BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13476
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6IE24|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus
norvegicus GN=Usp54 PE=2 SV=2
Length = 1588
Score = 166 bits (421), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 115/166 (69%), Gaps = 11/166 (6%)
Query: 18 QMVHYVSASALTAQA----RQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRT 73
QMVHY+S ++L QA + PS P +FG+LL+ A MGD+RDCPS CG +I+IRR
Sbjct: 180 QMVHYISTTSLCNQAICMLEKREKPS-PGMFGELLQNASTMGDLRDCPSNCGERIRIRRV 238
Query: 74 LMNRPEIVSVGVVWDSDRPSL-EHIMAVLGTLRTSLRLSDVF-HGCDNAAASTPLHQLVG 131
LMN P+I+++G+VWDSD L E ++ LGT L+L D+F D+ A + L+ LVG
Sbjct: 239 LMNAPQIITIGLVWDSDHSDLAEDVIHSLGTC---LKLGDLFFRVTDDRAKQSELY-LVG 294
Query: 132 VVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG 177
++ YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+ + + G
Sbjct: 295 MICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340
>sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens
GN=USP54 PE=1 SV=4
Length = 1684
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 115/166 (69%), Gaps = 11/166 (6%)
Query: 18 QMVHYVSASALTAQA----RQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRT 73
QMVHY+S ++L QA + PS P +FG+LL+ A MGD+R+CPS CG +I+IRR
Sbjct: 180 QMVHYISTTSLCNQAICMLERREKPS-PSMFGELLQNASTMGDLRNCPSNCGERIRIRRV 238
Query: 74 LMNRPEIVSVGVVWDSDRPSL-EHIMAVLGTLRTSLRLSDVF-HGCDNAAASTPLHQLVG 131
LMN P+I+++G+VWDSD L E ++ LGT L+L D+F D+ A + L+ LVG
Sbjct: 239 LMNAPQIITIGLVWDSDHSDLAEDVIHSLGTC---LKLGDLFFRVTDDRAKQSELY-LVG 294
Query: 132 VVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG 177
++ YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+ + + G
Sbjct: 295 MICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340
>sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus
GN=Usp54 PE=1 SV=2
Length = 1588
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 115/166 (69%), Gaps = 11/166 (6%)
Query: 18 QMVHYVSASALTAQA----RQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRT 73
QMVHY+S +AL QA + PS P +FG+LL+ A MGD+R+CPS CG +I+IRR
Sbjct: 180 QMVHYISTTALCNQAICMLEKREKPS-PSMFGELLQNASTMGDLRNCPSNCGERIRIRRV 238
Query: 74 LMNRPEIVSVGVVWDSDRPSL-EHIMAVLGTLRTSLRLSDVF-HGCDNAAASTPLHQLVG 131
LMN P+I+++G+VWDS+ L E ++ LGT L+L D+F D+ A + L+ LVG
Sbjct: 239 LMNAPQIITIGLVWDSEHSDLAEDVIHSLGTC---LKLGDLFFRVTDDRAKQSELY-LVG 294
Query: 132 VVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFLSG 177
++ YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+ + + G
Sbjct: 295 MICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWKDVVTKCIKG 340
>sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens
GN=USP53 PE=2 SV=2
Length = 1073
Score = 132 bits (332), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 91/157 (57%), Gaps = 5/157 (3%)
Query: 18 QMVHYVSASALTAQARQSTTPSH---PDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTL 74
+ V Y+S +AL + + P++F +LL+ A D R CPS CG KI+IRR L
Sbjct: 179 EFVRYISTTALCNEVERMLERHERFKPEMFAELLQAANTTDDYRKCPSNCGQKIKIRRVL 238
Query: 75 MNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGCDNAAASTPLHQLVGVVT 134
MN PEIV++G+VWDS+ L AV+ L T L L +F+ + A LVG++
Sbjct: 239 MNCPEIVTIGLVWDSEHSDLTE--AVVRNLATHLYLPGLFYRVTDENAKNSELNLVGMIC 296
Query: 135 YYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171
Y +HY F FHTK W++FDDA V+E+G RW+ +
Sbjct: 297 YTSQHYCAFAFHTKSSKWVFFDDANVKEIGTRWKDVV 333
>sp|P15975|UBP53_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus
GN=Usp53 PE=2 SV=2
Length = 1069
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Query: 18 QMVHYVSASALTAQARQSTTPSH---PDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTL 74
