVEKARRVFYRADCGILVTDS---APTPYEDDVVNLFKEMEIPFVV 145 (423)
T ss_dssp EEEEEETT--TEEEEEEECSSTTCCCTT-CCC--CHHHHHHHHTSCSEEEEECSS---SCCHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECC--CCeEEEEECcCCCcccch-hHH--HHHHHHHHHhcCCEEEEEEeC---CChHHHHHHHHHHHhcCCCEEE
Confidence 1122111 137999999999764321 111 234566778999999999999 3467778888888888899999
Q ss_pred EEeCCCCCChH
Q psy13475 253 ILNKADQVKPE 263 (468)
Q Consensus 253 VlNK~D~v~~~ 263 (468)
|+||+|+.+..
T Consensus 146 V~NK~Dl~~~~ 156 (423)
T 3qq5_A 146 VVNKIDVLGEK 156 (423)
T ss_dssp ECCCCTTTTCC
T ss_pred EEeCcCCCCcc
Confidence 99999997543
No 86
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.44 E-value=4.6e-13 Score=122.23 Aligned_cols=113 Identities=21% Similarity=0.256 Sum_probs=73.5
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+++|.+|||||||+|+|.+..+..+.+.+ | .+ ..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~--------------------------------------g-~~---~~ 53 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQ--------------------------------------G-FN---IK 53 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEET--------------------------------------T-EE---EE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcC--------------------------------------C-eE---EE
Confidence 346999999999999999999987654222111 1 11 11
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH-h---cCCCcE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL-K---GREYQT 250 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l-~---~~~~~i 250 (468)
.+... ...+.++||||... +......++..+|++++|+|++....-.+....+..+ . ..+.|+
T Consensus 54 ~~~~~---~~~l~i~Dt~G~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 120 (181)
T 1fzq_A 54 SVQSQ---GFKLNVWDIGGQRK----------IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV 120 (181)
T ss_dssp EEEET---TEEEEEEECSSCGG----------GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCE
T ss_pred EEEEC---CEEEEEEECCCCHH----------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCE
Confidence 12221 25789999999754 2234556678999999999997621111222333333 2 245799
Q ss_pred EEEEeCCCCCCh
Q psy13475 251 RIILNKADQVKP 262 (468)
Q Consensus 251 iiVlNK~D~v~~ 262 (468)
++|+||+|+.+.
T Consensus 121 ilv~NK~Dl~~~ 132 (181)
T 1fzq_A 121 LIFANKQDLLTA 132 (181)
T ss_dssp EEEEECTTSTTC
T ss_pred EEEEECcCcccC
Confidence 999999999754
No 87
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=1e-13 Score=127.29 Aligned_cols=117 Identities=20% Similarity=0.217 Sum_probs=74.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+|+|.+|+|||||+|+|++..+......+ + +.++ . ..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t---~----------------------------------~~~~-~-~~ 63 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVST---V----------------------------------GIDF-K-VK 63 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEE---E----------------------------------TTTE-E-EE
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCC---e----------------------------------eeEE-E-EE
Confidence 345999999999999999999987654211110 0 1111 1 11
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTR 251 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~ii 251 (468)
.... ......+.|+||||... +......++..+|++++|+|++....-.....++..+.. .+.|++
T Consensus 64 ~~~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii 132 (191)
T 3dz8_A 64 TVYR-HEKRVKLQIWDTAGQER----------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI 132 (191)
T ss_dssp EEEE-TTTTEEEEEECHHHHHH----------CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE
T ss_pred EEEE-CCEEEEEEEEeCCChHH----------HHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 1111 22235699999999432 334566778999999999999752111223334444433 467999
Q ss_pred EEEeCCCCCC
Q psy13475 252 IILNKADQVK 261 (468)
Q Consensus 252 iVlNK~D~v~ 261 (468)
+|+||+|+.+
T Consensus 133 lv~nK~Dl~~ 142 (191)
T 3dz8_A 133 LVGNKCDMEE 142 (191)
T ss_dssp EEEECTTCGG
T ss_pred EEEECCCCcc
Confidence 9999999864
No 88
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.44 E-value=2.4e-13 Score=124.09 Aligned_cols=115 Identities=16% Similarity=0.214 Sum_probs=66.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+|+|++..+... ..||+ ...+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-----~~~t~------------------------------------~~~~~~ 60 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVDE-----YDPTI------------------------------------EDSYRK 60 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSC-----CCTTC------------------------------------CEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCccc-----cCCcc------------------------------------ceEEEE
Confidence 3599999999999999999998765321 11111 111111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~ii 251 (468)
..........+.|+||||... +......++..+|++++|+|++....-.....++..+. ..+.|++
T Consensus 61 ~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i 130 (190)
T 3con_A 61 QVVIDGETCLLDILDTAGQEE----------YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130 (190)
T ss_dssp EEEETTEEEEEEEEECCC---------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE
T ss_pred EEEECCEEEEEEEEECCChHH----------HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 111112124589999999653 22334556889999999999976211112222333332 2467999
Q ss_pred EEEeCCCCCC
Q psy13475 252 IILNKADQVK 261 (468)
Q Consensus 252 iVlNK~D~v~ 261 (468)
+|+||+|+..
T Consensus 131 lv~nK~Dl~~ 140 (190)
T 3con_A 131 LVGNKCDLPT 140 (190)
T ss_dssp EEEECTTCSC
T ss_pred EEEECCcCCc
Confidence 9999999875
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.44 E-value=2.6e-13 Score=124.28 Aligned_cols=116 Identities=21% Similarity=0.252 Sum_probs=72.7
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+...|+|+|.+|+|||||+|+|++...... ...||+. + ..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~~t~~-~-----------------------------------~~ 59 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQ----NILPTIG-F-----------------------------------SI 59 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCS----SCCCCSS-E-----------------------------------EE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCC----CcCCccc-e-----------------------------------eE
Confidence 344599999999999999999999873211 1122221 1 11
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH-hc-----CC
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL-KG-----RE 247 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l-~~-----~~ 247 (468)
..+... ...+.|+||||..... .....++..+|++++|+|++....-......+..+ .. .+
T Consensus 60 ~~~~~~---~~~~~l~Dt~G~~~~~----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 126 (190)
T 2h57_A 60 EKFKSS---SLSFTVFDMSGQGRYR----------NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRR 126 (190)
T ss_dssp EEEECS---SCEEEEEEECCSTTTG----------GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSC
T ss_pred EEEEEC---CEEEEEEECCCCHHHH----------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCC
Confidence 112221 2579999999965422 22344578999999999997621011222233333 22 36
Q ss_pred CcEEEEEeCCCCCCh
Q psy13475 248 YQTRIILNKADQVKP 262 (468)
Q Consensus 248 ~~iiiVlNK~D~v~~ 262 (468)
.|+++|+||+|+.+.
T Consensus 127 ~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 127 IPILFFANKMDLRDA 141 (190)
T ss_dssp CCEEEEEECTTSTTC
T ss_pred CeEEEEEeCcCcccC
Confidence 799999999999753
No 90
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.44 E-value=2.7e-13 Score=121.84 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=70.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.. ...||+. .++. ....
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~--------------------------------~~~~--~~~~ 49 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNKFDT-----QLFHTIG--------------------------------VEFL--NKDL 49 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCC---------CCS--------------------------------EEEE--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-----CCCCcee--------------------------------eeEE--EEEE
Confidence 59999999999999999999876532 1112111 1110 0111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---c----CCCc
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---G----REYQ 249 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~----~~~~ 249 (468)
.. ......+.|+||||... +......++..+|++++|+|++....-.....++..+. . .+.|
T Consensus 50 ~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p 118 (177)
T 1wms_A 50 EV-DGHFVTMQIWDTAGQER----------FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118 (177)
T ss_dssp EE-TTEEEEEEEEECCCCGG----------GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC
T ss_pred EE-CCEEEEEEEEeCCCchh----------hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc
Confidence 11 11124689999999654 22334556889999999999976211111222333322 1 4579
Q ss_pred EEEEEeCCCCCC
Q psy13475 250 TRIILNKADQVK 261 (468)
Q Consensus 250 iiiVlNK~D~v~ 261 (468)
+++|+||+|+..
T Consensus 119 ~i~v~nK~Dl~~ 130 (177)
T 1wms_A 119 FVILGNKIDISE 130 (177)
T ss_dssp EEEEEECTTCSS
T ss_pred EEEEEECCcccc
Confidence 999999999863
No 91
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.2e-13 Score=126.58 Aligned_cols=121 Identities=17% Similarity=0.275 Sum_probs=72.9
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
..+.|+++|.+|+|||||+|+|++..+... ..+..|+ ++.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~--~~~~~~~-----------------------------------~~~~~- 88 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT--VVSQEPL-----------------------------------SAADY- 88 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------------------------------------CC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcc--cccCCCc-----------------------------------eeeee-
Confidence 456799999999999999999999865320 0001111 11000
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH---HHHHHH-------
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE---AILDQL------- 243 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~---~ll~~l------- 243 (468)
....+.|+||||....... ........+..+|++++|+|++. + ...+. ..+..+
T Consensus 89 --------~~~~~~l~Dt~G~~~~~~~------~~~~~~~~~~~~~~~i~v~d~~~-~-~~~~~~~~~~~~~~~~~~~~~ 152 (193)
T 2ged_A 89 --------DGSGVTLVDFPGHVKLRYK------LSDYLKTRAKFVKGLIFMVDSTV-D-PKKLTTTAEFLVDILSITESS 152 (193)
T ss_dssp --------CCTTCSEEEETTCCBSSCC------HHHHHHHHGGGEEEEEEEEETTC-C-HHHHHHHHHHHHHHHHHHHHH
T ss_pred --------cCCeEEEEECCCCchHHHH------HHHHHHhhcccCCEEEEEEECCC-C-chhHHHHHHHHHHHHhhhhhc
Confidence 1256899999998654221 12223444567999999999972 1 12222 222221
Q ss_pred hcCCCcEEEEEeCCCCCChHHHHHH
Q psy13475 244 KGREYQTRIILNKADQVKPEELMRV 268 (468)
Q Consensus 244 ~~~~~~iiiVlNK~D~v~~~el~~v 268 (468)
...+.|+++|+||+|+.+......+
T Consensus 153 ~~~~~p~ilv~nK~Dl~~~~~~~~~ 177 (193)
T 2ged_A 153 CENGIDILIACNKSELFTARPPSKI 177 (193)
T ss_dssp STTCCCEEEEEECTTSTTCCCHHHH
T ss_pred cccCCCEEEEEEchHhcCCCCHHHH
Confidence 1236899999999999865443333
No 92
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.44 E-value=1.3e-13 Score=123.00 Aligned_cols=116 Identities=14% Similarity=0.119 Sum_probs=64.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++......... .++. ... ...+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~~~~~~~---~~~~---------------------------------~~~---~~~~ 44 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEM---ENSE---------------------------------DTY---ERRI 44 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC------------------------------------------------CEE---EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhccCcccccC---CCcC---------------------------------Cee---eEEE
Confidence 499999999999999999998765432111 0100 000 0111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~iii 252 (468)
.. ......+.++||||....... ....++..+|++++|+|++....-......+..+.. .+.|+++
T Consensus 45 ~~-~~~~~~~~i~D~~g~~~~~~~---------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 114 (169)
T 3q85_A 45 MV-DKEEVTLIVYDIWEQGDAGGW---------LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 114 (169)
T ss_dssp EE-TTEEEEEEEECCCCC-----------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEE
T ss_pred EE-CCeEEEEEEEECCCccccchh---------hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEE
Confidence 11 222246889999998653221 122346679999999999762111122233333322 3679999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+.+
T Consensus 115 v~nK~Dl~~ 123 (169)
T 3q85_A 115 VGNKSDLAR 123 (169)
T ss_dssp EEECTTCGG
T ss_pred EeeCcchhh
Confidence 999999864
No 93
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.44 E-value=5.1e-14 Score=145.76 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=20.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.|+|+|.+|||||||+|+|+|.+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999987
No 94
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.43 E-value=1.5e-13 Score=123.62 Aligned_cols=116 Identities=15% Similarity=0.220 Sum_probs=72.7
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+|+|++..+.. ...||+ ...+..
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~~t~------------------------------------~~~~~~ 48 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYFVS-----DYDPTI------------------------------------EDSYTK 48 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCCS-----SCCTTC------------------------------------CEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc-----ccCCCc------------------------------------CceEEE
Confidence 459999999999999999999985531 112222 111111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHH----HHHhcCCCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAIL----DQLKGREYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll----~~l~~~~~~ii 251 (468)
..........+.|+||||... +......++..+|++++|+|++....-......+ ......+.|++
T Consensus 49 ~~~~~~~~~~~~~~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 118 (181)
T 2fn4_A 49 ICSVDGIPARLDILDTAGQEE----------FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV 118 (181)
T ss_dssp EEEETTEEEEEEEEECCCTTT----------TSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEE
T ss_pred EEEECCEEEEEEEEECCCchh----------hHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 111112124688999999654 2233455678899999999997621111222222 33334567999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|+||+|+.+.
T Consensus 119 lv~nK~Dl~~~ 129 (181)
T 2fn4_A 119 LVGNKADLESQ 129 (181)
T ss_dssp EEEECGGGGGG
T ss_pred EEEECcccccc
Confidence 99999998653
No 95
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.43 E-value=4.3e-13 Score=133.88 Aligned_cols=149 Identities=19% Similarity=0.216 Sum_probs=87.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE-E
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR-G 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~-~ 175 (468)
.|+++|.+|||||||+|+|++...+.++... ++|..... .
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~---------------------------------------~~Ti~~~~~~ 45 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRL---------------------------------------GATIDVEHSH 45 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSCCCTGGGGGC---------------------------------------CCCCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCccccCc---------------------------------------CCccceEEEE
Confidence 4999999999999999999997554333221 12221111 1
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHH---HHHHHhc--CCCcE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEA---ILDQLKG--REYQT 250 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~---ll~~l~~--~~~~i 250 (468)
..+.. ...+.+|||||....... . +......++..+|++++|+|++....-..... .+..+.. .+.|+
T Consensus 46 ~~~~~--~~~l~i~Dt~G~~~~~~~---~--~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~pi 118 (307)
T 3r7w_A 46 LRFLG--NMTLNLWDCGGQDVFMEN---Y--FTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKI 118 (307)
T ss_dssp EEETT--TEEEEEEEECCSHHHHHH---H--HTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred EEeCC--ceEEEEEECCCcHHHhhh---h--hhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeE
Confidence 12112 367999999997643111 1 13446667889999999999987321122222 2333332 25799
Q ss_pred EEEEeCCCCCChHHHH---HHhhhhhhccccccCCCCCCeeccCC
Q psy13475 251 RIILNKADQVKPEELM---RVQGTLIWNISPLMSSSEPPVMYSTS 292 (468)
Q Consensus 251 iiVlNK~D~v~~~el~---~v~~~l~~~ls~~~~~pe~p~vy~~s 292 (468)
++|+||+|+...++.. .+.......++...|.+..+ +|..|
T Consensus 119 ilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~-~~~tS 162 (307)
T 3r7w_A 119 FVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI-GFPTS 162 (307)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE-EEECC
T ss_pred EEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE-EEEee
Confidence 9999999998743321 22222333344444443334 45555
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.43 E-value=1.9e-13 Score=123.66 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=70.4
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+++|.+|||||||+|+|++.++....+. . + .. ..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t------~--------------------------------~-~~---~~ 55 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEVVTTKPT------I--------------------------------G-FN---VE 55 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEEEEECSS------T--------------------------------T-CC---EE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCcCccCCc------C--------------------------------c-cc---eE
Confidence 34599999999999999999998766322111 1 1 00 11
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQT 250 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~i 250 (468)
.+... ...+.++||||..... .....++..+|++++|+|++....-+.....+..+.. .+.|+
T Consensus 56 ~~~~~---~~~~~i~Dt~G~~~~~----------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 122 (183)
T 1moz_A 56 TLSYK---NLKLNVWDLGGQTSIR----------PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAAL 122 (183)
T ss_dssp EEEET---TEEEEEEEEC----CC----------TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEE
T ss_pred EEEEC---CEEEEEEECCCCHhHH----------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeE
Confidence 11211 2579999999986422 1233447899999999999763211333344444432 45799
Q ss_pred EEEEeCCCCCCh
Q psy13475 251 RIILNKADQVKP 262 (468)
Q Consensus 251 iiVlNK~D~v~~ 262 (468)
++|+||+|+.+.
T Consensus 123 ilv~nK~Dl~~~ 134 (183)
T 1moz_A 123 LVFANKQDQPGA 134 (183)
T ss_dssp EEEEECTTSTTC
T ss_pred EEEEECCCCCCC
Confidence 999999998753
No 97
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.43 E-value=2.1e-13 Score=126.43 Aligned_cols=117 Identities=17% Similarity=0.230 Sum_probs=72.5
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|++..+... ..||+ +.++. ...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-----~~~t~--------------------------------~~~~~--~~~ 49 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTND-----YISTI--------------------------------GVDFK--IKT 49 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTT-----CCCSS--------------------------------CCCEE--EEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-----CCCcc--------------------------------cceeE--EEE
Confidence 3599999999999999999999876421 11211 01110 111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iii 252 (468)
+.. ......+.|+||||.... ......++..+|++++|+|++....-.....++..+. ....|+++
T Consensus 50 ~~~-~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 118 (206)
T 2bcg_Y 50 VEL-DGKTVKLQIWDTAGQERF----------RTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 118 (206)
T ss_dssp EEE-TTEEEEEEEECCTTTTTT----------TCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEE-CCEEEEEEEEeCCChHHH----------HHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 111 111246899999996542 1223445789999999999976211122223343333 34579999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+.+.
T Consensus 119 v~nK~Dl~~~ 128 (206)
T 2bcg_Y 119 VGNKCDLKDK 128 (206)
T ss_dssp EEECTTCTTT
T ss_pred EEECCCCccc
Confidence 9999999753
No 98
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.43 E-value=1.8e-13 Score=123.63 Aligned_cols=114 Identities=18% Similarity=0.279 Sum_probs=72.2
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|++..+... ..||+. ..+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-----~~~t~~------------------------------------~~~~~ 57 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEFVED-----YEPTKA------------------------------------DSYRK 57 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCS-----CCTTCC------------------------------------EEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCCCc-----CCCccc------------------------------------eEEEE
Confidence 3599999999999999999998875321 112211 11111
Q ss_pred -eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHH----HhcCCCcE
Q psy13475 176 -LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQ----LKGREYQT 250 (468)
Q Consensus 176 -~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~----l~~~~~~i 250 (468)
+.. ......+.|+||||... +......++..+|++++|+|++....-.....++.. ......|+
T Consensus 58 ~~~~-~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 126 (187)
T 2a9k_A 58 KVVL-DGEEVQIDILDTAGQED----------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF 126 (187)
T ss_dssp EEEE-TTEEEEEEEEECCCTTC----------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCE
T ss_pred EEEE-CCEEEEEEEEECCCCcc----------cHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 111 12124689999999653 334456668899999999999752111122222222 22346799
Q ss_pred EEEEeCCCCCC
Q psy13475 251 RIILNKADQVK 261 (468)
Q Consensus 251 iiVlNK~D~v~ 261 (468)
++|+||+|+.+
T Consensus 127 ilv~nK~Dl~~ 137 (187)
T 2a9k_A 127 LLVGNKSDLED 137 (187)
T ss_dssp EEEEECGGGGG
T ss_pred EEEEECccccc
Confidence 99999999864
No 99
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.43 E-value=3.3e-13 Score=123.42 Aligned_cols=117 Identities=15% Similarity=0.251 Sum_probs=72.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|+|++..+.... .||. +.++. ...+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~~~~~~-----~~t~--------------------------------~~~~~--~~~~ 62 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRT-----EATI--------------------------------GVDFR--ERAV 62 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSSC-----CCCC--------------------------------SCCEE--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-----CCCc--------------------------------ceEEE--EEEE
Confidence 5999999999999999999988764211 1111 00110 1111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH----hcCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL----KGREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l----~~~~~~iii 252 (468)
.. ......+.|+||||..... ......++..+|++++|+|++....-.....++..+ ...+.|+++
T Consensus 63 ~~-~~~~~~~~l~Dt~G~~~~~---------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piil 132 (189)
T 1z06_A 63 DI-DGERIKIQLWDTAGQERFR---------KSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRIL 132 (189)
T ss_dssp EE-TTEEEEEEEEECCCSHHHH---------TTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEE
T ss_pred EE-CCEEEEEEEEECCCchhhh---------hhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 11 1112468999999965421 033556688999999999997621111222233322 244679999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+.+.
T Consensus 133 v~nK~Dl~~~ 142 (189)
T 1z06_A 133 VGNKCDLRSA 142 (189)
T ss_dssp EEECTTCGGG
T ss_pred EEECcccccc
Confidence 9999998643
No 100
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=3e-13 Score=123.49 Aligned_cols=116 Identities=20% Similarity=0.310 Sum_probs=73.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|++..+... ..||. +.++ ....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~-----~~~t~--------------------------------~~~~--~~~~ 56 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPE-----LAATI--------------------------------GVDF--KVKT 56 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTT-----CCCCC--------------------------------SEEE--EEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCcc-----CCCcc--------------------------------ceEE--EEEE
Confidence 4599999999999999999999876421 11211 0010 0111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~ii 251 (468)
+.. ......+.|+||||... +......++..+|++++|+|++..........++..+.. ...|++
T Consensus 57 ~~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i 125 (195)
T 1x3s_A 57 ISV-DGNKAKLAIWDTAGQER----------FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM 125 (195)
T ss_dssp EEE-TTEEEEEEEEEECSSGG----------GCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEE
T ss_pred EEE-CCeEEEEEEEeCCCchh----------hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEE
Confidence 111 11224689999999643 223355668899999999999762111223344555543 357999
Q ss_pred EEEeCCCCCC
Q psy13475 252 IILNKADQVK 261 (468)
Q Consensus 252 iVlNK~D~v~ 261 (468)
+|+||+|+..
T Consensus 126 lv~nK~Dl~~ 135 (195)
T 1x3s_A 126 LVGNKIDKEN 135 (195)
T ss_dssp EEEECTTSSS
T ss_pred EEEECCcCcc
Confidence 9999999853
No 101
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.43 E-value=6.3e-13 Score=122.62 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=69.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|+|++.++... .||.. + ....+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~~~~~~------~~t~~-~-----------------------------------~~~~~ 68 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLGEIVTT------IPTIG-F-----------------------------------NVETV 68 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSSCCEEE------EEETT-E-----------------------------------EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcccc------CCcCc-e-----------------------------------eEEEE
Confidence 599999999999999999998765311 11111 0 00111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~iii 252 (468)
.. ....+.++||||... +......++..+|++++|+|++....-......+..+.. .+.|+++
T Consensus 69 ~~---~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piil 135 (192)
T 2b6h_A 69 EY---KNICFTVWDVGGQDK----------IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLV 135 (192)
T ss_dssp EE---TTEEEEEEECC---------------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEE
T ss_pred EE---CCEEEEEEECCCCHh----------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEE
Confidence 11 125799999999754 223355567899999999999763111222333433322 3579999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+.+.
T Consensus 136 v~NK~Dl~~~ 145 (192)
T 2b6h_A 136 FANKQDMPNA 145 (192)
T ss_dssp EEECTTSTTC
T ss_pred EEECCCCCCC
Confidence 9999999754
No 102
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.42 E-value=1.5e-12 Score=120.13 Aligned_cols=119 Identities=18% Similarity=0.280 Sum_probs=74.6
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+...|+++|.+|||||||+|+|.+..... ...|..+++ ..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~--------------------------------------~~ 58 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTN--------------------------------------KI 58 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCC--------------------------------------SC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeecccc--------------------------------------ce
Confidence 44569999999999999999999864332 111111111 11
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHH---HHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh-----c
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDAC---QWFIDRADIIFLVYDPSKLDVGPETEAILDQLK-----G 245 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~---~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~-----~ 245 (468)
....+.......+.|+||||.... .... ..++..+|++++|+|++. ...+....+...+. .
T Consensus 59 ~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~l~~~~~~~ 127 (196)
T 3llu_A 59 YKDDISNSSFVNFQIWDFPGQMDF----------FDPTFDYEMIFRGTGALIYVIDAQD-DYMEALTRLHITVSKAYKVN 127 (196)
T ss_dssp EEEEECCTTSCCEEEEECCSSCCT----------TCTTCCHHHHHHTCSEEEEEEETTS-CCHHHHHHHHHHHHHHHHHC
T ss_pred eeeeccCCCeeEEEEEECCCCHHH----------HhhhhhcccccccCCEEEEEEECCC-chHHHHHHHHHHHHHHHhcC
Confidence 111111223357999999996542 1222 456788999999999987 32233333333332 2
Q ss_pred CCCcEEEEEeCCCCCChH
Q psy13475 246 REYQTRIILNKADQVKPE 263 (468)
Q Consensus 246 ~~~~iiiVlNK~D~v~~~ 263 (468)
.+.|+++|+||+|+.+.+
T Consensus 128 ~~~piilv~nK~Dl~~~~ 145 (196)
T 3llu_A 128 PDMNFEVFIHKVDGLSDD 145 (196)
T ss_dssp TTCEEEEEEECGGGSCHH
T ss_pred CCCcEEEEEeccccCchh
Confidence 367999999999998754
No 103
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.42 E-value=3.2e-13 Score=122.54 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=73.0
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|++..+... ..||+. ..+ ....
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~--------------------------------~~~--~~~~ 51 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDD-----SNHTIG--------------------------------VEF--GSKI 51 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTT-----CCCCSE--------------------------------EEE--EEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-----CCCccc--------------------------------eEE--EEEE
Confidence 4599999999999999999998876421 112211 000 0111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHH---HHhcCCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILD---QLKGREYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~---~l~~~~~~iii 252 (468)
+.. ......+.|+||||... +......++..+|++++|+|++....-.....++. .....+.|+++
T Consensus 52 ~~~-~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 120 (186)
T 2bme_A 52 INV-GGKYVKLQIWDTAGQER----------FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 120 (186)
T ss_dssp EEE-TTEEEEEEEEEECCSGG----------GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEE-CCEEEEEEEEeCCCcHH----------HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 111 11124689999999654 33445566889999999999976211111223333 23345679999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+..
T Consensus 121 v~nK~Dl~~ 129 (186)
T 2bme_A 121 CGNKKDLDA 129 (186)
T ss_dssp EEECGGGGG
T ss_pred EEECccccc
Confidence 999999864
No 104
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.42 E-value=1.8e-12 Score=118.32 Aligned_cols=112 Identities=22% Similarity=0.236 Sum_probs=71.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+|+|++.++... .||+. .. ...
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~~~~~~------~~t~~--------------------------------~~----~~~ 60 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLGDVVTT------VPTVG--------------------------------VN----LET 60 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSCCEEE------CSSTT--------------------------------CC----EEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCc------CCCCc--------------------------------eE----EEE
Confidence 3599999999999999999988765321 12211 00 111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH-hc---CCCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL-KG---REYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l-~~---~~~~ii 251 (468)
+... ...+.++||||...... ....++..+|++++|+|++....-......+..+ .. .+.|++
T Consensus 61 ~~~~---~~~~~~~Dt~G~~~~~~----------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii 127 (189)
T 2x77_A 61 LQYK---NISFEVWDLGGQTGVRP----------YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLL 127 (189)
T ss_dssp EEET---TEEEEEEEECCSSSSCC----------CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEE
T ss_pred EEEC---CEEEEEEECCCCHhHHH----------HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEE
Confidence 1111 25799999999754321 1223467999999999998632112233333333 22 357999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|+||+|+.+.
T Consensus 128 lv~nK~Dl~~~ 138 (189)
T 2x77_A 128 IFANKQDLPDA 138 (189)
T ss_dssp EEEECTTSTTC
T ss_pred EEEECCCCcCC
Confidence 99999999764
No 105
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.42 E-value=3e-13 Score=124.51 Aligned_cols=116 Identities=20% Similarity=0.343 Sum_probs=69.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|+|++..+.... .||+ +.++ ....+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~~~~~~-----~~t~--------------------------------~~~~--~~~~~ 68 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDTFCEAC-----KSTV--------------------------------GVDF--KIKTV 68 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-------------CCT--------------------------------TEEE--EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCC-----CCcc--------------------------------ceeE--EEEEE
Confidence 4999999999999999999998764211 1111 0000 11111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHH---HHHHHhcCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEA---ILDQLKGREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~---ll~~l~~~~~~iiiV 253 (468)
.. ......+.|+||||... +......++..+|++++|+|++....-..... .+......+.|+++|
T Consensus 69 ~~-~~~~~~l~l~Dt~G~~~----------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV 137 (192)
T 2il1_A 69 EL-RGKKIRLQIWDTAGQER----------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLV 137 (192)
T ss_dssp EE-TTEEEEEEEEEECCSGG----------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred EE-CCeEEEEEEEeCCCcHH----------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 11 11124689999999643 33446667889999999999976211111222 233333446799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 138 ~NK~Dl~~~ 146 (192)
T 2il1_A 138 GNKLDCETD 146 (192)
T ss_dssp EECGGGGGG
T ss_pred EECcccccc
Confidence 999998643
No 106
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.42 E-value=2.4e-13 Score=125.72 Aligned_cols=115 Identities=20% Similarity=0.249 Sum_probs=69.6
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|++..+... . .||+ |.++.. ..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~~~~~---~--~~t~--------------------------------~~~~~~--~~ 69 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNEFREN---I--SATL--------------------------------GVDFQM--KT 69 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCCCC-----------------------------------------------CEE--EE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCcc---C--CCCc--------------------------------cceeEE--EE
Confidence 3599999999999999999998876321 1 1110 111100 01
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iii 252 (468)
..+ ......+.|+||||... +......++..+|++++|+|++....-.....++..+. ..+.|+++
T Consensus 70 ~~~-~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 138 (199)
T 2p5s_A 70 LIV-DGERTVLQLWDTAGQER----------FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIML 138 (199)
T ss_dssp EEE-TTEEEEEEEEECTTCTT----------CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEE
T ss_pred EEE-CCEEEEEEEEECCCCcc----------hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 111 11124589999999643 33446667889999999999976211112223333333 33679999
Q ss_pred EEeCCCCC
Q psy13475 253 ILNKADQV 260 (468)
Q Consensus 253 VlNK~D~v 260 (468)
|+||+|+.
T Consensus 139 v~NK~Dl~ 146 (199)
T 2p5s_A 139 VGNKADIR 146 (199)
T ss_dssp EEECGGGH
T ss_pred EEECcccc
Confidence 99999986
No 107
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.41 E-value=2e-13 Score=127.63 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=46.5
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEEEEEeCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTRIILNKADQ 259 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~iiiVlNK~D~ 259 (468)
..+.|+||||... +......++..+|++++|+|++....-.....++..+.. ...|+++|+||+|+
T Consensus 84 ~~l~l~Dt~G~~~----------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl 153 (217)
T 2f7s_A 84 VHLQLWDTAGQER----------FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADL 153 (217)
T ss_dssp EEEEEEEEESHHH----------HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTC
T ss_pred EEEEEEECCCcHh----------HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcc
Confidence 4689999999533 334566778999999999999762111112233443432 35799999999998
Q ss_pred CC
Q psy13475 260 VK 261 (468)
Q Consensus 260 v~ 261 (468)
.+
T Consensus 154 ~~ 155 (217)
T 2f7s_A 154 PD 155 (217)
T ss_dssp GG
T ss_pred cc
Confidence 64
No 108
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.41 E-value=1.3e-13 Score=129.36 Aligned_cols=113 Identities=17% Similarity=0.287 Sum_probs=60.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE-E
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR-G 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~-~ 175 (468)
.|+++|.+|+|||||+|+|++..+... ..||+. ..+. .
