BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13477
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q6K|A Chain A, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6K|B Chain B, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6T|A Chain A, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
pdb|3Q6T|B Chain B, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
Length = 381
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 75/199 (37%), Gaps = 47/199 (23%)
Query: 96 KLFVTVPRWEDGVPSTLNYI----PLDAATSSSPNLIPYPSWEANQVPPQPQDQCDTLTT 151
KLF+ VPR VP TL + L SP L + + + LT+
Sbjct: 39 KLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGK----------ELTS 88
Query: 152 TYRIKADSCDRLWVLDSGTVGIGNTTKQICPYAIHVFDLKTDRRIRKYQFRPEDILPGTF 211
Y+ D C RLWV+D G+V +Y+ R P
Sbjct: 89 IYQPVIDDCRRLWVVDIGSV--------------------------EYRSRGAKDYPSHR 122
Query: 212 IANIAVDTDR----RIRKYQFRPEDILPGTFIANIAVDVGK---NCEDTFLYASDELAYG 264
A +A D + + +Y F + T+ AVDV +C +TF+Y ++ L
Sbjct: 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGA 182
Query: 265 LLSYSWEENTSWRASHGFF 283
L Y ++ SW +H F
Sbjct: 183 LFIYDHKKQDSWNVTHPTF 201
>pdb|3Q6P|A Chain A, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
pdb|3Q6P|B Chain B, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
Length = 381
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 75/199 (37%), Gaps = 47/199 (23%)
Query: 96 KLFVTVPRWEDGVPSTLNYI----PLDAATSSSPNLIPYPSWEANQVPPQPQDQCDTLTT 151
KLF+ VPR VP TL + L SP L + + + LT+
Sbjct: 39 KLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGK----------ELTS 88
Query: 152 TYRIKADSCDRLWVLDSGTVGIGNTTKQICPYAIHVFDLKTDRRIRKYQFRPEDILPGTF 211
Y+ D C RLWV+D G+V +Y+ R P
Sbjct: 89 IYQPVIDDCRRLWVVDIGSV--------------------------EYRSRGAKDYPSHR 122
Query: 212 IANIAVDTDR----RIRKYQFRPEDILPGTFIANIAVDVGK---NCEDTFLYASDELAYG 264
A +A D + + +Y F + T+ AVDV +C +TF+Y ++ L
Sbjct: 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGA 182
Query: 265 LLSYSWEENTSWRASHGFF 283
L Y ++ SW +H F
Sbjct: 183 LFIYDHKKQDSWNVTHPTF 201
>pdb|4F36|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F4A|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
Length = 157
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 214 NIAVDTDRRIRKYQFRPEDILPGTFIANIAVDVGKNC---EDTFLYASDELAYGLLSYSW 270
+ V R+ P D LPGT + AVDVG+N D+ A E+A+ +
Sbjct: 83 GLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVESAKREIAF---WFKA 139
Query: 271 EENTSW 276
EE SW
Sbjct: 140 EELVSW 145
>pdb|4FKX|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKY|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
Length = 161
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 214 NIAVDTDRRIRKYQFRPEDILPGTFIANIAVDVGKNC---EDTFLYASDELAYGLLSYSW 270
+ V R+ P D LPGT + AVDVG+N D+ A E+A+ +
Sbjct: 87 GLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVESAKREIAF---WFKA 143
Query: 271 EENTSW 276
EE SW
Sbjct: 144 EELVSW 149
>pdb|3PRV|A Chain A, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|B Chain B, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|C Chain C, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|D Chain D, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|E Chain E, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|F Chain F, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
Length = 157
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 230 PEDILPGTFIANIAVDVGKNC---EDTFLYASDELAY 263
P D LPGT + AVDVG+N D+ A E+A+
Sbjct: 101 PADSLPGTIRGDFAVDVGRNVCHGSDSVDSAKREIAF 137
>pdb|2QE8|A Chain A, Crystal Structure Of A Putative Hydrolase (Ava_4197) From
Anabaena Variabilis Atcc 29413 At 1.35 A Resolution
pdb|2QE8|B Chain B, Crystal Structure Of A Putative Hydrolase (Ava_4197) From
Anabaena Variabilis Atcc 29413 At 1.35 A Resolution
Length = 343
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 139 PPQPQDQCDTLTTTYRIKADSCDRLWVLDSGTVGIGNTTKQICPYAIHVFDLKTDRRIRK 198
PPQ + T T IK+D +W LD+ GN +K + + +D ++ R
Sbjct: 56 PPQSGNAIITFDTVLGIKSDGNGIVWXLDN-----GNQSKSVP--KLVAWDTLNNQLSRV 108
Query: 199 YQFRPEDILPGTFIANIAVD 218
P L +F+ ++AVD
Sbjct: 109 IYLPPPITLSNSFVNDLAVD 128
>pdb|1PKU|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|G Chain G, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|H Chain H, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|I Chain I, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|J Chain J, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|K Chain K, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|L Chain L, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
Length = 150
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 204 EDILPGTFIANI-----AVDTDRRIRKYQFRPEDILPGTFIANIAVDVGKNCEDTFLYAS 258
E I+ G +A + V T RRI RP + PGT A+ AV+VG+N ++ S
Sbjct: 64 EYIISGPVVAMVWEGKDVVATGRRIIGAT-RPWEAAPGTIRADYAVEVGRNV----IHGS 118
Query: 259 DELAYG 264
D + G
Sbjct: 119 DSVDNG 124
>pdb|3CWV|A Chain A, Crystal Structure Of B-Subunit Of The Dna Gyrase From
Myxococcus Xanthus
pdb|3CWV|B Chain B, Crystal Structure Of B-Subunit Of The Dna Gyrase From
Myxococcus Xanthus
Length = 369
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 234 LPGTFIANIAVDVGKNCEDTFLYASDELAYGLLSYSWEE 272
LPG + N+ G C D Y L Y LL ++EE
Sbjct: 7 LPGGIVENVRKRPGMYCGDVGEYGLHHLVYFLLDVAYEE 45
>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate
Kinase B With Unordered Nucleotide-Binding Loop.
pdb|3NGS|A Chain A, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|B Chain B, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|C Chain C, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGT|A Chain A, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|B Chain B, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|C Chain C, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|D Chain D, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|E Chain E, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|F Chain F, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|G Chain G, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|H Chain H, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|I Chain I, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|J Chain J, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|K Chain K, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|L Chain L, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|M Chain M, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|N Chain N, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGU|A Chain A, Structure Of Leishmania Ndkb Complexed With Adp.
pdb|3NGU|B Chain B, Structure Of Leishmania Ndkb Complexed With Adp
Length = 151
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 230 PEDILPGTFIANIAVDVGKN-CE--DTFLYASDELAY 263
P D PGT + AVDVG+N C D+ A E+A+
Sbjct: 95 PADSQPGTIRGDFAVDVGRNVCHGSDSVESAEREIAF 131
>pdb|3H2B|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
pdb|3H2B|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
Cg3271 From Corynebacterium Glutamicum In Complex With
S- Adenosyl-L-Homocysteine And Pyrophosphate. Northeast
Structural Genomics Consortium Target Cgr113a
Length = 203
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 21 TNLSGVVVDFGSG-GWWFESKSTVSLGHSLEKLQ 53
T + GV++D GSG G W + SLGH +E L+
Sbjct: 39 TGVDGVILDVGSGTGRW--TGHLASLGHQIEGLE 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,382,479
Number of Sequences: 62578
Number of extensions: 414551
Number of successful extensions: 911
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 897
Number of HSP's gapped (non-prelim): 19
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)