++V Y+S +AL + + P++F +LL+ A D R CPS CG KI+IRR L
Sbjct: 179 ELVRYISTTALCNEVERMMERHERVKPEMFAELLQAANTADDYRKCPSNCGQKIKIRRVL 238
Query: 75 MNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHG-CDNAAASTPLHQLVGVV 133
MN PEIV++G+VWDS+ L V+ +L T L L +F+ D A + LH LVG++
Sbjct: 239 MNCPEIVTIGLVWDSEHSDL--TEDVVRSLATHLYLPGLFYRVTDENATDSELH-LVGMI 295
Query: 134 TYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171
Y +HY F FHTK W++FDDA V+E+G RW+ +
Sbjct: 296 CYTSRHYCAFAFHTKSSKWVFFDDAHVKEMGTRWKDVV 333
>sp|Q6FQF0|UBP4_CANGA Ubiquitin carboxyl-terminal hydrolase 4 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DOA4 PE=3 SV=1
Length = 887
Score = 34.3 bits (77), Expect = 0.46, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 134 TYYGKHYSTFFFHTKLKVWIYFDDATVREV 163
T YG HY+++ K WIYFDD R V
Sbjct: 837 TLYGGHYTSYVDKGPEKGWIYFDDTVYRPV 866
>sp|Q6P8X6|UBP50_MOUSE Putative ubiquitin carboxyl-terminal hydrolase 50 OS=Mus musculus
GN=Usp50 PE=2 SV=1
Length = 390
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 125 PLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFFL 175
P++ L VV ++G HY+ F ++ + W FDD V E+ QT +L
Sbjct: 303 PMYNLCAVVNHFGDLDGGHYTAFCKNSVTQAWYSFDDTRVSEIPDTSVQTATAYL 357
>sp|A6W5U4|RS3_KINRD 30S ribosomal protein S3 OS=Kineococcus radiotolerans (strain ATCC
BAA-149 / DSM 14245 / SRS30216) GN=rpsC PE=3 SV=1
Length = 282
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 125 PLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREV 163
PLH L + Y T F +KVWIY D T RE+
Sbjct: 178 PLHTLRANIDYGFYEARTTFGRIGVKVWIYHGDITSREL 216
>sp|P39944|UBP5_YEAST Ubiquitin carboxyl-terminal hydrolase 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP5 PE=1 SV=1
Length = 805
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 127 HQLVGVVTY----YGKHYSTFFFHTKLKVWIYFDDATVREV 163
++L GV + YG HY+++ + K W +FDD+ R +
Sbjct: 745 YRLYGVACHSGSLYGGHYTSYVYKGPKKGWYFFDDSLYRPI 785
>sp|P32571|UBP4_YEAST Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DOA4 PE=1 SV=2
Length = 926
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 127 HQLVGVV----TYYGKHYSTFFFHTKLKVWIYFDDATVREV 163
++L GV T YG HY+ + K W+YFDD + V
Sbjct: 864 YELYGVACHFGTLYGGHYTAYVKKGLKKGWLYFDDTKYKPV 904
>sp|A6ZY34|UBP4_YEAS7 Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain YJM789) GN=DOA4 PE=3 SV=1
Length = 926
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 127 HQLVGVV----TYYGKHYSTFFFHTKLKVWIYFDDATVREV 163
++L GV T YG HY+ + K W+YFDD + V
Sbjct: 864 YELYGVACHFGTLYGGHYTAYVKKGLKKGWLYFDDTKYKPV 904
>sp|B3LGK1|UBP4_YEAS1 Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=DOA4 PE=3 SV=1
Length = 926
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 127 HQLVGVV----TYYGKHYSTFFFHTKLKVWIYFDDATVREV 163
++L GV T YG HY+ + K W+YFDD + V
Sbjct: 864 YELYGVACHFGTLYGGHYTAYVKKGLKKGWLYFDDTKYKPV 904
>sp|P39538|UBP12_YEAST Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP12 PE=1 SV=1
Length = 1254
Score = 30.0 bits (66), Expect = 9.1, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 53 GMGDIRDCPSACGAKIQIRRT--LMNRPEIVSVGVV-WDSDRPSLEHIMAVLGTLRTSLR 109
G+ D CP+ C Q + L N P+I+ + + ++S R + I A + T L
Sbjct: 978 GLTDSWYCPT-CKEHRQATKQIQLWNTPDILLIHLKRFESQRSFSDKIDATVNFPITDLD 1036
Query: 110 LSDVFHGCDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGP 165
LS D+ ++ L V +YG HY+ + + W YFDD+ V E P
Sbjct: 1037 LSRYVVYKDDPRGL--IYDLYAVDNHYGGLGGGHYTAYVKNFADNKWYYFDDSRVTETAP 1094
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,851,992
Number of Sequences: 539616
Number of extensions: 2521032
Number of successful extensions: 5767
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5745
Number of HSP's gapped (non-prelim): 16
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)