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~~~~~-----~~~t~~------------------------------------~~~~~~ 74 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGAFPES-----YTPTVF------------------------------------ERYMVN 74 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC------------CCCCC------------------------------------EEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCC-----CCCccc------------------------------------eeEEEE
Confidence 499999999999999999998776421 112221 1111 1
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH----HHHHHHhc--CCCc
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE----AILDQLKG--REYQ 249 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~----~ll~~l~~--~~~~ 249 (468)
+.. ......+.|+||||... +......++..+|++++|+|++.. ..+. .++..+.. .+.|
T Consensus 75 ~~~-~~~~~~l~l~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p 140 (214)
T 2j1l_A 75 LQV-KGKPVHLHIWDTAGQDD----------YDRLRPLFYPDASVLLLCFDVTSP---NSFDNIFNRWYPEVNHFCKKVP 140 (214)
T ss_dssp EEE-TTEEEEEEEEEC-------------------------CEEEEEEEEETTCH---HHHHHHHHTHHHHHHHHCSSCC
T ss_pred EEE-CCEEEEEEEEECCCchh----------hhHHHHHHhccCCEEEEEEECcCH---HHHHHHHHHHHHHHHHhCCCCC
Confidence 111 11124689999999653 223344567899999999998762 2222 23333332 2579
Q ss_pred EEEEEeCCCCCChHH
Q psy13475 250 TRIILNKADQVKPEE 264 (468)
Q Consensus 250 iiiVlNK~D~v~~~e 264 (468)
+++|+||+|+.....
T Consensus 141 iilv~nK~Dl~~~~~ 155 (214)
T 2j1l_A 141 IIVVGCKTDLRKDKS 155 (214)
T ss_dssp EEEEEECGGGGSCHH
T ss_pred EEEEEEChhhhccch
Confidence 999999999976543
No 109
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.41 E-value=1e-13 Score=125.36 Aligned_cols=115 Identities=8% Similarity=0.066 Sum_probs=70.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.. ...||+.. .+. ...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~~~~-----~~~~t~~~--------------------------------~~~---~~~ 46 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNAFPG-----EYIPTVFD--------------------------------NYS---ANV 46 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCS-----SCCCCSCC--------------------------------EEE---EEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-----CcCCcccc--------------------------------eeE---EEE
Confidence 59999999999999999999876531 11122211 000 001
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhcC--CCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKGR--EYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~~--~~~iiiV 253 (468)
.. ......+.|+||||..... .....++..+|++++|+|++....-.... .++..+... +.|+++|
T Consensus 47 ~~-~~~~~~~~i~Dt~G~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 115 (186)
T 1mh1_A 47 MV-DGKPVNLGLWDTAGQEDYD----------RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 115 (186)
T ss_dssp EE-TTEEEEEEEECCCCSGGGT----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEE
T ss_pred EE-CCEEEEEEEEECCCCHhHH----------HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 11 1222457899999985431 22334578999999999997621011111 234444432 6799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 116 ~nK~Dl~~~ 124 (186)
T 1mh1_A 116 GTKLDLRDD 124 (186)
T ss_dssp EECHHHHTC
T ss_pred eEccccccc
Confidence 999998754
No 110
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.41 E-value=1.7e-13 Score=128.19 Aligned_cols=118 Identities=17% Similarity=0.137 Sum_probs=70.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|+|++..+..... ||+ +.++ .. ...
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~~~~~~~-----~t~--------------------------------~~~~-~~-~~~ 53 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGRFEKNYN-----ATV--------------------------------GAVN-HP-VTF 53 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCSTTCEEE-----TTT--------------------------------TEEE-EE-EEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCC-----Ccc--------------------------------ceee-EE-EEE
Confidence 49999999999999999999876542111 111 0010 11 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHH---HHHHhcCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAI---LDQLKGREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~l---l~~l~~~~~~iiiV 253 (468)
.........+.|+||||..... .....++..+|++++|+|++..........+ +......+.|+++|
T Consensus 54 ~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 123 (218)
T 4djt_A 54 LDDQGNVIKFNVWDTAGQEKKA----------VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVC 123 (218)
T ss_dssp EBTTSCEEEEEEEEECSGGGTS----------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEE
T ss_pred EeCCCcEEEEEEEecCCchhhc----------hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 1111212458999999965421 2234457889999999999862111122222 33333446899999
Q ss_pred EeCCCCCChH
Q psy13475 254 LNKADQVKPE 263 (468)
Q Consensus 254 lNK~D~v~~~ 263 (468)
+||+|+.+..
T Consensus 124 ~nK~Dl~~~~ 133 (218)
T 4djt_A 124 ANKIDIKNRQ 133 (218)
T ss_dssp EECTTCC---
T ss_pred EECCCCcccc
Confidence 9999987643
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.41 E-value=4.8e-13 Score=121.71 Aligned_cols=118 Identities=20% Similarity=0.213 Sum_probs=74.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+++|.+|||||||+|+|++..... +.. | .++.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~-~~~----~-----------------------------------~~t~~~~~ 46 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYI-GNW----P-----------------------------------GVTVEKKE 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEE-EEC----T-----------------------------------TSCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccc-cCC----C-----------------------------------CeeccceE
Confidence 3469999999999999999999975431 111 1 12222111
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhh--cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFI--DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRI 252 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~--~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iii 252 (468)
+..... ...+.++||||......... .......++ ..+|++++|+|++. ......++..+...+.|+++
T Consensus 47 ~~~~~~--~~~~~l~Dt~G~~~~~~~~~----~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~piil 117 (188)
T 2wjg_A 47 GEFEYN--GEKFKVVDLPGVYSLTANSI----DEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLMEMGANLLL 117 (188)
T ss_dssp EEEEET--TEEEEEEECCCCSCCSSSSH----HHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEeC--CcEEEEEECCCcCccccccH----HHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHhcCCCEEE
Confidence 111111 25689999999865321100 001222333 35999999999875 23445566666667789999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+..
T Consensus 118 v~nK~Dl~~ 126 (188)
T 2wjg_A 118 ALNKMDLAK 126 (188)
T ss_dssp EEECHHHHH
T ss_pred EEEhhhccc
Confidence 999999753
No 112
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.41 E-value=4e-13 Score=124.87 Aligned_cols=116 Identities=20% Similarity=0.286 Sum_probs=71.7
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|++..+.. . ..||. +..+. ...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~---~--~~~t~--------------------------------~~~~~--~~~ 70 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSE---R--QGSTI--------------------------------GVDFT--MKT 70 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-----------------------------------------------CEE--EEE
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCC---C--CCCCc--------------------------------ceEEE--EEE
Confidence 359999999999999999999877642 1 11111 00110 011
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iii 252 (468)
+.. ......+.|+||||... +......++..+|++++|+|++....-.....++..+. ..+.|+++
T Consensus 71 ~~~-~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piil 139 (201)
T 2hup_A 71 LEI-QGKRVKLQIWDTAGQER----------FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 139 (201)
T ss_dssp EEE-TTEEEEEEEECCTTCGG----------GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEE-CCEEEEEEEEECCCcHh----------HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 111 11124689999999643 33456667899999999999875211112233444443 24579999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+.+
T Consensus 140 v~NK~Dl~~ 148 (201)
T 2hup_A 140 IGNKSDLSE 148 (201)
T ss_dssp EEECTTCGG
T ss_pred EEECCcccc
Confidence 999999864
No 113
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.40 E-value=2.6e-13 Score=125.39 Aligned_cols=115 Identities=17% Similarity=0.251 Sum_probs=69.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|+|++..+... ..||+. ..+ ....+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~~~~-----~~~t~~--------------------------------~~~--~~~~~ 50 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKKFSNQ-----YKATIG--------------------------------ADF--LTKEV 50 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSS-----CCCCCS--------------------------------EEE--EEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCC-----CCCccc--------------------------------ceE--EEEEE
Confidence 499999999999999999999876421 112110 000 01111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---c----CCCc
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---G----REYQ 249 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~----~~~~ 249 (468)
.. ......+.|+||||..... .....++..+|++++|+|++....-.....++..+. . .+.|
T Consensus 51 ~~-~~~~~~~~l~Dt~G~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p 119 (207)
T 1vg8_A 51 MV-DDRLVTMQIWDTAGQERFQ----------SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119 (207)
T ss_dssp ES-SSCEEEEEEEEECSSGGGS----------CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC
T ss_pred EE-CCEEEEEEEEeCCCcHHHH----------HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc
Confidence 11 1222468999999965421 122345789999999999976211111222232221 1 3579
Q ss_pred EEEEEeCCCCCC
Q psy13475 250 TRIILNKADQVK 261 (468)
Q Consensus 250 iiiVlNK~D~v~ 261 (468)
+++|+||+|+..
T Consensus 120 iilv~nK~Dl~~ 131 (207)
T 1vg8_A 120 FVVLGNKIDLEN 131 (207)
T ss_dssp EEEEEECTTSSC
T ss_pred EEEEEECCCCcc
Confidence 999999999874
No 114
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=5.8e-13 Score=124.33 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=72.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|++..+.. +..||.. ..+. ...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~-----~~~~t~~--------------------------------~~~~--~~~ 67 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPP-----GQGATIG--------------------------------VDFM--IKT 67 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCT-----TCCCCCS--------------------------------EEEE--EEE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCC-----CCCCccc--------------------------------eeEE--EEE
Confidence 459999999999999999999876642 1122211 0000 011
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH---hcCCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL---KGREYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l---~~~~~~iii 252 (468)
+.+ ......+.|+||||... +......++..+|++++|+|++....-......+..+ .....|+++
T Consensus 68 ~~~-~~~~~~l~l~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piil 136 (201)
T 2ew1_A 68 VEI-NGEKVKLQIWDTAGQER----------FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136 (201)
T ss_dssp EEE-TTEEEEEEEEEECCSGG----------GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEE-CCEEEEEEEEECCCcHH----------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 111 11124689999999643 3344556688999999999987621111122333333 334679999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+.+
T Consensus 137 v~NK~Dl~~ 145 (201)
T 2ew1_A 137 VGNKIDLAE 145 (201)
T ss_dssp EEECGGGGG
T ss_pred EEECCCCcc
Confidence 999999864
No 115
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.40 E-value=9.9e-13 Score=132.60 Aligned_cols=148 Identities=15% Similarity=0.127 Sum_probs=82.8
Q ss_pred HHHHHHhhhcchhhhhhccccccCCCCCC------ccccCCC-EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCC
Q psy13475 61 ELKRLYDNAIKPLEITYKYRDLSNRHFAD------PEIFSKP-LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSP 133 (468)
Q Consensus 61 ~l~~ly~~~~~ple~~~~~~~~~s~~l~d------~~~~~~p-~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT 133 (468)
....+|...+.++.+...+....++.... +.+.+++ .|+|+|.+|+|||||+|+|++.++... .||.
T Consensus 124 ~~A~lYr~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~------~pT~ 197 (329)
T 3o47_A 124 RAAALFRDKVVALAEGREWSLESSPAQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT------IPTI 197 (329)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSCC-----CCCCC------CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE------EEET
T ss_pred hHHHHHhhhccccccCCccccccccccccCCCCcccccccCcceEEEECCCCccHHHHHHHHhCCCCCCc------cccc
Confidence 34455666555555544444333332211 1111233 499999999999999999998775311 1111
Q ss_pred ceeEEEecCCCCccccCcccccCccccccccccccceeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHH
Q psy13475 134 AYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQW 213 (468)
Q Consensus 134 ~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~ 213 (468)
. ..+..+.. ....+.|+||||... +......
T Consensus 198 ~------------------------------------~~~~~~~~---~~~~l~i~Dt~G~~~----------~~~~~~~ 228 (329)
T 3o47_A 198 G------------------------------------FNVETVEY---KNISFTVWDVGGQDK----------IRPLWRH 228 (329)
T ss_dssp T------------------------------------EEEEEEEE---TTEEEEEEECC---------------CCSHHH
T ss_pred c------------------------------------eEEEEEec---CcEEEEEEECCCCHh----------HHHHHHH
Confidence 1 00111111 125699999999432 3344666
Q ss_pred hhcccCEEEEEEcCCCCCCCHhHHHHH-HHHhc---CCCcEEEEEeCCCCCChH
Q psy13475 214 FIDRADIIFLVYDPSKLDVGPETEAIL-DQLKG---REYQTRIILNKADQVKPE 263 (468)
Q Consensus 214 ~~~~aDlIllV~Da~~~~i~~e~~~ll-~~l~~---~~~~iiiVlNK~D~v~~~ 263 (468)
++..+|++|+|+|++....-......+ ..+.. .+.|+++|+||+|+.+..
T Consensus 229 ~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp HHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc
Confidence 788999999999997632222222233 33332 267999999999997543
No 116
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.40 E-value=1.2e-13 Score=125.31 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=51.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee-EE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL-RG 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i-~~ 175 (468)
.|+++|.+|+|||||+|+|++..+.... .|| ...+.. ..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~~~~~~-----~~t-----------------------------------~~~~~~~~~ 49 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTF-----IST-----------------------------------IGIDFKIRT 49 (183)
T ss_dssp EEEEECCCCC----------------CH-----HHH-----------------------------------HCEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC-----CCc-----------------------------------ccceeEEEE
Confidence 5999999999999999999987553100 011 111111 11
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc---CCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG---REYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~---~~~~iii 252 (468)
+.+ ......+.|+||||.... ......++..+|++++|+|++....-.....++..+.. .+.|+++
T Consensus 50 ~~~-~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piil 118 (183)
T 2fu5_C 50 IEL-DGKRIKLQIWDTAGQERF----------RTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMI 118 (183)
T ss_dssp EEE-TTEEEEEEEEEC-------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEE-CCEEEEEEEEcCCCChhh----------hhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 111 112246899999996542 12233457899999999999762111122234444432 3579999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+.+
T Consensus 119 v~nK~Dl~~ 127 (183)
T 2fu5_C 119 LGNKCDVND 127 (183)
T ss_dssp EEEC--CCS
T ss_pred EEECccCCc
Confidence 999999875
No 117
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.40 E-value=1.6e-13 Score=126.60 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=50.2
Q ss_pred EEEEeccCCCChhhHHHHHhCC--cccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN--EYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~--~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
.|+|+|.+|+|||||+|+|++. .+. +. ..||+. ..+ ...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~~~~~~--~~---~~~t~~--------------------------------~~~--~~~ 62 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSKGSKFL--KD---YAMTSG--------------------------------VEV--VVA 62 (208)
T ss_dssp EEEEC-------------------------------------------------------------------------CE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccc--CC---CCCccc--------------------------------eEE--EEE
Confidence 5999999999999999999988 432 11 112211 000 011
Q ss_pred EeecCCCC-CcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc------CC
Q psy13475 175 GLQLPHPL-LEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG------RE 247 (468)
Q Consensus 175 ~~~~~~~~-l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~------~~ 247 (468)
.+...... ...+.|+||||.... ......++..+|++++|+|++....-.....++..+.. .+
T Consensus 63 ~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ 132 (208)
T 2yc2_C 63 PVTIPDTTVSVELFLLDTAGSDLY----------KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP 132 (208)
T ss_dssp EEECTTSSEEEEEEEEETTTTHHH----------HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSC
T ss_pred EEEECCcccEEEEEEEECCCcHHH----------HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccC
Confidence 11211100 246899999998542 23344557899999999999762111223344444432 46
Q ss_pred CcEEEEEeCCCCCC
Q psy13475 248 YQTRIILNKADQVK 261 (468)
Q Consensus 248 ~~iiiVlNK~D~v~ 261 (468)
.|+++|+||+|+.+
T Consensus 133 ~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 133 LRAVLVANKTDLPP 146 (208)
T ss_dssp CEEEEEEECC----
T ss_pred CcEEEEEECcccch
Confidence 79999999999976
No 118
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.40 E-value=2.1e-13 Score=125.83 Aligned_cols=115 Identities=12% Similarity=0.157 Sum_probs=68.1
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+|+|++..+.. ...||+. +.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~~~~-----~~~~t~~------------------------------------~~~~~ 59 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNGYPT-----EYIPTAF------------------------------------DNFSA 59 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-------------CCSS------------------------------------EEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-----CCCCccc------------------------------------ceeEE
Confidence 359999999999999999999886531 1122221 11111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhc--CCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKG--REYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~--~~~~iii 252 (468)
..........+.|+||||..... .....++..+|++++|+|++....-.... .++..+.. .+.|+++
T Consensus 60 ~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~il 129 (201)
T 2q3h_A 60 VVSVDGRPVRLQLCDTAGQDEFD----------KLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIIL 129 (201)
T ss_dssp EEEETTEEEEEEEEECCCSTTCS----------SSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEE
T ss_pred EEEECCEEEEEEEEECCCCHHHH----------HHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 11111212357799999985421 12334578999999999997621111111 23333432 2679999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+..
T Consensus 130 v~nK~Dl~~ 138 (201)
T 2q3h_A 130 VGTQSDLRE 138 (201)
T ss_dssp EEECGGGGG
T ss_pred EEECHhhhh
Confidence 999999874
No 119
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.40 E-value=3e-13 Score=124.26 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=70.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.. ...||+. ..+...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~~~~-----~~~~t~~------------------------------------~~~~~~ 63 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGEIPT-----AYVPTVF------------------------------------ENFSHV 63 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCS-----SCCCCSE------------------------------------EEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC-----ccCCeee------------------------------------eeeEEE
Confidence 49999999999999999999987531 1122221 111111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH-HHHHHHHhc--CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET-EAILDQLKG--REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~-~~ll~~l~~--~~~~iiiV 253 (468)
.........+.|+||||.... ......++..+|++++|+|++....-... ..++..+.. .+.|+++|
T Consensus 64 ~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv 133 (194)
T 3reg_A 64 MKYKNEEFILHLWDTAGQEEY----------DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLV 133 (194)
T ss_dssp EEETTEEEEEEEEEECCSGGG----------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEE
T ss_pred EEECCEEEEEEEEECCCcHHH----------HHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 111222245799999996432 22344457899999999999762100111 223333332 25799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+.+
T Consensus 134 ~nK~Dl~~ 141 (194)
T 3reg_A 134 GLKVDLRK 141 (194)
T ss_dssp EECGGGCC
T ss_pred EEChhhcc
Confidence 99999874
No 120
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=1.9e-13 Score=127.32 Aligned_cols=117 Identities=13% Similarity=0.198 Sum_probs=71.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.... .||+. ..+ ...+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~~~~~-----~~t~~--------------------------------~~~---~~~~ 66 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDEFPEVY-----VPTVF--------------------------------ENY---VADI 66 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCC------------C--------------------------------CEE---EEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCcC-----CCccc--------------------------------ceE---EEEE
Confidence 5999999999999999999998764211 12211 011 0111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH-HHHHHHHhcC--CCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET-EAILDQLKGR--EYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~-~~ll~~l~~~--~~~iiiV 253 (468)
.. ......+.|+||||..... .....++..+|++++|+|++....-... ..++..+... +.|+++|
T Consensus 67 ~~-~~~~~~~~i~Dt~G~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 135 (207)
T 2fv8_A 67 EV-DGKQVELALWDTAGQEDYD----------RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILV 135 (207)
T ss_dssp EE-TTEEEEEEEEECTTCTTCT----------TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEE
T ss_pred EE-CCEEEEEEEEECCCcHHHH----------HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 11 1112468999999975421 2233457899999999998752100111 2334444332 6799999
Q ss_pred EeCCCCCChHH
Q psy13475 254 LNKADQVKPEE 264 (468)
Q Consensus 254 lNK~D~v~~~e 264 (468)
+||+|+.....
T Consensus 136 ~nK~Dl~~~~~ 146 (207)
T 2fv8_A 136 ANKKDLRSDEH 146 (207)
T ss_dssp EECGGGGGCHH
T ss_pred EEchhhhcccc
Confidence 99999975543
No 121
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.39 E-value=1.2e-12 Score=138.63 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=81.8
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee-e
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR-L 173 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~-i 173 (468)
...|+++|.+++|||||+|+|+|.+....... +. ..... +.|.+. .
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~---------~~-------~e~~~-----------------GiTi~~~~ 65 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDK---------LP-------ESQKR-----------------GITIDIGF 65 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC-----------------------------------------------------CC
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCccccccc---------cc-------ccccC-----------------ccEEecce
Confidence 34699999999999999999998762110000 00 00000 111110 0
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
..... . ...++||||||+.+ |.......+..+|++++|+|++. +...+..+.+..+...+.|+++|
T Consensus 66 ~~~~~-~--~~~i~iiDtPGh~~----------~~~~~~~~~~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~~ip~Ivv 131 (482)
T 1wb1_A 66 SAFKL-E--NYRITLVDAPGHAD----------LIRAVVSAADIIDLALIVVDAKE-GPKTQTGEHMLILDHFNIPIIVV 131 (482)
T ss_dssp CEEEE-T--TEEEEECCCSSHHH----------HHHHHHHHTTSCCEEEEEEETTT-CSCHHHHHHHHHHHHTTCCBCEE
T ss_pred EEEEE-C--CEEEEEEECCChHH----------HHHHHHHHHhhCCEEEEEEecCC-CccHHHHHHHHHHHHcCCCEEEE
Confidence 11111 1 25799999999744 44445566889999999999987 56777777777777777899999
Q ss_pred EeCCCCCChHHHHHH
Q psy13475 254 LNKADQVKPEELMRV 268 (468)
Q Consensus 254 lNK~D~v~~~el~~v 268 (468)
+||+|+.+.+.+..+
T Consensus 132 iNK~Dl~~~~~~~~~ 146 (482)
T 1wb1_A 132 ITKSDNAGTEEIKRT 146 (482)
T ss_dssp EECTTSSCHHHHHHH
T ss_pred EECCCcccchhHHHH
Confidence 999999976544433
No 122
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=7.3e-13 Score=121.99 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=71.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.... .||+.. .+ ....
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~~~~~~-----~~t~~~--------------------------------~~---~~~~ 69 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKRFIWEY-----DPTLES--------------------------------TY---RHQA 69 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCC-----CTTCCE--------------------------------EE---EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCccc-----CCCCCc--------------------------------eE---EEEE
Confidence 5999999999999999999998764211 122110 00 0011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH----hcCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL----KGREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l----~~~~~~iii 252 (468)
.. ......+.|+||||... . .....++..+|++++|+|++....-+....++..+ ...+.|+++
T Consensus 70 ~~-~~~~~~~~l~Dt~G~~~-~----------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piil 137 (196)
T 2atv_A 70 TI-DDEVVSMEILDTAGQED-T----------IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLIL 137 (196)
T ss_dssp EE-TTEEEEEEEEECCCCCC-C----------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEE
T ss_pred EE-CCEEEEEEEEECCCCCc-c----------cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEE
Confidence 11 12224689999999865 1 22445578899999999997621111222223222 234679999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+.+
T Consensus 138 v~NK~Dl~~ 146 (196)
T 2atv_A 138 VGNKADLDH 146 (196)
T ss_dssp EEECGGGGG
T ss_pred EEECccccc
Confidence 999999864
No 123
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.39 E-value=1e-12 Score=121.04 Aligned_cols=112 Identities=19% Similarity=0.246 Sum_probs=71.7
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+++|.+|||||||+|+|.+..+..+. ||. + .+ ..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~------~t~--------------------------------~-~~---~~ 60 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQ------PTW--------------------------------H-PT---SE 60 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCC------CCC--------------------------------S-CE---EE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccc------cCC--------------------------------C-CC---eE
Confidence 346999999999999999999988764211 111 0 11 11
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCcE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQT 250 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~i 250 (468)
.+... . ..+.++||||...... ....++..+|++++|+|++....-.+....+..+. ..+.|+
T Consensus 61 ~~~~~-~--~~~~i~Dt~G~~~~~~----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi 127 (190)
T 1m2o_B 61 ELAIG-N--IKFTTFDLGGHIQARR----------LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF 127 (190)
T ss_dssp EEEET-T--EEEEEEECCCSGGGTT----------SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCE
T ss_pred EEEEC-C--EEEEEEECCCCHHHHH----------HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCE
Confidence 11211 1 5789999999865321 22334679999999999986321122233333332 246799
Q ss_pred EEEEeCCCCCC
Q psy13475 251 RIILNKADQVK 261 (468)
Q Consensus 251 iiVlNK~D~v~ 261 (468)
++|+||+|+..
T Consensus 128 ilv~NK~Dl~~ 138 (190)
T 1m2o_B 128 VILGNKIDAPN 138 (190)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEECCCCcC
Confidence 99999999875
No 124
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.39 E-value=4.3e-13 Score=126.10 Aligned_cols=113 Identities=13% Similarity=0.200 Sum_probs=71.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE-E
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR-G 175 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~-~ 175 (468)
.|+|+|.+|||||||+|+|++..+... ..||+. ..+. .
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~~~~~-----~~~t~~------------------------------------~~~~~~ 67 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDCYPET-----YVPTVF------------------------------------ENYTAC 67 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSS-----CCCCSE------------------------------------EEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCC-----cCCeee------------------------------------eeEEEE
Confidence 599999999999999999999876421 112221 1111 1
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHh-HHHHHHHHhc--CCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPE-TEAILDQLKG--REYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e-~~~ll~~l~~--~~~~iii 252 (468)
+.. ......+.|+||||.... ......++..+|++++|+|++....-.. ...++..+.. .+.|+++
T Consensus 68 ~~~-~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 136 (214)
T 3q3j_B 68 LET-EEQRVELSLWDTSGSPYY----------DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLL 136 (214)
T ss_dssp EEC---CEEEEEEEEECCSGGG----------TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEE
T ss_pred EEE-CCEEEEEEEEECCCCHhH----------HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 111 122246899999997542 2223445789999999999986211111 1234444433 2579999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+.+
T Consensus 137 v~nK~Dl~~ 145 (214)
T 3q3j_B 137 IGCKTDLRT 145 (214)
T ss_dssp EEECGGGGG
T ss_pred EEEChhhcc
Confidence 999999864
No 125
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=3.9e-13 Score=123.32 Aligned_cols=116 Identities=9% Similarity=0.087 Sum_probs=72.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.. ...||+. ..+ ...+
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~~~~-----~~~~t~~--------------------------------~~~---~~~~ 59 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDAFPE-----EYVPTVF--------------------------------DHY---AVSV 59 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCCC-----SCCCSSC--------------------------------CCE---EEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-----CCCCccc--------------------------------cee---EEEE
Confidence 59999999999999999999876531 1122221 010 0011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhcC--CCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKGR--EYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~~--~~~iiiV 253 (468)
.. ......+.|+||||..... .....++..+|++++|+|++....-.... .++..+... +.|+++|
T Consensus 60 ~~-~~~~~~~~i~D~~G~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 128 (194)
T 2atx_A 60 TV-GGKQYLLGLYDTAGQEDYD----------RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 128 (194)
T ss_dssp ES-SSCEEEEEEECCCCSSSST----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEE
T ss_pred EE-CCEEEEEEEEECCCCcchh----------HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 11 1122468999999975421 22344578999999999987621011111 334444432 6799999
Q ss_pred EeCCCCCChH
Q psy13475 254 LNKADQVKPE 263 (468)
Q Consensus 254 lNK~D~v~~~ 263 (468)
+||+|+.+..
T Consensus 129 ~nK~Dl~~~~ 138 (194)
T 2atx_A 129 GTQIDLRDDP 138 (194)
T ss_dssp EECTTSTTCH
T ss_pred EEChhhcccc
Confidence 9999997643
No 126
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.38 E-value=5.2e-13 Score=122.54 Aligned_cols=113 Identities=14% Similarity=0.217 Sum_probs=68.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|||||||+|+|++..+.. ...||+.. .+. ...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~~~-----~~~~t~~~--------------------------------~~~---~~~ 62 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRFIS-----EYDPNLED--------------------------------TYS---SEE 62 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCS-----CCCTTCCE--------------------------------EEE---EEE
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCc-----ccCCCccc--------------------------------eee---EEE
Confidence 49999999999999999999887531 11222211 110 001
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc------CCCcE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG------REYQT 250 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~------~~~~i 250 (468)
.. ......+.|+||||..... .. ..++..+|++++|+|.+....-.....++..+.. .+.|+
T Consensus 63 ~~-~~~~~~l~i~Dt~G~~~~~----------~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi 130 (187)
T 3c5c_A 63 TV-DHQPVHLRVMDTADLDTPR----------NC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPA 130 (187)
T ss_dssp EE-TTEEEEEEEEECCC---CC----------CT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_pred EE-CCEEEEEEEEECCCCCcch----------hH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCE
Confidence 11 1222468899999964321 11 3467889999999999752111112233333322 46799
Q ss_pred EEEEeCCCCCC
Q psy13475 251 RIILNKADQVK 261 (468)
Q Consensus 251 iiVlNK~D~v~ 261 (468)
++|+||+|+.+
T Consensus 131 ilv~nK~Dl~~ 141 (187)
T 3c5c_A 131 LLLGNKLDMAQ 141 (187)
T ss_dssp EEEEECGGGGG
T ss_pred EEEEECcchhh
Confidence 99999999854
No 127
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.38 E-value=1.5e-13 Score=124.00 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=66.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|+|||||+|+|++..+.. ...||+. ..+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~~~-----~~~~t~~------------------------------------~~~~~ 47 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTFPT-----DYVPTVF------------------------------------DNFSA 47 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCC---------------------------------------------------CBC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-----CCCCeee------------------------------------eeEEE
Confidence 469999999999999999999876531 1112211 00000
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhc--CCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKG--REYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~--~~~~iii 252 (468)
..........+.|+||||.... ......++..+|++++|+|++....-.... .++..+.. .+.|+++
T Consensus 48 ~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 117 (182)
T 3bwd_D 48 NVVVNGATVNLGLWDTAGQEDY----------NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVL 117 (182)
T ss_dssp CCC-------CEEECCCC-CTT----------TTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEE
T ss_pred EEEECCEEEEEEEEECCCChhh----------hhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 0000111245789999996542 223344578999999999997621111111 23444433 2579999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+.+.
T Consensus 118 v~nK~Dl~~~ 127 (182)
T 3bwd_D 118 VGTKLDLRDD 127 (182)
T ss_dssp EEECHHHHTC
T ss_pred EEechhhhcC
Confidence 9999998654
No 128
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.38 E-value=5.5e-12 Score=130.50 Aligned_cols=98 Identities=17% Similarity=0.100 Sum_probs=63.4
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC-CcEEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE-YQTRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~-~~iiiVlNK~D~v~~ 262 (468)
..++||||||..+ |.......+..+|++++|+|++......+..+.+..+...+ .|+++|+||+|+.+.
T Consensus 75 ~~~~iiDtPGh~~----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 75 RRISFIDAPGHEV----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSK 144 (403)
T ss_dssp EEEEEEECCCCGG----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCH
T ss_pred ceEEEEECCCcHH----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccch
Confidence 4699999999644 44556666889999999999987322556666665555433 489999999999987
Q ss_pred HHHHHHhhhhhhccccccCCCCCCeeccCC
Q psy13475 263 EELMRVQGTLIWNISPLMSSSEPPVMYSTS 292 (468)
Q Consensus 263 ~el~~v~~~l~~~ls~~~~~pe~p~vy~~s 292 (468)
++....+......+.. .+....|.+.+++
T Consensus 145 ~~~~~~~~~i~~~l~~-~~~~~~~ii~vSA 173 (403)
T 3sjy_A 145 EEALSQYRQIKQFTKG-TWAENVPIIPVSA 173 (403)
T ss_dssp HHHHHHHHHHHHHHTT-STTTTCCEEECBT
T ss_pred HHHHHHHHHHHHHHHh-hCCCCCEEEEEEC
Confidence 6554443322211111 2223445555554
No 129
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.38 E-value=8.3e-13 Score=122.54 Aligned_cols=112 Identities=19% Similarity=0.265 Sum_probs=67.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+++|.+|||||||+|+|.+..+.... ||. +.+ . .
