RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13476
(177 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 3e-04
Identities = 23/168 (13%), Positives = 44/168 (26%), Gaps = 66/168 (39%)
Query: 22 YVSASALTAQARQSTTPSHPDLFGQLLKKA-----------GGMGDIRDCPSACGAKIQI 70
Y++A + + + S L + GG G+ D
Sbjct: 126 YITARIMAKRPFDKKSNS------ALFRAVGEGNAQLVAIFGGQGNTDDY---------- 169
Query: 71 RRTLMNRPEIVSVGVVWDSDRPSLEHIM----AVLGTL-RTSLRLSDVF-HGCD------ 118
E+ + + + + ++ L L RT+L VF G +
Sbjct: 170 ---F---EELRDL---YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 119 ------------NAAASTPLHQLVGVVTYY------GKHYSTFFFHTK 148
+ S PL ++ + Y G + K
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Score = 27.7 bits (61), Expect = 2.3
Identities = 41/271 (15%), Positives = 76/271 (28%), Gaps = 123/271 (45%)
Query: 12 GLGLENQMVHY----------------------------VSASALTAQAR---------- 33
+G+ Q+ HY V+A A+ A+
Sbjct: 240 LIGV-IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI-AETDSWESFFVSVR 297
Query: 34 -------------QSTTPSHPDLFGQLLKKA--GGMGD------IRDCPSACGAKIQ--I 70
P + L +L+ + G I + ++Q +
Sbjct: 298 KAITVLFFIGVRCYEAYP-NTSLPPSILEDSLENNEGVPSPMLSISNLTQ---EQVQDYV 353
Query: 71 RRTLMNRPE--IVSVGVVWDSDR-------P-SLEHIMAVLGTLRTSLRLSDVFHGCDNA 120
+T + P V + +V + + P SL L +LR + G D +
Sbjct: 354 NKTNSHLPAGKQVEISLV-NGAKNLVVSGPPQSLYG-------LNLTLRKAKAPSGLDQS 405
Query: 121 AA----------------STPLHQ--LVGVVTYYGKHY--STFFFHTK-LKVWIY--FDD 157
++P H LV K + F+ K +++ +Y FD
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 158 ATVREVGP---------------RWEQTIFF 173
+ +R + +WE T F
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes,
DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo
sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Length = 404
Score = 36.2 bits (83), Expect = 0.004
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 118 DNAAASTPLHQLVGVVTYYGK-----HYSTFFFHTKLKVWIYFDDATVREVGPR 166
D + + + L V+T+ G+ HY ++ + + WI FDD V V P
Sbjct: 319 DIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDE-WIKFDDDKVSIVTPE 371
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease,
UBL conjugation pathway deubiquitinating enzyme, DUB,
zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB:
3n3k_A
Length = 396
Score = 35.6 bits (82), Expect = 0.006
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 106 TSLRLSDVFHGCDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVR 161
+L LS + + L V +YG HY+ + + + W FDD V
Sbjct: 319 ENLDLSQY---VIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVS 375
Query: 162 EVGP 165
++
Sbjct: 376 DISV 379
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease,
substrate ENZY complex, hydrolase-protein binding
complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A
2ibi_A
Length = 348
Score = 35.1 bits (81), Expect = 0.006
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 117 CDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPR 166
+ + ++ L V + G HY+ + W F+D++V +
Sbjct: 274 FASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSS 327
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.021
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 9/33 (27%)
Query: 3 ELQTLDVLEG-LGLENQMVHYV--SASALTAQA 32
E Q L L+ L L Y SA AL +A
Sbjct: 18 EKQALKKLQASLKL------YADDSAPALAIKA 44
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo
sapiens}
Length = 367
Score = 33.8 bits (77), Expect = 0.024
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 108 LRLSDVFHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREV 163
+R ++ N +A ++ L+ V +YG HY+ + + W YFDD+ V
Sbjct: 281 IRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLA 340
Query: 164 GP 165
Sbjct: 341 SE 342
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 31.4 bits (71), Expect = 0.15
Identities = 10/54 (18%), Positives = 14/54 (25%), Gaps = 4/54 (7%)
Query: 117 CDNAAASTPLHQLVGVV----TYYGKHYSTFFFHTKLKVWIYFDDATVREVGPR 166
+ L V+ +G HY + W FDD V
Sbjct: 231 QKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKE 284
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 31.1 bits (70), Expect = 0.18
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 128 QLVGVV----TYYGKHYSTFFFHTKLKVWIYFDDATVREVGPR 166
L V+ +G HY + W FDD V
Sbjct: 411 ILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKE 453
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural
genomics consortium, SGC, activator, alternative
splicing, chromatin regulator, nucleus, polymorphism,
protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A
Length = 355
Score = 30.8 bits (69), Expect = 0.18
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 128 QLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPR 166
QL + + G HY+ W ++D+ V V
Sbjct: 295 QLYALCNHSGSVHYGHYTALCRCQTG--WHVYNDSRVSPVSEN 335
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 28.8 bits (64), Expect = 1.1
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 115 HGCDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREV 163
+N +++L+G+V++ G HY F W F+D+ V +
Sbjct: 404 KHSENGKVPDIIYELIGIVSHKGTVNEGHY-IAFCKISGGQWFKFNDSMVSSI 455
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.3
Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 39/159 (24%)
Query: 5 QTLDVL----EGLGLENQMVHYVSASALTAQARQSTTPSHPDLFGQLLKKAGGMGDIRDC 60
L ++ + + S + Q ++ST S P ++ +L K
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVK---------- 438
Query: 61 PSACGAKIQIRRTLMNRPEIVSVGVVWDSDRPSLE---------HIMAVLGTLRTSLRLS 111
+ + R++++ I D P L+ H+ + R +L
Sbjct: 439 ---LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-FR 494
Query: 112 DVF-----------HGCDNAAASTPLHQLVGVVTYYGKH 139
VF H AS + + + +Y +
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.420
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,724,023
Number of extensions: 153001
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 13
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.7 bits)