Query psy13476
Match_columns 177
No_of_seqs 140 out of 197
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 20:22:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 99.7 6.9E-18 2.4E-22 144.9 6.3 125 41-171 210-346 (367)
2 3nhe_A Ubiquitin carboxyl-term 99.7 8.3E-18 2.8E-22 141.7 5.7 123 42-171 196-330 (348)
3 3i3t_A Ubiquitin carboxyl-term 99.7 2.4E-17 8.1E-22 139.2 6.9 123 41-172 205-339 (355)
4 2gfo_A Ubiquitin carboxyl-term 99.7 6.1E-17 2.1E-21 141.4 6.8 124 42-171 248-383 (396)
5 1nb8_A Ubiquitin carboxyl-term 99.7 8.3E-17 2.9E-21 138.3 7.1 128 41-174 150-290 (353)
6 2ayn_A Ubiquitin carboxyl-term 99.6 1.3E-15 4.3E-20 131.7 6.9 127 42-173 194-376 (404)
7 1vjv_A Ubiquitin carboxyl-term 99.6 1.3E-15 4.6E-20 132.7 6.4 128 42-173 186-396 (415)
8 2f1z_A Ubiquitin carboxyl-term 99.6 1.2E-15 4.1E-20 137.5 6.3 126 41-172 319-457 (522)
9 3mhs_A Ubiquitin carboxyl-term 99.5 3.2E-15 1.1E-19 132.6 5.1 128 40-172 317-462 (476)
10 3ihp_A Ubiquitin carboxyl-term 99.1 1.7E-11 6E-16 117.0 4.5 37 126-164 796-837 (854)
11 2vhf_A Ubiquitin carboxyl-term 97.6 5.7E-05 1.9E-09 66.1 5.1 34 124-157 274-308 (374)
12 4ekf_A Adenain; alpha and beta 56.0 12 0.00041 29.7 4.0 61 95-156 6-71 (204)
13 3ijm_A Uncharacterized restric 53.5 5.1 0.00017 30.3 1.4 30 142-172 113-144 (151)
14 2ww6_A Fibritin, T4 fibritin; 35.2 15 0.0005 19.9 1.1 14 142-157 12-25 (27)
15 3o65_A Putative ataxin-3-like 31.7 36 0.0012 26.8 3.2 35 128-164 109-145 (191)
16 2lo3_A SAGA-associated factor 26.6 15 0.0005 22.2 0.1 16 54-70 14-29 (44)
17 3ie4_A GRAM-negative binding p 24.9 1.6E+02 0.0056 20.6 5.5 40 125-164 24-71 (107)
18 2jq5_A SEC-C motif; structural 24.3 45 0.0016 24.3 2.5 15 141-157 110-124 (128)
19 2jx1_A Myelin transcription fa 20.4 52 0.0018 18.4 1.6 22 58-79 2-30 (31)
20 3aqy_A Beta-1,3-glucan-binding 20.4 1.9E+02 0.0065 20.2 5.1 34 126-159 26-67 (106)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.71 E-value=6.9e-18 Score=144.86 Aligned_cols=125 Identities=22% Similarity=0.332 Sum_probs=91.8
Q ss_pred CCCHHHHHHhhcCC-----CCCCcCccccCccceee--eeccCCCcEEEEEEE-ECCCCCChHHHHHHHhhcCcccccCc
Q psy13476 41 PDLFGQLLKKAGGM-----GDIRDCPSACGAKIQIR--RTLMNRPEIVSVGVV-WDSDRPSLEHIMAVLGTLRTSLRLSD 112 (177)
Q Consensus 41 ~~sF~~lL~~~~~~-----~~~~~C~~~CG~~~~i~--~~L~~~P~iftI~L~-W~~~~~~~~~i~~~l~~l~~~LDls~ 112 (177)
..++++.|+..-.. .+...|| .|+++.... ..|.++|+||+|+|+ |..+.....++...+.++.+.||++.