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~------~t~--------------------------------~~~-~---~ 62 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHV------PTL--------------------------------HPT-S---E 62 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------------CCC--------------------------------CCS-C---E
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccC------CCC--------------------------------Cce-e---E
Confidence 346999999999999999999987764211 111 111 0 1
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCcE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQT 250 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~i 250 (468)
.+... . ..+.++||||..... .....++..+|++++|+|++....-.+....+..+. ..+.|+
T Consensus 63 ~~~~~-~--~~l~i~Dt~G~~~~~----------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi 129 (198)
T 1f6b_A 63 ELTIA-G--MTFTTFDLGGHIQAR----------RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPI 129 (198)
T ss_dssp EEEET-T--EEEEEEEECC----C----------CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCE
T ss_pred EEEEC-C--EEEEEEECCCcHhhH----------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcE
Confidence 11211 1 578999999965421 223345789999999999976311122233333332 246799
Q ss_pred EEEEeCCCCCC
Q psy13475 251 RIILNKADQVK 261 (468)
Q Consensus 251 iiVlNK~D~v~ 261 (468)
++|+||+|+..
T Consensus 130 ilv~NK~Dl~~ 140 (198)
T 1f6b_A 130 LILGNKIDRPE 140 (198)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEECCCccc
Confidence 99999999864
No 130
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.38 E-value=5.9e-14 Score=129.86 Aligned_cols=116 Identities=20% Similarity=0.283 Sum_probs=68.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|+|++..+...... +.+.......+
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~---------------------------------------~~~~~~~~~~~ 75 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDTYTESYIS---------------------------------------TIGVDFKIRTI 75 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCCCCCHHHH---------------------------------------HHCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCC---------------------------------------cccceEEEEEE
Confidence 599999999999999999998766421111 00100111111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC---CCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR---EYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~---~~~iiiV 253 (468)
.. ......+.|+||||..... .....++..+|++++|+|++....-.....++..+... +.|+++|
T Consensus 76 ~~-~~~~~~~~i~Dt~G~~~~~----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv 144 (199)
T 3l0i_B 76 EL-DGKTIKLQIWDTAGQERFR----------TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 144 (199)
T ss_dssp EE-TTEEEEEEEECCTTCTTCC----------CCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC
T ss_pred EE-CCEEEEEEEEECCCcHhHH----------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 11 1112468999999964321 22334578999999999998631112233444555443 5799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 145 ~nK~Dl~~~ 153 (199)
T 3l0i_B 145 GNKCDLTTK 153 (199)
T ss_dssp -CCSSCC--
T ss_pred EECccCCcc
Confidence 999998754
No 131
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.37 E-value=4.2e-13 Score=124.41 Aligned_cols=116 Identities=12% Similarity=0.180 Sum_probs=72.1
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+... ..||+ +..+. ..+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~~~~-----~~~t~--------------------------------~~~~~---~~~ 66 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQFPEV-----YVPTV--------------------------------FENYI---ADI 66 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSS-----CCCSS--------------------------------CCCCE---EEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-----cCCcc--------------------------------cceEE---EEE
Confidence 499999999999999999999876421 11221 01111 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH-HHHHHHHhcC--CCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET-EAILDQLKGR--EYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~-~~ll~~l~~~--~~~iiiV 253 (468)
.. ......+.|+||||.... ......++..+|++++|+|++....-... ..++..+... +.|+++|
T Consensus 67 ~~-~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 135 (201)
T 2gco_A 67 EV-DGKQVELALWDTAGQEDY----------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 135 (201)
T ss_dssp EE-TTEEEEEEEECCCCSGGG----------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEE
T ss_pred EE-CCEEEEEEEEECCCchhH----------HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 11 111246899999996542 12233457899999999998752101111 2233444332 6799999
Q ss_pred EeCCCCCChH
Q psy13475 254 LNKADQVKPE 263 (468)
Q Consensus 254 lNK~D~v~~~ 263 (468)
+||+|+....
T Consensus 136 ~nK~Dl~~~~ 145 (201)
T 2gco_A 136 GNKKDLRQDE 145 (201)
T ss_dssp EECGGGTTCH
T ss_pred EecHHhhcCc
Confidence 9999998654
No 132
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.37 E-value=2.8e-13 Score=127.80 Aligned_cols=115 Identities=22% Similarity=0.260 Sum_probs=68.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|+|||||+|+|++..+..... ||+ +..+. ...+
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~~~~~~~-----~t~--------------------------------~~~~~--~~~~ 55 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSK-----STI--------------------------------GVEFA--TRTL 55 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCCCCC-------------------------------------------CCSEE--EEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC-----Ccc--------------------------------cceeE--EEEE
Confidence 59999999999999999999987653221 111 11110 1111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.. ......+.|+||||.... ......++..+|++|+|+|++....-.....++..+. ....|+++|
T Consensus 56 ~~-~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv 124 (223)
T 3cpj_B 56 EI-EGKRIKAQIWDTAGQERY----------RAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLI 124 (223)
T ss_dssp EE-TTEEEEEEEECCTTTTTT----------TCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEE
T ss_pred EE-CCEEEEEEEEECCCccch----------hhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 11 111246899999996542 1223445789999999999976211122223344443 235799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+..
T Consensus 125 ~nK~Dl~~ 132 (223)
T 3cpj_B 125 GNKSDLAH 132 (223)
T ss_dssp ECCGGGGG
T ss_pred EECccccc
Confidence 99999864
No 133
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.37 E-value=9.4e-13 Score=120.04 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=46.8
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCH----hHHHHHHHHhc-----CCCcEEEEE
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGP----ETEAILDQLKG-----REYQTRIIL 254 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~----e~~~ll~~l~~-----~~~~iiiVl 254 (468)
..+.|+||||... +......++..+|++++|+|++. +... .+..+...+.. .+.|+++|+
T Consensus 74 ~~~~i~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~D~~~-~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~ 142 (198)
T 3t1o_A 74 TRFHLYTVPGQVF----------YNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMRENLAEYGLTLDDVPIVIQV 142 (198)
T ss_dssp EEEEEEECCSCCS----------CSHHHHHHTTTCCEEEEEEECCG-GGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEE
T ss_pred eEEEEEeCCChHH----------HHHHHHHHHhcCCEEEEEEECCc-chhhHhHHHHHHHHHHHHhhccccCCCCEEEEE
Confidence 4689999999653 33445667899999999999974 2122 22233333332 357999999
Q ss_pred eCCCCCCh
Q psy13475 255 NKADQVKP 262 (468)
Q Consensus 255 NK~D~v~~ 262 (468)
||+|+.+.
T Consensus 143 NK~Dl~~~ 150 (198)
T 3t1o_A 143 NKRDLPDA 150 (198)
T ss_dssp ECTTSTTC
T ss_pred Echhcccc
Confidence 99998643
No 134
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.37 E-value=3.1e-13 Score=125.91 Aligned_cols=117 Identities=9% Similarity=0.122 Sum_probs=72.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.. . ..||+ .+.....
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~~~~--~---~~~t~------------------------------------~~~~~~~ 70 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNAFPG--E---YIPTV------------------------------------FDNYSAN 70 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCC------CCCCS------------------------------------EEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC--C---cCCee------------------------------------cceeEEE
Confidence 59999999999999999999876531 1 11222 1111111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhcC--CCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKGR--EYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~~--~~~iiiV 253 (468)
.........+.|+||||.... ......++..+|++++|+|++....-.+.. .++..+... +.|+++|
T Consensus 71 ~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 140 (204)
T 4gzl_A 71 VMVDGKPVNLGLWDTAGLEDY----------DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 140 (204)
T ss_dssp EECC-CEEEEEEEEECCSGGG----------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEE
T ss_pred EEECCEEEEEEEEECCCchhh----------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 111222245779999998542 222344578999999999998621111111 234444432 6799999
Q ss_pred EeCCCCCChHH
Q psy13475 254 LNKADQVKPEE 264 (468)
Q Consensus 254 lNK~D~v~~~e 264 (468)
+||+|+.+..+
T Consensus 141 ~nK~Dl~~~~~ 151 (204)
T 4gzl_A 141 GTKLDLRDDKD 151 (204)
T ss_dssp EECHHHHTCHH
T ss_pred Eechhhccchh
Confidence 99999876443
No 135
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.37 E-value=2.9e-12 Score=119.77 Aligned_cols=117 Identities=17% Similarity=0.252 Sum_probs=71.2
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+.+.|+++|++|+|||||+|+|++..+... .....|+ .+.+ +
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~--~~~~~~~-----------------------------------~~~~-~ 52 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT--VVSQEPL-----------------------------------SAAD-Y 52 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB--CCCSSCE-----------------------------------EETT-G
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCe--eeecCce-----------------------------------EEEE-e
Confidence 456799999999999999999999875321 0001110 0000 0
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCC-CCCCCHhHHHHHHHH-------hc
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPS-KLDVGPETEAILDQL-------KG 245 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~-~~~i~~e~~~ll~~l-------~~ 245 (468)
....+.++||||.......... ..+..+..+|++++|+|++ ....-......+..+ ..
T Consensus 53 --------~~~~~~l~Dt~G~~~~~~~~~~------~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (218)
T 1nrj_B 53 --------DGSGVTLVDFPGHVKLRYKLSD------YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCE 118 (218)
T ss_dssp --------GGSSCEEEECCCCGGGTHHHHH------HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHST
T ss_pred --------eCceEEEEECCCcHHHHHHHHH------HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhccccccc
Confidence 2256999999998654222111 1222234589999999998 322122222223222 12
Q ss_pred CCCcEEEEEeCCCCCCh
Q psy13475 246 REYQTRIILNKADQVKP 262 (468)
Q Consensus 246 ~~~~iiiVlNK~D~v~~ 262 (468)
.+.|+++|+||+|+...
T Consensus 119 ~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 119 NGIDILIACNKSELFTA 135 (218)
T ss_dssp TCCCEEEEEECTTSTTC
T ss_pred CCCCEEEEEEchHhccc
Confidence 46899999999999754
No 136
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.37 E-value=5.3e-12 Score=114.59 Aligned_cols=118 Identities=22% Similarity=0.328 Sum_probs=70.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+. .+..|+ ++..... .
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~-----~~~~~~-----------------------------------~t~~~~~-~ 41 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVR-----RGKRPG-----------------------------------VTRKIIE-I 41 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCS-----SSSSTT-----------------------------------CTTSCEE-E
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCc-----cCCCCC-----------------------------------ccceeEE-E
Confidence 5899999999999999999998753 111221 1111111 1
Q ss_pred ecCCCCCcceEEEeCCCCchhhhh---hhhccchhHHHHHh----hcccCEEEEEEcCCCCC----------CCHhHHHH
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQ---VERQFPFNDACQWF----IDRADIIFLVYDPSKLD----------VGPETEAI 239 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~---~~r~~d~~~~~~~~----~~~aDlIllV~Da~~~~----------i~~e~~~l 239 (468)
.. ..+.++||||+...... .+.. +......+ +..++++++|+|+..+. .......+
T Consensus 42 ~~-----~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~ 114 (190)
T 2cxx_A 42 EW-----KNHKIIDMPGFGFMMGLPKEVQER--IKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEF 114 (190)
T ss_dssp EE-----TTEEEEECCCBSCCTTSCHHHHHH--HHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHH
T ss_pred ec-----CCEEEEECCCccccccCCHHHHHH--HHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHH
Confidence 11 16899999997532110 0111 22222222 55678999999986420 01112234
Q ss_pred HHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 240 LDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 240 l~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
+..+...+.|+++|+||+|+...
T Consensus 115 ~~~~~~~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 115 YQFLRELDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp HHHHHHTTCCEEEEEECGGGCSC
T ss_pred HHHHHhcCCceEEEeehHhccCc
Confidence 45555567899999999999864
No 137
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.36 E-value=2e-13 Score=146.19 Aligned_cols=116 Identities=20% Similarity=0.238 Sum_probs=83.3
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+.|.|+++|.+|+|||||+|+|.+.++..... | ..|.+..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~-----~-----------------------------------giT~~i~ 42 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEA-----G-----------------------------------GITQHIG 42 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSS-----C-----------------------------------CBCCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-----C-----------------------------------ceeEEEe
Confidence 67889999999999999999999887653211 1 1111100
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
. ..+..+....++||||||+........ .++..+|++++|+|++. +..+++.+.+..+...+.|+++|
T Consensus 43 ~-~~v~~~~g~~i~~iDTPGhe~f~~~~~----------~~~~~aD~vILVVDa~d-g~~~qt~e~l~~~~~~~vPiIVV 110 (537)
T 3izy_P 43 A-FLVSLPSGEKITFLDTPGHAAFSAMRA----------RGTQVTDIVILVVAADD-GVMKQTVESIQHAKDAHVPIVLA 110 (537)
T ss_dssp S-CCBCSSCSSCCBCEECSSSCCTTTSBB----------SSSBSBSSCEEECBSSS-CCCHHHHHHHHHHHTTTCCEEEC
T ss_pred E-EEEEeCCCCEEEEEECCChHHHHHHHH----------HHHccCCEEEEEEECCC-CccHHHHHHHHHHHHcCCcEEEE
Confidence 0 011111225799999999765333222 33688999999999988 67888888888888888999999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+.+
T Consensus 111 iNKiDl~~ 118 (537)
T 3izy_P 111 INKCDKAE 118 (537)
T ss_dssp CBSGGGTT
T ss_pred Eecccccc
Confidence 99999874
No 138
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.36 E-value=1.9e-12 Score=131.46 Aligned_cols=123 Identities=24% Similarity=0.249 Sum_probs=76.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee-eE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR-LR 174 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~-i~ 174 (468)
+.|+|+|.+|||||||||+|++.+..+ + ++|| +|... +.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i-~-------------------------------~~~f--------tTl~p~~g 198 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKI-A-------------------------------DYHF--------TTLVPNLG 198 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEE-S-------------------------------STTS--------SCCCCCEE
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCcc-c-------------------------------cCCc--------cccCceEE
Confidence 459999999999999999998865421 1 1111 11111 11
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCC---CCCHhHHHHHHHHhc-----C
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKL---DVGPETEAILDQLKG-----R 246 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~---~i~~e~~~ll~~l~~-----~ 246 (468)
.+.++. ...++|+||||+.+.... .+. +.......++++|++++|+|++.. ..-.....++..+.. .
T Consensus 199 ~v~~~~--~~~~~l~DtPG~i~~a~~-~~~--l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~ 273 (342)
T 1lnz_A 199 MVETDD--GRSFVMADLPGLIEGAHQ-GVG--LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLT 273 (342)
T ss_dssp EEECSS--SCEEEEEEHHHHHHHTTC-TTT--THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTT
T ss_pred EEEeCC--CceEEEecCCCCcccccc-cch--hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhc
Confidence 122222 257999999998764221 111 222233446789999999999752 212233445555543 3
Q ss_pred CCcEEEEEeCCCCCChH
Q psy13475 247 EYQTRIILNKADQVKPE 263 (468)
Q Consensus 247 ~~~iiiVlNK~D~v~~~ 263 (468)
..|+++|+||+|+....
T Consensus 274 ~~p~ilV~NK~Dl~~~~ 290 (342)
T 1lnz_A 274 ERPQIIVANKMDMPEAA 290 (342)
T ss_dssp TSCBCBEEECTTSTTHH
T ss_pred CCCEEEEEECccCCCCH
Confidence 57999999999998654
No 139
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.35 E-value=1.6e-12 Score=117.12 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=67.5
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|||||||+|+|++..+.. ..||+.. .+ ...+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~~~~------~~~t~~~--------------------------------~~---~~~~ 47 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGSYQV------LEKTESE--------------------------------QY---KKEM 47 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSCCCC------CSSCSSS--------------------------------EE---EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC------cCCCcce--------------------------------eE---EEEE
Confidence 49999999999999999999987742 1222211 11 0111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHH---HHHHhc---CCCcE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAI---LDQLKG---REYQT 250 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~l---l~~l~~---~~~~i 250 (468)
.. +.....+.|+||||... ..++..+|++++|+|++....-.....+ +..+.. .+.|+
T Consensus 48 ~~-~~~~~~l~i~Dt~G~~~---------------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi 111 (178)
T 2iwr_A 48 LV-DGQTHLVLIREEAGAPD---------------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL 111 (178)
T ss_dssp EE-TTEEEEEEEEECSSSCC---------------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEE
T ss_pred EE-CCEEEEEEEEECCCCch---------------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 11 11124588999999653 1236779999999999762111112222 333333 35799
Q ss_pred EEEEeCCCCC
Q psy13475 251 RIILNKADQV 260 (468)
Q Consensus 251 iiVlNK~D~v 260 (468)
++|+||+|+.
T Consensus 112 ilv~nK~Dl~ 121 (178)
T 2iwr_A 112 ALVGTQDRIS 121 (178)
T ss_dssp EEEEECTTCB
T ss_pred EEEEECcccc
Confidence 9999999984
No 140
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.35 E-value=3.5e-13 Score=125.00 Aligned_cols=116 Identities=20% Similarity=0.210 Sum_probs=67.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|++..+.... .||+ +..+. ...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-----~~t~--------------------------------~~~~~--~~~ 66 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDS-----NHTI--------------------------------GVEFG--SRV 66 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-------------------------------------------------CCEE--EEE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccC-----CCcc--------------------------------cceeE--EEE
Confidence 35999999999999999999998764311 1111 00110 111
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH---hcCCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL---KGREYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l---~~~~~~iii 252 (468)
+.. ......+.|+||||.... ......++..+|++++|+|++....-.....++..+ ...+.|+++
T Consensus 67 ~~~-~~~~~~l~l~Dt~G~~~~----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piil 135 (200)
T 2o52_A 67 VNV-GGKTVKLQIWDTAGQERF----------RSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVIL 135 (200)
T ss_dssp EEE-TTEEEEEEEECCTTHHHH----------SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEE
T ss_pred EEE-CCeeeEEEEEcCCCcHhH----------HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 111 111246899999995431 222445678999999999997621111222333333 234679999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+.+
T Consensus 136 v~nK~Dl~~ 144 (200)
T 2o52_A 136 CGNKKDLDP 144 (200)
T ss_dssp EEECGGGGG
T ss_pred EEECCCccc
Confidence 999999864
No 141
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.35 E-value=1.7e-12 Score=120.31 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=70.7
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|||||||+|+|.|...... ..|++ +..+... .
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~-----~~~~~--------------------------------~~~~~~~--~ 64 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSA-----HEPEN--------------------------------PEDTYER--R 64 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGG-----GTTTS--------------------------------CTTEEEE--E
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCcc-----CCCCc--------------------------------ccceEEE--E
Confidence 3599999999999999999987644311 11111 1111111 1
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTR 251 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~ii 251 (468)
+.+ ......+.++||||...... .....++..+|++++|+|.+....-......+..+.. ...|++
T Consensus 65 ~~~-~~~~~~l~i~Dt~g~~~~~~---------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 134 (195)
T 3cbq_A 65 IMV-DKEEVTLVVYDIWEQGDAGG---------WLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI 134 (195)
T ss_dssp EEE-TTEEEEEEEECCCCCSGGGH---------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE
T ss_pred EEE-CCEEEEEEEEecCCCccchh---------hhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 111 12124578899999864211 1234457789999999999752111122334444432 357999
Q ss_pred EEEeCCCCCCh
Q psy13475 252 IILNKADQVKP 262 (468)
Q Consensus 252 iVlNK~D~v~~ 262 (468)
+|.||+|+.+.
T Consensus 135 lv~nK~Dl~~~ 145 (195)
T 3cbq_A 135 LVGNKSDLARS 145 (195)
T ss_dssp EEEECTTCTTT
T ss_pred EEeechhcccc
Confidence 99999998753
No 142
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.35 E-value=3.7e-12 Score=133.37 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=51.0
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCC-------HhHHHHHHHHhcCCCc-EEEEEe
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVG-------PETEAILDQLKGREYQ-TRIILN 255 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~-------~e~~~ll~~l~~~~~~-iiiVlN 255 (468)
..++||||||+.+ |...+...+..+|++++|+|++. +.. .+..+.+..+...+.| +++|+|
T Consensus 95 ~~~~iiDTPGh~~----------f~~~~~~~~~~aD~~ilVVDa~~-g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviN 163 (439)
T 3j2k_7 95 KHFTILDAPGHKS----------FVPNMIGGASQADLAVLVISARK-GEFETGFEKGGQTREHAMLAKTAGVKHLIVLIN 163 (439)
T ss_pred eEEEEEECCChHH----------HHHHHHhhHhhCCEEEEEEECCC-CccccccCCCchHHHHHHHHHHcCCCeEEEEee
Confidence 5799999999754 34445556789999999999987 332 4566666666666677 999999
Q ss_pred CCCCCC
Q psy13475 256 KADQVK 261 (468)
Q Consensus 256 K~D~v~ 261 (468)
|+|+.+
T Consensus 164 K~Dl~~ 169 (439)
T 3j2k_7 164 KMDDPT 169 (439)
T ss_pred cCCCcc
Confidence 999864
No 143
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.34 E-value=1.3e-12 Score=119.00 Aligned_cols=114 Identities=9% Similarity=0.170 Sum_probs=70.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.. ...||+.. .+ ...+
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~~~-----~~~~t~~~--------------------------------~~---~~~~ 48 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCFPE-----NYVPTVFE--------------------------------NY---TASF 48 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCS-----SCCCCSEE--------------------------------EE---EEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-----CCCCccce--------------------------------eE---EEEE
Confidence 59999999999999999999986642 11222210 00 0111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH-HHHHHHHhc--CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET-EAILDQLKG--REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~-~~ll~~l~~--~~~~iiiV 253 (468)
.. ......+.|+||||.... ......++..+|++++|+|++....-... ..++..+.. .+.|+++|
T Consensus 49 ~~-~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 117 (184)
T 1m7b_A 49 EI-DTQRIELSLWDTSGSPYY----------DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 117 (184)
T ss_dssp EC-SSCEEEEEEEEECCSGGG----------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEE
T ss_pred EE-CCEEEEEEEEECCCChhh----------hhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
Confidence 11 122246899999997542 12233457899999999999762100111 223333332 35799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+..
T Consensus 118 ~nK~Dl~~ 125 (184)
T 1m7b_A 118 GCKSDLRT 125 (184)
T ss_dssp EECGGGGG
T ss_pred EEcchhhc
Confidence 99999874
No 144
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.33 E-value=4.4e-12 Score=138.06 Aligned_cols=68 Identities=26% Similarity=0.293 Sum_probs=50.5
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCC------CCCHhHHHHHHHHhcCCC-cEEEEEeC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKL------DVGPETEAILDQLKGREY-QTRIILNK 256 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~------~i~~e~~~ll~~l~~~~~-~iiiVlNK 256 (468)
..++||||||+.. |...+...+..+|++|+|+|++.. .+..+..+.+..+...+. ++++|+||
T Consensus 245 ~~~~iiDTPG~e~----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNK 314 (611)
T 3izq_1 245 ANFTIVDAPGHRD----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 314 (611)
T ss_dssp CEEEEEECCSSSC----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred ceEEEEECCCCcc----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEec
Confidence 5799999999855 334455557899999999999751 134456666666665554 59999999
Q ss_pred CCCCC
Q psy13475 257 ADQVK 261 (468)
Q Consensus 257 ~D~v~ 261 (468)
+|+.+
T Consensus 315 iDl~~ 319 (611)
T 3izq_1 315 MDNVD 319 (611)
T ss_dssp TTTTT
T ss_pred ccccc
Confidence 99986
No 145
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.33 E-value=3.7e-12 Score=134.85 Aligned_cols=68 Identities=25% Similarity=0.261 Sum_probs=51.5
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC------CCHhHHHHHHHHhcCC-CcEEEEEeC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD------VGPETEAILDQLKGRE-YQTRIILNK 256 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~------i~~e~~~ll~~l~~~~-~~iiiVlNK 256 (468)
..++||||||+.+ |...+..++..+|++++|+|++... +.....+.+..+...+ .|+++|+||
T Consensus 111 ~~~~iiDTPG~~~----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK 180 (483)
T 3p26_A 111 ANFTIVDAPGHRD----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 180 (483)
T ss_dssp CEEEEECCCCCGG----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred ceEEEEECCCcHH----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEEC
Confidence 6799999999854 4455666789999999999998721 3456666666555555 469999999
Q ss_pred CCCCC
Q psy13475 257 ADQVK 261 (468)
Q Consensus 257 ~D~v~ 261 (468)
+|+.+
T Consensus 181 ~Dl~~ 185 (483)
T 3p26_A 181 MDNVD 185 (483)
T ss_dssp GGGGT
T ss_pred cCccc
Confidence 99986
No 146
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.32 E-value=3.1e-12 Score=137.00 Aligned_cols=67 Identities=24% Similarity=0.377 Sum_probs=57.5
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||+.+ |...+..++..+|++++|+|++. +.+.....++..+...+.|+++|+||+|+..
T Consensus 82 ~~i~liDTPG~~d----------f~~~~~~~l~~aD~allVvDa~~-g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 82 YLINLLDTPGHAD----------FTEDTYRTLTAVDSALMVIDAAK-GVEPRTIKLMEVCRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp EEEEEECCCCSTT----------CCHHHHHGGGGCSEEEEEEETTT-CSCHHHHHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred EEEEEEECCCchh----------HHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 6799999999865 44556667899999999999998 6788888888888888899999999999974
No 147
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.32 E-value=6.3e-13 Score=123.80 Aligned_cols=115 Identities=11% Similarity=0.120 Sum_probs=71.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+.. ...||+. ..+. ..+
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~~~~-----~~~~t~~--------------------------------~~~~---~~~ 50 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNKFPT-----DYIPTVF--------------------------------DNFS---ANV 50 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCS-----SCCCSSC--------------------------------CCEE---EEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-----cCCCccc--------------------------------eeEE---EEE
Confidence 59999999999999999999876531 1122221 1110 011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhcC--CCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKGR--EYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~~--~~~iiiV 253 (468)
.. ......+.|+||||.... ......++..+|++++|+|++....-.... .++..+... +.|+++|
T Consensus 51 ~~-~~~~~~~~i~Dt~G~~~~----------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv 119 (212)
T 2j0v_A 51 AV-DGQIVNLGLWDTAGQEDY----------SRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLV 119 (212)
T ss_dssp EC-SSCEEEEEEECCCCCCCC----------CC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEE
T ss_pred EE-CCEEEEEEEEECCCcHHH----------HHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 11 222246899999998542 223344578999999999987621011111 334444332 6799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 120 ~nK~Dl~~~ 128 (212)
T 2j0v_A 120 GTKLDLRDD 128 (212)
T ss_dssp EECHHHHTC
T ss_pred EeCHHhhhC
Confidence 999998653
No 148
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.32 E-value=8.4e-12 Score=129.13 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=54.5
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc-EEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ-TRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~-iiiVlNK~D~v~ 261 (468)
..++||||||+.+ |.......+..+|++++|+|++. +...+..+.+..+...+.| +++|+||+|+.+
T Consensus 75 ~~~~iiDtpG~~~----------f~~~~~~~~~~aD~~ilVvda~~-g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 75 RHYSHVDCPGHAD----------YIKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQVGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp CEEEEEECCCSGG----------GHHHHHHHHTTCSSEEEEEETTT-CCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC
T ss_pred eEEEEEECCChHH----------HHHHHHHHHHHCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCEEEEEEECccccC
Confidence 6799999999865 34445566889999999999987 5677777777777767778 889999999985
No 149
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.99 E-value=1.4e-13 Score=127.56 Aligned_cols=115 Identities=9% Similarity=0.114 Sum_probs=71.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|++..+... ..||+. +.+...
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~~~~~~-----~~~t~~------------------------------------~~~~~~ 70 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTNAFPGE-----YIPTVF------------------------------------DNYSAN 70 (204)
Confidence 499999999999999999998765311 112111 111100
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhcC--CCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKGR--EYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~~--~~~iiiV 253 (468)
.........+.|+||||... +......++..+|++++|+|++....-.... .++..+... +.|+++|
T Consensus 71 ~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv 140 (204)
T 3th5_A 71 VMVDGKPVNLGLWDTAGQED----------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILV 140 (204)
Confidence 10111124577999999654 2233445678999999999987632112222 344444433 6799999
Q ss_pred EeCCCCCCh
Q psy13475 254 LNKADQVKP 262 (468)
Q Consensus 254 lNK~D~v~~ 262 (468)
+||+|+.+.
T Consensus 141 ~NK~Dl~~~ 149 (204)
T 3th5_A 141 GTKLDLRDD 149 (204)
Confidence 999998754
No 150
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.31 E-value=4e-12 Score=134.62 Aligned_cols=111 Identities=19% Similarity=0.189 Sum_probs=72.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|||||||+|+|++.++.. ..||.. .. ...+
T Consensus 324 ki~lvG~~nvGKSsLl~~l~~~~~~~------~~~T~~---------------------------------~~---~~~~ 361 (497)
T 3lvq_E 324 RILMLGLDAAGKTTILYKLKLGQSVT------TIPTVG---------------------------------FN---VETV 361 (497)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCCC------CCCCSS---------------------------------EE---EEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC------cCCccc---------------------------------ee---EEEE
Confidence 49999999999999999999987532 122221 10 1112
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~iii 252 (468)
.. ....+.|+||||.... ......++..+|++|+|+|++...--.+....+..+.. .+.|+++
T Consensus 362 ~~---~~~~~~l~Dt~G~~~~----------~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 428 (497)
T 3lvq_E 362 TY---KNVKFNVWDVGGQDKI----------RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI 428 (497)
T ss_dssp ES---SSCEEEEEEECCCGGG----------SGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEE
T ss_pred Ee---CCEEEEEEECCCcHHH----------HHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEE
Confidence 21 1257999999996542 23344568899999999999863111122223333322 3679999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+.+.
T Consensus 429 v~NK~Dl~~~ 438 (497)
T 3lvq_E 429 FANKQDLPDA 438 (497)
T ss_dssp EEECCSSSSC
T ss_pred EEECCCCCcC
Confidence 9999999753
No 151
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.31 E-value=2.2e-12 Score=120.68 Aligned_cols=115 Identities=9% Similarity=0.152 Sum_probs=71.2
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|.+|+|||||+|+|++..+.. ...||+.. .+ ...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~~-----~~~~t~~~--------------------------------~~---~~~ 68 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFPE-----NYVPTVFE--------------------------------NY---TAS 68 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCS-----SCCCCSEE--------------------------------EE---EEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-----CcCCccce--------------------------------eE---EEE
Confidence 359999999999999999999987642 11222210 10 011
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH-HHHHHHHhc--CCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET-EAILDQLKG--REYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~-~~ll~~l~~--~~~~iii 252 (468)
+.. ......+.|+||||..... .....++..+|++++|+|++....-... ..++..+.. .+.|+++
T Consensus 69 ~~~-~~~~~~l~i~Dt~G~~~~~----------~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piil 137 (205)
T 1gwn_A 69 FEI-DTQRIELSLWDTSGSPYYD----------NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 137 (205)
T ss_dssp EES-SSSEEEEEEEEECCSGGGT----------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEE
T ss_pred EEE-CCEEEEEEEEeCCCcHhhh----------HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEE
Confidence 111 1222468999999975421 2233357899999999999762100111 223333432 3579999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+..
