RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13475
(468 letters)
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 63.4 bits (153), Expect = 1e-11
Identities = 32/251 (12%), Positives = 72/251 (28%), Gaps = 28/251 (11%)
Query: 85 RHFADPEIFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGES 144
P + +G S GKSS++ + ++ L G+ +L S
Sbjct: 16 SAIGQNADLDLPQIAVVGGQSAGKSSVLENFV----GRDFLPRGSGIVTRRPLVLQLVNS 71
Query: 145 PTI--------------LDGTQLAADWTFSGLQKFGQGLLDRLRGLQLPHPLLEKINIVE 190
T + +L + + +G+ L++ P + + +V+
Sbjct: 72 TTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVD 131
Query: 191 IPGILEIRKQVERQFPF---NDACQWFIDRADIIFLVYDPSKLDVG-PETEAILDQLKGR 246
+PG+ ++ + D F+ + + + L P+ D+ + I ++ +
Sbjct: 132 LPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ 191
Query: 247 EYQTRIILNKADQVKPEELMRVQGTLIWNISPLMSSSEPPVMYSTSLWSNPYEVGAPIRL 306
+T ++ K D + R
Sbjct: 192 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAA----- 246
Query: 307 LQAQEHAFLRD 317
A E F
Sbjct: 247 -LAAERKFFLS 256
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 58.7 bits (141), Expect = 4e-10
Identities = 30/200 (15%), Positives = 71/200 (35%), Gaps = 30/200 (15%)
Query: 91 EIFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDG 150
+ P ++ +G S GKSS++ ++ ++ L G+ IL P DG
Sbjct: 20 DPLDLPQIVVVGSQSSGKSSVLENIV----GRDFLPRGSGIVTRRPLILQLTHLPIADDG 75
Query: 151 TQLAADWTFS----------------------GLQKFGQGLLDRLRGLQLPHPLLEKINI 188
+Q F + +G+ + L++ P + + +
Sbjct: 76 SQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTL 135
Query: 189 VEIPGILEIRKQ---VERQFPFNDACQWFIDRADIIFLVYDPSKLDVG-PETEAILDQLK 244
V++PGI ++ + + +I + + I + P+ D+ + + ++
Sbjct: 136 VDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD 195
Query: 245 GREYQTRIILNKADQVKPEE 264
+T ++ K D +
Sbjct: 196 PEGKRTIGVITKLDLMDKGT 215
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 33.1 bits (74), Expect = 0.045
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 95 KPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAE 130
+P ++ GP + GK+S++ L + +
Sbjct: 3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL 38
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 30.8 bits (68), Expect = 0.19
Identities = 5/30 (16%), Positives = 17/30 (56%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRT 127
+ +G GK++ +N + +++++ + T
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQFNEDMIPT 34
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 31.1 bits (69), Expect = 0.22
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQN 123
VLF+G GK+ + LL +Y
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDT 28
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 30.1 bits (66), Expect = 0.31
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTG 128
+L +G GK++I+ L E G
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEVVTTIPTIG 38
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 30.1 bits (66), Expect = 0.34
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRT 127
V+ +G GK+S++N ++ ++S T
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYKAT 34
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 30.0 bits (66), Expect = 0.36
Identities = 16/61 (26%), Positives = 25/61 (40%)
Query: 90 PEIFSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILD 149
PEI V +G + GKS++ N +L+ E + S G P + G +D
Sbjct: 3 PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVD 62
Query: 150 G 150
Sbjct: 63 T 63
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 30.2 bits (67), Expect = 0.37
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQN-SLRTGAEPSPAYFNILSWGESPTILD 149
+L +G GKSS++ D+ + + G + ++ I D
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWD 62
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 30.0 bits (66), Expect = 0.42
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRT 127
V+ +G GK+S+++ ++++YSQ T
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKAT 34
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 29.6 bits (65), Expect = 0.43
Identities = 4/46 (8%), Positives = 13/46 (28%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGE 143
++ +G + GK+ + + + T +
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER 50
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 29.6 bits (65), Expect = 0.45
Identities = 12/59 (20%), Positives = 28/59 (47%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAAD 156
++ +G + GKS+++N LL+ + + + G I+ G I+D + ++
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 29.6 bits (65), Expect = 0.50
Identities = 6/33 (18%), Positives = 18/33 (54%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAE 130
++ +G GK+++++ + + +N + T E
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE 37
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 30.1 bits (67), Expect = 0.60
Identities = 44/298 (14%), Positives = 77/298 (25%), Gaps = 68/298 (22%)
Query: 60 KELKRLYDNAIKPLEITYKYRDL----SNRHFADPEIFSKPL-VLFMGPWSGGKSSIINY 114
K + + +E+ + ++ S A EI S L V G GKSS IN
Sbjct: 16 TGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINT 75
Query: 115 LLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQLAADWTFSGLQKFGQGLLDRLR 174
L + GA + G ++
Sbjct: 76 LR----GIGNEEEGAAKT---------GVVEVTMERH----------------------- 99
Query: 175 GLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGP 234
HP + + ++PGI + D ++
Sbjct: 100 --PYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKM-----KFYEYDFFIIISAT---RFKK 149
Query: 235 ETEAILDQLKGREYQTRIILNKADQVKPEELMRVQGTL------------IWNISPLMSS 282
I + + + + K D E T N
Sbjct: 150 NDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 209