T Consensus 210 ~~sL~~~L~~f~~~E~l~~~~~~~C~-~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~ 288 (367)
T 2y6e_A 210 TVALRDCIELFTTMETLGEHDPWYCP-NCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSE 288 (367)
T ss_dssp CEEHHHHHHHHTSCEECCC-CCEEET-TTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGG
T ss_pred CCCHHHHHHHhcccccCCCCCCccCC-CCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhh
Confidence 45899999875311 1245895 999776543 359999999999999 44443333445444544445799988
Q ss_pred cccCCCcccCCCCceeEEEEEEecC----CceEEEEEeccCceEEEEeCCeeeEcCCChHHHH
Q psy13476 113 VFHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171 (177)
Q Consensus 113 ~~~~~~~~~~~~~~Y~L~smVcyyG----~HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv 171 (177)
.....+ .....|+|+|||+|+| +||+||+|+..+++|+.|||+.|++|. +++|+
T Consensus 289 ~~~~~~---~~~~~Y~L~avv~H~G~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~--~~~v~ 346 (367)
T 2y6e_A 289 FVCNLS---ARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLAS--EDQIV 346 (367)
T ss_dssp GBSCSS---SCCCEEEEEEEEEEECSSSSCEEEEEEECTTTCCEEEEETTEEEECC--GGGTS
T ss_pred hccCCC---CCCceEEEEEEeecCCCCCCCeeeEEEEcCCCCeEEEECCCCceECC--HHHcC
Confidence 664321 1246899999999998 699999998878999999999999998 68775
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.70 E-value=8.3e-18 Score=141.67 Aligned_cols=123 Identities=14% Similarity=0.205 Sum_probs=90.3
Q ss_pred CCHHHHHHhhcCCC-----CCCcCccccCccceeee--eccCCCcEEEEEEEEC-CCCCChHHHHHHHhhcCcccccCcc
Q psy13476 42 DLFGQLLKKAGGMG-----DIRDCPSACGAKIQIRR--TLMNRPEIVSVGVVWD-SDRPSLEHIMAVLGTLRTSLRLSDV 113 (177)
Q Consensus 42 ~sF~~lL~~~~~~~-----~~~~C~~~CG~~~~i~~--~L~~~P~iftI~L~W~-~~~~~~~~i~~~l~~l~~~LDls~~ 113 (177)
.++.++|+..-... ....|+ .|+++....+ .|.++|+||+|+|++. .+.....++...+.++.+.||++.+
T Consensus 196 ~sl~~~L~~~~~~e~l~~~~~~~C~-~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~ 274 (348)
T 3nhe_A 196 VTLMDCMRLFTKEDVLDGDEKPTCC-RCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREF 274 (348)
T ss_dssp EEHHHHHHHHHSCEEECGGGCCEET-TTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGG
T ss_pred CCHHHHHHHhcCceEecCCCceECC-CCCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhh
Confidence 48999998763211 124784 9987765433 4999999999999944 3332333444445555578999887
Q ss_pred ccCCCcccCCCCceeEEEEEEecCC----ceEEEEEeccCceEEEEeCCeeeEcCCChHHHH
Q psy13476 114 FHGCDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171 (177)
Q Consensus 114 ~~~~~~~~~~~~~Y~L~smVcyyG~----HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv 171 (177)
..... ....|+|+|||+|.|. ||+||+|++..++|+.|||+.|++|. +++|.
T Consensus 275 ~~~~~----~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~--~~~v~ 330 (348)
T 3nhe_A 275 ASENT----NHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMS--SSQVR 330 (348)
T ss_dssp BCTTC----CCCEEEEEEEEEEEECSSCEEEEEEEECTTTCCEEEEETTEEEEEC--GGGTC
T ss_pred cCCCC----CCCcEEEEEEEEccCCCCCcccEEEEccCCCCcEEEEeCCCceECC--HHHcC
Confidence 64321 2367999999999995 99999998889999999999999998 67764
No 3
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.69 E-value=2.4e-17 Score=139.21 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=89.0
Q ss_pred CCCHHHHHHhhcCCC-----CCCcCccccCccceeee--eccCCCcEEEEEEE-ECCCCCChHHHHHHHhhcCcccccCc
Q psy13476 41 PDLFGQLLKKAGGMG-----DIRDCPSACGAKIQIRR--TLMNRPEIVSVGVV-WDSDRPSLEHIMAVLGTLRTSLRLSD 112 (177)
Q Consensus 41 ~~sF~~lL~~~~~~~-----~~~~C~~~CG~~~~i~~--~L~~~P~iftI~L~-W~~~~~~~~~i~~~l~~l~~~LDls~ 112 (177)
..++.++|+...... ....|+ .|+++....+ .|.++|+||+|+|+ |..+.....++...+.++.+.||++.
T Consensus 205 ~~sl~~~L~~~~~~e~l~~~n~~~C~-~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~ 283 (355)
T 3i3t_A 205 KVSLRDCFNLFTKEEELESENAPVCD-RCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGD 283 (355)
T ss_dssp -CBHHHHHHHHHCCEEECGGGCCCCS-SSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGG
T ss_pred ccCHHHHHHHhCCccccCCCCCeeCC-CCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchh
Confidence 459999998763111 126795 9998876543 48899999999999 66554333444444444446789887
Q ss_pred cccCCCcccCCCCceeEEEEEEecC----CceEEEEEeccCceEEEEeCCeeeEcCCChHHHHH
Q psy13476 113 VFHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIF 172 (177)
Q Consensus 113 ~~~~~~~~~~~~~~Y~L~smVcyyG----~HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv~ 172 (177)
+..... ....|+|+|||+|+| +||+||+|. .++|+.|||+.|++|. +++|..
