RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13476
         (177 letters)



>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
           8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 348

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 4/169 (2%)

Query: 1   MTELQTLDVLEGLGLENQMVHYVSASALTAQARQSTTPSHPDLFGQLLKKAGGMGDIRDC 60
           + + Q    ++ L    +   + +   L+     ++  +  D      K+     + R  
Sbjct: 164 LFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFY 223

Query: 61  PSACGAKIQIRRTLMNRPEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGCDNA 120
            S C A+    + +        + V              +  ++   L   D+       
Sbjct: 224 CSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGP 283

Query: 121 AASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGP 165
             +   + L  V  +YG     HY+ +  +   + W  FDD  V ++  
Sbjct: 284 KNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISV 332


>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
           2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 336

 Score = 42.8 bits (99), Expect = 6e-06
 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 123 STPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGP 165
           +  ++ L  V  + G     HY+ +        W  F+D++V  +  
Sbjct: 274 NHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSS 320


>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
           HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 347

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 19/154 (12%), Positives = 38/154 (24%), Gaps = 5/154 (3%)

Query: 15  LENQMVHYVSASALTAQARQSTTPSHPDLFGQLLKKAGGMGDIRDCPSACGAKIQIRRTL 74
            E              Q       +  + F   +      GD +      G +   +   
Sbjct: 128 KEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVK 187

Query: 75  MNR-PEIVSVGVVWDSDRPSLEHIMAVLGTLRTSLRLSDVFHGCDNAAASTPLHQLVGVV 133
               P ++ + ++     P  +  + +        +L                + L  V+
Sbjct: 188 FLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVL 247

Query: 134 TYYGK----HYSTFFFHTKLKVWIYFDDATVREV 163
            + G     HY  +        W  FDD  V   
Sbjct: 248 VHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRC 281


>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
           14 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 40.9 bits (94), Expect = 3e-05
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 118 DNAAASTPLHQLVGVVTYYGK-----HYSTFFFHTKLKVWIYFDDATVREVGP 165
           D  + +   + L  V+T+ G+     HY   +   K   WI FDD  V  V P
Sbjct: 309 DIGSNNCGYYDLQAVLTHQGRSSSSGHY-VSWVKRKQDEWIKFDDDKVSIVTP 360


>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 397

 Score = 39.8 bits (91), Expect = 8e-05
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 118 DNAAASTPLHQLVGVVTYYGK-----HYSTF-FFHTKLKVWIYFDDATVREV 163
           +     + ++ L+GV+T+ G      HY  F         W  F+D  V  V
Sbjct: 319 EKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVV 370


>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha
           chain {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 597

 Score = 26.2 bits (56), Expect = 3.1
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 13  LGLENQMVHYVSASALTAQARQSTTPSHPDLFG---QLLKKAGGM 54
            G++ Q+V++ +A  +  + R  +  +  D +G   + L+K  G+
Sbjct: 502 AGVDPQLVNFRNAEDVWNEWRMVSKGTTYDFWGMTRERLRKESGL 546


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0408    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 657,753
Number of extensions: 28080
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 6
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)