Query: 283 SEPPVMYSTSLWSNPYEVGAPIRLLQ-----AQEHAFLRDLRNAIDKRVENKIASARR 335
+EPP+ ++ Y+ + L + H F+ L N D +E K ++
Sbjct: 210 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQ 267
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 29.3 bits (64), Expect = 0.70
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQ 122
+LF+G + GK+++++ L ++ +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLAT 27
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.2 bits (64), Expect = 0.74
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRT 127
V G GKSS++ + + ++ + T
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRESYIPT 34
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 29.1 bits (64), Expect = 0.85
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRT-GAEPSPAYFNILSWGESPTILD 149
+L +G GKS ++ D+ Y+ + + T G + + I D
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 28.8 bits (63), Expect = 0.86
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRT 127
++F+G S GK+S+I + + + T
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQAT 32
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 28.8 bits (63), Expect = 0.88
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRT 127
V+ +G GKSS++N + N++ T
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHT 38
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.6 bits (63), Expect = 0.92
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRT-GAEPSPAYFNILSWGESPTILD 149
+L +G GKS ++ ++++++ + + T G + +I I D
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWD 57
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 28.8 bits (63), Expect = 0.93
Identities = 5/33 (15%), Positives = 17/33 (51%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAE 130
++ +G + GK+ ++ +++ + + T E
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE 37
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 28.9 bits (63), Expect = 0.95
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQN 123
+L +G + GK++I+ L E
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTT 28
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 28.9 bits (64), Expect = 1.1
Identities = 15/98 (15%), Positives = 24/98 (24%), Gaps = 11/98 (11%)
Query: 56 ETTLKELKRLYDNAIKPLEITYKYRDLSNRHFADPEIFSKPLVLFMGPWSGGKSSIINYL 115
E L++++ L + I E + G GKSS++N +
Sbjct: 56 EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAI 115
Query: 116 LDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGTQL 153
LR QL
Sbjct: 116 NPGL----KLRVSE-------VSEKLQRGRHTTTTAQL 142
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 28.7 bits (63), Expect = 1.1
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRT 127
+L +G GK++ + DN+++ + T
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITT 37
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 28.5 bits (62), Expect = 1.1
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQN 123
++ +G + GKSS+I ++++
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKD 30
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 28.8 bits (63), Expect = 1.1
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRT 127
+ +G + GK+ ++ N++ + T
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPT 35
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 28.4 bits (62), Expect = 1.2
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 94 SKPL--VLFMGPWSGGKSSIINYLLDNEYSQN 123
S L V+ +G GKS++ + +E+ ++
Sbjct: 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVED 32
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 28.5 bits (62), Expect = 1.3
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQ 122
+L +G + GK++I+ +
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDT 29
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 28.4 bits (62), Expect = 1.4
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTG 128
+ +G GKSS+I+ L Y
Sbjct: 8 LGVLGDARSGKSSLIHRFLTGSYQVLEKTES 38
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.2 bits (62), Expect = 1.4
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRT 127
++ +G GK+ ++ + T
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGAT 37
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 28.4 bits (62), Expect = 1.4
Identities = 4/30 (13%), Positives = 15/30 (50%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRT 127
+ +G + GK+ ++ ++ + + + T
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAFPEEYVPT 41
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.1 bits (61), Expect = 1.4
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRT 127
+ G GKS+++ L + T
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIWEYDPT 34
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.3 bits (62), Expect = 1.6
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGE 143
+ +G GKS ++ D + T A + +
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQ 51
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 28.2 bits (62), Expect = 1.6
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRT 127
+L +G GK+ ++ ++ ++ + T
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFIST 38
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.2 bits (61), Expect = 1.6
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGA 129
VL +G GKS++ E + G
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGH 35
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 28.0 bits (61), Expect = 1.7
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNS 124
++ +G GKS++ L+ N +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEY 32
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.0 bits (61), Expect = 1.9