T Consensus 284 ~~~~~~----~~~~Y~L~avv~H~G~~~~GHY~~~~~~--~~~W~~~nD~~V~~v~--~~~v~~ 339 (355)
T 3i3t_A 284 FASDKA----GSPVYQLYALCNHSGSVHYGHYTALCRC--QTGWHVYNDSRVSPVS--ENQVAS 339 (355)
T ss_dssp GBC--------CCEEEEEEEEEEEEETTEEEEEEEEEE--TTEEEEEETTEEEEEC--HHHHHT
T ss_pred hccCCC----CCcceEEEEEEEecCCCCCCeEEEEEEc--CCeEEEEcCCCcEECC--HHHcCC
Confidence 653211 236899999999999 699999995 5679999999999998 788864
No 4
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.66 E-value=6.1e-17 Score=141.36 Aligned_cols=124 Identities=18% Similarity=0.256 Sum_probs=90.2
Q ss_pred CCHHHHHHhhcCC-----CCCCcCccccCccceee--eeccCCCcEEEEEEE-ECCCCCChHHHHHHHhhcCcccccCcc
Q psy13476 42 DLFGQLLKKAGGM-----GDIRDCPSACGAKIQIR--RTLMNRPEIVSVGVV-WDSDRPSLEHIMAVLGTLRTSLRLSDV 113 (177)
Q Consensus 42 ~sF~~lL~~~~~~-----~~~~~C~~~CG~~~~i~--~~L~~~P~iftI~L~-W~~~~~~~~~i~~~l~~l~~~LDls~~ 113 (177)
.++++.|+..-.. .+...|+ .|+++.... ..|.++|+||+|+|+ |..+.....++...+.++.+.|||+..
T Consensus 248 ~sL~~~L~~f~~~E~l~~~n~~~C~-~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~ 326 (396)
T 2gfo_A 248 CTLQDCLRLFSKEEKLTDNNRFYCS-HCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQY 326 (396)
T ss_dssp EEHHHHHHHHTSCEEECSTTCEEET-TTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGG
T ss_pred CCHHHHHHHhCCcccccCCcccccC-CcccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhcccccc
Confidence 4788888876311 1235895 998776443 359999999999999 444432223444444444467999886
Q ss_pred ccCCCcccCCCCceeEEEEEEecC----CceEEEEEeccCceEEEEeCCeeeEcCCChHHHH
Q psy13476 114 FHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTI 171 (177)
Q Consensus 114 ~~~~~~~~~~~~~Y~L~smVcyyG----~HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv 171 (177)
..+.. .....|+|+|||+|+| +||+||+++..+++|+.|||+.|++|. +++|.
T Consensus 327 ~~~~~---~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~--~~~v~ 383 (396)
T 2gfo_A 327 VIGPK---NNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDIS--VSSVK 383 (396)
T ss_dssp BCSCC---SSCCCBEEEEEEEEESCTTTCEEEEEEEETTTTEEEEEETTEEEECC--HHHHS
T ss_pred ccCCC---CCCceEEEEEEEEecCCCCCCceEEEEcCCCCCCEEEEeCCCeEECC--HHHcC
Confidence 64321 1236799999999998 699999998878999999999999998 68875
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.66 E-value=8.3e-17 Score=138.28 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=87.9
Q ss_pred CCCHHHHHHhhcC-----CCCCCcCccccCccceeee-eccCCCcEEEEEEEECC-CCC--ChHHHHHHHhhcCcccccC
Q psy13476 41 PDLFGQLLKKAGG-----MGDIRDCPSACGAKIQIRR-TLMNRPEIVSVGVVWDS-DRP--SLEHIMAVLGTLRTSLRLS 111 (177)
Q Consensus 41 ~~sF~~lL~~~~~-----~~~~~~C~~~CG~~~~i~~-~L~~~P~iftI~L~W~~-~~~--~~~~i~~~l~~l~~~LDls 111 (177)
..++.+.|+..-. ......|+ .|+.....++ .|.++|+||+|+|+... +.. ...++...+ .+|..||++
T Consensus 150 ~~~l~~~L~~~~~~E~l~~~~~~~C~-~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v-~fp~~Ldl~ 227 (353)
T 1nb8_A 150 KKNIFESFVDYVAVEQLDGDNKYDAG-EHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRF-EFPEQLPLD 227 (353)
T ss_dssp CSBHHHHHHHHTCCEEECTTTCEECG-GGCEECEEEEEEESCCCSEEEEEECCCC--------CCCCCCC-BCCSEEECG
T ss_pred CcchHHHHHHhhCccccCCCccccCC-cCccEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEE-ECCCeeehh
Confidence 3567777776321 11134684 7875544443 59999999999999433 321 112232222 346789999
Q ss_pred ccccCCCcccCCCCceeEEEEEEecC----CceEEEEEeccCceEEEEeCCeeeEcCCChHHHHHHH
Q psy13476 112 DVFHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIFFF 174 (177)