T Consensus 138 v~nK~Dl~~ 146 (205)
T 1gwn_A 138 VGCKSDLRT 146 (205)
T ss_dssp EEECGGGGG
T ss_pred EEechhhcc
Confidence 999999874
No 152
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.30 E-value=1.3e-12 Score=122.83 Aligned_cols=116 Identities=14% Similarity=0.083 Sum_probs=69.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCccc-ccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYS-QNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~-~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
..|+++|.+|+|||||+|+++...+. .+++. .+++.....
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t---------------------------------------~~~~~~~~~ 56 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVAT---------------------------------------LGVEVHPLV 56 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETT---------------------------------------TTEEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc---------------------------------------cceeEEEEE
Confidence 35999999999999999996544332 11111 111111111
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc--CCCcEEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG--REYQTRI 252 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~--~~~~iii 252 (468)
... ......+.|+||||... +......++..+|++++|+|++....-.....++..+.. .+.|+++
T Consensus 57 ~~~--~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~il 124 (221)
T 3gj0_A 57 FHT--NRGPIKFNVWDTAGQEK----------FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVL 124 (221)
T ss_dssp EEE--TTEEEEEEEEEECSGGG----------TSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEE
T ss_pred EEE--CCEEEEEEEEeCCChHH----------HhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 111 12224689999999543 222344567899999999999862111112233333332 2579999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+.+.
T Consensus 125 v~nK~Dl~~~ 134 (221)
T 3gj0_A 125 CGNKVDIKDR 134 (221)
T ss_dssp EEECTTSSSC
T ss_pred EEECCccccc
Confidence 9999998753
No 153
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.30 E-value=6.9e-12 Score=114.91 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=69.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|||||||+|.+++..+... ..||...+. ..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~-----~~~t~~~~~------------------------------------~~~ 60 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQE-----ESPEGGRFK------------------------------------KEI 60 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCC-----CCTTCEEEE------------------------------------EEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-----cCCCcceEE------------------------------------EEE
Confidence 499999999999999999998876421 122211111 111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC----CCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR----EYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~----~~~iii 252 (468)
.+ ......+.|+||||..... ++..+|++++|+|.+....-.....++..+... +.|+++
T Consensus 61 ~~-~~~~~~l~i~Dt~G~~~~~---------------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piil 124 (184)
T 3ihw_A 61 VV-DGQSYLLLIRDEGGPPELQ---------------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVL 124 (184)
T ss_dssp EE-TTEEEEEEEEECSSSCCHH---------------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEE
T ss_pred EE-CCEEEEEEEEECCCChhhh---------------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 11 1112357889999975421 467899999999998621111223455555443 469999
Q ss_pred EEeCCCCC
Q psy13475 253 ILNKADQV 260 (468)
Q Consensus 253 VlNK~D~v 260 (468)
|.||+|+.
T Consensus 125 v~nK~Dl~ 132 (184)
T 3ihw_A 125 VGTQDAIS 132 (184)
T ss_dssp EEECTTCB
T ss_pred EEECcccc
Confidence 99999984
No 154
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.30 E-value=9.6e-12 Score=128.48 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=53.3
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc-EEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ-TRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~-iiiVlNK~D~v~ 261 (468)
..++||||||+.+ |.......+..+|++++|+|++. +...+..+.+..+...+.| +++|+||+|+.+
T Consensus 66 ~~~~iiDtpG~~~----------f~~~~~~~~~~aD~~ilVvda~~-g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 66 RHYAHTDCPGHAD----------YVKNMITGTAPLDGCILVVAAND-GPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp CEEEEEECSSHHH----------HHHHHHHTSSCCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred eEEEEEECCChHH----------HHHHHHhhHhhCCEEEEEEECCC-CCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence 6799999999765 33344555789999999999988 5667777777777666778 689999999985
No 155
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.29 E-value=1.6e-11 Score=128.27 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=51.3
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCC-cEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREY-QTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~-~iiiVlNK~D~v~ 261 (468)
..++||||||+.+ |.......+..+|++++|+|++. +...+..+.+..+...+. ++++|+||+|+.+
T Consensus 104 ~~~~iiDtpGh~~----------f~~~~~~~~~~aD~~ilVvDa~~-g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 104 RKFIIADTPGHEQ----------YTRNMATGASTCDLAIILVDARY-GVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEEEEEECCCSGG----------GHHHHHHHHTTCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred ceEEEEECCChHH----------HHHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 5799999999754 33344456799999999999987 566666666665555554 5999999999986
No 156
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.29 E-value=9.3e-12 Score=113.65 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=67.3
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|||||||+|.|++...+..+. ..||+. ..+.......
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~~~---~~~t~g--------------------------------~~~~~~~~~~ 48 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLGM---QSATVG--------------------------------IDVKDWPIQI 48 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--------------CS--------------------------------EEEEEEEC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccCCC---cceecc--------------------------------EEeEEeeecc
Confidence 59999999999999999999863221111 112211 0000000000
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCC-HhHHHHHHHHhc--CCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVG-PETEAILDQLKG--REYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~-~e~~~ll~~l~~--~~~~iiiV 253 (468)
.........+.++||||..... .....++..+|++++|+|.+...-+ .....++..+.. .+.|+++|
T Consensus 49 ~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv 118 (184)
T 2zej_A 49 RDKRKRDLVLNVWDFAGREEFY----------STHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILV 118 (184)
T ss_dssp -------CEEEEEEECSHHHHH----------TTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEE
T ss_pred ccCCCCceEEEEEecCCCHHHH----------HhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 0001112468999999965421 1234456789999999998752000 122233333322 35799999
Q ss_pred EeCCCCCChHHH
Q psy13475 254 LNKADQVKPEEL 265 (468)
Q Consensus 254 lNK~D~v~~~el 265 (468)
.||+|+.+....
T Consensus 119 ~nK~Dl~~~~~~ 130 (184)
T 2zej_A 119 GTHLDVSDEKQR 130 (184)
T ss_dssp EECGGGCCHHHH
T ss_pred EECCCcccchhh
Confidence 999999865443
No 157
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.28 E-value=2.1e-12 Score=137.12 Aligned_cols=115 Identities=21% Similarity=0.305 Sum_probs=78.4
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+.|.|+++|++++|||||+|+|++..+... ...|.+.. . +..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~-e~~GIT~~----------------------i----------~~~----- 44 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASG-EAGGITQH----------------------I----------GAY----- 44 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBT-TBCCCCCC----------------------S----------SCC-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccc-cCCCeeEe----------------------E----------EEE-----
Confidence 677899999999999999999998654310 00000000 0 000
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
.+.. ....++||||||+.+...... ..+..+|++++|+|++. +..++..+.+..+...+.|+++|
T Consensus 45 -~v~~---~~~~i~~iDTPGhe~f~~~~~----------~~~~~aD~aILVVda~~-g~~~qT~e~l~~~~~~~vPiIVv 109 (501)
T 1zo1_I 45 -HVET---ENGMITFLDTPGHAAFTSMRA----------RGAQATDIVVLVVAADD-GVMPQTIEAIQHAKAAQVPVVVA 109 (501)
T ss_dssp -CCCT---TSSCCCEECCCTTTCCTTSBC----------SSSBSCSSEEEEEETTT-BSCTTTHHHHHHHHHTTCCEEEE
T ss_pred -EEEE---CCEEEEEEECCCcHHHHHHHH----------HHHhhCCEEEEEeeccc-CccHHHHHHHHHHHhcCceEEEE
Confidence 0111 124689999999865332222 23788999999999987 55666667777777778899999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+.+
T Consensus 110 iNKiDl~~ 117 (501)
T 1zo1_I 110 VNKIDKPE 117 (501)
T ss_dssp EECSSSST
T ss_pred EEeccccc
Confidence 99999874
No 158
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.28 E-value=2.4e-11 Score=124.53 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=75.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|+|+.+...+ . ......
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~giTi---~--------------------------------------------~~~~~~ 55 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKKGTSS---D--------------------------------------------ITMYNN 55 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEEEEES---S--------------------------------------------SEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCEEE---E--------------------------------------------eeEEEE
Confidence 69999999999999999998221110 0 000111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcE-EEEEe
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQT-RIILN 255 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~i-iiVlN 255 (468)
.. ....++||||||+.+ |.......+..+|++++|+| .. +...+..+.+..+...+.|. ++|+|
T Consensus 56 ~~---~~~~i~iiDtPGh~~----------f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~~i~~~ivvvN 120 (370)
T 2elf_A 56 DK---EGRNMVFVDAHSYPK----------TLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLLGFKHGIIALT 120 (370)
T ss_dssp CS---SSSEEEEEECTTTTT----------CHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ec---CCeEEEEEECCChHH----------HHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHcCCCeEEEEEE
Confidence 11 125699999999864 44445555789999999999 65 66777777777776667777 99999
Q ss_pred -CCCCCChHHHH
Q psy13475 256 -KADQVKPEELM 266 (468)
Q Consensus 256 -K~D~v~~~el~ 266 (468)
|+|+ +.+.+.
T Consensus 121 NK~Dl-~~~~~~ 131 (370)
T 2elf_A 121 RSDST-HMHAID 131 (370)
T ss_dssp CGGGS-CHHHHH
T ss_pred eccCC-CHHHHH
Confidence 9999 654433
No 159
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.27 E-value=1.6e-11 Score=113.86 Aligned_cols=122 Identities=17% Similarity=0.231 Sum_probs=71.7
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcc-cccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEY-SQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~-~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
..|+++|++|+|||||+|+|+|..+ +.+++. .+++.. ..
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~---------------------------------------~G~~~~-~~ 66 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKT---------------------------------------PGRTQL-IN 66 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC----------------------------------------------------CC-EE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCccccccCC---------------------------------------Ccccee-eE
Confidence 3599999999999999999999863 211111 111111 00
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhh--hccchhHHHHHhh---cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVE--RQFPFNDACQWFI---DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ 249 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~--r~~d~~~~~~~~~---~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ 249 (468)
..... .++.++||||+........ +. +......++ ..+|.+++++|+.. ..+.....+...+...+.|
T Consensus 67 ~~~~~----~~~~l~Dt~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~d~~~-~~~~~~~~~~~~~~~~~~~ 139 (210)
T 1pui_A 67 LFEVA----DGKRLVDLPGYGYAEVPEEMKRK--WQRALGEYLEKRQSLQGLVVLMDIRH-PLKDLDQQMIEWAVDSNIA 139 (210)
T ss_dssp EEEEE----TTEEEEECCCCC------CCHHH--HHHHHHHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHHHTTCC
T ss_pred EEEec----CCEEEEECcCCcccccCHHHHHH--HHHHHHHHHHhhhcccEEEEEEECCC-CCchhHHHHHHHHHHcCCC
Confidence 11111 2688999999864211000 01 112222222 57899999999976 4455445566666666789
Q ss_pred EEEEEeCCCCCChHH
Q psy13475 250 TRIILNKADQVKPEE 264 (468)
Q Consensus 250 iiiVlNK~D~v~~~e 264 (468)
+++|.||+|+.+..+
T Consensus 140 ~~~v~nK~D~~s~~~ 154 (210)
T 1pui_A 140 VLVLLTKADKLASGA 154 (210)
T ss_dssp EEEEEECGGGSCHHH
T ss_pred eEEEEecccCCCchh
Confidence 999999999987644
No 160
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.27 E-value=1.2e-11 Score=117.31 Aligned_cols=115 Identities=19% Similarity=0.366 Sum_probs=71.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|.+|||||||++.+++..+... ..||. |..+..+. .
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f~~~-----~~~Ti--------------------------------g~d~~~k~--~ 55 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSFDNT-----YQATI--------------------------------GIDFLSKT--M 55 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-----------------------------------------------CEEEE--E
T ss_pred EEEEECcCCcCHHHHHHHHHhCCCCCC-----cCCcc--------------------------------ceEEEEEE--E
Confidence 499999999999999999998776421 11221 11111111 1
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHH---hcCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQL---KGREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l---~~~~~~iiiV 253 (468)
.. ......+.|+||+|... |......+...+|++++|+|.+....-......+..+ ...+.|+++|
T Consensus 56 ~~-~~~~v~l~iwDtaGqe~----------~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilV 124 (216)
T 4dkx_A 56 YL-EDRTIRLQLWDTAGLER----------FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV 124 (216)
T ss_dssp EC-SSCEEEEEEECCSCTTT----------CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEE
T ss_pred Ee-cceEEEEEEEECCCchh----------hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 11 22224688999999643 3455677789999999999987621111222333333 2445799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
.||+|+.+
T Consensus 125 gNK~Dl~~ 132 (216)
T 4dkx_A 125 GNKTDLAD 132 (216)
T ss_dssp EECTTCGG
T ss_pred eeccchHh
Confidence 99999864
No 161
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.26 E-value=1.4e-11 Score=132.04 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=56.5
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
..++||||||+.+ |...+..++..+|++++|+|++. +.......++..+...+.|+++|+||+|+...
T Consensus 82 ~~i~liDTPG~~d----------f~~~~~~~l~~aD~~IlVvDa~~-g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 82 CLVNLLDTPGHED----------FSEDTYRTLTAVDCCLMVIDAAK-GVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp EEEEEECCCCSTT----------CCHHHHHGGGGCSEEEEEEETTT-CSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred eEEEEEECCCChh----------HHHHHHHHHHHCCEEEEEEeCCc-cchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 5799999999854 34445566889999999999988 56777888888888778899999999999753
No 162
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=1.4e-11 Score=116.47 Aligned_cols=117 Identities=18% Similarity=0.166 Sum_probs=68.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|||||||+|+++|.....++.. |+| |.++.... +
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~----~~~--------------------------------g~d~~~~~--i 80 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDC----EVL--------------------------------GEDTYERT--L 80 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCTTCCC-------C--------------------------------CTTEEEEE--E
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCcC----Ccc--------------------------------ceeeEEEE--E
Confidence 499999999999999999998655332211 111 11211111 1
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~iii 252 (468)
.+ ......+.++||+|...... .....+...+|++++|+|.+....-.....++..+.. .+.|+++
T Consensus 81 ~~-~~~~~~l~~~Dt~g~~~~~~---------~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piil 150 (211)
T 2g3y_A 81 MV-DGESATIILLDMWENKGENE---------WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150 (211)
T ss_dssp EE-TTEEEEEEEECCTTTTHHHH---------HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEE
T ss_pred EE-CCeeeEEEEeecCCCcchhh---------hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEE
Confidence 11 12123578999999654211 1123346778999999998752100112233333432 3579999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|.||+|+..
T Consensus 151 VgNK~DL~~ 159 (211)
T 2g3y_A 151 VGNKSDLVR 159 (211)
T ss_dssp EEECTTCGG
T ss_pred EEEChHHhc
Confidence 999999864
No 163
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.25 E-value=5.9e-12 Score=132.57 Aligned_cols=67 Identities=18% Similarity=0.126 Sum_probs=48.3
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCH-------hHHHHHHHHhcCCCc-EEEEEe
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGP-------ETEAILDQLKGREYQ-TRIILN 255 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~-------e~~~ll~~l~~~~~~-iiiVlN 255 (468)
..++||||||+.+ |.......+..+|++++|+|++. +..+ +..+.+..+...+.| +++|+|
T Consensus 85 ~~~~iiDtPGh~~----------f~~~~~~~~~~aD~~ilVvda~~-g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviN 153 (458)
T 1f60_A 85 YQVTVIDAPGHRD----------FIKNMITGTSQADCAILIIAGGV-GEFEAGISKDGQTREHALLAFTLGVRQLIVAVN 153 (458)
T ss_dssp EEEEEEECCCCTT----------HHHHHHHSSSCCSEEEEEEECSH-HHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ceEEEEECCCcHH----------HHHHHHhhhhhCCEEEEEEeCCc-CccccccCcchhHHHHHHHHHHcCCCeEEEEEE
Confidence 5799999999754 44455666889999999999975 2211 444445445555555 999999
Q ss_pred CCCCCC
Q psy13475 256 KADQVK 261 (468)
Q Consensus 256 K~D~v~ 261 (468)
|+|+.+
T Consensus 154 K~Dl~~ 159 (458)
T 1f60_A 154 KMDSVK 159 (458)
T ss_dssp CGGGGT
T ss_pred cccccc
Confidence 999983
No 164
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.25 E-value=1.1e-11 Score=125.94 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=37.7
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCChH
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKPE 263 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~~ 263 (468)
.+++||||||+.... ....+.+|++++|+|++.. .....+...+ ...|.++|+||+|+.+..
T Consensus 167 ~~~iliDT~Gi~~~~-------------~~l~~~~d~vl~V~d~~~~---~~~~~i~~~i--l~~~~ivVlNK~Dl~~~~ 228 (349)
T 2www_A 167 YDIILIETVGVGQSE-------------FAVADMVDMFVLLLPPAGG---DELQGIKRGI--IEMADLVAVTKSDGDLIV 228 (349)
T ss_dssp CSEEEEECCCC--CH-------------HHHHTTCSEEEEEECCC-----------------CCSCSEEEECCCSGGGHH
T ss_pred CCEEEEECCCcchhh-------------hhHHhhCCEEEEEEcCCcc---hhHHHhHHHH--HhcCCEEEEeeecCCCch
Confidence 579999999986431 1125689999999999752 1111111112 235889999999987543
Q ss_pred H
Q psy13475 264 E 264 (468)
Q Consensus 264 e 264 (468)
.
T Consensus 229 ~ 229 (349)
T 2www_A 229 P 229 (349)
T ss_dssp H
T ss_pred h
Confidence 3
No 165
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.25 E-value=1.1e-11 Score=136.96 Aligned_cols=68 Identities=24% Similarity=0.384 Sum_probs=56.4
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
..++||||||+.+ |...+..++..+|++++|+|+.. +.+.....++..+...+.|+++|+||+|+...
T Consensus 75 ~~i~liDTPG~~d----------f~~~~~~~l~~aD~~llVvDa~~-g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 75 HRVNIIDTPGHVD----------FTVEVERSLRVLDGAVTVLDAQS-GVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp EEEEEECCCCCSS----------CCHHHHHHHHHCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred eeEEEEECcCCcc----------hHHHHHHHHHHCCEEEEEECCCC-CCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 6799999999865 33445666788999999999987 67777778888887778999999999999753
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.25 E-value=8.2e-12 Score=135.41 Aligned_cols=133 Identities=17% Similarity=0.273 Sum_probs=81.5
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
+.|.|+++|.+|+|||||+|+|++..+.... ..|.+++... ..+. +..+.....+.....
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e-~ggiT~~ig~-~~~~------------------~~~~~~~~~~~~~~~ 63 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE-AGGITQHIGA-TEIP------------------MDVIEGICGDFLKKF 63 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTE-EEEE------------------HHHHHHHSCGGGGGC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcccc-CCceecccCe-EEEe------------------echhhhhcccccccc
Confidence 6788999999999999999999987553110 0011111110 0000 000000000000000
Q ss_pred EEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEE
Q psy13475 174 RGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRII 253 (468)
Q Consensus 174 ~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiV 253 (468)
.. ......++||||||+.+......+ .+..+|++++|+|++. ++..+..+.+..+...+.|+++|
T Consensus 64 ---~v-~~~~~~i~liDTPGhe~F~~~~~r----------~~~~aD~aILVvDa~~-Gv~~qT~e~l~~l~~~~vPiIVV 128 (594)
T 1g7s_A 64 ---SI-RETLPGLFFIDTPGHEAFTTLRKR----------GGALADLAILIVDINE-GFKPQTQEALNILRMYRTPFVVA 128 (594)
T ss_dssp ---GG-GGTCCEEEEECCCTTSCCTTSBCS----------SSBSCSEEEEEEETTT-CCCHHHHHHHHHHHHTTCCEEEE
T ss_pred ---cc-ccccCCEEEEECCCcHHHHHHHHH----------HHhhCCEEEEEEECCC-CccHhHHHHHHHHHHcCCeEEEE
Confidence 00 001135999999998654322222 3678999999999988 67788888888888888999999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+..
T Consensus 129 iNKiDl~~ 136 (594)
T 1g7s_A 129 ANKIDRIH 136 (594)
T ss_dssp EECGGGST
T ss_pred eccccccc
Confidence 99999863
No 167
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.24 E-value=9.2e-11 Score=121.49 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=50.8
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCC-CHhHHHHHHHHhcCC-CcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDV-GPETEAILDQLKGRE-YQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i-~~e~~~ll~~l~~~~-~~iiiVlNK~D~v~ 261 (468)
..++||||||+.+ |.......+..+|++++|+|++. +. ..+..+.+..+...+ .|+++|+||+|+.+
T Consensus 83 ~~i~iiDtPGh~~----------f~~~~~~~~~~~D~~ilVvda~~-g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 83 RRVSFIDAPGHEA----------LMTTMLAGASLMDGAILVIAANE-PCPRPQTREHLMALQIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp EEEEEEECSSHHH----------HHHHHHHCGGGCSEEEEEEETTS-CSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred cEEEEEECCChHH----------HHHHHHhhhhhCCEEEEEEECCC-CCCChhHHHHHHHHHHcCCCcEEEEEECccCCC
Confidence 4699999999754 33334455788999999999987 43 555555554444333 47999999999997
Q ss_pred hHHH
Q psy13475 262 PEEL 265 (468)
Q Consensus 262 ~~el 265 (468)
.++.
T Consensus 152 ~~~~ 155 (410)
T 1kk1_A 152 KEKA 155 (410)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 168
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.23 E-value=4.2e-11 Score=124.04 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=49.9
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCC-CHhHHHHHHHHhcCC-CcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDV-GPETEAILDQLKGRE-YQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i-~~e~~~ll~~l~~~~-~~iiiVlNK~D~v~ 261 (468)
..++||||||+.+ |.......+..+|++++|+|++. +. ..+..+.+..+...+ .|+++|+||+|+.+
T Consensus 81 ~~i~iiDtPGh~~----------f~~~~~~~~~~~D~~ilVvda~~-g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 81 RRVSFVDSPGHET----------LMATMLSGASLMDGAILVIAANE-PCPQPQTKEHLMALEILGIDKIIIVQNKIDLVD 149 (408)
T ss_dssp EEEEEEECSSHHH----------HHHHHHTTCSCCSEEEEEEETTS-CSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSC
T ss_pred cEEEEEECCCHHH----------HHHHHHHhHhhCCEEEEEEECCC-CCCCchhHHHHHHHHHcCCCeEEEEEEccCCCC
Confidence 4699999999754 22333444678999999999987 43 555555555554444 47999999999986
Q ss_pred hHH
Q psy13475 262 PEE 264 (468)
Q Consensus 262 ~~e 264 (468)
.++
T Consensus 150 ~~~ 152 (408)
T 1s0u_A 150 EKQ 152 (408)
T ss_dssp TTT
T ss_pred HHH
Confidence 543
No 169
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.23 E-value=4.3e-11 Score=129.80 Aligned_cols=67 Identities=21% Similarity=0.263 Sum_probs=53.1
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||+.+ |......++..+|.+++|+|++. +.+.+....+..+...+.|+++|+||+|+.+
T Consensus 71 ~~l~liDTPGh~d----------F~~ev~~~l~~aD~aILVVDa~~-gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 71 YQLNFIDTPGHVD----------FSYEVSRSLAACEGALLVVDAGQ-GVEAQTLANCYTAMEMDLEVVPVLNKIDLPA 137 (599)
T ss_dssp EEEEEEECCCCGG----------GHHHHHHHHHHCSEEEEEEETTT-CCCTHHHHHHHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCchH----------HHHHHHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEeeeccCccc
Confidence 5699999999865 33445555788999999999987 5666666666655566789999999999975
No 170
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.22 E-value=3.8e-11 Score=130.12 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=53.6
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||+.+. ......++..+|.+++|+|++. +.+.+....+..+...+.|+++|+||+|+.+
T Consensus 73 ~~inliDTPGh~dF----------~~ev~r~l~~aD~aILVVDa~~-gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 73 YKLHLIDTPGHVDF----------SYEVSRALAACEGALLLIDASQ-GIEAQTVANFWKAVEQDLVIIPVINKIDLPS 139 (600)
T ss_dssp EEEEEECCCCSGGG----------HHHHHHHHHTCSEEEEEEETTT-BCCHHHHHHHHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCcHhH----------HHHHHHHHHhCCEEEEEEECCC-CccHHHHHHHHHHHHCCCCEEEEEeccCccc
Confidence 56899999998763 3344455789999999999988 6677777666666667889999999999975
No 171
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.21 E-value=1.9e-12 Score=140.47 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=40.6
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCC----CC--CHhHHHHHHHHhcCCCc-EEEEEeC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKL----DV--GPETEAILDQLKGREYQ-TRIILNK 256 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~----~i--~~e~~~ll~~l~~~~~~-iiiVlNK 256 (468)
..++||||||+.+.... ....+..+|++|+|+|++.. ++ ..+..+.+..+...+.| +++|+||
T Consensus 255 ~~i~iiDTPGh~~f~~~----------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNK 324 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISG----------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNK 324 (592)
T ss_dssp ----CCEEESSSEEEEE----------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEEC
T ss_pred eEEEEEECCChHHHHHH----------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEec
Confidence 57999999998753222 22336789999999999752 12 45566666666666665 9999999
Q ss_pred CCCCC
Q psy13475 257 ADQVK 261 (468)
Q Consensus 257 ~D~v~ 261 (468)
+|+++
T Consensus 325 iDl~~ 329 (592)
T 3mca_A 325 LDLMS 329 (592)
T ss_dssp GGGGT
T ss_pred ccccc
Confidence 99975
No 172
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.21 E-value=2.8e-11 Score=126.54 Aligned_cols=67 Identities=24% Similarity=0.209 Sum_probs=50.8
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC-------CCHhHHHHHHHHhcCCC-cEEEEEe
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD-------VGPETEAILDQLKGREY-QTRIILN 255 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~-------i~~e~~~ll~~l~~~~~-~iiiVlN 255 (468)
..++||||||+.+ |......++..+|++++|+|++. + +..+..+.+..+...+. ++++|+|
T Consensus 84 ~~~~iiDtpG~~~----------f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviN 152 (435)
T 1jny_A 84 YFFTIIDAPGHRD----------FVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVN 152 (435)
T ss_dssp CEEEECCCSSSTT----------HHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEE
T ss_pred eEEEEEECCCcHH----------HHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEE
Confidence 5799999999865 33445556889999999999987 4 44456666655555554 6899999
Q ss_pred CCCCCC
Q psy13475 256 KADQVK 261 (468)
Q Consensus 256 K~D~v~ 261 (468)
|+|+.+
T Consensus 153 K~Dl~~ 158 (435)
T 1jny_A 153 KMDLTE 158 (435)
T ss_dssp CGGGSS
T ss_pred cccCCC
Confidence 999986
No 173
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.20 E-value=1.5e-11 Score=113.64 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=65.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|||||||+|+++|.....++... ++ |.++.... +
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~---~~---------------------------------~~~~~~~~--~ 49 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXE---VL---------------------------------GEDTYERT--L 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSCCC----G---GG---------------------------------CTTEEEEE--E
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCcCcccc---cc---------------------------------ceeEEEEE--E
Confidence 4999999999999999999975443222110 00 11221111 1
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh----cCCCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK----GREYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~----~~~~~iii 252 (468)
.+ +.....+.++||+|..... +. + ...+...+|++++|+|.+....-.....++..+. ..+.|+++
T Consensus 50 ~~-~~~~~~l~~~Dt~~~~~~~----~~--~---~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piil 119 (192)
T 2cjw_A 50 MV-DGESATIILLDMWENKGEN----EW--L---HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119 (192)
T ss_dssp EE-TTEEEEEEEECCCCC--------CT--T---GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred EE-CCeEEEEEEEEeccCcchh----hh--H---HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEE
Confidence 11 1212356889999965421 11 1 1223567899999999875210011222222222 23579999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|.||+|+..
T Consensus 120 V~NK~Dl~~ 128 (192)
T 2cjw_A 120 VGNKSDLVR 128 (192)
T ss_dssp EEECTTCGG
T ss_pred EEechhhhc
Confidence 999999864
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.19 E-value=3e-11 Score=133.25 Aligned_cols=68 Identities=25% Similarity=0.412 Sum_probs=56.3
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
..++||||||+.+ |...+..++..+|.+++|+|+.. +.+.+...++..+...+.|+++|+||+|+...
T Consensus 77 ~~i~liDTPG~~d----------f~~~~~~~l~~aD~~ilVvDa~~-g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 77 HRINIIDTPGHVD----------FTIEVERSMRVLDGAIVVFDSSQ-GVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp EEEEEECCCSSTT----------CHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred eEEEEEECcCccc----------hHHHHHHHHHHCCEEEEEEECCC-CcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 6799999999865 44456666889999999999988 66777777777777778999999999999753
No 175
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.17 E-value=1.4e-11 Score=122.19 Aligned_cols=114 Identities=9% Similarity=0.116 Sum_probs=70.8
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|.+|+|||||+|.+++..+.. . ..||+ .+.+...
T Consensus 157 ~i~i~G~~~~GKssli~~~~~~~~~~--~---~~~t~------------------------------------~~~~~~~ 195 (332)
T 2wkq_A 157 KCVVVGDGAVGKTCLLISYTTNAFPG--E---YIPTV------------------------------------FDNYSAN 195 (332)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCC--S---CCCCS------------------------------------EEEEEEE
T ss_pred EEEEECCCCCChHHHHHHHHhCCCCc--c---cCCcc------------------------------------cceeEEE
Confidence 59999999999999999999876531 1 12222 1111111
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHh-HH-HHHHHHhcC--CCcEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPE-TE-AILDQLKGR--EYQTRI 252 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e-~~-~ll~~l~~~--~~~iii 252 (468)
.........+.|+||||..... .....++..+|++++|+|++.. .+-+ .. .++..+... +.|+++
T Consensus 196 ~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~il 264 (332)
T 2wkq_A 196 VMVDGKPVNLGLWDTAGLEDYD----------RLRPLSYPQTDVFLICFSLVSP-ASFHHVRAKWYPEVRHHCPNTPIIL 264 (332)
T ss_dssp EEETTEEEEEEEEEECCCGGGT----------TTGGGGCTTCSEEEEEEETTCH-HHHHHHHHTHHHHHHHHCTTSCEEE
T ss_pred EEECCEEEEEEEEeCCCchhhh----------HHHHHhccCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhhCCCCcEEE
Confidence 1112212356799999975432 2233457899999999999762 1111 11 233333322 679999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+.+.
T Consensus 265 v~nK~Dl~~~ 274 (332)
T 2wkq_A 265 VGTKLDLRDD 274 (332)
T ss_dssp EEECHHHHTC
T ss_pred EEEchhcccc
Confidence 9999998653
No 176
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.16 E-value=4.6e-12 Score=129.79 Aligned_cols=123 Identities=18% Similarity=0.167 Sum_probs=76.3
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC-----cccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN-----EYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGL 169 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~-----~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt 169 (468)
...|+++|.+|+|||||+|+|+|. ....++.. ++||
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~---------------------------------------~gtT 202 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYF---------------------------------------PGTT 202 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEEC---------------------------------------TTSS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCC---------------------------------------CCeE
Confidence 346999999999999999999997 22222222 4566
Q ss_pred eeeeEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhh--cccCEEEEEEcCCCC-CCCHhHHHHHHHHhcC
Q psy13475 170 LDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFI--DRADIIFLVYDPSKL-DVGPETEAILDQLKGR 246 (468)
Q Consensus 170 ~~~i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~--~~aDlIllV~Da~~~-~i~~e~~~ll~~l~~~ 246 (468)
++..... .. .++.++||||+.+... .....+ .+....+. .+.|.+++++++... -++ .. ..++.+.+.