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQN 123
V+ +G GKS++ + + +
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIEK 31
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 28.0 bits (61), Expect = 2.0
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNS 124
V+ +G + GK++I+ NE S
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHTS 44
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 27.9 bits (61), Expect = 2.0
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSL-RTGAEPSPAYFNILSWGESPTILD 149
+L +G S GK+S + D+ ++ + G + I D
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 27.7 bits (60), Expect = 2.0
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQN 123
++ +G + GKSSI+ + N++++N
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAEN 31
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.7 bits (60), Expect = 2.1
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQN 123
++ +G GK++ + L E+ +
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKK 31
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 27.6 bits (60), Expect = 2.1
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTG 128
+L +G + GK++++ L + S + G
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQG 49
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 28.3 bits (61), Expect = 2.2
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 85 RHFADPEI-FSKPLVLFMGPWSGGKSSIINYLLDNEYSQNSLRT 127
R +D + F + + L +G GKSS+++ +L Y ++
Sbjct: 12 RSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKD 55
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 27.6 bits (60), Expect = 2.2
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNS 124
L +G GKS +++ ++ ++ +S
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDS 34
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 27.5 bits (60), Expect = 2.3
Identities = 6/50 (12%), Positives = 16/50 (32%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTI 147
V+ +G GK+ ++ D + + + + G +
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKL 58
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 27.4 bits (59), Expect = 2.4
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQN 123
+ +G S GKSS+ ++ ++ +
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQFVDS 32
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 27.5 bits (60), Expect = 2.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNS 124
V+ +G GKS++++ NE++ S
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLES 33
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 27.7 bits (60), Expect = 2.5
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQN 123
V +G GKSSI+ +++ + N
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPN 32
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.3 bits (59), Expect = 2.5
Identities = 8/54 (14%), Positives = 19/54 (35%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILDGT 151
++ +G + GKSS++ + ++ + T L + T
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 62
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 27.2 bits (59), Expect = 2.7
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNS 124
V+ +G GK+S++ +N+++
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKH 32
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 27.4 bits (59), Expect = 2.8
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILD 149
V+ G + GKSS++N L E + + G +I G I+D
Sbjct: 4 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIID 55
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.0 bits (61), Expect = 2.8
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 13/64 (20%)
Query: 57 TTLKELKRLYDNAIKPLEI--TYKYRDLSNRHFADPEIFSKPLVLFMGPWSGGKSSIINY 114
+ +LKR+ K + + RD RH +L G GKS ++
Sbjct: 21 VSGGKLKRMTREKAKQVTVAGVPMPRDAEPRH-----------LLVNGATGTGKSVLLRE 69
Query: 115 LLDN 118
L
Sbjct: 70 LAYT 73
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 27.3 bits (59), Expect = 2.8
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNS 124
++ +G GKS++ + + +
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKY 32
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 27.2 bits (59), Expect = 3.0
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSW 141
+L +G + GK++I+ L + G + + +
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKF 58
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 27.0 bits (58), Expect = 3.2
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSW 141
VL +G + GKS++ N L+ + + G P + +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY 46
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.3 bits (59), Expect = 3.3
Identities = 4/26 (15%), Positives = 13/26 (50%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQN 123
++ +G GKS++ + + + +
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVSD 34
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 27.4 bits (59), Expect = 3.3
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQN 123
++F+G + GK+++++ L D+ Q+
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQH 41
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.9 bits (58), Expect = 3.8
Identities = 4/26 (15%), Positives = 13/26 (50%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQN 123
++ +G GKS++ + + + +
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVTD 33
>d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein
MTH1747 {Archaeon Methanobacterium thermoautotrophicum
[TaxId: 145262]}
Length = 112
Score = 25.9 bits (57), Expect = 4.4
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 305 RLLQAQEHAFLRDLRNAIDKRVENKIASARRFAVRVRNHAKMVD 348
+L+ E+ D R + R+++ ARR ++ M+