Q Consensus 112 ~~~~~~~~~~~~~~~Y~L~smVcyyG----~HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv~~~ 174 (177)
.+....++. ....|+|+|||+|+| +||+||+|+..+++|+.|||+.|++|. |++|+..+
T Consensus 228 ~~~~~~~~~--~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~--~~~v~~~~ 290 (353)
T 1nb8_A 228 EFLQKTDPK--DPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCT--KEEAIEHN 290 (353)
T ss_dssp GGBSSCCTT--SCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEEEETTEEEECC--HHHHTGGG
T ss_pred hhhcccCCC--CCceEEEEEEEEEeCCCCCcEEEEEEecCCCCCEEEEECcceEECC--HHHHHHHh
Confidence 876543222 346899999999999 799999998788999999999999998 79987643
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.59 E-value=1.3e-15 Score=131.74 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=87.4
Q ss_pred CCHHHHHHhhcCCCCCCcCccccCcccee--eeeccCCCcEEEEEEE-ECCCCC--ChHHHHHHHhhcCcccccCccccC
Q psy13476 42 DLFGQLLKKAGGMGDIRDCPSACGAKIQI--RRTLMNRPEIVSVGVV-WDSDRP--SLEHIMAVLGTLRTSLRLSDVFHG 116 (177)
Q Consensus 42 ~sF~~lL~~~~~~~~~~~C~~~CG~~~~i--~~~L~~~P~iftI~L~-W~~~~~--~~~~i~~~l~~l~~~LDls~~~~~ 116 (177)
.++.+.|+..-...-...|+ .||++... +..|.++|+||+|+|+ |..+.. ...+|..-+. +|..|||+.+...
T Consensus 194 ~~l~~~L~~~~~e~l~~~c~-~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~-fP~~Ldl~~~~~~ 271 (404)
T 2ayn_A 194 KYLFTGLKLRLQEEITKQSP-TLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVK-FPLMLDMYELCTP 271 (404)
T ss_dssp CBHHHHHHHTTEECCCCEET-TTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCB-CCSEEECGGGBCH
T ss_pred ccHHHHHHHhcccceeecch-hhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceec-cCceeEHhHhcCh
Confidence 47888887753222235784 89876643 3459999999999999 443322 1122322222 3668999876531
Q ss_pred C--------------------C--------------------------cccCCCCceeEEEEEEecCC-----ceEEEEE
Q psy13476 117 C--------------------D--------------------------NAAASTPLHQLVGVVTYYGK-----HYSTFFF 145 (177)
Q Consensus 117 ~--------------------~--------------------------~~~~~~~~Y~L~smVcyyG~-----HY~af~~ 145 (177)
- + ........|+|+|||+|.|. ||+||+|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~ 351 (404)
T 2ayn_A 272 ELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVK 351 (404)
T ss_dssp HHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEE
T ss_pred hhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEE
Confidence 0 0 00112367999999999994 9999999
Q ss_pred eccCceEEEEeCCeeeEcCCChHHHHHH
Q psy13476 146 HTKLKVWIYFDDATVREVGPRWEQTIFF 173 (177)
Q Consensus 146 ~~~~~~W~~fDDs~V~~vg~~W~~Vv~~ 173 (177)
+ .+++|+.|||+.|++|. |++|+..
T Consensus 352 ~-~~~~W~~fnD~~V~~v~--~~~v~~~ 376 (404)
T 2ayn_A 352 R-KQDEWIKFDDDKVSIVT--PEDILRL 376 (404)
T ss_dssp E-ETTEEEEEBTTBCCCBC--HHHHGGG
T ss_pred C-CCCeEEEeecccceecC--HHHHHhh
Confidence 6 48899999999999998 7988754
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.58 E-value=1.3e-15 Score=132.71 Aligned_cols=128 Identities=19% Similarity=0.268 Sum_probs=81.4
Q ss_pred CCHHHHHHhhcCCCCCCcCccccCcccee--eeeccCCCcEEEEEEE-ECCCCC--ChHHHHHHHhhcCcccccCccccC
Q psy13476 42 DLFGQLLKKAGGMGDIRDCPSACGAKIQI--RRTLMNRPEIVSVGVV-WDSDRP--SLEHIMAVLGTLRTSLRLSDVFHG 116 (177)
Q Consensus 42 ~sF~~lL~~~~~~~~~~~C~~~CG~~~~i--~~~L~~~P~iftI~L~-W~~~~~--~~~~i~~~l~~l~~~LDls~~~~~ 116 (177)
.++.+.|+..-...-...|+ .||++... +..|.++|+||+|+|+ |..+.. ...+|..-+ .+|..|||+.+...