T Consensus 203 ~~~~~~~-~~----~~~~liDtPG~~~~~~-~~~~l~-~~~l~~~~~~~~i~~~~~~l~~~~~~~~g-~l-~~l~~l~~~ 273 (369)
T 3ec1_A 203 LDMIEIP-LE----SGATLYDTPGIINHHQ-MAHFVD-ARDLKIITPKREIHPRVYQLNEGQTLFFG-GL-ARLDYIKGG 273 (369)
T ss_dssp CEEEEEE-CS----TTCEEEECCSCCCCSS-GGGGSC-TTTHHHHSCSSCCCCEEEEECTTEEEEET-TT-EEEEEEESS
T ss_pred EeeEEEE-eC----CCeEEEeCCCcCcHHH-HHHHHh-HHHHHHHhcccccCceEEEEcCCceEEEC-CE-EEEEEccCC
Confidence 5543322 11 3589999999986532 112111 11222222 788999999998431 011 11 114445566
Q ss_pred CCcEEEEEeCCCCCChHHH
Q psy13475 247 EYQTRIILNKADQVKPEEL 265 (468)
Q Consensus 247 ~~~iiiVlNK~D~v~~~el 265 (468)
+.|+++|+||+|.+...++
T Consensus 274 ~~~~~~v~~k~d~~~~~~~ 292 (369)
T 3ec1_A 274 RRSFVCYMANELTVHRTKL 292 (369)
T ss_dssp SEEEEEEECTTSCEEEEEG
T ss_pred CceEEEEecCCcccccccH
Confidence 6799999999999854433
No 177
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.16 E-value=1.8e-10 Score=117.57 Aligned_cols=138 Identities=17% Similarity=0.249 Sum_probs=66.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+|+|++|+|||||+|+|++......+ ..|... .. .+.|..-.....
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~~~~~----~~~~~~--------~~--------------------~~~ti~~~~~~~ 86 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDLYPER----VIPGAA--------EK--------------------IERTVQIEASTV 86 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC-----------------------------------------------CEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCC----cccCCC--------cc--------------------cCCceeEEEEEE
Confidence 3899999999999999999987554211 111000 00 001110011111
Q ss_pred ecC-CCCCcceEEEeCCCCchhhhhhhhccchhH----HHHHhh-------------cccCEEEEEEcCCCCCCCHhHHH
Q psy13475 177 QLP-HPLLEKINIVEIPGILEIRKQVERQFPFND----ACQWFI-------------DRADIIFLVYDPSKLDVGPETEA 238 (468)
Q Consensus 177 ~~~-~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~----~~~~~~-------------~~aDlIllV~Da~~~~i~~e~~~ 238 (468)
.+. ......++++||||+.+.....++...+.. ....++ .++|++++++++....+......
T Consensus 87 ~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~ 166 (361)
T 2qag_A 87 EIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA 166 (361)
T ss_dssp C----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHH
T ss_pred EeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHH
Confidence 111 111236899999999654321111100111 001222 13467888888743356666667
Q ss_pred HHHHHhcCCCcEEEEEeCCCCCChHHHHH
Q psy13475 239 ILDQLKGREYQTRIILNKADQVKPEELMR 267 (468)
Q Consensus 239 ll~~l~~~~~~iiiVlNK~D~v~~~el~~ 267 (468)
+++.+. ...|+++|+||+|+.+..++..
T Consensus 167 ~~~~l~-~~~piIlV~NK~Dl~~~~ev~~ 194 (361)
T 2qag_A 167 FMKAIH-NKVNIVPVIAKADTLTLKERER 194 (361)
T ss_dssp HHHHTC-S-SCEEEEEECCSSSCHHHHHH
T ss_pred HHHHhc-cCCCEEEEEECCCCCCHHHHHH
Confidence 777764 4679999999999998766543
No 178
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.15 E-value=5.6e-11 Score=109.79 Aligned_cols=115 Identities=23% Similarity=0.245 Sum_probs=68.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.|+++|++|||||||+|.|+|..+..... ||. |..+ ....+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-----~t~--------------------------------~~~~--~~~~i 47 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESK-----STI--------------------------------GVEF--ATRSI 47 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC--------CCC--------------------------------SCEE--EEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC-----Ccc--------------------------------ceeE--EEEEE
Confidence 59999999999999999999987643211 111 0000 00011
Q ss_pred ecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEEE
Q psy13475 177 QLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRII 253 (468)
Q Consensus 177 ~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iiiV 253 (468)
.+ ......+.++||||.... ......+...+|++++|+|......-.....++..+. ....|+++|
T Consensus 48 ~~-~g~~~~~~i~Dt~g~~~~----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v 116 (199)
T 2f9l_A 48 QV-DGKTIKAQIWDTAGQERY----------RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 116 (199)
T ss_dssp EE-TTEEEEEEEEECSSGGGT----------TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEE
T ss_pred EE-CCEEEEEEEEECCCchhh----------hhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 11 111135778999996432 1223445678999999999875211111223333332 245799999
Q ss_pred EeCCCCCC
Q psy13475 254 LNKADQVK 261 (468)
Q Consensus 254 lNK~D~v~ 261 (468)
+||+|+..
T Consensus 117 ~nK~Dl~~ 124 (199)
T 2f9l_A 117 GNKSDLRH 124 (199)
T ss_dssp EECTTCGG
T ss_pred EECccccc
Confidence 99999864
No 179
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.14 E-value=2.2e-10 Score=126.57 Aligned_cols=68 Identities=24% Similarity=0.377 Sum_probs=55.3
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
..++||||||..+ |...+..++..+|.+|+|+|++. +...+...++..+...+.|+++|+||+|+...
T Consensus 82 ~~i~liDTPG~~d----------f~~~~~~~l~~aD~aIlVvDa~~-gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 82 HRINIIDTPGHVD----------FTIEVERSMRVLDGAVMVYCAVG-GVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eeEEEEeCCCccc----------hHHHHHHHHHHCCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 5799999999865 33445556788999999999987 56777777777777778899999999998753
No 180
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.14 E-value=4e-11 Score=134.98 Aligned_cols=66 Identities=26% Similarity=0.412 Sum_probs=54.2
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
..+.||||||+.+ |...+..++..+|.+++|+|+.. +.+.+...++..+...+.|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~d----------f~~~~~~~l~~aD~ailVvDa~~-g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVD----------FSSEVTAALRVTDGALVVVDTIE-GVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCS----------SCHHHHHHHHTCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchh----------hHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 5699999999865 44456666889999999999988 667777777776666678999999999986
No 181
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.12 E-value=1.7e-10 Score=119.98 Aligned_cols=132 Identities=16% Similarity=0.209 Sum_probs=74.9
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
++|+|++|+|||||||.|+|..+.+.... ... +..++..+..+.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~l~g~~~~-~~~-----------------------------------~~~~~~~i~~v~ 88 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTKFEGEPAT-HTQ-----------------------------------PGVQLQSNTYDL 88 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSCC--------CC-----------------------------------SSCEEEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHhCccccCCcCC-CCC-----------------------------------ccceEeeEEEEe
Confidence 89999999999999999999854321100 000 111222221111
Q ss_pred cCCCCCcceEEEeCCCCchhhhh----------hhhccchhHHHHHh---------hccc--C-EEEEEEcCCCCCCCHh
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQ----------VERQFPFNDACQWF---------IDRA--D-IIFLVYDPSKLDVGPE 235 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~----------~~r~~d~~~~~~~~---------~~~a--D-lIllV~Da~~~~i~~e 235 (468)
-.......++++||||+...... +... +....... ..++ | +++|++|+.. +++..
T Consensus 89 Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q--~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~-~l~~~ 165 (427)
T 2qag_B 89 QESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQ--FEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH-SLKSL 165 (427)
T ss_dssp EC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHH--HHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC----CHH
T ss_pred ecCccccccchhhhhhhhhccccchhhhHHHHHHHHH--HHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC-CCCHH
Confidence 11222246899999999753110 0111 11111111 1122 3 4666777765 67888
Q ss_pred HHHHHHHHhcCCCcEEEEEeCCCCCChHHHHHHh
Q psy13475 236 TEAILDQLKGREYQTRIILNKADQVKPEELMRVQ 269 (468)
Q Consensus 236 ~~~ll~~l~~~~~~iiiVlNK~D~v~~~el~~v~ 269 (468)
+.++++.|. ...|+++|+||+|.+.++++....
T Consensus 166 Dieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~ 198 (427)
T 2qag_B 166 DLVTMKKLD-SKVNIIPIIAKADAISKSELTKFK 198 (427)
T ss_dssp HHHHHHHTC-SCSEEEEEESCGGGSCHHHHHHHH
T ss_pred HHHHHHHHh-hCCCEEEEEcchhccchHHHHHHH
Confidence 888999887 578999999999999887765443
No 182
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.11 E-value=1.6e-10 Score=131.88 Aligned_cols=68 Identities=19% Similarity=0.154 Sum_probs=52.9
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc-EEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ-TRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~-iiiVlNK~D~v~~ 262 (468)
..++||||||+.+ |.......+..+|++|+|+|++. +...+..+.+..+...+.| +++|+||+|+.+.
T Consensus 359 ~kI~IIDTPGHed----------F~~~mi~gas~AD~aILVVDAtd-Gv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 359 RHYAHVDCPGHAD----------YVKNMITGAAQMDGAILVVAATD-GPMPQTREHILLGRQVGVPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp CEEEEEECCCHHH----------HHHHHHHTSCCCSEEEEEEETTT-CSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCC
T ss_pred EEEEEEECCChHH----------HHHHHHHHHhhCCEEEEEEcCCc-cCcHHHHHHHHHHHHcCCCeEEEEEeecccccc
Confidence 6799999999765 33445556889999999999987 5566676666666655677 7899999999863
No 183
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.11 E-value=9e-11 Score=125.63 Aligned_cols=121 Identities=15% Similarity=0.231 Sum_probs=70.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|.+|||||||+|+|++..+.. ...||+..-..-.. ..++. .
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~-----~~~~t~g~~~~~~~------------------------~~~~~----~ 88 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDP-----KESQTHGLNVVTKQ------------------------APNIK----G 88 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC----------------CCCEEEEE------------------------GGGSG----G
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-----CCCCccceEEEEec------------------------ccccc----c
Confidence 359999999999999999999987641 11122111000000 00000 0
Q ss_pred eecC-CCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC--CCcEEE
Q psy13475 176 LQLP-HPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR--EYQTRI 252 (468)
Q Consensus 176 ~~~~-~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~--~~~iii 252 (468)
+... ......+.++||||.... ......++..+|++++|+|++.. +....++..+... +.|+++
T Consensus 89 v~~~~~~~~~~~~i~Dt~G~e~~----------~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvil 155 (535)
T 3dpu_A 89 LENDDELKECLFHFWDFGGQEIM----------HASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIV 155 (535)
T ss_dssp GTTCSTTTTCEEEEECCCSCCTT----------TTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEE
T ss_pred eeecCCCceEEEEEEECCcHHHH----------HHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEE
Confidence 1111 112357999999995432 22234557889999999999763 4455566655543 479999
Q ss_pred EEeCCCCCCh
Q psy13475 253 ILNKADQVKP 262 (468)
Q Consensus 253 VlNK~D~v~~ 262 (468)
|+||+|+...
T Consensus 156 V~NK~Dl~~~ 165 (535)
T 3dpu_A 156 VMNKIDENPS 165 (535)
T ss_dssp EECCTTTCTT
T ss_pred EEECCCcccc
Confidence 9999998753
No 184
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.11 E-value=7e-11 Score=124.64 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=43.5
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCC-------CHhHHHHHHHHhcCCCc-EEEEEe
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDV-------GPETEAILDQLKGREYQ-TRIILN 255 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i-------~~e~~~ll~~l~~~~~~-iiiVlN 255 (468)
..++||||||+.+ |.......+..+|++++|+|++. +. ..++.+.+..+...+.| +++|+|
T Consensus 121 ~~~~iiDtPGh~~----------f~~~~~~~~~~aD~~ilVvDa~~-g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviN 189 (467)
T 1r5b_A 121 RRFSLLDAPGHKG----------YVTNMINGASQADIGVLVISARR-GEFEAGFERGGQTREHAVLARTQGINHLVVVIN 189 (467)
T ss_dssp EEEEECCCCC---------------------TTSCSEEEEEEECST-THHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred eEEEEEECCCcHH----------HHHHHHhhcccCCEEEEEEeCCc-CccccccCCCCcHHHHHHHHHHcCCCEEEEEEE
Confidence 5799999999854 33334445789999999999986 32 13455555555555666 999999
Q ss_pred CCCCCC
Q psy13475 256 KADQVK 261 (468)
Q Consensus 256 K~D~v~ 261 (468)
|+|+..
T Consensus 190 K~Dl~~ 195 (467)
T 1r5b_A 190 KMDEPS 195 (467)
T ss_dssp CTTSTT
T ss_pred CccCCC
Confidence 999953
No 185
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.11 E-value=1.4e-11 Score=126.17 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=75.1
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+++|.+|+|||||+|+|+|.....++.. + ..+.+++||++...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~----~-----------------------------~~~~~~gtT~~~~~ 206 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENV----I-----------------------------TTSHFPGTTLDLID 206 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSC----C-----------------------------EEECCC----CEEE
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccc----e-----------------------------ecCCCCCeecceEE
Confidence 34699999999999999999999742210000 0 00111455554433
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHh--hcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWF--IDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRI 252 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~--~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iii 252 (468)
. .+. ..+.++||||+.+... .....+ .+..... ..+.+.+++++++... +.......++.+.+...|+++
T Consensus 207 ~-~~~----~~~~liDtPG~~~~~~-~~~~l~-~~~l~~~~~~~~i~~~~~~l~~~~~-~~~g~l~~~d~l~~~~~~~~~ 278 (368)
T 3h2y_A 207 I-PLD----EESSLYDTPGIINHHQ-MAHYVG-KQSLKLITPTKEIKPMVFQLNEEQT-LFFSGLARFDYVSGGRRAFTC 278 (368)
T ss_dssp E-ESS----SSCEEEECCCBCCTTS-GGGGSC-HHHHHHHSCSSCCCCEEEEECTTEE-EEETTTEEEEEEESSSEEEEE
T ss_pred E-Eec----CCeEEEeCCCcCcHHH-HHHHhh-HHHHHHhccccccCceEEEEcCCCE-EEEcceEEEEEecCCCceEEE
Confidence 2 221 3489999999987532 222211 1222222 4678999999998431 000011114445566779999
Q ss_pred EEeCCCCCChHHHHH
Q psy13475 253 ILNKADQVKPEELMR 267 (468)
Q Consensus 253 VlNK~D~v~~~el~~ 267 (468)
|+||+|.+...++..
T Consensus 279 v~nk~d~~~~~~~~~ 293 (368)
T 3h2y_A 279 HFSNRLTIHRTKLEK 293 (368)
T ss_dssp EECTTSCEEEEEHHH
T ss_pred EecCccccccccHHH
Confidence 999999986544433
No 186
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.10 E-value=1.7e-10 Score=117.29 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=42.5
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCChH
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKPE 263 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~~ 263 (468)
..++||||||+..... ..+..+|++++|+|+... ++...+...+ .+.|+++|+||+|+....
T Consensus 172 ~~~iiiDTpGi~~~~~-------------~~~~~aD~vl~V~d~~~~---~~~~~l~~~~--~~~p~ivVlNK~Dl~~~~ 233 (355)
T 3p32_A 172 FDVILIETVGVGQSEV-------------AVANMVDTFVLLTLARTG---DQLQGIKKGV--LELADIVVVNKADGEHHK 233 (355)
T ss_dssp CCEEEEEECSCSSHHH-------------HHHTTCSEEEEEEESSTT---CTTTTCCTTS--GGGCSEEEEECCCGGGHH
T ss_pred CCEEEEeCCCCCcHHH-------------HHHHhCCEEEEEECCCCC---ccHHHHHHhH--hhcCCEEEEECCCCcChh
Confidence 6799999999875421 225889999999998652 2111111111 135899999999987554
Q ss_pred HH
Q psy13475 264 EL 265 (468)
Q Consensus 264 el 265 (468)
..
T Consensus 234 ~~ 235 (355)
T 3p32_A 234 EA 235 (355)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 187
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.07 E-value=2.8e-10 Score=116.13 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=29.9
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSK 229 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~ 229 (468)
..+.|+||||+..+... .++ +.......++++|++++|+|++.
T Consensus 66 ~~i~lvDtpGl~~~a~~-~~g--l~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASK-GEG--LGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHH-HGG--GTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccc-cch--HHHHHHHHHHhcCeEEEEEecCC
Confidence 46999999999865432 122 11223445789999999999975
No 188
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.07 E-value=3.1e-10 Score=122.04 Aligned_cols=67 Identities=22% Similarity=0.395 Sum_probs=59.3
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..|+||||||+.+ |...+...+.-+|.+++|+||.. ++..+.+.+++.+...+.|.++++||+|...
T Consensus 100 ~~iNlIDTPGHvD----------F~~Ev~raL~~~DgAvlVvda~~-GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 100 RVVNLLDTPGHQD----------FSEDTYRVLTAVDSALVVIDAAK-GVEAQTRKLMDVCRMRATPVMTFVNKMDREA 166 (548)
T ss_dssp EEEEEECCCCGGG----------CSHHHHHHHHSCSEEEEEEETTT-BSCHHHHHHHHHHHHTTCCEEEEEECTTSCC
T ss_pred EEEEEEeCCCcHH----------HHHHHHHHHHhcCceEEEeecCC-CcccccHHHHHHHHHhCCceEEEEecccchh
Confidence 6799999999987 44455555899999999999998 8999999999999999999999999999864
No 189
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.05 E-value=1.6e-10 Score=106.36 Aligned_cols=116 Identities=22% Similarity=0.250 Sum_probs=68.7
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+++|++|||||||+|.|+|..++... .||.. ..+ ....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-----~~t~~--------------------------------~~~--~~~~ 70 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLES-----KSTIG--------------------------------VEF--ATRS 70 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSC-----CCCCS--------------------------------EEE--EEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCC-----CCccc--------------------------------eEE--EEEE
Confidence 46999999999999999999998765321 12110 000 0011
Q ss_pred eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHh---cCCCcEEE
Q psy13475 176 LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLK---GREYQTRI 252 (468)
Q Consensus 176 ~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~---~~~~~iii 252 (468)
+.+ ......+.++||||..... .....+...+|.+++|+|......-+....++..+. ....|+++
T Consensus 71 i~~-~g~~~~~~i~Dt~g~~~~~----------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~ 139 (191)
T 1oix_A 71 IQV-DGKTIKAQIWDTAGLERYR----------AITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 139 (191)
T ss_dssp EEE-TTEEEEEEEEEECSCCSSS----------CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEE
T ss_pred EEE-CCEEEEEEEEECCCCcchh----------hhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 111 1111245679999975421 123344678899999999865211011222333332 34578999
Q ss_pred EEeCCCCCC
Q psy13475 253 ILNKADQVK 261 (468)
Q Consensus 253 VlNK~D~v~ 261 (468)
|+||+|+.+
T Consensus 140 v~nK~Dl~~ 148 (191)
T 1oix_A 140 VGNKSDLRH 148 (191)
T ss_dssp EEECGGGGG
T ss_pred EEECccccc
Confidence 999999853
No 190
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.04 E-value=7.4e-10 Score=108.67 Aligned_cols=141 Identities=15% Similarity=0.216 Sum_probs=80.9
Q ss_pred EEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEe
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGL 176 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~ 176 (468)
.++|+|++|+|||||||.|+|...+..+.. .+.|... +.+...+..+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i--------------------~~~g~~i------------~~~~~~~~i~~ 51 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASS--------------------WNREEKI------------PKTVEIKAIGH 51 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------------------------C------------CCCCSCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCcc--------------------ccCCccc------------CcceeeeeeEE
Confidence 599999999999999999999755321110 0001000 01111111111
Q ss_pred ecC-CCCCcceEEEeCCCCchhhh------hhhhcc--chhHHHH----------HhhcccCEEEEEEcCCCCCCCHhHH
Q psy13475 177 QLP-HPLLEKINIVEIPGILEIRK------QVERQF--PFNDACQ----------WFIDRADIIFLVYDPSKLDVGPETE 237 (468)
Q Consensus 177 ~~~-~~~l~~i~lIDTPGi~~~~~------~~~r~~--d~~~~~~----------~~~~~aDlIllV~Da~~~~i~~e~~ 237 (468)
... ......++++||||+..... .+.+.. ++..... -.+.+|.+.++++|...-++++.+.
T Consensus 52 v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~ 131 (270)
T 3sop_A 52 VIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL 131 (270)
T ss_dssp SCC----CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH
T ss_pred EeecCCCcCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH
Confidence 111 12234689999999864211 111110 0001000 1134578999999976447888888
Q ss_pred HHHHHHhcCCCcEEEEEeCCCCCChHHHHHHhh
Q psy13475 238 AILDQLKGREYQTRIILNKADQVKPEELMRVQG 270 (468)
Q Consensus 238 ~ll~~l~~~~~~iiiVlNK~D~v~~~el~~v~~ 270 (468)
.+++.+... .++++|+||+|.+..+++.....
T Consensus 132 ~~l~~L~~~-~~vI~Vi~K~D~lt~~e~~~~k~ 163 (270)
T 3sop_A 132 EFMKHLSKV-VNIIPVIAKADTMTLEEKSEFKQ 163 (270)
T ss_dssp HHHHHHHTT-SEEEEEETTGGGSCHHHHHHHHH
T ss_pred HHHHHHHhc-CcEEEEEeccccCCHHHHHHHHH
Confidence 999999887 89999999999998877655433
No 191
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=1.8e-09 Score=112.28 Aligned_cols=136 Identities=20% Similarity=0.275 Sum_probs=71.6
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+|+|++|+|||||||.|+|...+..+ .|. +... + ..+......+..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~~~~--~~~-~~~~---------------~---------------~~t~~~~~i~~v 80 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLYSPE--YPG-PSHR---------------I---------------KKTVQVEQSKVL 80 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCCCCC--CCS-CC-----------------------------------CCEEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCC--CCC-cccC---------------C---------------ccceeeeeEEEE
Confidence 899999999999999999998764211 000 0000 0 111111111221
Q ss_pred cC-CCCCcceEEEeCCCCchhhhh------h----hhccc--hh---HHHHHhhc--ccCEEEEEEcCCCCCCCHhHHHH
Q psy13475 178 LP-HPLLEKINIVEIPGILEIRKQ------V----ERQFP--FN---DACQWFID--RADIIFLVYDPSKLDVGPETEAI 239 (468)
Q Consensus 178 ~~-~~~l~~i~lIDTPGi~~~~~~------~----~r~~d--~~---~~~~~~~~--~aDlIllV~Da~~~~i~~e~~~l 239 (468)
.. ......++++||||+...... + ...++ +. .+++.++. ++++++++++++..++.+.+..+
T Consensus 81 ~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~ 160 (418)
T 2qag_C 81 IKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEF 160 (418)
T ss_dssp ------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHH
T ss_pred EecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHH
Confidence 11 122246899999999753210 0 00000 00 01122232 35567887777522567777778
Q ss_pred HHHHhcCCCcEEEEEeCCCCCChHHHHH
Q psy13475 240 LDQLKGREYQTRIILNKADQVKPEELMR 267 (468)
Q Consensus 240 l~~l~~~~~~iiiVlNK~D~v~~~el~~ 267 (468)
++.+.. +.++++|+||+|+....++..
T Consensus 161 lk~L~~-~v~iIlVinK~Dll~~~ev~~ 187 (418)
T 2qag_C 161 MKRLHE-KVNIIPLIAKADTLTPEECQQ 187 (418)
T ss_dssp HHHHTT-TSEEEEEEESTTSSCHHHHHH
T ss_pred HHHHhc-cCcEEEEEEcccCccHHHHHH
Confidence 888875 689999999999998766543
No 192
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.03 E-value=3.7e-10 Score=124.97 Aligned_cols=67 Identities=19% Similarity=0.336 Sum_probs=58.6
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..|+||||||+.+ |...+...+.-+|.+++|+|+.. ++..+.+.+++++...+.|.++++||+|...
T Consensus 85 ~~iNlIDTPGHvD----------F~~Ev~~aLr~~DgavlvVDave-GV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 85 YRVNVIDTPGHVD----------FTIEVERSLRVLDGAVVVFCGTS-GVEPQSETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp EEEEEECCCSCTT----------CHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred EEEEEEeCCCCcc----------cHHHHHHHHHHhCeEEEEEECCC-CCchhHHHHHHHHHHcCCCeEEEEccccccC
Confidence 5699999999987 44445555889999999999998 8999999999999888899999999999864
No 193
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.02 E-value=1.1e-10 Score=118.12 Aligned_cols=65 Identities=20% Similarity=0.198 Sum_probs=40.8
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCChH
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKPE 263 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~~ 263 (468)
.+++||||||+.+.... ....+|++++|+|++..+ ....+.... .+.|.++|+||+|+....
T Consensus 149 ~~i~liDTpG~~~~~~~-------------~~~~aD~vl~Vvd~~~~~---~~~~l~~~~--~~~p~ivv~NK~Dl~~~~ 210 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE-------------VARMVDCFISLQIAGGGD---DLQGIKKGL--MEVADLIVINKDDGDNHT 210 (341)
T ss_dssp CSEEEEEEECCTTHHHH-------------HHTTCSEEEEEECC---------CCCCHHH--HHHCSEEEECCCCTTCHH
T ss_pred CCEEEEeCCCccchHHH-------------HHHhCCEEEEEEeCCccH---HHHHHHHhh--hcccCEEEEECCCCCChH
Confidence 67999999999864321 247899999999996521 110000011 135789999999998754
Q ss_pred HHH
Q psy13475 264 ELM 266 (468)
Q Consensus 264 el~ 266 (468)
+..
T Consensus 211 ~~~ 213 (341)
T 2p67_A 211 NVA 213 (341)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 194
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.01 E-value=1e-09 Score=120.57 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=83.0
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeE
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~ 174 (468)
...|+|+|+.|+|||||+|+|++..... ...| .+..|.. ..|+.-....+ +-+......
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~--~~~G-----------------~V~~g~~-~~d~~~~e~~~-giti~~~~~ 67 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAK--ERRG-----------------RVEEGTT-TTDYTPEAKLH-RTTVRTGVA 67 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSS--SSCC-----------------CGGGTCC-SSCCSHHHHHT-TSCCSCEEE
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCC--Cccc-----------------eecCCcc-cccCCHHHHhc-CCeEEecce
Confidence 3469999999999999999999753321 0110 0011111 11111000000 111111111
Q ss_pred EeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEE
Q psy13475 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIIL 254 (468)
Q Consensus 175 ~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVl 254 (468)
.... . ...++|+||||..+ |...+..++..+|.+++|+|+.. ++......++..+...+.|+++|+
T Consensus 68 ~~~~-~--~~~~nliDTpG~~~----------f~~~~~~~l~~ad~~ilVvD~~~-g~~~qt~~~~~~~~~~~ip~ilv~ 133 (665)
T 2dy1_A 68 PLLF-R--GHRVFLLDAPGYGD----------FVGEIRGALEAADAALVAVSAEA-GVQVGTERAWTVAERLGLPRMVVV 133 (665)
T ss_dssp EEEE-T--TEEEEEEECCCSGG----------GHHHHHHHHHHCSEEEEEEETTT-CSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEee-C--CEEEEEEeCCCccc----------hHHHHHHHHhhcCcEEEEEcCCc-ccchhHHHHHHHHHHccCCEEEEe
Confidence 1111 1 25689999999865 33445566789999999999987 678888888888877789999999
Q ss_pred eCCCCC
Q psy13475 255 NKADQV 260 (468)
Q Consensus 255 NK~D~v 260 (468)
||+|+.
T Consensus 134 NKiD~~ 139 (665)
T 2dy1_A 134 TKLDKG 139 (665)
T ss_dssp ECGGGC
T ss_pred cCCchh
Confidence 999987
No 195
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.99 E-value=1.5e-10 Score=126.59 Aligned_cols=67 Identities=24% Similarity=0.351 Sum_probs=58.4
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..|+||||||+.+ |...+...+.-+|.+++|+|+.. ++..+.+.+++.+...+.|.++++||+|...
T Consensus 67 ~~iNlIDTPGH~D----------F~~Ev~raL~~~DgavlVVDa~~-GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 67 TKVNIIDTPGHMD----------FLAEVYRSLSVLDGAILLISAKD-GVQAQTRILFHALRKMGIPTIFFINKIDQNG 133 (638)
T ss_dssp CBCCCEECCCSSS----------THHHHHHHHTTCSEEECCEESSC-TTCSHHHHHHHHHHHHTCSCEECCEECCSSS
T ss_pred EEEEEEECCCcHH----------HHHHHHHHHHHhCEEEEEEeCCC-CCcHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence 6799999999987 44445555889999999999998 8899999999999888899999999999864
No 196
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.97 E-value=7.8e-10 Score=111.85 Aligned_cols=61 Identities=23% Similarity=0.235 Sum_probs=37.5
Q ss_pred CcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 183 LEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 183 l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..+++||||||+..+... ..+.+|++++|+|+... ++...+...+. ..+.++|+||+|+..
T Consensus 147 ~~~~iliDT~Gi~~~~~~-------------v~~~~d~vl~v~d~~~~---~~~~~i~~~i~--~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 147 GFDVILVETVGVGQSETA-------------VADLTDFFLVLMLPGAG---DELQGIKKGIF--ELADMIAVNKADDGD 207 (337)
T ss_dssp TCCEEEEEECSSSSCHHH-------------HHTTSSEEEEEECSCC---------CCTTHH--HHCSEEEEECCSTTC
T ss_pred CCCEEEEECCCCCcchhh-------------HHhhCCEEEEEEcCCCc---ccHHHHHHHHh--ccccEEEEEchhccC
Confidence 368999999999864221 14689999999998642 11110100000 135688889999764
No 197
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.97 E-value=7.1e-09 Score=104.31 Aligned_cols=116 Identities=20% Similarity=0.326 Sum_probs=70.7
Q ss_pred EEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEEee
Q psy13475 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRGLQ 177 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~~~ 177 (468)
|+++|..|||||||++.+.+...+...... .||. |-.+ ..+
T Consensus 2 IvllGdsgvGKTSLl~~~~~~~~~~~~~~~--~~Ti--------------------------------g~~~----~~v- 42 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYL--ESTS--------------------------------NPSL----EHF- 42 (331)
T ss_dssp EEEECSTTSSTTHHHHHHHSCCCSGGGTTC--CCCC--------------------------------SCCC----EEE-
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCcccee--cCee--------------------------------eeee----EEE-
Confidence 789999999999999998876432111111 1111 1111 111
Q ss_pred cCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHH---HHHHHHh--cCCCcEEE
Q psy13475 178 LPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETE---AILDQLK--GREYQTRI 252 (468)
Q Consensus 178 ~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~---~ll~~l~--~~~~~iii 252 (468)
. ....+.||||||....... . + ....+...++++++|+|.+.. ...... .++..+. ..+.|+++
T Consensus 43 -~--~~v~LqIWDTAGQErf~~~---~--l--~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipill 111 (331)
T 3r7w_B 43 -S--TLIDLAVMELPGQLNYFEP---S--Y--DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEV 111 (331)
T ss_dssp -C--SSSCEEEEECCSCSSSCCC---S--H--HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred -c--cEEEEEEEECCCchhccch---h--h--hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEE
Confidence 1 1257999999997542100 0 0 234567899999999999873 223222 2333332 23579999
Q ss_pred EEeCCCCCChH
Q psy13475 253 ILNKADQVKPE 263 (468)
Q Consensus 253 VlNK~D~v~~~ 263 (468)
|.||+|+.+.+
T Consensus 112 vgNK~DL~~~~ 122 (331)
T 3r7w_B 112 LIHKVDGLSED 122 (331)
T ss_dssp ECCCCCSSCSH
T ss_pred EEECcccCchh
Confidence 99999998654
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.94 E-value=1.7e-09 Score=110.61 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=30.3
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSK 229 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~ 229 (468)
..+.|+||||+..+... .++ +.......+..+|++++|+|++.