Sbjct: 36 DVLEMLEYTEGNDFRESAISRLKSSCIHARRRYEEMKEVQDMLA 79
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 26.9 bits (58), Expect = 4.5
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQN 123
+ +G + GK+ ++ N +
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGE 33
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 26.6 bits (57), Expect = 4.6
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNS 124
V+ +G GKS++ N S +S
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDS 32
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 171
Score = 26.7 bits (58), Expect = 4.8
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 38 LKLDEEFKEEEELLAKTIETTLKELKRLYDNAIKPLE 74
L + E + + + LK++ ++ + LE
Sbjct: 141 SPLSAD---ELKKMQDSAA----TLKKVLNDGLAELE 170
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 26.3 bits (58), Expect = 5.1
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 10 IAQRLQTQKQEDIEIPDNLRDKRHVHGILKLDEEFKEEEELLAKTIET 57
I +RL K+ + + ++ V ++K ++ + + L K I T
Sbjct: 5 IVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKK-TGQLDELEKAITT 51
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 26.6 bits (57), Expect = 5.2
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 96 PLVLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSW 141
V +G + GKS+++N LL + + S R +
Sbjct: 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG 51
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.5 bits (57), Expect = 5.7
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNS 124
++ +G GKS++ + +
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDY 33
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.4 bits (57), Expect = 5.9
Identities = 4/26 (15%), Positives = 13/26 (50%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQN 123
+ +G GKS +++ + ++ +
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMAD 32
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 26.7 bits (57), Expect = 5.9
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 95 KPLVLFMGPWSGGKSSIINYLLDNEY 120
V F G + GKSS +N L + +
Sbjct: 16 GIEVAFAGRSNAGKSSALNTLTNQKS 41
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 25.9 bits (57), Expect = 6.1
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 38 LKLDEEFKEEEELL---AKTIETTLKELKRLYDNAIKPLEITYKYRDLSNR--HFADPEI 92
L +EF+ E LL + K+ ++ + E+ K + + R F + E
Sbjct: 7 LIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRET 66
Query: 93 F 93
Sbjct: 67 I 67
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 26.5 bits (57), Expect = 6.2
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAE 130
+L +G GK++I+ L E G
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN 52
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 26.4 bits (57), Expect = 6.4
Identities = 34/216 (15%), Positives = 68/216 (31%), Gaps = 34/216 (15%)
Query: 96 PLVLFMGPWSGGKSSIINYLLD-----------NEYSQNSLRTGAEPSPAYFNI-LSWGE 143
+ L G GK++++ ++L+ NE+ + S+ A L+ G
Sbjct: 4 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGC 63
Query: 144 SPTILDGTQLAADWTFSGLQKFGQGLLDRL--------------RGLQLPHPLLEKINIV 189
A G DRL + L ++ +
Sbjct: 64 ICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLD 123
Query: 190 EIPGILEIRKQVERQFPFNDACQWFIDRADIIFLVYDPSKLDVGPETEAILDQLKGREYQ 249
+ +++ E+ F A + AD I L +K DV E E + ++L +
Sbjct: 124 GVIALVDAVHADEQMNQFTIAQS-QVGYADRILL----TKTDVAGEAEKLHERLARINAR 178
Query: 250 TRIILNKADQVKPEELMRVQGTLIWNISPLMSSSEP 285
+ + L T + + + S++P
Sbjct: 179 APVYTVTHGDIDLGLLF---NTNGFMLEENVVSTKP 211
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 26.4 bits (57), Expect = 7.0
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 94 SKPLVLFMGPWSGGKSSIINYLLD 117
K LVL +G G+ I N L+
Sbjct: 3 RKTLVL-LGAHGVGRRHIKNTLIT 25
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 25.9 bits (56), Expect = 8.8
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYS 121
+L +G GKS+I+ +
Sbjct: 9 LLLLGAGESGKSTIVKQMRILHVV 32
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 25.8 bits (55), Expect = 9.0
Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 8/149 (5%)
Query: 98 VLFMGPWSGGKSSIINYLLDNEYSQNSLRTGAEPSPAYFNILSWGESPTILD--GTQLAA 155
++F G + GKS++I L + +R G P I ++ I+D G
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKK-----VRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMM 57
Query: 156 DWTFSGLQKFGQGLLDRLRGLQLPHPLLEKINIVEIPGILEIRKQVERQFPFNDACQWFI 215
++ ++ + + + + + R + + P + F+
Sbjct: 58 GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 117
Query: 216 DRADIIFLVYDPSKLDVGPETEAILDQLK 244
DI +V KLD + +++ L
Sbjct: 118 RELDIPTIVAVN-KLDKIKNVQEVINFLA 145
>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus
casei [TaxId: 1582]}
Length = 172
Score = 25.9 bits (56), Expect = 9.0
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 38 LKLDEEFKEEEELLAKTIETTLKELKRLYDNAIKPLEI 75
+ L + EEE + K+ +LK++ +A +I
Sbjct: 142 IPLTDH---EEESMQKSAS----QLKKVLTDAFAKNDI 172
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 25.9 bits (55), Expect = 9.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 96 PLVLFMGPWSGGKSSIINYLLDNE 119
P + G + GKSS IN L++ +
Sbjct: 24 PEIALAGRSNVGKSSFINSLINRK 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.406
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,844,376
Number of extensions: 93545
Number of successful extensions: 433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 88
Length of query: 468
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 379
Effective length of database: 1,185,626
Effective search space: 449352254
Effective search space used: 449352254
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (26.0 bits)