T Consensus 186 ~~l~~~L~~~~~e~i~~~c~-~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V-~FP~~Ldl~~~~~~ 263 (415)
T 1vjv_A 186 NFMRNGLLEGLNEKIEKRSD-LTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKV-VFPFQLDVADMLTP 263 (415)
T ss_dssp CBHHHHHHHHHEEC----------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCC-BCCSEEECGGGBCH
T ss_pred chHHHHHHHHhhhhhhhccc-ccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCcc-CCCcEeEhHHhcCh
Confidence 47777776653222235784 88876643 3459999999999999 433321 112232222 23668998875421
Q ss_pred C------------------------------------------------------------------------CcccCCC
Q psy13476 117 C------------------------------------------------------------------------DNAAAST 124 (177)
Q Consensus 117 ~------------------------------------------------------------------------~~~~~~~ 124 (177)
- +......
T Consensus 264 ~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (415)
T 1vjv_A 264 EYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPS 343 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSS
T ss_pred hhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCC
Confidence 0 0011123
Q ss_pred CceeEEEEEEecCC-----ceEEEEEe-ccCceEEEEeCCeeeEcCCChHHHHHH
Q psy13476 125 PLHQLVGVVTYYGK-----HYSTFFFH-TKLKVWIYFDDATVREVGPRWEQTIFF 173 (177)
Q Consensus 125 ~~Y~L~smVcyyG~-----HY~af~~~-~~~~~W~~fDDs~V~~vg~~W~~Vv~~ 173 (177)
..|+|+|||+|.|. ||+||+|+ ...++|+.|||+.|++|. +++|...
T Consensus 344 ~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~--~~~v~~~ 396 (415)
T 1vjv_A 344 CVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVE--KEKIESL 396 (415)
T ss_dssp SEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEEC--HHHHHGG
T ss_pred ceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcC--HHHHhhh
Confidence 67999999999994 99999997 678999999999999999 7888764
No 8
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=137.49 Aligned_cols=126 Identities=17% Similarity=0.193 Sum_probs=89.0
Q ss_pred CCCHHHHHHhhcC----CC-CCCcCccccCccceeee-eccCCCcEEEEEEE-ECCCC--CChHHHHHHHhhcCcccccC
Q psy13476 41 PDLFGQLLKKAGG----MG-DIRDCPSACGAKIQIRR-TLMNRPEIVSVGVV-WDSDR--PSLEHIMAVLGTLRTSLRLS 111 (177)
Q Consensus 41 ~~sF~~lL~~~~~----~~-~~~~C~~~CG~~~~i~~-~L~~~P~iftI~L~-W~~~~--~~~~~i~~~l~~l~~~LDls 111 (177)
..++.+.|+..-. .+ ....|+ .|+.....++ .|.++|+||+|+|+ +..+. ....++...+ .+|..|||+
T Consensus 319 ~~~l~~~L~~~~~~E~l~~~n~~~C~-~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v-~fp~~Ldl~ 396 (522)
T 2f1z_A 319 KKNIFESFVDYVAVEQLDGDNKYDAG-EHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRF-EFPEQLPLD 396 (522)
T ss_dssp CCBHHHHHHHHTCEEEECTTSCBCCG-GGCSBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCC-BCCSEEECG
T ss_pred cccchHHHHHhhceeecCCcceeecC-cCCccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEE-eCCCeecch
Confidence 3567777765321 11 234684 7876654444 59999999999999 43332 1223343333 345789999
Q ss_pred ccccCCCcccCCCCceeEEEEEEecC----CceEEEEEeccCceEEEEeCCeeeEcCCChHHHHH
Q psy13476 112 DVFHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIF 172 (177)
Q Consensus 112 ~~~~~~~~~~~~~~~Y~L~smVcyyG----~HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv~ 172 (177)
.+....++. ....|+|+|||+|+| +||+||+|+..+++|+.|||+.|++|. |++|+.