T Consensus 69 ~~i~lvDtpGl~~~a~~-~~~--lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 69 THVEFVDIAGLVKGAHK-GEG--LGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CEEEEEECCSCCCCCCS-SSC--TTHHHHHHHHTCSEEEEEEECCC
T ss_pred ceEEEEECCCccccccc-cch--HHHHHHHHHHhCCEEEEEEECCC
Confidence 46999999999865322 122 22334455789999999999975
No 199
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.91 E-value=6e-09 Score=108.28 Aligned_cols=121 Identities=21% Similarity=0.302 Sum_probs=70.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceeeeEE
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLRG 175 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i~~ 175 (468)
..|+|+|++|||||||||+|++....+ .++|| +++....+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i--------------------------------~~~~f--------tTl~p~~G 197 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKI--------------------------------APYPF--------TTLSPNLG 197 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEE--------------------------------CCCTT--------CSSCCEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccc--------------------------------cCccc--------ceecceee
Confidence 459999999999999999999864321 11111 11111111
Q ss_pred -eecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc-----CCCc
Q psy13475 176 -LQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG-----REYQ 249 (468)
Q Consensus 176 -~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~-----~~~~ 249 (468)
+.... ...++++||||+.+.... ... +.......++++|.+++++|.+. ..-.+.....+.+.. ...|
T Consensus 198 ~V~~~~--~~~~~l~DtpGli~~a~~-~~~--L~~~fl~~~era~~lL~vvDls~-~~~~~ls~g~~el~~la~aL~~~P 271 (416)
T 1udx_A 198 VVEVSE--EERFTLADIPGIIEGASE-GKG--LGLEFLRHIARTRVLLYVLDAAD-EPLKTLETLRKEVGAYDPALLRRP 271 (416)
T ss_dssp EEECSS--SCEEEEEECCCCCCCGGG-SCC--SCHHHHHHHTSSSEEEEEEETTS-CHHHHHHHHHHHHHHHCHHHHHSC
T ss_pred EEEecC--cceEEEEeccccccchhh-hhh--hhHHHHHHHHHHHhhhEEeCCcc-CCHHHHHHHHHHHHHHhHHhhcCC
Confidence 22221 256899999999653221 111 11112234678999999999861 111122222222211 1368
Q ss_pred EEEEEeCCCCCCh
Q psy13475 250 TRIILNKADQVKP 262 (468)
Q Consensus 250 iiiVlNK~D~v~~ 262 (468)
.++|+||+|....
T Consensus 272 ~ILVlNKlDl~~~ 284 (416)
T 1udx_A 272 SLVALNKVDLLEE 284 (416)
T ss_dssp EEEEEECCTTSCH
T ss_pred EEEEEECCChhhH
Confidence 9999999999866
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.89 E-value=1.7e-09 Score=103.91 Aligned_cols=75 Identities=20% Similarity=0.148 Sum_probs=44.7
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhH-HHHH----HHHhcCCCcEEEEEeCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPET-EAIL----DQLKGREYQTRIILNKAD 258 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~-~~ll----~~l~~~~~~iiiVlNK~D 258 (468)
..++||||||..+..... . +.......+.. +++++++|+... .+... .... ......+.|+++|+||+|
T Consensus 109 ~d~iiiDtpG~~~~~~~~-~---l~~~~~~~~~~-~~iv~vvD~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D 182 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFH-E---FGVRLMENLPY-PLVVYISDPEIL-KKPNDYCFVRFFALLIDLRLGATTIPALNKVD 182 (262)
T ss_dssp CSEEEEECCSSHHHHHHS-H---HHHHHHHTSSS-CEEEEEECGGGC-CSHHHHHHHHHHHHHHHHHHTSCEEEEECCGG
T ss_pred CCEEEEeCCCccchhhhh-h---hHHHHHHHHhh-ceEEeccchhhh-cCHHHHHHHHHHHHHHhcccCCCeEEEEeccc
Confidence 479999999987643211 0 11112233466 999999998652 23222 2111 222233579999999999
Q ss_pred CCChHH
Q psy13475 259 QVKPEE 264 (468)
Q Consensus 259 ~v~~~e 264 (468)
+....+
T Consensus 183 ~~~~~~ 188 (262)
T 1yrb_A 183 LLSEEE 188 (262)
T ss_dssp GCCHHH
T ss_pred cccccc
Confidence 986543
No 201
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.86 E-value=1.7e-09 Score=104.61 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=31.5
Q ss_pred ccCEEEEEEcCCCC--CCCHhHHHHHHHH----hcCCCcEEEEEeCCCCCChHHH
Q psy13475 217 RADIIFLVYDPSKL--DVGPETEAILDQL----KGREYQTRIILNKADQVKPEEL 265 (468)
Q Consensus 217 ~aDlIllV~Da~~~--~i~~e~~~ll~~l----~~~~~~iiiVlNK~D~v~~~el 265 (468)
.||++++|+|++.. ..-+....++..+ ...+.|+++|+||+|+.+...+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v 216 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI 216 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH
Confidence 69999999999762 1112222333333 2346899999999998765443
No 202
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.86 E-value=1e-08 Score=106.42 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=72.3
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccC-CCCCCCCceeEEEecCCCCccccCcccccCccccccccccccceee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLR-TGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDR 172 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~-~G~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~ 172 (468)
..+.|+|+|++|+|||||||.|+|...+..+.. .+.. ++++.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~------------------------------------~~t~~- 110 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV------------------------------------EVTME- 110 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------------------------------------CC-
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe------------------------------------eccee-
Confidence 456899999999999999999999643211100 0000 11111
Q ss_pred eEEeecCCCCCcceEEEeCCCCchhhhhhhhccchhHHHHH-hhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEE
Q psy13475 173 LRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQW-FIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTR 251 (468)
Q Consensus 173 i~~~~~~~~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~-~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ii 251 (468)
+.....+...+++++|+||+.......++. ... .+...|.+++ ++... .......+...+...+.|++
T Consensus 111 --~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~------L~~~~L~~~~~~~~-lS~G~--~~kqrv~la~aL~~~~~p~~ 179 (413)
T 1tq4_A 111 --RHPYKHPNIPNVVFWDLPGIGSTNFPPDTY------LEKMKFYEYDFFII-ISATR--FKKNDIDIAKAISMMKKEFY 179 (413)
T ss_dssp --CEEEECSSCTTEEEEECCCGGGSSCCHHHH------HHHTTGGGCSEEEE-EESSC--CCHHHHHHHHHHHHTTCEEE
T ss_pred --EEeccccccCCeeehHhhcccchHHHHHHH------HHHcCCCccCCeEE-eCCCC--ccHHHHHHHHHHHhcCCCeE
Confidence 111112233579999999997532212221 111 1445566665 77654 25566677888887789999
Q ss_pred EEEeCCCCC
Q psy13475 252 IILNKADQV 260 (468)
Q Consensus 252 iVlNK~D~v 260 (468)
+|+||.|.+
T Consensus 180 lV~tkpdll 188 (413)
T 1tq4_A 180 FVRTKVDSD 188 (413)
T ss_dssp EEECCHHHH
T ss_pred EEEecCccc
Confidence 999999875
No 203
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.85 E-value=2.4e-09 Score=110.34 Aligned_cols=105 Identities=21% Similarity=0.162 Sum_probs=47.8
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcccccccCCCCCCCC-ceeEEEecCCCCccccCcccccCccccccccccccceeee
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSP-AYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRL 173 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G~~ptT-~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~~i 173 (468)
...|+++|.+|+|||||+|+|.|.++ .++.. |+| -.++. |.....|..+..+. +.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~----p~tTi~p~~-----------g~v~v~~~r~~~l~---~~----- 77 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAENF----PFCTIDPNE-----------SRVPVPDERFDFLC---QY----- 77 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC------------------CCSE-----------EEEECCCHHHHHHH---HH-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-cccCC----CccccCcee-----------EEEEECCccceeec---cc-----
Confidence 34599999999999999999999865 22222 211 11110 00000000000000 00
Q ss_pred EEeecCC-CCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCC
Q psy13475 174 RGLQLPH-PLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSK 229 (468)
Q Consensus 174 ~~~~~~~-~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~ 229 (468)
..+. .....+.|+||||+..+... .++ +.......+.++|+|++|+|+..
T Consensus 78 ---~~p~~~~~~~i~lvDtpGl~~~as~-~~g--lg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 78 ---HKPASKIPAFLNVVDIAGLVKGAHN-GQG--LGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ---HCCSEEECCEEEEEECCC--------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ---cCcccccccccEEEECCCcccccch-hhH--HHHHHHHHHHhcCeEEEEEecCC
Confidence 0000 01145999999999875432 222 22345566889999999999864
No 204
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.82 E-value=1.8e-08 Score=100.11 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=33.7
Q ss_pred ccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCChHHH
Q psy13475 217 RADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKPEEL 265 (468)
Q Consensus 217 ~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~~el 265 (468)
++++++++.+++..++.....+++..+.. ..++++|+||+|+....++
T Consensus 126 ra~~ll~ldePt~~~Ld~~~~~~l~~l~~-~~~iilV~~K~Dl~~~~e~ 173 (301)
T 2qnr_A 126 RVHCCFYFISPFGHGLKPLDVAFMKAIHN-KVNIVPVIAKADTLTLKER 173 (301)
T ss_dssp CCCEEEEEECSSSSSCCHHHHHHHHHHTT-TSCEEEEECCGGGSCHHHH
T ss_pred hhhheeeeecCcccCCCHHHHHHHHHHHh-cCCEEEEEEeCCCCCHHHH
Confidence 45667777776542356666667777654 4689999999999876554
No 205
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.81 E-value=4.8e-09 Score=111.48 Aligned_cols=71 Identities=21% Similarity=0.206 Sum_probs=44.3
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcE-EEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQT-RIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~i-iiVlNK~D~v~~ 262 (468)
..++||||||........... +..... + -.+|.+++|+|+.. +.. ....+..+... .|+ .+|+||+|....
T Consensus 184 ~DvvIIDTpG~~~~~~~l~~e--l~~~~~-~-i~pd~vllVvDa~~-g~~--~~~~a~~~~~~-~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDSLFEE--MLQVAN-A-IQPDNIVYVMDASI-GQA--CEAQAKAFKDK-VDVASVIVTKLDGHAK 255 (504)
T ss_dssp CCEEEEEECCCCTTCHHHHHH--HHHHHH-H-HCCSEEEEEEETTC-CTT--HHHHHHHHHHH-HCCCCEEEECTTSCCC
T ss_pred CcEEEEeCCCCcccchhHHHH--HHHHHh-h-hcCceEEEEEeccc-ccc--HHHHHHHHHhh-cCceEEEEeCCccccc
Confidence 579999999998643222111 111222 2 27899999999987 322 33444444432 464 899999998743
No 206
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.75 E-value=8.2e-09 Score=111.51 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.2
Q ss_pred CEEEEeccCCCChhhHHHHHhCCccc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYS 121 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~ 121 (468)
..|+|+|.||+|||||||+|+|.+..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~ 64 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKG 64 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSC
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCc
Confidence 35999999999999999999998753
No 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.69 E-value=1.7e-08 Score=104.00 Aligned_cols=106 Identities=14% Similarity=0.143 Sum_probs=58.6
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcccccccCCC--CCCCCceeEEEecCCCCccccCcccccCcccccccccccccee
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTG--AEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLD 171 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~~vs~~~G--~~ptT~~~~~i~~g~~~~~i~G~~l~~D~~f~~L~~fg~tt~~ 171 (468)
....|+|+|++|||||||+|+|+|...+.++...+ ..|+...+.+ +|. .+..+..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v----------~~~------r~~~l~~------- 75 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAV----------PDE------RFDWLCE------- 75 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEE----------CCH------HHHHHHH-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeee----------CCc------chhhhhh-------
Confidence 34469999999999999999999987644333311 0111111000 000 0000000
Q ss_pred eeEEeecCC-CCCcceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCC
Q psy13475 172 RLRGLQLPH-PLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSK 229 (468)
Q Consensus 172 ~i~~~~~~~-~~l~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~ 229 (468)
..-+. .....+.++||||+..+... .++ +.......+..+|.+++|+|+..
T Consensus 76 ----~~~~~~~v~~~i~lvD~pGl~~~~s~-~e~--L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 76 ----AYKPKSRVPAFLTVFDIAGLTKGAST-GVG--LGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp ----HHCCSEEECEEEEEECTGGGCCCCCS-SSS--SCHHHHHHHTTCSEEEEEEECCC
T ss_pred ----hcccccccCcceEEEeccccccCCcH-HHH--HHHHHHHHHHHHHHHHHHHhccc
Confidence 00000 00135899999999764322 222 22334556789999999999864
No 208
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.69 E-value=6.5e-08 Score=105.19 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=48.0
Q ss_pred CcceEEEeCCCCchhhhh-hhh--ccchhHHHHHhhccc-CEEEEEEcCCCCCC-CHhHHHHHHHHhcCCCcEEEEEeCC
Q psy13475 183 LEKINIVEIPGILEIRKQ-VER--QFPFNDACQWFIDRA-DIIFLVYDPSKLDV-GPETEAILDQLKGREYQTRIILNKA 257 (468)
Q Consensus 183 l~~i~lIDTPGi~~~~~~-~~r--~~d~~~~~~~~~~~a-DlIllV~Da~~~~i-~~e~~~ll~~l~~~~~~iiiVlNK~ 257 (468)
...++|+|.||+...... ++. ...+.+.+..++.+. .++++++++.. ++ +.....++..+...+.++++|+||.
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~-d~a~~~~l~la~~v~~~g~rtI~VlTK~ 224 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNV-DIATTEALSMAQEVDPEGDRTIGILTKP 224 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSS-CTTTCHHHHHHHHHCSSCCSEEEEEECG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccc-hhccHHHHHHHHHHhhcCCceEEEecch
Confidence 367999999998753211 110 001345566655544 55666666543 43 3445677888877788999999999
Q ss_pred CCCChH
Q psy13475 258 DQVKPE 263 (468)
Q Consensus 258 D~v~~~ 263 (468)
|+++..
T Consensus 225 Dlv~~g 230 (608)
T 3szr_A 225 DLVDKG 230 (608)
T ss_dssp GGSSSS
T ss_pred hhcCcc
Confidence 998543
No 209
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.60 E-value=2.8e-08 Score=98.00 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=23.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCccccccc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYSQNSL 125 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~~vs~ 125 (468)
.|+++|.||+|||||||+|+|.+.+.++.
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~~~~~~~ 150 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKNIAKTGD 150 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCC----
T ss_pred eEEEEecCCCchHHHHHHHhcCceeecCC
Confidence 59999999999999999999988765443
No 210
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.56 E-value=5.2e-08 Score=90.95 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.8
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.+.|+++|.+|+|||||+|+|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.50 E-value=3.2e-07 Score=95.78 Aligned_cols=72 Identities=19% Similarity=0.146 Sum_probs=47.0
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
..++||||||........-.. +.. . ..+..+|.+++|+|+.. ..+.......+.+......+|+||+|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~e--l~~-i-~~~~~pd~vlLVvDA~~---gq~a~~~a~~f~~~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEE--MKQ-I-SNVIHPHEVILVIDGTI---GQQAYNQALAFKEATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHH--HHH-H-HHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHSCTTEEEEEECCSSCSS
T ss_pred CCEEEEECCCcccchHHHHHH--HHH-H-HHhhcCceEEEEEeCCC---chhHHHHHHHHHhhCCCeEEEEECCCCccc
Confidence 579999999987543221111 111 1 12346899999999976 344445556666555677899999998754
No 212
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.49 E-value=2e-07 Score=97.25 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=43.6
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC-CcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE-YQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~-~~iiiVlNK~D~v~ 261 (468)
.+++||||||........... +. ....+..+|.+++|+|+.. + .+....+..+...- ....+|+||+|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~--l~--~i~~~~~~d~vllVvda~~-g--~~~~~~~~~~~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEE--MK--QIKEITNPDEIILVIDGTI-G--QQAGIQAKAFKEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHH--HH--HTTSSSCCSEEEEEEEGGG-G--GGHHHHHHHHHTTSCSCEEEEEECSSSCS
T ss_pred CCEEEEcCCCCccccHHHHHH--HH--HHHHHhcCcceeEEeeccc-c--HHHHHHHHHHhhcccCCeEEEEeCCCCcc
Confidence 679999999988642221111 10 0111337899999999975 2 23334445554432 23889999999864
No 213
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.36 E-value=5.8e-07 Score=94.04 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.8
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
-.+|+|+|++++|||||+|+|+|.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 346999999999999999999985
No 214
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.31 E-value=2.5e-07 Score=90.12 Aligned_cols=27 Identities=41% Similarity=0.425 Sum_probs=23.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcccc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEYSQ 122 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~~~ 122 (468)
..|+++|.+|+|||||||+|+|.....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~ 126 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS 126 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC--
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc
Confidence 479999999999999999999987753
No 215
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.24 E-value=1.1e-06 Score=91.60 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=44.5
Q ss_pred cceEEEeCCCCch--hhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILE--IRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~--~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||... .....-.. +.... . +-..|.+++|+|+.. ..+.....+.+.+.-.+..+|+||+|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~e--l~~i~-~-~~~pd~vlLVlDa~~---gq~a~~~a~~f~~~~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEE--MKEMY-D-VLKPDDVILVIDASI---GQKAYDLASRFHQASPIGSVIITKMDGTA 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHH--HHHHH-H-HHCCSEEEEEEEGGG---GGGGHHHHHHHHHHCSSEEEEEECGGGCS
T ss_pred CCEEEEECCCCccccCCHHHHHH--HHHHH-H-hhCCcceEEEEeCcc---chHHHHHHHHHhcccCCcEEEEecccccc
Confidence 6799999999754 22221111 11111 1 225699999999975 34444555666544467889999999764
No 216
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.05 E-value=1e-05 Score=80.19 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=43.5
Q ss_pred cceEEEeCCCCch--hhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc-EEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILE--IRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ-TRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~--~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~-iiiVlNK~D~v 260 (468)
..++||||||... ....+-.. +.. . ..+..+|.+++|+|+.. ..+....++.+... .+ ..+|+||+|..
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~e--l~~-i-~~~~~~d~vllVvda~~---g~~~~~~~~~~~~~-~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEE--MKN-I-YEAIKPDEVTLVIDASI---GQKAYDLASKFNQA-SKIGTIIITKMDGT 252 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHH--HHH-H-HHHHCCSEEEEEEEGGG---GGGHHHHHHHHHHT-CTTEEEEEECGGGC
T ss_pred CCEEEEeCCCCcccccHHHHHHH--HHH-H-HHHhcCCEEEEEeeCCc---hHHHHHHHHHHHhh-CCCCEEEEeCCCCC
Confidence 5799999999886 32221110 101 1 12347899999999864 23444445555443 45 78899999976
Q ss_pred C
Q psy13475 261 K 261 (468)
Q Consensus 261 ~ 261 (468)
.
T Consensus 253 ~ 253 (297)
T 1j8m_F 253 A 253 (297)
T ss_dssp T
T ss_pred c
Confidence 4
No 217
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.92 E-value=4.5e-06 Score=88.14 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=42.6
Q ss_pred cceEEEeCCCCchhhhh-hhhccchhHHHHHhh-cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQ-VERQFPFNDACQWFI-DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~~-~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
..++||||+|....... ....-.+..+++.+. ...+-+++++|+.. +......++.+...-....+|+||.|..
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt---Gq~al~~ak~f~~~~~itgvIlTKLD~t 451 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST---GQNAVSQAKLFHEAVGLTGITLTKLDGT 451 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG---THHHHHHHHHHHHHTCCSEEEEECGGGC
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc---cHHHHHHHHHHHhhcCCCEEEEEcCCCc
Confidence 46899999999754322 211101222233221 23578999999865 3444444555543333567899999964
No 218
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.91 E-value=1.2e-05 Score=74.92 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=21.9
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.+.|+|+|.+|||||||+|.|++..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998763
No 219
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.87 E-value=7.2e-05 Score=74.87 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=41.3
Q ss_pred cceEEEeCCCCchhhhh-hhhccchhHHHHHh-hcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQ-VERQFPFNDACQWF-IDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~-~~r~~d~~~~~~~~-~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||....... ++....+..++... ...+|.+++|+|+.. ..+...-++.+...-...-+|+||+|...
T Consensus 192 yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~---~~~~l~~~~~~~~~~~i~GvVltk~d~~~ 268 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT---GQNGVIQAEEFSKVADVSGIILTKMDSTS 268 (320)
T ss_dssp CSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG---THHHHHHHHHHTTTSCCCEEEEECGGGCS
T ss_pred CCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC---cHHHHHHHHHHhhcCCCcEEEEeCCCCCC
Confidence 67999999998865322 11110011111111 235799999999874 23222223334332234458999999653
No 220
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.84 E-value=3.7e-05 Score=80.15 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=41.3
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCc-EEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ-TRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~-iiiVlNK~D~v~ 261 (468)
..++||||||........... + ..+ ..+..+|.+++|+|+.. + ......+..+.. ..+ .-+|+||+|...
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~--L-~~~-~~~~~p~~vllVvda~~-g--~~~~~~~~~f~~-~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDE--I-KQV-HASINPVETLFVVDAMT-G--QDAANTAKAFNE-ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHH--H-HHH-HHHSCCSEEEEEEETTB-C--TTHHHHHHHHHH-HSCCCCEEEECTTSSS
T ss_pred CCEEEEECCCcccccHHHHHH--H-HHH-HHhhcCcceeEEeecch-h--HHHHHHHHHHhc-cCCCeEEEEecCCCCc
Confidence 579999999987542221111 1 011 22447899999999975 2 233334444432 133 457999999753
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.81 E-value=1.4e-05 Score=80.34 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=43.0
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
..+.++||+|........-+. +...++. -..|-.++++|+.. ..+....+..+........+++||.|..
T Consensus 212 ~d~vliDtaG~~~~~~~l~~e--L~~i~ra--l~~de~llvLDa~t---~~~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDE--MKKIARV--TKPNLVIFVGDALA---GNAIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHH--HHHHHHH--HCCSEEEEEEEGGG---TTHHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred chhhHHhhccchhHHHHHHHH--HHHHHHH--hcCCCCEEEEecHH---HHHHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 457899999986533322111 2222222 24788999999865 3455555555554334568899999964
No 222
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.76 E-value=1.6e-05 Score=79.11 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=44.7
Q ss_pred cceEEEeCCCCchhhhh----hhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCC
Q psy13475 184 EKINIVEIPGILEIRKQ----VERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQ 259 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~----~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~ 259 (468)
..+.++||+|....... +++. -...++..+...+.+++++|+.. ..+....+..+.......++++||.|.
T Consensus 185 ~d~~llDt~G~~~~~~~~~~eLs~~--r~~iaRal~~~P~~~lLvLDa~t---~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHNLMEELKKV--KRAIAKADPEEPKEVWLVLDAVT---GQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHH--HHHHHHHCTTCCSEEEEEEETTB---CTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred CCEEEecCCCCCCchHHHHHHHHHH--HHHHHHhhcCCCCeEEEEEcHHH---HHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 35789999998643322 2211 12234455667898999999865 344445555554332457889999986
Q ss_pred C
Q psy13475 260 V 260 (468)
Q Consensus 260 v 260 (468)
.
T Consensus 260 ~ 260 (304)
T 1rj9_A 260 T 260 (304)
T ss_dssp S
T ss_pred c
Confidence 5
No 223
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.67 E-value=0.0003 Score=69.86 Aligned_cols=71 Identities=23% Similarity=0.317 Sum_probs=39.8
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhh-----cccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFI-----DRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKAD 258 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~-----~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D 258 (468)
..++|+||||.......+-.. + ......+ ..+|.+++|+|+.. ..+....++.+.....-.-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~e--L-~~l~~~i~~~i~~~p~~vllVlda~t---~~~~l~~a~~~~~~~~i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEE--L-RKVHRVVKKKIPDAPHETLLVIDATT---GQNGLVQAKIFKEAVNVTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHH--H-HHHHHHGGGTCTTCCSEEEEEEEGGG---HHHHHHHHHHHHHHSCCCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHH--H-HHHHHHHhhccCCCCcEEEEEEECCC---CHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 569999999975433321111 1 1122222 35789999999863 22222223333332334567899999
Q ss_pred CC
Q psy13475 259 QV 260 (468)
Q Consensus 259 ~v 260 (468)
..
T Consensus 261 ~~ 262 (306)
T 1vma_A 261 GT 262 (306)
T ss_dssp GC
T ss_pred Cc
Confidence 65
No 224
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.45 E-value=5.1e-05 Score=75.10 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=39.2
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhc--ccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFID--RADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~--~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++|+||||........ +.+ ....+. ..|.+++|+|++. + ..+..++.+.+... ...-+|+||.|...
T Consensus 183 ~dlvIiDT~G~~~~~~~~-----~~e-l~~~l~~~~~~~~~lVl~at~-~-~~~~~~~~~~~~~l-~~~giVltk~D~~~ 253 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQY-----IDE-LKETIPFESSIQSFLVLSATA-K-YEDMKHIVKRFSSV-PVNQYIFTKIDETT 253 (296)
T ss_dssp SSEEEEECCCCCTTSHHH-----HHH-HHHHSCCCTTEEEEEEEETTB-C-HHHHHHHTTTTSSS-CCCEEEEECTTTCS
T ss_pred CCEEEEeCCCCChhhHHH-----HHH-HHHHHhhcCCCeEEEEEECCC-C-HHHHHHHHHHHhcC-CCCEEEEeCCCccc
Confidence 579999999987542211 111 112222 3677899998865 1 12333333333322 24567889999764
No 225
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.35 E-value=0.0017 Score=59.19 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=46.3
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC-----CCcEEEEEeCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR-----EYQTRIILNKAD 258 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~-----~~~iiiVlNK~D 258 (468)
..++||||||.... .+...+..+|.+++++.++..+ .....+++.+... ..++.+|+|++|
T Consensus 76 yD~viiD~~~~~~~------------~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~ 141 (206)
T 4dzz_A 76 YDFAIVDGAGSLSV------------ITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKI 141 (206)
T ss_dssp SSEEEEECCSSSSH------------HHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBC
T ss_pred CCEEEEECCCCCCH------------HHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 67999999986632 2344467799999999998743 5566677777644 247799999999
Q ss_pred CC
Q psy13475 259 QV 260 (468)
Q Consensus 259 ~v 260 (468)
..
T Consensus 142 ~~ 143 (206)
T 4dzz_A 142 EM 143 (206)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 226
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.32 E-value=8.2e-05 Score=74.06 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.4
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
..+++|+|++|+|||||||+|+|...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHhccccc
Confidence 34799999999999999999999754
No 227
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.30 E-value=0.00017 Score=74.99 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=40.5
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
..++||||||........-.. +... .. +-.+|.+++|+|+.. ..+....+..+...-...-+|+||+|..
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~e--l~~i-~~-~~~pd~vlLVvDa~t---gq~av~~a~~f~~~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGE--LARL-KE-VLGPDEVLLVLDAMT---GQEALSVARAFDEKVGVTGLVLTKLDGD 250 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHH--HHHH-HH-HHCCSEEEEEEEGGG---TTHHHHHHHHHHHHTCCCEEEEESGGGC
T ss_pred CCEEEEcCCCcccccHHHHHH--HHHh-hh-ccCCceEEEEEeccc---hHHHHHHHHHHHhcCCceEEEEeCcCCc
Confidence 579999999987532111111 1111 11 236899999999865 2333344444433223467899999965
No 228
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.26 E-value=0.00076 Score=68.50 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=41.8
Q ss_pred ceEEEeCCCCchhhhh----hhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 185 KINIVEIPGILEIRKQ----VERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 185 ~i~lIDTPGi~~~~~~----~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
...++||.|....... +++. -...++.++...+-+++|+|++. +... ...+..+.......++++||.|..
T Consensus 242 d~~lldt~Gl~~~~~~~~~eLSkq--r~~iaral~~~P~e~lLvLDptt-glD~--~~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTNYSLMEELIAC--KKAVGKIVSGAPNEILLVLDGNT-GLNM--LPQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCCHHHHHHHHHH--HHHHHHHSTTCCSEEEEEEEGGG-GGGG--HHHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhhhhHHHHHHHH--HHHHHHHHhcCCCceEEEEcCCC-CCCH--HHHHHHHHHhcCCeEEEEecCccc
Confidence 4689999998753322 2211 12334455677888899999764 2222 222334433223567899999865
No 229
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.22 E-value=0.00016 Score=72.01 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=22.5
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-|+++|+|..|||||||+|.|+|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4679999999999999999999863
No 230
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.21 E-value=0.00018 Score=73.03 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.6
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
-+++|+|++|+|||||||.|+|...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3799999999999999999999754
No 231
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.12 E-value=0.00054 Score=67.90 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=40.6
Q ss_pred ceEEEeCCCCchhhhh----hhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy13475 185 KINIVEIPGILEIRKQ----VERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQV 260 (468)
Q Consensus 185 ~i~lIDTPGi~~~~~~----~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v 260 (468)
...++||.|....... +++. ....++.++...+-+++|+|++. +... ...+..+.......++++||.|..
T Consensus 185 d~~lldt~gl~~~~~~~~~eLSkq--r~~iaral~~~P~e~lLvLDpts-glD~--~~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNYSLMEELIAC--KKAVGKIVSGAPNEILLVLDGNT-GLNM--LPQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCCHHHHHHHHHH--HHHHHTTSTTCCSEEEEEEEGGG-GGGG--HHHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcchhHHHHHHHHH--HHHHHHhhccCCCeeEEEEeCCC-CcCH--HHHHHHHHHhcCCCEEEEeCCCCC
Confidence 4678999998653322 1111 11223334567788899999764 3222 222344443223567889999875
No 232
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.02 E-value=0.0004 Score=68.48 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=39.7
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~ 261 (468)
..++||||||........-.. +...... -.+|.+++|+|+.. ..+....++.+...-...-+|+||+|...