T Consensus 397 ~~~~~~~~~--~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~--~~~v~~ 457 (522)
T 2f1z_A 397 EFLQKTDPK--DPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCT--KEEAIE 457 (522)
T ss_dssp GGBSSCCTT--SCCEEEEEEEEEEECSSSCSEEEEEECTTSSSCCEEEETTEEEECC--HHHHST
T ss_pred hhhccccCC--CCcEEEEEEEEEecccCCCceEEEEEecCCCCCEEEEECceeEECC--HHHHHH
Confidence 876543222 346899999999999 699999997788999999999999998 788875
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.54 E-value=3.2e-15 Score=132.57 Aligned_cols=128 Identities=15% Similarity=0.239 Sum_probs=89.1
Q ss_pred CCCCHHHHHHhhcCC----CCCCcCccccCccceee--eeccCCCcEEEEEEE-ECCCC-CChHHHHHHHhhcCcccccC
Q psy13476 40 HPDLFGQLLKKAGGM----GDIRDCPSACGAKIQIR--RTLMNRPEIVSVGVV-WDSDR-PSLEHIMAVLGTLRTSLRLS 111 (177)
Q Consensus 40 ~~~sF~~lL~~~~~~----~~~~~C~~~CG~~~~i~--~~L~~~P~iftI~L~-W~~~~-~~~~~i~~~l~~l~~~LDls 111 (177)
...++.+.|+..-.. +....|+ .|+++.... ..|.++|+||+|+|+ |.... ....++...+ .++..||++
T Consensus 317 ~~~sl~~~L~~~~~~E~l~~~~~~C~-~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V-~fP~~Ldl~ 394 (476)
T 3mhs_A 317 DKKKLYECLDSFHKKEQLKDFNYHCG-ECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFI-EFPTYLNMK 394 (476)
T ss_dssp TCCBHHHHHHHHHCCEECSSCCCEET-TTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCC-BCCSEEECG
T ss_pred hhhHHHHHHHHhcChhhccCCCCcCC-ccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEE-cCCCeeech
Confidence 456899999875311 1236784 898776443 358999999999999 44222 1222333322 346789999
Q ss_pred ccccCCCc------ccCCCCceeEEEEEEecCC----ceEEEEEeccCceEEEEeCCeeeEcCCChHHHHH
Q psy13476 112 DVFHGCDN------AAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQTIF 172 (177)
Q Consensus 112 ~~~~~~~~------~~~~~~~Y~L~smVcyyG~----HY~af~~~~~~~~W~~fDDs~V~~vg~~W~~Vv~ 172 (177)
.+...... .......|+|+|||+|.|. ||+||+|. .+++|+.|||+.|++|. |++|+.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~-~~~~W~~fnD~~V~~v~--~~~v~~ 462 (476)
T 3mhs_A 395 NYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKI-SGGQWFKFNDSMVSSIS--QEEVLK 462 (476)
T ss_dssp GGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEEC-TTSCEEEEETTEEEEEC--HHHHTT
T ss_pred hhcCcccccccccccCCCCCcEEEEEEEEeCCCCCCCceEEEEEC-CCCcEEEEeCCceEECC--HHHhcc
Confidence 87643211 1122356999999999984 99999974 47899999999999998 788864
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.15 E-value=1.7e-11 Score=117.01 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=34.0
Q ss_pred ceeEEEEEEecC-----CceEEEEEeccCceEEEEeCCeeeEcC
Q psy13476 126 LHQLVGVVTYYG-----KHYSTFFFHTKLKVWIYFDDATVREVG 164 (177)
Q Consensus 126 ~Y~L~smVcyyG-----~HY~af~~~~~~~~W~~fDDs~V~~vg 164 (177)
.|.|+|||||.| +||+||++ ++++|+.|||+.|..+.
T Consensus 796 ~Y~L~avi~H~G~~~~~GHY~~~~~--~~~~W~~~nD~~V~~~~ 837 (854)
T 3ihp_A 796 KYQLFAFISHMGTSTMCGHYVCHIK--KEGRWVIYNDQKVCASE 837 (854)
T ss_dssp EEEEEEEEEEESSCSSCCEEEEEEE--ETTEEEEEETTEEEECS
T ss_pred eEEEEEEEEeecCCCCCcCeEEEEE--eCCEEEEEECCeeEEcc
Confidence 699999999999 59999999 47999999999999874
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=97.60 E-value=5.7e-05 Score=66.09 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=29.4
Q ss_pred CCceeEEEEEEecCCceEEEEEe-ccCceEEEEeC
Q psy13476 124 TPLHQLVGVVTYYGKHYSTFFFH-TKLKVWIYFDD 157 (177)
Q Consensus 124 ~~~Y~L~smVcyyG~HY~af~~~-~~~~~W~~fDD 157 (177)
...|.|+||||=.++||+||+|. +++++|+.||.