T Consensus 181 ~D~viiDtpp~~~~d~~~~~~--l~~~~~~--~~~~~~~lv~~~~~---~~~~~~~~~~~~~~~~i~givlnk~d~~~ 251 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDEPLMGE--LARLKEV--LGPDEVLLVLDAMT---GQEALSVARAFDEKVGVTGLVLTKLDGDA 251 (295)
T ss_dssp CCEEEEECCCCSSCCHHHHHH--HHHHHHH--HCCSEEEEEEEGGG---THHHHHHHHHHHHHTCCCEEEEECGGGCS
T ss_pred CCEEEEeCCCCccccHHHHHH--HHHHhhh--cCCCEEEEEEeCCC---cHHHHHHHHHHhhcCCCCEEEEECCCCCc
Confidence 579999999876432111111 1111111 15788999999864 23333333444322233568999999753
No 233
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.91 E-value=0.0011 Score=69.32 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=18.4
Q ss_pred EEEEeccCCCChhhHHHHHh
Q psy13475 97 LVLFMGPWSGGKSSIINYLL 116 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Ll 116 (468)
+|+|+|.+++|||+|+|.|+
T Consensus 69 vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 69 AVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHH
Confidence 48999999999999999776
No 234
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.90 E-value=0.00076 Score=66.54 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=24.0
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCccc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEYS 121 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~~ 121 (468)
..-+++++|++|+|||||||.|.|...+
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccc
Confidence 3457999999999999999999997553
No 235
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.86 E-value=0.0012 Score=65.08 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=21.6
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
..-+++++|++|+|||||+|+|+ ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 34479999999999999999999 53
No 236
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.81 E-value=0.0014 Score=64.63 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=47.3
Q ss_pred ceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCH-hHHHHHHHHhcCCCcEEEEEeCCCCCChH
Q psy13475 185 KINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGP-ETEAILDQLKGREYQTRIILNKADQVKPE 263 (468)
Q Consensus 185 ~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~-e~~~ll~~l~~~~~~iiiVlNK~D~v~~~ 263 (468)
.+.++|| .+. +....+.++.++|++++|+|++....+. ....++..+...+.|+++|+||+|+.+..
T Consensus 64 ~~~iwD~---qer---------~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~ 131 (301)
T 1u0l_A 64 SGVIENV---LHR---------KNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDED 131 (301)
T ss_dssp SEEEEEE---CCC---------SCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH
T ss_pred eEEEEEE---ccc---------cceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCch
Confidence 6899999 221 2222344689999999999998743333 33455555555678999999999998654
Q ss_pred H
Q psy13475 264 E 264 (468)
Q Consensus 264 e 264 (468)
+
T Consensus 132 ~ 132 (301)
T 1u0l_A 132 D 132 (301)
T ss_dssp H
T ss_pred h
Confidence 3
No 237
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.42 E-value=0.0013 Score=60.70 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.7
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.-+++|+|++|+|||||+|.|.|.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 337999999999999999999985
No 238
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.31 E-value=0.0018 Score=60.22 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.7
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.+..+|+|+|++|+|||||+|.|++.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 34557999999999999999999975
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.30 E-value=0.0018 Score=58.53 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.2
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.+++|+|++|||||||+|.|++.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37999999999999999999985
No 240
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.18 E-value=0.0061 Score=59.56 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=40.2
Q ss_pred EeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCChHHH
Q psy13475 189 VEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKPEEL 265 (468)
Q Consensus 189 IDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~~el 265 (468)
=+.||+... ..+.+...+.++|+|+.|+|+.. +.+.....+-+.+ .+.|.++|+||+|+++.+..
T Consensus 4 ~w~PGhm~k---------a~~~~~~~l~~aDvVl~VvDAr~-p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~ 68 (282)
T 1puj_A 4 QWFPGHMAK---------ARREVTEKLKLIDIVYELVDARI-PMSSRNPMIEDIL--KNKPRIMLLNKADKADAAVT 68 (282)
T ss_dssp -----CTTH---------HHHHHHHHGGGCSEEEEEEETTS-TTTTSCHHHHHHC--SSSCEEEEEECGGGSCHHHH
T ss_pred cCCchHHHH---------HHHHHHHHHhhCCEEEEEEeCCC-CCccCCHHHHHHH--CCCCEEEEEECcccCCHHHH
Confidence 356887642 12345666899999999999987 3333222222333 35799999999999986543
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.16 E-value=0.0018 Score=59.60 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=20.6
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.++|+|++|+|||||+|.|+|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999984
No 242
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.13 E-value=0.0066 Score=59.35 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=40.6
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc----CCCcEE-EEEeCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG----REYQTR-IILNKAD 258 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~----~~~~ii-iVlNK~D 258 (468)
..++|||||+...... +...+..||.+++|+.++... -.....+++.+.. .+.+++ +|+|+++
T Consensus 157 yD~ViiD~p~~~~~~~-----------~~~~l~~aD~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~ 224 (307)
T 3end_A 157 TDVVIFDVLGDVVCGG-----------FAAPLQHADQAVVVTANDFDS-IYAMNRIIAAVQAKSKNYKVRLAGCVANRSR 224 (307)
T ss_dssp CSEEEEEECCSSCCGG-----------GGGGGGTCSEEEEEECSSHHH-HHHHHHHHHHHHTTTTTCCCEEEEEEEESCS
T ss_pred CCEEEEeCCCccchHH-----------HHHHHHHCCEEEEEecCcHHH-HHHHHHHHHHHHHhhhcCCCceEEEEEecCC
Confidence 6799999988654210 122367899999999886521 1233455666654 233433 8999998
Q ss_pred C
Q psy13475 259 Q 259 (468)
Q Consensus 259 ~ 259 (468)
.
T Consensus 225 ~ 225 (307)
T 3end_A 225 A 225 (307)
T ss_dssp C
T ss_pred c
Confidence 4
No 243
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.10 E-value=0.002 Score=65.18 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=45.3
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCC-------C---HhHHHHHHHHhc----CCCc
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDV-------G---PETEAILDQLKG----REYQ 249 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i-------~---~e~~~ll~~l~~----~~~~ 249 (468)
..+.++||+|...-. .....+.+.+++||+|+|.+..+- . .+...+++.+.. .+.|
T Consensus 193 ~~l~iwDt~GQe~~r----------~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 193 LHFKMFDVGGQRSER----------KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp EEEEEEEECCSGGGG----------GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred eeEEEEeCCCchhhh----------HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 568999999975432 223344789999999999886321 1 223344444443 3579
Q ss_pred EEEEEeCCCCC
Q psy13475 250 TRIILNKADQV 260 (468)
Q Consensus 250 iiiVlNK~D~v 260 (468)
+++|+||+|+.
T Consensus 263 iiLv~NK~DL~ 273 (353)
T 1cip_A 263 IILFLNKKDLF 273 (353)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEECcCch
Confidence 99999999974
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.00 E-value=0.0029 Score=57.54 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=20.8
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+++|+|++|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 6999999999999999999985
No 245
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.95 E-value=0.0029 Score=57.58 Aligned_cols=22 Identities=14% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.++++|++|+|||||++.|.|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999985
No 246
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.93 E-value=0.0022 Score=65.10 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=41.7
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCC-------C---HhHHHHHHHHhc----CCCc
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDV-------G---PETEAILDQLKG----REYQ 249 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i-------~---~e~~~ll~~l~~----~~~~ 249 (468)
..+.++||+|...-.. ....+.+.+++||+|+|.+..+- . .+...+++.+.. .+.|
T Consensus 201 ~~l~i~Dt~Gq~~~r~----------~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~p 270 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERK----------RWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVS 270 (362)
T ss_dssp EEEEEEEECC-----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred eEEEEEeccchhhhhh----------hHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCC
Confidence 5689999999854321 12233679999999999986320 1 122334444433 2479
Q ss_pred EEEEEeCCCCC
Q psy13475 250 TRIILNKADQV 260 (468)
Q Consensus 250 iiiVlNK~D~v 260 (468)
+++|+||+|+.
T Consensus 271 iILv~NK~DL~ 281 (362)
T 1zcb_A 271 IILFLNKTDLL 281 (362)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEEChhhh
Confidence 99999999974
No 247
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.91 E-value=0.0036 Score=59.47 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-+++|+|+.|+|||||++.|.|-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3379999999999999999999863
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.90 E-value=0.0031 Score=59.01 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.8
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+++|+|++|+|||||++.|+|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999985
No 249
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.86 E-value=0.004 Score=56.07 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+++|++|+|||||++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999986
No 250
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.83 E-value=0.0051 Score=63.33 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=44.9
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCC-------CH---hHHHHHHHHhcC----CCc
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDV-------GP---ETEAILDQLKGR----EYQ 249 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i-------~~---e~~~ll~~l~~~----~~~ 249 (468)
..+.++||+|.... ......+...++++|+|+|.+.++- .. +...+++.+... +.|
T Consensus 217 v~l~iwDtaGQe~~----------r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~p 286 (402)
T 1azs_C 217 VNFHMFDVGGQRDE----------RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS 286 (402)
T ss_dssp EEEEEEEECCSGGG----------GGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCC
T ss_pred ccceecccchhhhh----------hhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCe
Confidence 56889999997542 2223445789999999999976210 11 233444544432 469
Q ss_pred EEEEEeCCCCC
Q psy13475 250 TRIILNKADQV 260 (468)
Q Consensus 250 iiiVlNK~D~v 260 (468)
+++|+||+|+.
T Consensus 287 iiLvgNK~DL~ 297 (402)
T 1azs_C 287 VILFLNKQDLL 297 (402)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEEChhhh
Confidence 99999999974
No 251
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.82 E-value=0.0034 Score=56.88 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.5
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.++|+|++|||||||++.|+|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 252
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.81 E-value=0.01 Score=58.38 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=39.5
Q ss_pred HHhhcccCEEEEEEcCCCCCCCHh-HHHHHHHHhcCCCcEEEEEeCCCCCChH
Q psy13475 212 QWFIDRADIIFLVYDPSKLDVGPE-TEAILDQLKGREYQTRIILNKADQVKPE 263 (468)
Q Consensus 212 ~~~~~~aDlIllV~Da~~~~i~~e-~~~ll~~l~~~~~~iiiVlNK~D~v~~~ 263 (468)
+.++.++|.+++|+|++....+.. ..+++..+...+.|+++|+||+|+.+..
T Consensus 74 r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 74 RPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEE 126 (302)
T ss_dssp TTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH
T ss_pred HHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCcc
Confidence 346899999999999986444544 2355555666678999999999998764
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.80 E-value=0.0035 Score=57.86 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=20.7
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+|+|+|++|+|||||++.|.|.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999885
No 254
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.78 E-value=0.0041 Score=58.55 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
+++|+|++|||||||++.|+|..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 79999999999999999999863
No 255
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.76 E-value=0.004 Score=58.71 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=22.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-+++|+|+.|+|||||++.|.|-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3379999999999999999999863
No 256
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.70 E-value=0.0042 Score=60.02 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.3
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
...+++|+|++|+|||||++.|+|.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3447999999999999999999985
No 257
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.65 E-value=0.0054 Score=58.56 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=22.2
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-+++++|+.|+|||||++.|.|-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999999963
No 258
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.65 E-value=0.0061 Score=61.35 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=44.8
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC-------CCH---hHHHHHHHHhc----CCCc
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD-------VGP---ETEAILDQLKG----REYQ 249 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~-------i~~---e~~~ll~~l~~----~~~~ 249 (468)
..+.++||+|... +......+.+.+++||+|+|.+.++ -.. +...+++.+.. .+.|
T Consensus 161 v~l~iwDtaGQe~----------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~p 230 (340)
T 4fid_A 161 IPFHLIDVGGQRS----------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAV 230 (340)
T ss_dssp CEEEEEECCSCHH----------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSE
T ss_pred eeeccccCCCccc----------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCe
Confidence 5689999999754 2233455678999999999987221 112 22334444432 3469
Q ss_pred EEEEEeCCCCC
Q psy13475 250 TRIILNKADQV 260 (468)
Q Consensus 250 iiiVlNK~D~v 260 (468)
+++|+||+|+.
T Consensus 231 iiLv~NK~DL~ 241 (340)
T 4fid_A 231 KLIFLNKMDLF 241 (340)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEECchhh
Confidence 99999999975
No 259
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.62 E-value=0.005 Score=55.15 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.1
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
+++++|++|+|||||++.+++
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 699999999999999998664
No 260
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.62 E-value=0.0055 Score=58.26 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=22.3
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-+++|+|+.|+|||||++.|+|-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3379999999999999999999974
No 261
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.62 E-value=0.0055 Score=59.22 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-+++|+|+.|+|||||++.|.|-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999963
No 262
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.61 E-value=0.0054 Score=56.68 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.5
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.+|+|+|++||||||+++.|++..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 369999999999999999999863
No 263
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.56 E-value=0.0055 Score=58.97 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.3
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-+++|+|+.|+|||||++.|.|-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3379999999999999999999963
No 264
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.56 E-value=0.0062 Score=55.38 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
+|+|+|++||||||+++.|.+.-
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 69999999999999999998864
No 265
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.55 E-value=0.0059 Score=54.52 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=21.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
+++++|+.|+|||||++.|.|.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 69999999999999999999864
No 266
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.54 E-value=0.0056 Score=58.38 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=21.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
+++|+|+.|+|||||++.|.|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999963
No 267
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.52 E-value=0.0054 Score=56.27 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=20.6
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+|+|++|+|||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999885
No 268
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.50 E-value=0.0059 Score=59.19 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-+++|+|+.|+|||||++.|.|-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3379999999999999999999963
No 269
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.50 E-value=0.0054 Score=57.56 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-+++|+|+.|+|||||++.|.|-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999999963
No 270
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.50 E-value=0.0064 Score=58.89 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-+++|+|+.|+|||||++.|.|-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3379999999999999999999963
No 271
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.48 E-value=0.0054 Score=62.04 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=43.6
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCC-------CCHh---HHHHHHHHhc----CCCc
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLD-------VGPE---TEAILDQLKG----REYQ 249 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~-------i~~e---~~~ll~~l~~----~~~~ 249 (468)
..+.++||+|...-. .....+...++++|+|+|.+.++ -... ...+++.+.. .+.|
T Consensus 183 v~l~iwDtaGQe~~r----------~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p 252 (354)
T 2xtz_A 183 EVYRLFDVGGQRNER----------RKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 252 (354)
T ss_dssp -EEEEEEECCSTTGG----------GGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred eeeEEEECCCchhhh----------HHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe
Confidence 468999999975422 22334578999999999986211 1122 2334444443 3479
Q ss_pred EEEEEeCCCCC
Q psy13475 250 TRIILNKADQV 260 (468)
Q Consensus 250 iiiVlNK~D~v 260 (468)
+++|+||+|+.
T Consensus 253 iiLvgNK~DL~ 263 (354)
T 2xtz_A 253 FMLFLNKFDIF 263 (354)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEECcchh
Confidence 99999999974
No 272
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.48 E-value=0.0061 Score=59.44 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-+++|+|+.|+|||||++.|.|-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 379999999999999999999963
No 273
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.47 E-value=0.0063 Score=57.52 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.3
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-+++|+|+.|+|||||++.|+|-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3379999999999999999999963
No 274
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.46 E-value=0.0063 Score=58.28 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=22.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-+++|+|+.|+|||||++.|.|-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3379999999999999999999963
No 275
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.45 E-value=0.0058 Score=57.06 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=21.1
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+++++|+.|+|||||++.|.|-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999997
No 276
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.45 E-value=0.0064 Score=57.87 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=22.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-+++++|+.|+|||||++.|.|-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3379999999999999999999963
No 277
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.44 E-value=0.0069 Score=58.40 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-+++|+|+.|+|||||++.|.|-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999963
No 278
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.43 E-value=0.007 Score=60.00 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.6
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.-+++|+|++|+|||||++.|+|-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 337999999999999999999975
No 279
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.41 E-value=0.0069 Score=58.01 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.9
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.-+++|+|+.|+|||||++.|.|-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 337999999999999999999996
No 280
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.39 E-value=0.0069 Score=58.18 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-+++++|+.|+|||||++.|.|-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3379999999999999999999963
No 281
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.39 E-value=0.0058 Score=61.88 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=22.6
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..++|+|+|++|+|||||+++|+|.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4558999999999999999999985
No 282
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.39 E-value=0.0076 Score=58.37 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.5
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
-+++|+|+.|+|||||++.|.|-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999996
No 283
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.38 E-value=0.0075 Score=58.20 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=21.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
-+++|+|+.|+|||||++.|.|-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37999999999999999999985
No 284
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.35 E-value=0.0068 Score=55.02 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=22.0
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.+.++|+|++|+|||||++.|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 468999999999999999999875
No 285
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.33 E-value=0.0078 Score=58.45 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-+++|+|+.|+|||||++.|.|-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999963
No 286
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.33 E-value=0.007 Score=56.60 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=15.8
Q ss_pred CEEEEeccCCCChhhHHHHHh-CC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLL-DN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Ll-g~ 118 (468)
.+++|+|++|||||||++.|. |.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 369999999999999999999 75
No 287
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.27 E-value=0.0083 Score=52.39 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=19.0
Q ss_pred CEEEEeccCCCChhhHHHHH
Q psy13475 96 PLVLFMGPWSGGKSSIINYL 115 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~L 115 (468)
++|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 288
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.26 E-value=0.008 Score=57.78 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-+++++|+.|+|||||++.|.|-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3379999999999999999999964
No 289
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.26 E-value=0.0086 Score=57.93 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=21.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
+++|+|+.|+|||||++.|.|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999963
No 290
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.22 E-value=0.0083 Score=58.59 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-+++|+|+.|+|||||++.|.|-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3379999999999999999999963
No 291
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.19 E-value=0.0079 Score=54.21 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.++++|++|+||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999986
No 292
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.14 E-value=0.0093 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.6
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..|+|+|++|+||||+++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 36999999999999999999764
No 293
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.04 E-value=0.0079 Score=58.15 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=36.2
Q ss_pred HHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCChHHH
Q psy13475 209 DACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKPEEL 265 (468)
Q Consensus 209 ~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~~el 265 (468)
+..+..+.++|+|+.|+|+.. +.+..... ++ +. +.|.++|+||+|+++.+..
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~-P~~~~~~~-l~-ll--~k~~iivlNK~DL~~~~~~ 64 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARA-PFATSAYG-VD-FS--RKETIILLNKVDIADEKTT 64 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTS-TTTTSCTT-SC-CT--TSEEEEEEECGGGSCHHHH
T ss_pred HHHHHHHhhCCEEEEEeeCCC-CCcCcChH-HH-hc--CCCcEEEEECccCCCHHHH
Confidence 345666899999999999986 33322111 11 22 6899999999999986543
No 294
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.03 E-value=0.01 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.6
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.+|+|+|++||||||+.+.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36999999999999999999764
No 295
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.02 E-value=0.012 Score=55.61 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=21.4
Q ss_pred CEEEEeccCCCChhhHHHHHh---CCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLL---DNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Ll---g~~ 119 (468)
..|+|+|++|||||||++.|. |..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 369999999999999999999 753
No 296
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.00 E-value=0.0089 Score=55.10 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.2
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
-+++|+|++|+|||||++.|+|.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999984
No 297
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.00 E-value=0.0095 Score=52.63 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+|+|++|+||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999774
No 298
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.95 E-value=0.0091 Score=61.73 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.3
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..++|+|+|++|+|||||+++|+|.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999985
No 299
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.93 E-value=0.011 Score=57.20 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.7
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.++++|+.|+|||||++.|.|-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999975
No 300
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.88 E-value=0.012 Score=57.82 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=22.0
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-+++|+|+.|+|||||++.|.|-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 379999999999999999999974
No 301
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.88 E-value=0.011 Score=60.16 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.1
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
...+|+|+|++|+|||||++.|+|.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3447999999999999999999985
No 302
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.87 E-value=0.012 Score=54.83 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.5
Q ss_pred cCCCEEEEeccCCCChhhHHHHHhC
Q psy13475 93 FSKPLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 93 ~~~p~V~ivG~~n~GKSTLIN~Llg 117 (468)
.+.-+++|+|++|+|||||++.|++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3444799999999999999999984
No 303
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.86 E-value=0.0087 Score=59.31 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-+|+|+|++|+|||||++.|+|--
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 369999999999999999999863
No 304
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.83 E-value=0.011 Score=59.62 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=21.8
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
...++|+|++|+|||||+|+|+|.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 347999999999999999999995
No 305
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.76 E-value=0.0061 Score=55.18 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=21.2
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..|+|+|++|+|||||++.|++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999985
No 306
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.74 E-value=0.011 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.4
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.++++|++|+|||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999885
No 307
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.69 E-value=0.015 Score=59.01 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.3
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-+++|+|+.|+|||||++.|.|-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3379999999999999999999964
No 308
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=94.68 E-value=0.017 Score=57.79 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=43.2
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCC-------CCCH---hHHHHHHHHhc----CCCc
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKL-------DVGP---ETEAILDQLKG----REYQ 249 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~-------~i~~---e~~~ll~~l~~----~~~~ 249 (468)
..+.++||.|...-. .....+.+.++++|+|+|.+.+ .-.. +...+++.+.. .+.|
T Consensus 167 v~l~iwDtgGQe~~R----------~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 167 VIFRMVDVGGQRSER----------RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS 236 (327)
T ss_dssp EEEEEEEECCSHHHH----------TTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred eeeEEEEcCCchhHH----------HHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence 468899999975432 2233457899999999965411 1112 23344444433 3479
Q ss_pred EEEEEeCCCCC
Q psy13475 250 TRIILNKADQV 260 (468)
Q Consensus 250 iiiVlNK~D~v 260 (468)
+++++||+|+.
T Consensus 237 iiL~~NK~DL~ 247 (327)
T 3ohm_A 237 VILFLNKKDLL 247 (327)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEEECchhh
Confidence 99999999975
No 309
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.67 E-value=0.014 Score=57.99 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=20.7
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+|+|+|++|+|||||++.|.|.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhh
Confidence 6999999999999999999885
No 310
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.65 E-value=0.015 Score=51.95 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.3
Q ss_pred CCCEEEEeccCCCChhhHHHHHhC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg 117 (468)
..++.+|+|+.|+|||||+.+|.+
T Consensus 25 ~~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 25 SKGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp CSSEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999865
No 311
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.60 E-value=0.011 Score=59.10 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.7
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
...++|+|++|+|||||+|.|+|.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999985
No 312
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.57 E-value=0.016 Score=58.71 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=22.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
-+++++|++|+|||||++.|.|-.-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3799999999999999999999643
No 313
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.57 E-value=0.016 Score=51.88 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..++++|++|+|||||++++.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999875
No 314
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.54 E-value=0.015 Score=51.58 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+++|++|+||||+.+.|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5999999999999999998763
No 315
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.53 E-value=0.018 Score=50.64 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.5
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
...++++|++|+|||||++++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999885
No 316
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.51 E-value=0.017 Score=58.50 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=22.8
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
.-+++++|+.|+|||||++.|.|-.-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34799999999999999999999643
No 317
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.49 E-value=0.018 Score=58.38 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.4
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.-+++++|+.|+|||||++.|.|-.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3479999999999999999999964
No 318
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.49 E-value=0.015 Score=53.03 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=20.3
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+|+|+|++|+||||+.+.|.+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999875
No 319
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.48 E-value=0.018 Score=58.29 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-+++++|++|+|||||++.|.|-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 379999999999999999999964
No 320
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.45 E-value=0.016 Score=54.86 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+|+|+|+.|+|||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999773
No 321
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.38 E-value=0.02 Score=58.51 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=22.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
-+++++|++|+|||||++.|.|-.-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3799999999999999999999643
No 322
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.35 E-value=0.022 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.266 Sum_probs=21.1
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..|+|+|.+|+||||+.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36999999999999999999885
No 323
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.34 E-value=0.019 Score=58.41 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=22.7
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
..-+++++|+.|+|||||++.|.|-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 33479999999999999999999964
No 324
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.33 E-value=0.021 Score=58.18 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=22.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
-+++++|+.|+|||||++.|.|-.-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3799999999999999999999643
No 325
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.32 E-value=0.019 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=20.6
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..|+|+|++|+||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 326
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.32 E-value=0.019 Score=52.76 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=19.3
Q ss_pred EEEeccCCCChhhHHHHHhCC
Q psy13475 98 VLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~ 118 (468)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999865
No 327
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.30 E-value=0.06 Score=53.27 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=37.7
Q ss_pred HhhcccCEEEEEEcCCCCCCCHh-HHHHHHHHhcCCCcEEEEEeCCCCCChH
Q psy13475 213 WFIDRADIIFLVYDPSKLDVGPE-TEAILDQLKGREYQTRIILNKADQVKPE 263 (468)
Q Consensus 213 ~~~~~aDlIllV~Da~~~~i~~e-~~~ll~~l~~~~~~iiiVlNK~D~v~~~ 263 (468)
..+.++|.|++|+|+.....+.. ..+++......+.|.++|+||+|+.+..
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 45899999999999986455543 2234444445678999999999998753
No 328
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.29 E-value=0.022 Score=49.88 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+|+|.+||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999653
No 329
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.19 E-value=0.025 Score=50.44 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.9
Q ss_pred CCCEEEEeccCCCChhhHHHHHhC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg 117 (468)
+.+.|+++|.+|+||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 455799999999999999999873
No 330
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.16 E-value=0.019 Score=60.84 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.6
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.++|+|++|||||||+|+|+|.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4999999999999999999985
No 331
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.10 E-value=0.023 Score=50.12 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.7
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
+|+++|.+||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 599999999999999999976
No 332
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.08 E-value=0.05 Score=52.64 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=20.0
Q ss_pred EEEeccCCCChhhHHHHHhCC
Q psy13475 98 VLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~ 118 (468)
|+++|++|+|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999884
No 333
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.04 E-value=0.017 Score=58.20 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=22.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
-+++++|+.|+|||||++.|.|-.-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 3799999999999999999999643
No 334
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.03 E-value=0.028 Score=50.30 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+++|.+||||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999864
No 335
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.01 E-value=0.027 Score=60.13 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=22.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
+++++|+.|+|||||++.|.|.-.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 699999999999999999999644
No 336
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.00 E-value=0.02 Score=56.38 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=20.6
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+|+|+|++|+|||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999884
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.97 E-value=0.026 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.2
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+++|++||||||+.+.|.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5999999999999999999873
No 338
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.97 E-value=0.077 Score=51.24 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=45.9
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEE-EEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTR-IILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ii-iVlNK~D~v 260 (468)
..++|||||+..... .+...+..+|.+++|+.+... ........++.+...+.+++ +|+|++|..
T Consensus 192 yD~VIIDtpp~~~~~-----------d~~~l~~~aD~vilVv~~~~~-~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-----------DAQLFSKFTGNVVYVVNSENN-NKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS-----------HHHHHHHHHCEEEEEEETTSC-CHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH-----------HHHHHHHHCCEEEEEEeCCCC-cHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 469999999976421 123335678999999998763 23456667777877666765 899999854
No 339
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.94 E-value=0.021 Score=53.58 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.7
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+|+|.|+.|+||||+++.|.+.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5999999999999999999885
No 340
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.93 E-value=0.026 Score=51.76 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=21.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.-.++|+|++|+|||||++.|++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 347999999999999999999864
No 341
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.91 E-value=0.03 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.9
Q ss_pred CEEEEeccCCCChhhHHHHHh---CCcc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLL---DNEY 120 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Ll---g~~~ 120 (468)
..|+|+|++|+||||+.+.|. |..+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 469999999999999999998 6543
No 342
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.87 E-value=0.024 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.9
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+|+|.+||||||+.+.|.+.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999654
No 343
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.87 E-value=0.027 Score=57.65 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.8
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.-+++++|++|+|||||++.|.|-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 337999999999999999999985
No 344
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.85 E-value=0.027 Score=56.20 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.9
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+|+|+|++|+|||||++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999998764
No 345
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.80 E-value=0.02 Score=57.67 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.7
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.-.++|+|++|+|||||++.|.|.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 336999999999999999999986
No 346
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.79 E-value=0.016 Score=58.45 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=22.0
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-+++++|+.|+|||||++.|.|-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999999964
No 347
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.74 E-value=0.025 Score=51.42 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|+|.+|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 599999999999999999987
No 348
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.74 E-value=0.025 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=20.2
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+|+|+|++|+|||||++.|.+.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999763
No 349
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.73 E-value=0.025 Score=59.13 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
..+.|+|+|+.|+|||||++.|+|...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 345799999999999999999999743
No 350
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.68 E-value=0.052 Score=52.94 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+++|++||||||+.+.|...
T Consensus 35 livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999753
No 351
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.67 E-value=0.031 Score=50.50 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=21.4
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.+.+.|+|.+|+|||||++.|++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
No 352
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.61 E-value=0.032 Score=49.78 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.2
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+++|.+||||||+.+.|..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999964
No 353
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.59 E-value=0.036 Score=49.32 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=19.3
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|.|.+||||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 354
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.57 E-value=0.049 Score=55.12 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=35.5
Q ss_pred hhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 207 FNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 207 ~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
|.+....+.+.+|++++|+|+... ...+...+..+.+ +.|+++|+||+|+.+.
T Consensus 59 f~~~l~~i~~~~~~il~VvD~~d~--~~~~~~~l~~~~~-~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 59 FLRILNGIGKSDALVVKIVDIFDF--NGSWLPGLHRFVG-NNKVLLVGNKADLIPK 111 (368)
T ss_dssp HHHHHHHHHHSCCEEEEEEETTSH--HHHCCTTHHHHSS-SSCEEEEEECGGGSCT
T ss_pred HHHHHHHHhccCcEEEEEEECCCC--cccHHHHHHHHhC-CCcEEEEEEChhcCCc
Confidence 556666777788899999999752 1111112222222 5799999999999754
No 355
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.55 E-value=0.037 Score=48.98 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..|+++|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36999999999999999999763
No 356
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.54 E-value=0.034 Score=50.63 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=20.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..|+++|++|+||||+.+.|.+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999753
No 357
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.53 E-value=0.032 Score=50.28 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=19.4
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999975
No 358
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.52 E-value=0.039 Score=49.44 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+++|.+|+||||+.+.|.+.
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5999999999999999998764
No 359
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.52 E-value=0.054 Score=54.84 Aligned_cols=52 Identities=12% Similarity=0.085 Sum_probs=36.2
Q ss_pred hhHHHHHhhcccCEEEEEEcCCCCCCCHhHH-HHHHHHhcCCCcEEEEEeCCCCCCh
Q psy13475 207 FNDACQWFIDRADIIFLVYDPSKLDVGPETE-AILDQLKGREYQTRIILNKADQVKP 262 (468)
Q Consensus 207 ~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~-~ll~~l~~~~~~iiiVlNK~D~v~~ 262 (468)
|.+....+..+++++++|+|+.... ..+. .+.+.+ + +.|+++|+||+|+.+.
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~--~s~~~~l~~~l-~-~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFN--GSFIPGLPRFA-A-DNPILLVGNKADLLPR 113 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSG--GGCCSSHHHHC-T-TSCEEEEEECGGGSCT
T ss_pred HHHHHHHhhccCcEEEEEEECCCCC--CchhhHHHHHh-C-CCCEEEEEEChhcCCC
Confidence 5566667778999999999998642 1111 122222 2 5799999999999864
No 360
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.46 E-value=0.041 Score=50.18 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.5
Q ss_pred CCCEEEEeccCCCChhhHHHHHhC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg 117 (468)
+.-+++++|++|+|||||++.|++
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999999988
No 361
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.45 E-value=0.034 Score=49.51 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=19.4
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999965
No 362
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.42 E-value=0.035 Score=53.79 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=21.5
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.-+++|+|++|+|||||++.|+|.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 337999999999999999999885
No 363
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.37 E-value=0.04 Score=48.31 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.5
Q ss_pred CCCEEEEeccCCCChhhHHHHHh
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLL 116 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Ll 116 (468)
..++.+|+|+.|+||||++.+|.
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999975
No 364
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.34 E-value=0.031 Score=52.80 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.8
Q ss_pred EEEeccCCCChhhHHHHHhCC
Q psy13475 98 VLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~ 118 (468)
++++|++|+|||||+++|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999874
No 365
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.23 E-value=0.019 Score=52.49 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+|+|.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 366
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.18 E-value=0.042 Score=49.56 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+|+|.+||||||+.+.|...
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5999999999999999999875
No 367
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.15 E-value=0.042 Score=48.91 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=20.0
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+++|.+|+||||+.+.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999764
No 368
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.14 E-value=0.049 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.3
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+|.|.+||||||+.+.|...