T Consensus 274 sg~yeL~aVltadsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 274 CQNMELFAVLCIETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp -CCEEEEEEEEEETTEEEEEEECSSSTTCEEEEET
T ss_pred ceeEEEEEEEEccCCceEEEEEecCCCCCeEEEec
Confidence 36799999999888999999996 35899999994
No 12
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=56.00 E-value=12 Score=29.71 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCcccccCccccCCCcccCCCCceeEEEEEEecC-----CceEEEEEeccCceEEEEe
Q psy13476 95 EHIMAVLGTLRTSLRLSDVFHGCDNAAASTPLHQLVGVVTYYG-----KHYSTFFFHTKLKVWIYFD 156 (177)
Q Consensus 95 ~~i~~~l~~l~~~LDls~~~~~~~~~~~~~~~Y~L~smVcyyG-----~HY~af~~~~~~~~W~~fD 156 (177)
.+++.++..|+-.=.+=-.|+.-=|+=-+..+ -=.|+|+-.| -|+.||+++|...+-++||
T Consensus 6 ~EL~~lv~~Lg~~~~FLGtFDkrFPGFl~~~k-~a~AIVNTg~retGGvHWiA~Aw~P~s~~~YmFD 71 (204)
T 4ekf_A 6 QELKAIVKDLGCGPYFLGTYDKRFPGFVSPHK-LACAIVNTAGRETGGVHWMAFAWNPRSKTCYLFE 71 (204)
T ss_dssp HHHHHHHHHTTCGGGEEEEEESSCCSCCCTTS-CEEEEEESCC----CCCEEEEEEETTTTEEEEEC
T ss_pred HHHHHHHHHcCCCCcccccccCCCCCccCCCC-cceeEEecCCcccCceeEEEeEecCCcceEEEeC
Confidence 56777777775432211133211011000011 1345666544 3999999999999999999
No 13
>3ijm_A Uncharacterized restriction endonuclease-like FOL superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily, structural GEN PSI-2; 1.70A {Spirosoma linguale}
Probab=53.52 E-value=5.1 Score=30.25 Aligned_cols=30 Identities=20% Similarity=0.498 Sum_probs=24.1
Q ss_pred EEEEeccCceEEEEe--CCeeeEcCCChHHHHH
Q psy13476 142 TFFFHTKLKVWIYFD--DATVREVGPRWEQTIF 172 (177)
Q Consensus 142 af~~~~~~~~W~~fD--Ds~V~~vg~~W~~Vv~ 172 (177)
.|+|+.+.+.|+.|. |.-+.+-. ||.+|+.
T Consensus 113 GFVynYkt~~W~rYr~g~gg~~~n~-SfSevl~ 144 (151)
T 3ijm_A 113 GFVFNYKTQQWLRYRLGDGGVATNS-SFSEVLQ 144 (151)
T ss_dssp EEEEETTTTEEEEEETTSTTCCBSC-CEETTTT
T ss_pred eeeEeeccCceeEEEcCCCceeccc-cHHHHhc
Confidence 577888999999999 55577777 7998863
No 14
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=35.19 E-value=15 Score=19.93 Aligned_cols=14 Identities=14% Similarity=0.586 Sum_probs=10.9
Q ss_pred EEEEeccCceEEEEeC
Q psy13476 142 TFFFHTKLKVWIYFDD 157 (177)
Q Consensus 142 af~~~~~~~~W~~fDD 157 (177)
+|+| +++.|+..++
T Consensus 12 ~Yvr--~dg~WV~l~t 25 (27)
T 2ww6_A 12 AYVR--KFGEWVLLST 25 (27)
T ss_dssp EEEE--ETTEEEEGGG
T ss_pred eeEE--EcCeEEEccc
Confidence 5677 8999998665
No 15
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=31.66 E-value=36 Score=26.77 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=27.7
Q ss_pred eEEEEEEecCCceEEEEEeccCceEEEEeCCe--eeEcC
Q psy13476 128 QLVGVVTYYGKHYSTFFFHTKLKVWIYFDDAT--VREVG 164 (177)
Q Consensus 128 ~L~smVcyyG~HY~af~~~~~~~~W~~fDDs~--V~~vg 164 (177)
...|.||-+.+|.+|.=+ -.+.|+.+|... =+.|+
T Consensus 109 ~~~~FI~N~~~HWfaiRk--igg~WyNLdS~l~~P~~i~ 145 (191)
T 3o65_A 109 NERSFICNYKQHWFTIRK--FGKHWFNLNSLLAGPELIS 145 (191)
T ss_dssp GCCEEEEEESSCEEEEEE--ETTEEEECCTTSSSCEEEC
T ss_pred hhhhhhhccccceeeEEe--cCCEEEEccCCCCCCCCcC
Confidence 466889999999999877 678999999644 44466
No 16
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=26.61 E-value=15 Score=22.20 Aligned_cols=16 Identities=25% Similarity=0.602 Sum_probs=11.9
Q ss_pred CCCCCcCccccCcccee
Q psy13476 54 MGDIRDCPSACGAKIQI 70 (177)
Q Consensus 54 ~~~~~~C~~~CG~~~~i 70 (177)
.-+.|.| .+||++...
T Consensus 14 ~~~YRvC-~~CgkPi~l 29 (44)
T 2lo3_A 14 PIQYRVC-EKCGKPLAL 29 (44)
T ss_dssp CCCEEEC-TTTCCEEET
T ss_pred cccchhh-cccCCcchH
Confidence 3468899 599998753
No 17
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=24.93 E-value=1.6e+02 Score=20.62 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=28.9
Q ss_pred CceeEEEEEEecC--------CceEEEEEeccCceEEEEeCCeeeEcC
Q psy13476 125 PLHQLVGVVTYYG--------KHYSTFFFHTKLKVWIYFDDATVREVG 164 (177)
Q Consensus 125 ~~Y~L~smVcyyG--------~HY~af~~~~~~~~W~~fDDs~V~~vg 164 (177)
..+.|+|+-.+-. ++++..+..+++|+|++-|+...-..|
T Consensus 24 pgi~lf~fh~~iN~~~~~~~~g~~~~dit~~~~GrW~~~d~~~~lk~G 71 (107)
T 3ie4_A 24 EGITLFAFHGKLNEEMEGLEAGTWARDIVKAKNGRWTFRDRITALKPG 71 (107)
T ss_dssp TTEEEEEEEEEESSCCCSSCCCSEEEEECCCBTTEEEEEESSCCCCTT
T ss_pred CCCEEEEEEEEeCCCCcCccccEeEEeEeEecCCEEEEECCCceeCCC
Confidence 3477888776633 368888888899999999875544444
No 18
>2jq5_A SEC-C motif; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; NMR {Rhodopseudomonas palustris}
Probab=24.35 E-value=45 Score=24.33 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=11.8
Q ss_pred EEEEEeccCceEEEEeC
Q psy13476 141 STFFFHTKLKVWIYFDD 157 (177)
Q Consensus 141 ~af~~~~~~~~W~~fDD 157 (177)
.-|.| .+|+|+|.|-
T Consensus 110 SrF~r--~~g~W~YvDG 124 (128)
T 2jq5_A 110 SQFRK--ARGRWYFSEG 124 (128)
T ss_dssp EEEEE--ETTEEEEEEE
T ss_pred eeEEE--ECCEEEEeCC
Confidence 45776 7899999984
No 19
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=20.41 E-value=52 Score=18.35 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=12.9
Q ss_pred CcCc-cccCcc------ceeeeeccCCCc
Q psy13476 58 RDCP-SACGAK------IQIRRTLMNRPE 79 (177)
Q Consensus 58 ~~C~-~~CG~~------~~i~~~L~~~P~ 79 (177)
..|| ++|... ...++.|..+|-
T Consensus 2 ~~CPtpGC~g~GH~~g~~~~H~slsgCP~ 30 (31)
T 2jx1_A 2 LKCPTPGCDGSGHITGNYASHRSLSGCPR 30 (31)
T ss_dssp CSCSCTTCCSSCCSSSSCSCCSSSSSCTT
T ss_pred CcCCCCCccccceeccccccccccccCcC
Confidence 4587 588322 233566888884
No 20
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=20.36 E-value=1.9e+02 Score=20.18 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=24.8
Q ss_pred ceeEEEEEEecC--------CceEEEEEeccCceEEEEeCCe
Q psy13476 126 LHQLVGVVTYYG--------KHYSTFFFHTKLKVWIYFDDAT 159 (177)
Q Consensus 126 ~Y~L~smVcyyG--------~HY~af~~~~~~~~W~~fDDs~ 159 (177)
.+.|+|+--+-. ++++.-+...++|+|++-|+..
T Consensus 26 Gi~lfafh~~iN~~~~~~~~g~~~~dit~~~~GrW~~~d~~~ 67 (106)
T 3aqy_A 26 GFSLFAFHGKLNEEMDGLEAGHWARDITKPKEGRWTFRDRNV 67 (106)
T ss_dssp SCSEEEEEEEESSCCCSSCCCSEEEEECCCBTTEEEEEECSC
T ss_pred CcEEEEEEEEecCCCCccccceeeeeeeEecCCEEEEECCce
Confidence 356777655542 4788888888999999999644
Done!