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5999999999999999999765
No 369
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.07 E-value=0.045 Score=49.57 Aligned_cols=21 Identities=43% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|.|.+||||||+.+.|..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999965
No 370
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.05 E-value=0.048 Score=48.62 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=19.1
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|+|.+||||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 371
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.00 E-value=0.054 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+.++|.|++|+||||+++++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 372
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.98 E-value=0.044 Score=58.96 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.++++|++|+|||||++.|+|--
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 69999999999999999999963
No 373
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.97 E-value=0.17 Score=49.44 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=45.6
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcE-EEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQT-RIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~i-iiVlNK~D~v 260 (468)
..++|||||+..... .+...+..+|.+++|+.+... ........++.+...+.++ -+|+|++|..
T Consensus 214 yD~VIIDtpp~~~~~-----------d~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVS-----------DAAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCT-----------HHHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhH-----------HHHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 469999999976421 123346789999999998763 3455666777777655544 4889999864
No 374
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.97 E-value=0.04 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.+|+|+|++|+|||||.+.|.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998764
No 375
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.96 E-value=0.048 Score=58.75 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-.++++|++|+|||||++.|+|--
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 369999999999999999999963
No 376
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.96 E-value=0.051 Score=49.99 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.6
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
+|+|+|.+||||||+.+.|.+
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999975
No 377
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.91 E-value=0.044 Score=59.29 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.6
Q ss_pred EEEEeccCCCChhhHHHHHhCCccc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEYS 121 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~~ 121 (468)
+++++|+.|+|||||+|.|.|...+
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHhcCCCC
Confidence 7999999999999999999997543
No 378
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.90 E-value=0.057 Score=57.50 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
-.++++|+.|+|||||++.|.|...
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3799999999999999999999743
No 379
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.89 E-value=0.045 Score=57.57 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=21.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-+++|+|+.|+|||||++.|.|-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999999853
No 380
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.87 E-value=0.053 Score=48.57 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=20.1
Q ss_pred CCEEEEeccCCCChhhHHHHHhC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg 117 (468)
...|+|+|.+|+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999864
No 381
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.85 E-value=0.045 Score=58.69 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=21.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.++++|++|+|||||++.|+|--
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 69999999999999999999963
No 382
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.84 E-value=0.046 Score=50.67 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.1
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+.-+++|+|++|+|||||+..|++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4447999999999999999999884
No 383
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.84 E-value=0.048 Score=55.12 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.5
Q ss_pred CCCEEEEeccCCCChhhHHHHHh
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLL 116 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Ll 116 (468)
..+..+|+|+.|+|||||+++|.
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 35688899999999999999986
No 384
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.84 E-value=0.12 Score=50.27 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=46.2
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCC-cEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREY-QTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~-~iiiVlNK~D~v~ 261 (468)
..++|||||+..... .+...+..+|.+++|+.+... ........++.+...+. .+-+|+|++|...
T Consensus 202 yD~VIIDtpp~~~~~-----------da~~l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-----------DAAIVGRHVGTTLMVARYAVN-TLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCT-----------HHHHHTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchH-----------HHHHHHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 469999999976431 133446789999999998763 23445567777776554 4568999998653
No 385
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.82 E-value=0.049 Score=58.45 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=21.4
Q ss_pred EEEEeccCCCChhhHHHHHhCCc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
.++++|++|+|||||++.|+|--
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999963
No 386
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.75 E-value=0.059 Score=48.00 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.1
Q ss_pred CCEEEEeccCCCChhhHHHHHhC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg 117 (468)
.+.|+++|.+|+||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999964
No 387
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.74 E-value=0.059 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.0
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
...|+++|.+|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 446999999999999999999764
No 388
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.72 E-value=0.069 Score=50.72 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+++|++|+||||+.+.|.+.
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5999999999999999999763
No 389
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.71 E-value=0.055 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.8
Q ss_pred CEEEEeccCCCChhhHHHHHhC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg 117 (468)
..|+|.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3599999999999999999964
No 390
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.67 E-value=0.068 Score=48.46 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.7
Q ss_pred CCC-EEEEeccCCCChhhHHHHHhC
Q psy13475 94 SKP-LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 94 ~~p-~V~ivG~~n~GKSTLIN~Llg 117 (468)
..| .|+|+|.+|+||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445 599999999999999999864
No 391
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.66 E-value=0.059 Score=49.01 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.5
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|.|.+||||||+.+.|..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999974
No 392
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.61 E-value=0.045 Score=52.57 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.8
Q ss_pred EEEeccCCCChhhHHHHHhCC
Q psy13475 98 VLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 98 V~ivG~~n~GKSTLIN~Llg~ 118 (468)
|+++|++|+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999874
No 393
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.59 E-value=0.059 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=20.0
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+|+|.|.+|+||||+++.|.+.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5999999999999999999764
No 394
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.54 E-value=0.056 Score=49.85 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|+|.+||||||+.+.|..
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999864
No 395
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.50 E-value=0.33 Score=46.01 Aligned_cols=65 Identities=9% Similarity=0.028 Sum_probs=43.3
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcEE-EEEeCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQTR-IILNKADQ 259 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~ii-iVlNK~D~ 259 (468)
..++|||||+...... .....+..+|.+++++.+.... -.....+++.++..+.+++ +|+|++|.
T Consensus 129 yD~ViID~pp~~~~~~----------~~~~~~~~aD~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 129 LDHLLIDLPPGTGDAP----------LTVMQDAKPTGVVVVSTPQELT-AVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSEEEEECCSSSSSHH----------HHHHHHHCCSEEEEEECSSSCC-HHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred CCEEEEECcCCCchHH----------HHHHhhccCCeEEEEecCccch-HHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 6799999998653210 0111123689999999887642 2345567777777667776 89999874
No 396
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.39 E-value=0.072 Score=50.02 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=22.4
Q ss_pred CccccCCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 89 DPEIFSKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 89 d~~~~~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+....+...|+|+|+|||||+|.-..|...
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344434446889999999999999888653
No 397
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.39 E-value=0.061 Score=48.17 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 398
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.37 E-value=0.064 Score=54.58 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.3
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
...++++|++|+|||||++.|.|.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 337999999999999999999873
No 399
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.30 E-value=0.051 Score=53.92 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.++++|++|+|||||++.|.|.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999875
No 400
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.27 E-value=0.04 Score=59.09 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=21.7
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-.++++|++|+|||||++.|+|--
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 369999999999999999999863
No 401
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.26 E-value=0.074 Score=50.30 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.2
Q ss_pred CCE-EEEeccCCCChhhHHHHHhC
Q psy13475 95 KPL-VLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 95 ~p~-V~ivG~~n~GKSTLIN~Llg 117 (468)
+|+ |+|+|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 444 99999999999999999964
No 402
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.25 E-value=0.075 Score=57.48 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.5
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
-.++++|+.|+|||||++.|.|...
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 3799999999999999999999744
No 403
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.25 E-value=0.061 Score=47.64 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=15.2
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|.|.+||||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp EEEEECCC----CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999864
No 404
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.18 E-value=0.73 Score=47.71 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
-|++.|+||+|||+|.+++.+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999764
No 405
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.16 E-value=0.065 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.8
Q ss_pred CEEEEeccCCCChhhHHHHHhC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg 117 (468)
+.|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 406
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.16 E-value=0.062 Score=57.27 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
-+++|+|+.|+|||||++.|.|-.-
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3699999999999999999999643
No 407
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.08 E-value=0.074 Score=47.72 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.9
Q ss_pred CEEEEeccCCCChhhHHHHHhC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg 117 (468)
..|+|+|.+|+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999865
No 408
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.06 E-value=0.074 Score=49.37 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.8
Q ss_pred CEEEEeccCCCChhhHHHHHhC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg 117 (468)
..|+|+|.+||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999974
No 409
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.06 E-value=0.071 Score=47.51 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.2
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 410
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.03 E-value=0.075 Score=48.96 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.4
Q ss_pred CCCEEEEeccCCCChhhHHHHHh
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLL 116 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Ll 116 (468)
..++.+|+|+.|+||||++.+|.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999999874
No 411
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.01 E-value=0.068 Score=47.62 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.5
Q ss_pred CEEEEeccCCCChhhHHHHHhC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg 117 (468)
+.|+|+|.+|+||||+-+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998854
No 412
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.94 E-value=0.078 Score=57.35 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=22.0
Q ss_pred EEEEeccCCCChhhHHHHHhCCcc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
.++|+|+.|+|||||++.|.|-.-
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 589999999999999999999754
No 413
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.91 E-value=0.055 Score=58.20 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.7
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
-.++++|++|+|||||++.|+|--
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 369999999999999999999863
No 414
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.88 E-value=0.077 Score=47.95 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.9
Q ss_pred CEEEEeccCCCChhhHHHHHhC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg 117 (468)
+.|+|.|.+|+||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 415
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.88 E-value=0.075 Score=48.79 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=20.0
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+|+++|.+|+||||+.+.|.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999998764
No 416
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=91.85 E-value=0.13 Score=47.36 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=44.6
Q ss_pred cceEEEeCCCC-chhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhc-CCCcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGI-LEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKG-REYQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi-~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~-~~~~iiiVlNK~D~v~ 261 (468)
..+++|||||. ... .+...+..+|.+++++.++..+ -.....+++.+.. .+.++.+|+|++|...
T Consensus 68 yD~viiD~p~~~~~~------------~~~~~l~~aD~viiv~~~~~~~-~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE------------DLEALADGCDLLVIPSTPDALA-LDALMLTIETLQKLGNNRFRILLTIIPPYP 134 (209)
T ss_dssp CSEEEEEEECCCSSS------------HHHHHHHTSSEEEEEECSSHHH-HHHHHHHHHHHHHTCSSSEEEEECSBCCTT
T ss_pred CCEEEEeCCCCcCcH------------HHHHHHHHCCEEEEEecCCchh-HHHHHHHHHHHHhccCCCEEEEEEecCCcc
Confidence 57999999986 432 1344567899999999886521 1223455555654 2567899999999764
No 417
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.76 E-value=0.076 Score=47.18 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=19.2
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|+|.+|+||||+.+.|..
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999864
No 418
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.74 E-value=0.076 Score=56.55 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
-.++|+|+.|+|||||++.|.|..-
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3699999999999999999999743
No 419
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.74 E-value=0.077 Score=48.99 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=19.2
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|+|.+||||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999864
No 420
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.68 E-value=0.078 Score=46.48 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=19.1
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999854
No 421
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.65 E-value=0.077 Score=48.57 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=18.8
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999954
No 422
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.61 E-value=0.079 Score=46.39 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.6
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.+.|+|.|++|+||||+++++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998764
No 423
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.57 E-value=0.082 Score=57.16 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
-.++|+|+.|+|||||++.|.|..-
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3699999999999999999999643
No 424
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.56 E-value=0.09 Score=47.60 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=19.3
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|.|.+|+||||+.+.|..
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999974
No 425
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.55 E-value=0.1 Score=47.82 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.9
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.+.++|.|++|+|||||++++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999998764
No 426
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.47 E-value=0.081 Score=53.16 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=22.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
...++|+|+.|+|||||++.|.|..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3369999999999999999999963
No 427
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.38 E-value=0.082 Score=50.63 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.4
Q ss_pred CCEEEEeccCCCChhhHHHHHhC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg 117 (468)
...|+|+|.+|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999999965
No 428
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.33 E-value=0.09 Score=48.17 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=18.9
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999964
No 429
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.33 E-value=0.096 Score=45.72 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999854
No 430
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=91.29 E-value=0.036 Score=56.34 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.9
Q ss_pred CCCEEEEeccCCCChhhHHHHHhC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg 117 (468)
..++++|+|+.|+|||||+++|.+
T Consensus 59 ~~G~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 59 GGGFCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp CSSEEEEEESHHHHHHHHTHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 455999999999999999988854
No 431
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.28 E-value=0.085 Score=50.27 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.8
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+|+|++|||||||-+.|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999999999753
No 432
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.24 E-value=0.086 Score=50.66 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.1
Q ss_pred ccCCCEEEEeccCCCChhhHHHHHhC
Q psy13475 92 IFSKPLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 92 ~~~~p~V~ivG~~n~GKSTLIN~Llg 117 (468)
+.+.-+++|+|++|+|||||+..+++
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 33444799999999999999999987
No 433
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.23 E-value=0.08 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.0
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
-|+++|++|+|||||.++|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 434
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.20 E-value=0.096 Score=46.35 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.1
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|+|++|+||||+-+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 499999999999999999865
No 435
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.17 E-value=0.11 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.0
Q ss_pred CCCEEEEeccCCCChhhHHHHHh
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLL 116 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Ll 116 (468)
..++.+|+|+.|+|||||+.+|.
T Consensus 23 ~~g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 23 SDRVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp CSSEEEEECCTTTCSTHHHHHHH
T ss_pred CCCcEEEECCCCCcHHHHHHHHH
Confidence 45699999999999999999987
No 436
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.07 E-value=0.11 Score=48.54 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.9
Q ss_pred CCCEEEEeccCCCChhhHHHHHhC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg 117 (468)
+...|+|+|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 444699999999999999999875
No 437
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.95 E-value=0.094 Score=51.88 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=25.5
Q ss_pred CEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcE-EEEEeCCCCC
Q psy13475 219 DIIFLVYDPSKLDVGPETEAILDQLKGREYQT-RIILNKADQV 260 (468)
Q Consensus 219 DlIllV~Da~~~~i~~e~~~ll~~l~~~~~~i-iiVlNK~D~v 260 (468)
+.+++|..+... .-.+..+.++.++..+.++ -+|+|++...
T Consensus 223 ~~~vlV~~p~~~-~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEM-SIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHH-HHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCccc-HHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 477777776542 2234556667777666665 5677887643
No 438
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.91 E-value=0.21 Score=48.55 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|++.|++|+|||||.++|.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5999999999999999999874
No 439
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.91 E-value=0.11 Score=54.02 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=21.7
Q ss_pred CEEEEeccCCCChhhHHHHHhCCc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNE 119 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~ 119 (468)
..++|+|++|+|||||++.|.|..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 379999999999999999999963
No 440
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.88 E-value=0.16 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.9
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..+|+++|.+|+||||+.+.|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999999764
No 441
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.81 E-value=0.1 Score=51.83 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
|.++|.|++|+|||||++++.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 442
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.79 E-value=0.12 Score=46.83 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=20.4
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..|++.|++|+|||||+.++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 443
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.68 E-value=0.21 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.-+++.|++|+|||||.+++.+.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35999999999999999999764
No 444
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.60 E-value=0.079 Score=53.11 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=27.9
Q ss_pred cCEEEEEEcCCCCCCCHhHHHHHHHHhcCCCcE-EEEEeCCCCC
Q psy13475 218 ADIIFLVYDPSKLDVGPETEAILDQLKGREYQT-RIILNKADQV 260 (468)
Q Consensus 218 aDlIllV~Da~~~~i~~e~~~ll~~l~~~~~~i-iiVlNK~D~v 260 (468)
.+.+++|..+... .-.+..+.++.++..+.|+ -+|+|++...
T Consensus 237 ~~~~vlV~~p~~~-~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 237 RTAFRLVVIPEEM-SILESERAMKALQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp TEEEEEEECSSHH-HHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CceEEEEECCCcc-HHHHHHHHHHHHHHCCCCeeEEEEcCCccc
Confidence 3678888777652 2244566777777777766 5688888754
No 445
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.58 E-value=0.12 Score=47.91 Aligned_cols=21 Identities=33% Similarity=0.503 Sum_probs=19.0
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 446
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.50 E-value=0.14 Score=46.34 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+.++|.|++|+|||||++++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998753
No 447
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.48 E-value=0.15 Score=47.54 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.7
Q ss_pred CEEEEeccCCCChhhHHHHHhC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg 117 (468)
..|+|+|.+|+||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999864
No 448
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=90.48 E-value=0.12 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.6
Q ss_pred CCCEEEEeccCCCChhhHHHHHh
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLL 116 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Ll 116 (468)
..++.+|+|+.|+||||++.++.
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999974
No 449
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=90.38 E-value=0.13 Score=52.77 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..++++|+|+.|+|||||++++.+-
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999764
No 450
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.38 E-value=0.024 Score=53.64 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=21.8
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
.+++|+|++|+|||||+++|.|-..
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc
Confidence 4688999999999999999998543
No 451
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.30 E-value=0.038 Score=58.88 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.6
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+.+.++++|++|+|||||.++|.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999998764
No 452
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.29 E-value=0.14 Score=45.85 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.+++.|++|+||||+++++...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998753
No 453
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.28 E-value=0.1 Score=51.51 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.++|.|++|+||||++++|.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999884
No 454
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=90.26 E-value=0.3 Score=45.66 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=43.0
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC---------CcEEEEE
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE---------YQTRIIL 254 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~---------~~iiiVl 254 (468)
..++|||||+-... .+...+..+|.++++++++... -.....+++.+.... ..+.+|+
T Consensus 114 yD~viiD~p~~~~~------------~~~~~l~~ad~vi~v~~~~~~s-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~ 180 (260)
T 3q9l_A 114 FEFIVCDSPAGIET------------GALMALYFADEAIITTNPEVSS-VRDSDRILGILASKSRRAENGEEPIKEHLLL 180 (260)
T ss_dssp CSEEEEECCSSSSH------------HHHHHHHTCSEEEEEECSSHHH-HHHHHHHHHHHTTSSHHHHTTCSCCEEEEEE
T ss_pred CCEEEEcCCCCCCH------------HHHHHHHhCCEEEEEecCChhH-HHHHHHHHHHHHHhccccccccCCcceEEEE
Confidence 67999999985432 2344567899999999986521 123445666665443 4678999
Q ss_pred eCCCC
Q psy13475 255 NKADQ 259 (468)
Q Consensus 255 NK~D~ 259 (468)
|++|.
T Consensus 181 N~~~~ 185 (260)
T 3q9l_A 181 TRYNP 185 (260)
T ss_dssp EEECH
T ss_pred ecCCc
Confidence 99884
No 455
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.25 E-value=0.12 Score=47.38 Aligned_cols=21 Identities=14% Similarity=0.525 Sum_probs=18.9
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999864
No 456
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.23 E-value=0.15 Score=48.46 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=19.7
Q ss_pred CEEEEeccCCCChhhHHHHHhC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg 117 (468)
..|+|.|++|+||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 457
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.18 E-value=0.13 Score=60.65 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+|||++|+|||||++.|+|-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5999999999999999999985
No 458
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.18 E-value=0.3 Score=48.46 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.8
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..+.++|.|+||+|||+++++++..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4557999999999999999999864
No 459
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.10 E-value=0.14 Score=47.18 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=19.1
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|+|.+||||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999854
No 460
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.97 E-value=0.15 Score=49.42 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=18.9
Q ss_pred EEEEeccCCCChhhHHHHHh
Q psy13475 97 LVLFMGPWSGGKSSIINYLL 116 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Ll 116 (468)
.|+|+|.+||||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 49999999999999999997
No 461
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=89.94 E-value=0.13 Score=54.56 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.7
Q ss_pred ccCCCEEEEeccCCCChhhHHHHHhC
Q psy13475 92 IFSKPLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 92 ~~~~p~V~ivG~~n~GKSTLIN~Llg 117 (468)
+.+.|.++|+|.+|+||||++|.|+.
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cccCceEEEECCCCCCHHHHHHHHHH
Confidence 33568899999999999999999875
No 462
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=89.94 E-value=2.2 Score=40.10 Aligned_cols=72 Identities=8% Similarity=-0.059 Sum_probs=32.4
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHH-H---HHHHhc----CCCcEEEEEe
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEA-I---LDQLKG----REYQTRIILN 255 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~-l---l~~l~~----~~~~iiiVlN 255 (468)
..+..-.+||=.+..++-. +....+.+.+.+|.||||+|++....-+ .+. + ...+.+ .+.|++|..|
T Consensus 96 ~k~~~~~~~~~~~~GGQ~k----lRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlAN 170 (227)
T 3l82_B 96 NKMFSRHNEGDDQQGSRYS----VIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSC 170 (227)
T ss_dssp -------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEE
T ss_pred hhcccccCCCccccCcHHH----HHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeC
Confidence 3466677887433333311 2233667789999999999997633222 222 2 222322 3468999999
Q ss_pred CC-CCC
Q psy13475 256 KA-DQV 260 (468)
Q Consensus 256 K~-D~v 260 (468)
|. |..
T Consensus 171 KqqDlp 176 (227)
T 3l82_B 171 ISQGDV 176 (227)
T ss_dssp ESSTTS
T ss_pred CCcCcc
Confidence 96 554
No 463
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.91 E-value=0.32 Score=44.99 Aligned_cols=65 Identities=25% Similarity=0.315 Sum_probs=44.7
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC---CcEEEEEeCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE---YQTRIILNKADQV 260 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~---~~iiiVlNK~D~v 260 (468)
..++|||||+..+. .+...+..+|.+++++.++... -.....+++.+...+ ..+.+|+|+++..
T Consensus 119 yD~viiD~p~~~~~------------~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 119 YDYIIVDFGASIDH------------VGVWVLEHLDELCIVTTPSLQS-LRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp CSEEEEEEESSCCT------------THHHHGGGCSEEEEEECSSHHH-HHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred CCEEEEeCCCCCch------------HHHHHHHHCCEEEEEecCcHHH-HHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 57999999986532 1344577899999999886521 223445666666544 4588999999865
Q ss_pred C
Q psy13475 261 K 261 (468)
Q Consensus 261 ~ 261 (468)
.
T Consensus 186 ~ 186 (245)
T 3ea0_A 186 S 186 (245)
T ss_dssp T
T ss_pred C
Confidence 3
No 464
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.84 E-value=0.13 Score=50.79 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=21.1
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
...++|.|++|+|||||++++.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999874
No 465
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.78 E-value=0.15 Score=47.77 Aligned_cols=21 Identities=29% Similarity=0.418 Sum_probs=18.7
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.+++.|+||+||||+..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999888764
No 466
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.76 E-value=0.17 Score=47.89 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=19.2
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|.|.+||||||+-+.|..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998855
No 467
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.67 E-value=0.18 Score=46.63 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=19.7
Q ss_pred CCCEEEEeccCCCChhhHHHHHhC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg 117 (468)
+.-+++|+|++|+|||||...++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999776654
No 468
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.60 E-value=0.14 Score=60.16 Aligned_cols=22 Identities=41% Similarity=0.535 Sum_probs=21.0
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.++|+|++|+|||||++.|+|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 6999999999999999999996
No 469
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.49 E-value=0.17 Score=44.24 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.1
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+|.|.+||||||+-+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999854
No 470
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=89.41 E-value=0.15 Score=51.45 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=21.4
Q ss_pred CCCEEEEeccCCCChhhHHHHHhC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg 117 (468)
..++++|+|+.|+||||++++|.+
T Consensus 25 ~~g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 25 PEGVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEECCCCCChhHHHHHHHH
Confidence 455899999999999999999975
No 471
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.37 E-value=0.18 Score=47.17 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+|.|..|+||||+.+.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5999999999999999999753
No 472
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.34 E-value=0.21 Score=46.71 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=20.7
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..-|++.|++|+|||++.+++.+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999999763
No 473
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.32 E-value=0.16 Score=50.47 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.7
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+++.|+|+|++++|||||...|...
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHh
Confidence 3557999999999999999999764
No 474
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.32 E-value=0.16 Score=49.46 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=17.4
Q ss_pred CCEEEEeccCCCChhhHHHHHhC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg 117 (468)
..+|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999865
No 475
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.31 E-value=0.11 Score=59.22 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
-.++|+|+.|+|||||++.|.|...
T Consensus 700 eivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3699999999999999999999643
No 476
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.29 E-value=0.18 Score=48.71 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.6
Q ss_pred EEEEeccCCCChhhHHHHHhC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLD 117 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg 117 (468)
.|+++|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999976
No 477
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=89.26 E-value=0.59 Score=44.15 Aligned_cols=63 Identities=8% Similarity=0.066 Sum_probs=43.6
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcC--CCcEEEEEeCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGR--EYQTRIILNKADQ 259 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~--~~~iiiVlNK~D~ 259 (468)
..++|||||+..+. .+...+..||.+++++.++...+ .....+++.+... +.++.+|+|+++.
T Consensus 145 yD~viiD~pp~~~~------------~~~~~l~~aD~vivv~~~~~~s~-~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 145 YDYIVIDTNPSLDV------------TLKNALLCSDYVIIPMTAEKWAV-ESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp CSEEEEEECSSCSH------------HHHHHHTTCSEEEEEEESCTTHH-HHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCEEEEECcCCccH------------HHHHHHHHCCeEEEEeCCChHHH-HHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 67999999986532 13344667999999999876322 3344566666654 3478899999953
No 478
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.26 E-value=0.1 Score=49.65 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.3
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.+|+|.|.+|+||||+.+.|...
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35999999999999999998754
No 479
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.20 E-value=0.18 Score=48.41 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.6
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..|++.|++|+||||+.+++.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36999999999999999999764
No 480
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.12 E-value=0.15 Score=51.09 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=22.1
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
..-++.|+|++|+|||||++.|++.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4447999999999999999999885
No 481
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.92 E-value=0.17 Score=51.12 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
..+.++|+|++|+|||||++.|+..-.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999987643
No 482
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=88.84 E-value=0.12 Score=56.47 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.1
Q ss_pred CCEEEEeccCCCChhhHHHHHh
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLL 116 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Ll 116 (468)
.-+++|+|+.|+|||||+|.++
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 3369999999999999998765
No 483
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.78 E-value=0.31 Score=48.03 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.++|.|++|+||||+++++...
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 484
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.67 E-value=0.21 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.9
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+++|.+||||||+-+.|...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6999999999999999998654
No 485
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.59 E-value=0.19 Score=57.14 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.2
Q ss_pred CCEEEEeccCCCChhhHHHHHhCCcc
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
.-.++|+|+.|+|||||++.|.|..+
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 33699999999999999999996443
No 486
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=88.52 E-value=0.19 Score=50.52 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.4
Q ss_pred CCCEEEEeccCCCChhhHHHHHh
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLL 116 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Ll 116 (468)
..++.+|+|++|+||||++.+|.
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999863
No 487
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.52 E-value=0.18 Score=49.85 Aligned_cols=22 Identities=41% Similarity=0.532 Sum_probs=20.0
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.+++.|++|+||||+++++.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999875
No 488
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.37 E-value=0.2 Score=52.93 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=19.2
Q ss_pred CCCEEEEeccCCCChhhHHHHH
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYL 115 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~L 115 (468)
+.-+++|+|++|+|||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 3347999999999999999994
No 489
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=88.37 E-value=0.18 Score=59.13 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.9
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.++++|++|+|||||++.|+|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
No 490
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=88.26 E-value=0.43 Score=44.00 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=43.7
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC-CcEEEEEeCCCCCC
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE-YQTRIILNKADQVK 261 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~-~~iiiVlNK~D~v~ 261 (468)
..++|||||+.... .+...+..+|.+++++.++... -.....+++.+...+ ..+.+|+|+++...
T Consensus 112 yD~viiD~~~~~~~------------~~~~~~~~ad~vi~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 112 FDFILIDCPAGLQL------------DAMSAMLSGEEALLVTNPEISC-LTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp CSEEEEECCSSSSH------------HHHHHHTTCSEEEEEECSCHHH-HHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred CCEEEEECCCCcCH------------HHHHHHHHCCeEEEEecCCccc-HHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 57999999986542 1344578899999999886521 123445566665544 35678999998653
No 491
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.21 E-value=0.47 Score=47.83 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=32.3
Q ss_pred hcccCEEEEEEcCCCCCCCHhH-HHHHHHHhcCCCcEEEEEeCCCCCChHH
Q psy13475 215 IDRADIIFLVYDPSKLDVGPET-EAILDQLKGREYQTRIILNKADQVKPEE 264 (468)
Q Consensus 215 ~~~aDlIllV~Da~~~~i~~e~-~~ll~~l~~~~~~iiiVlNK~D~v~~~e 264 (468)
+.++|.|++|+ +.....+... .+++-.....+.+.++|+||+|+.+.++
T Consensus 128 ~anvD~v~iv~-a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~ 177 (358)
T 2rcn_A 128 AANIDQIVIVS-AILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEG 177 (358)
T ss_dssp EECCCEEEEEE-ESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHH
T ss_pred HhcCCEEEEEE-eCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchh
Confidence 78999999775 4444444432 2333333344678899999999997654
No 492
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.18 E-value=0.13 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.6
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.|+|+|.+|+|||||.+.|.+.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 5999999999999999999885
No 493
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.17 E-value=0.25 Score=45.94 Aligned_cols=24 Identities=29% Similarity=0.171 Sum_probs=21.2
Q ss_pred EEEEeccCCCChhhHHHHHhCCcc
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDNEY 120 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~~~ 120 (468)
.|+|+|++++|||||...|..+-.
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 499999999999999999987643
No 494
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.16 E-value=0.2 Score=48.90 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=19.9
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.++|.|++|+|||||++++.+.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999764
No 495
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.94 E-value=0.26 Score=46.48 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=18.1
Q ss_pred CCCEEEEeccCCCChhhHHHHHhCC
Q psy13475 94 SKPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 94 ~~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+..+|+|.|.+|+||||+++.|...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3446999999999999999998653
No 496
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.77 E-value=0.25 Score=42.48 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.6
Q ss_pred EEEEeccCCCChhhHHHHHhCC
Q psy13475 97 LVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 97 ~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
-|++.|++|+|||++..+|...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999654
No 497
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.69 E-value=0.28 Score=49.18 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.9
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+.|+|+|++++|||||-..|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 498
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=87.59 E-value=0.4 Score=45.06 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=42.9
Q ss_pred cceEEEeCCCCchhhhhhhhccchhHHHHHhhcccCEEEEEEcCCCCCCCHhHHHHHHHHhcCC-CcEEEEEeCCCCCCh
Q psy13475 184 EKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGRE-YQTRIILNKADQVKP 262 (468)
Q Consensus 184 ~~i~lIDTPGi~~~~~~~~r~~d~~~~~~~~~~~aDlIllV~Da~~~~i~~e~~~ll~~l~~~~-~~iiiVlNK~D~v~~ 262 (468)
..++|||||+.... .+...+..+|.+++++.++... -.....+++.+...+ ..+.+|+|++|....
T Consensus 111 yD~viiD~~~~~~~------------~~~~~~~~ad~vi~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~~ 177 (263)
T 1hyq_A 111 TDILLLDAPAGLER------------SAVIAIAAAQELLLVVNPEISS-ITDGLKTKIVAERLGTKVLGVVVNRITTLGI 177 (263)
T ss_dssp CSEEEEECCSSSSH------------HHHHHHHHSSEEEEEECSSHHH-HHHHHHHHHHHHHHTCEEEEEEEEEECTTTH
T ss_pred CCEEEEeCCCCCCh------------HHHHHHHHCCEEEEEeCCChhH-HHHHHHHHHHHHhcCCCeeEEEEccCCcccc
Confidence 57999999975442 1334467899999999876421 123344555555433 456689999987543
No 499
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.53 E-value=0.24 Score=48.48 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.5
Q ss_pred CEEEEeccCCCChhhHHHHHhCC
Q psy13475 96 PLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 96 p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
+.+++.|++|+||||+++++.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 44999999999999999999775
No 500
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=87.48 E-value=0.23 Score=49.05 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.9
Q ss_pred CCEEEEeccCCCChhhHHHHHhCC
Q psy13475 95 KPLVLFMGPWSGGKSSIINYLLDN 118 (468)
Q Consensus 95 ~p~V~ivG~~n~GKSTLIN~Llg~ 118 (468)
.+.++|.|++|+||||+++++...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999764
Done!